메뉴 건너뛰기




Volumn 17, Issue 10, 1998, Pages 2947-2960

The crystal structure of asparaginyl-tRNA synthetase from Thermus thermophilus and its complexes with ATP and asparaginyl-adenylate: The mechanism of discrimination between asparagine and aspartic acid

Author keywords

Aminoacyl tRNA synthetase; Asparagine; ATP; Enzyme specificity; X ray crystallography

Indexed keywords

ADENOSINE PHOSPHATE; ADENOSINE TRIPHOSPHATE; AMINO ACID TRANSFER RNA LIGASE; ASPARAGINE; ASPARAGINE TRANSFER RNA; ASPARTATE TRANSFER RNA LIGASE; ASPARTIC ACID; BACTERIAL ENZYME;

EID: 0032525301     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/17.10.2947     Document Type: Article
Times cited : (89)

References (37)
  • 1
    • 0030934790 scopus 로고    scopus 로고
    • Crystal structure analysis of activation of histidine by T.thermophilus histidyl-tRNA synthetase
    • Åberg, A., Yaremchuk, A., Tukalo, M., Rasmussen, B. and Cusack, S. (1997) Crystal structure analysis of activation of histidine by T.thermophilus histidyl-tRNA synthetase. Biochemistry, 36, 30843094.
    • (1997) Biochemistry , vol.36 , pp. 30843094
    • Åberg, A.1    Yaremchuk, A.2    Tukalo, M.3    Rasmussen, B.4    Cusack, S.5
  • 2
    • 0029682671 scopus 로고    scopus 로고
    • Differences in the magnesium dependences of the class I and class II aminoacyl-tRNA synthetases from E.coli, Eur
    • Airas, K.R. (1996) Differences in the magnesium dependences of the class I and class II aminoacyl-tRNA synthetases from E.coli, Eur. J. Biochem., 240, 223-231.
    • (1996) J. Biochem. , vol.240 , pp. 223-231
    • Airas, K.R.1
  • 3
    • 0030788568 scopus 로고    scopus 로고
    • The first step in aminoacylation at the atomic level in histidyl-tRNA synthetase
    • Arnez, J.G., Augustine, J.G., Moras, D. and Francklyn, C.S. (1997) The first step in aminoacylation at the atomic level in histidyl-tRNA synthetase. Proc. Natl Acad. Sci. USA, 94. 7144-7149.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 7144-7149
    • Arnez, J.G.1    Augustine, J.G.2    Moras, D.3    Francklyn, C.S.4
  • 4
    • 0032518176 scopus 로고    scopus 로고
    • Human cytosolic asparaginyl-tRNA synthetase: CDNA sequence, functional expression in E.coli and characterisation as human auto-antigen
    • Beaulande, M., Tarbouriech, N. and Hartlein, M. (1998) Human cytosolic asparaginyl-tRNA synthetase: cDNA sequence, functional expression in E.coli and characterisation as human auto-antigen. Nucleic Acids Res., 15, 521-524.
    • (1998) Nucleic Acids Res. , vol.15 , pp. 521-524
    • Beaulande, M.1    Tarbouriech, N.2    Hartlein, M.3
  • 5
    • 0028351539 scopus 로고
    • Crystal structure at 2.5 Å resolution of seryl- TRNA synthetase complexed with two analogs of seryl-adenylate
    • Belrhali, H. et al. (1994) Crystal structure at 2.5 Å resolution of seryl- tRNA synthetase complexed with two analogs of seryl-adenylate. Science. 263, 1432-1436.
    • (1994) Science , vol.263 , pp. 1432-1436
    • Belrhali, H.1
  • 7
    • 0030888776 scopus 로고    scopus 로고
    • Preliminary X-ray diffraction studies on asparaginyl-tRNA synthetase from Thermits thermophilus
    • Berthet-Colominas, C., Seignovert, L., Cusack, S. and Leberman, R. (1997) Preliminary X-ray diffraction studies on asparaginyl-tRNA synthetase from Thermits thermophilus. Ada Crystallogr., D53, 195-196.
    • (1997) Ada Crystallogr. , vol.D53 , pp. 195-196
    • Berthet-Colominas, C.1    Seignovert, L.2    Cusack, S.3    Leberman, R.4
  • 8
    • 0003769049 scopus 로고
    • Yale University Press, New Haven, CT
    • Brünger, T.A. (1992) X-PLOR Version 3.1. Yale University Press, New Haven, CT.
    • (1992) X-PLOR Version 3.1
    • Brünger, T.A.1
  • 9
    • 16044367245 scopus 로고    scopus 로고
    • Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschn
    • Bult, CJ. et al. (1996) Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschn. Science, 273, 1058-1073.
    • (1996) Science , vol.273 , pp. 1058-1073
    • Bult, C.J.1
  • 10
    • 0027411514 scopus 로고
    • Yeast tRNA(Asp) recognition by its cognate dass fi aminoacyl-tRNA synthetase
    • Cavarelli, J., Rees, B., Ruff, M., Thierry, J.C. and Moras, D, (1993) Yeast tRNA(Asp) recognition by its cognate dass fi aminoacyl-tRNA synthetase. Nature, 362, 181-184.
    • (1993) Nature , vol.362 , pp. 181-184
    • Cavarelli, J.1    Rees, B.2    Ruff, M.3    Thierry, J.C.4    Moras, D.5
  • 11
    • 0028084909 scopus 로고
    • The active site of yeast aspartyl-tRNA synthetase: Structura/ and functional aspects of the ammoacylation reaction
    • Cavarelli, J. et al. (1994) The active site of yeast aspartyl-tRNA synthetase: structura/ and functional aspects of the ammoacylation reaction. EMBO J., 13, 327-337.
    • (1994) EMBO J. , vol.13 , pp. 327-337
    • Cavarelli, J.1
  • 12
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • Collaborative Computational Project Number 4 (1994) The CCP4 suite: programs for protein crystallography. Ada Crystalogr., 050, 760-763,
    • (1994) Ada Crystalogr. , vol.50 , pp. 760-763
  • 14
    • 0029099218 scopus 로고
    • Eleven down and nine 10 go
    • Cusack.S. (1995) Eleven down and nine 10 go. Nature Struct. Biