-
1
-
-
0022591495
-
The classification of amino acid conservation
-
Taylor,W.R. (1986) The classification of amino acid conservation. J. Theor. Biol., 119, 205-218.
-
(1986)
J. Theor. Biol.
, vol.119
, pp. 205-218
-
-
Taylor, W.R.1
-
2
-
-
0031583033
-
Information content of individual genetic sequences
-
Schneider,T.D. (1997) Information content of individual genetic sequences. J. Theor. Biol., 189, 427-441.
-
(1997)
J. Theor. Biol.
, vol.189
, pp. 427-441
-
-
Schneider, T.D.1
-
3
-
-
0029913807
-
An evolutionary trace method defines binding surfaces common to protein families
-
Lichtarge,O., Bourne,H.R. and Cohen,F.E. (1996) An evolutionary trace method defines binding surfaces common to protein families. J. Mol. Biol., 257, 342-358.
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 342-358
-
-
Lichtarge, O.1
Bourne, H.R.2
Cohen, F.E.3
-
4
-
-
0036681416
-
Scoring residue conservation
-
Valdar,W.S. (2002) Scoring residue conservation. Proteins, 48, 227-241.
-
(2002)
Proteins
, vol.48
, pp. 227-241
-
-
Valdar, W.S.1
-
5
-
-
0035940421
-
THEMATICS: A simple computational predictor of enzyme function from structure
-
Ondrechen,M.J., Clifton,J.G. and Ringe,D. (2001) THEMATICS: A simple computational predictor of enzyme function from structure. Proc. Natl Acad. Sci. USA, 98, 12473-12478.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 12473-12478
-
-
Ondrechen, M.J.1
Clifton, J.G.2
Ringe, D.3
-
6
-
-
0036300444
-
Structural clusters of evolutionary trace residues are statistically significant and common in proteins
-
Madabushi,S., Yao,H., Marsh,M., Kristensen,D.M., Philippi,A., Sowa,M.E. and Lichtarge,O. (2002) Structural clusters of evolutionary trace residues are statistically significant and common in proteins. J. Mol. Biol., 316, 139-154.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 139-154
-
-
Madabushi, S.1
Yao, H.2
Marsh, M.3
Kristensen, D.M.4
Philippi, A.5
Sowa, M.E.6
Lichtarge, O.7
-
7
-
-
0030447531
-
Protein clefts in molecular recognition and function
-
Laskowski,R.A., Luscombe,N.M., Swindells,M.B. and Thornton,J.M. (1996) Protein clefts in molecular recognition and function. Protein Sci., 5, 2438-2452.
-
(1996)
Protein Sci.
, vol.5
, pp. 2438-2452
-
-
Laskowski, R.A.1
Luscombe, N.M.2
Swindells, M.B.3
Thornton, J.M.4
-
8
-
-
1042264059
-
Searching for functional sites in protein structures
-
Jones,S. and Thornton,J.M. (2004) Searching for functional sites in protein structures. Curr. Opin. Chem. Biol., 8, 3-7.
-
(2004)
Curr. Opin. Chem. Biol.
, vol.8
, pp. 3-7
-
-
Jones, S.1
Thornton, J.M.2
-
9
-
-
0035896024
-
ConSurf: An algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information
-
Armon,A., Graur,D. and Ben-Tal,N. (2001) ConSurf: An algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information. J. Mol. Biol., 307, 447-463.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 447-463
-
-
Armon, A.1
Graur, D.2
Ben-Tal, N.3
-
10
-
-
21444449871
-
FSSA: A novel method for identifying functional signatures from structural alignments
-
Wang,K. and Samudrala,R. (2005) FSSA: A novel method for identifying functional signatures from structural alignments. Bioinformatics, 21, 2969-2977.
-
(2005)
Bioinformatics
, vol.21
, pp. 2969-2977
-
-
Wang, K.1
Samudrala, R.2
-
11
-
-
0036291145
-
Predicting changes in the stability of proteins and protein complexes: A study of more than 1000 mutations
-
Guerois,R., Nielsen,J.E. and Serrano,L. (2002) Predicting changes in the stability of proteins and protein complexes: A study of more than 1000 mutations. J. Mol. Biol., 320, 369-387.
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 369-387
-
-
Guerois, R.1
Nielsen, J.E.2
Serrano, L.3
-
12
-
-
0037195144
-
A simple physical model for binding energy hot spots in protein-protein complexes
-
Kortemme,T. and Baker,D. (2002) A simple physical model for binding energy hot spots in protein-protein complexes. Proc. Natl Acad. Sci. USA, 99, 14116-14121.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 14116-14121
-
-
Kortemme, T.1
Baker, D.2
-
13
-
-
0034641749
-
Native protein sequences are close to optimal for their structures
-
Kuhlman,B. and Baker,D. (2000) Native protein sequences are close to optimal for their structures. Proc. Natl Acad. Sci. USA, 97, 10383-10388.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 10383-10388
-
-
Kuhlman, B.1
Baker, D.2
-
14
-
-
0030793767
-
De novo protein design: Fully automated sequence selection
-
Dahiyat,B.I. and Mayo,S.L. (1997) De novo protein design: Fully automated sequence selection. Science, 278, 82-87.
-
(1997)
Science
, vol.278
, pp. 82-87
-
-
Dahiyat, B.I.1
Mayo, S.L.2
-
15
-
-
0345306764
-
Design of a novel globular protein fold with atomic-level accuracy
-
Kuhlman,B., Dantas,G., Ireton,G.C., Varani,G., Stoddard,B.L. and Baker,D. (2003) Design of a novel globular protein fold with atomic-level accuracy. Science, 302, 1364-1368.
-
(2003)
Science
, vol.302
, pp. 1364-1368
-
-
Kuhlman, B.1
Dantas, G.2
Ireton, G.C.3
Varani, G.4
Stoddard, B.L.5
Baker, D.6
-
16
-
-
0038752617
-
Computational design of receptor and sensor proteins with novel functions
-
Looger,L.L., Dwyer,M.A., Smith,J.J. and Hellinga,H.W. (2003) Computational design of receptor and sensor proteins with novel functions. Nature, 423, 185-190.
-
(2003)
Nature
, vol.423
, pp. 185-190
-
-
Looger, L.L.1
Dwyer, M.A.2
Smith, J.J.3
Hellinga, H.W.4
-
17
-
-
0141705410
-
Using protein design for homology detection and active site searches
-
Pei,J., Dokholyan,N.V., Shakhnovich,E.I. and Grishin,N.V. (2003) Using protein design for homology detection and active site searches. Proc. Natl Acad. Sci. USA, 100, 11361-11366.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 11361-11366
-
-
Pei, J.1
Dokholyan, N.V.2
Shakhnovich, E.I.3
Grishin, N.V.4
-
18
-
-
0035965145
-
Prediction of functionally important residues based solely on the computed energetics of protein structure
-
Elcock,A.H. (2001) Prediction of functionally important residues based solely on the computed energetics of protein structure. J. Mol. Biol., 312, 885-896.
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 885-896
-
-
Elcock, A.H.1
-
19
-
-
4544230537
-
Distinguishing structural and functional restraints in evolution in order to identify interaction sites
-
Chelliah,V., Chen,L., Blundell,T.L. and Lovell,S.C. (2004) Distinguishing structural and functional restraints in evolution in order to identify interaction sites. J. Mol. Biol., 342, 1487-1504.
-
(2004)
J. Mol. Biol.
, vol.342
, pp. 1487-1504
-
-
Chelliah, V.1
Chen, L.2
Blundell, T.L.3
Lovell, S.C.4
-
20
-
-
0028896311
-
A relationship between protein stability and protein function
-
Shoichet,B.K., Baase,W.A., Kuroki,R. and Matthews,B.W. (1995) A relationship between protein stability and protein function. Proc. Natl Acad. Sci. USA, 92, 452-456.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 452-456
-
-
Shoichet, B.K.1
Baase, W.A.2
Kuroki, R.3
Matthews, B.W.4
-
21
-
-
0036384211
-
Structural bases of stability-function tradeoffs in enzymes
-
Beadle,B.M. and Shoichet,B.K. (2002) Structural bases of stability-function tradeoffs in enzymes. J. Mol. Biol., 321, 285-296.
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 285-296
-
-
Beadle, B.M.1
Shoichet, B.K.2
-
22
-
-
0345864027
-
The catalytic site atlas: A resource of catalytic sites and residues identified in enzymes using structural data
-
Porter,C.T., Bartlett G.J. and Thornton,J.M. (2004) The catalytic site atlas: A resource of catalytic sites and residues identified in enzymes using structural data. Nucleic Acids Res., 32, D129-133.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Porter, C.T.1
Bartlett, G.J.2
Thornton, J.M.3
-
23
-
-
13444304389
-
GenBank
-
Benson,D.A., Karsch-Mizrachi,I., Lipman,D.J., Ostell,J. and Wheeler,D.L. (2005) GenBank. Nucleic Acids Res., 33, D34-38.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
24
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar,R.C. (2004) MUSCLE: A multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics, 5, 113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
26
-
-
0035178383
-
Protein-protein interfaces: Analysis of amino acid conservation in homodimers
-
Valdar,W.S. and Thornton,J.M. (2001) Protein-protein interfaces: analysis of amino acid conservation in homodimers. Proteins, 42, 108-124.
-
(2001)
Proteins
, vol.42
, pp. 108-124
-
-
Valdar, W.S.1
Thornton, J.M.2
-
27
-
-
0042674397
-
Using a neural network and spatial clustering to predict the location of active sites in enzymes
-
Gutteridge,A., Bartlett,G.J. and Thornton,J.M. (2003) Using a neural network and spatial clustering to predict the location of active sites in enzymes. J. Mol. Biol., 330, 719-734.
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 719-734
-
-
Gutteridge, A.1
Bartlett, G.J.2
Thornton, J.M.3
-
28
-
-
0035853280
-
Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins
-
Landgraf,R., Xenarios,I. and Eisenberg,D. (2001) Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins. J. Mol. Biol., 307, 1487-1502.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1487-1502
-
-
Landgraf, R.1
Xenarios, I.2
Eisenberg, D.3
|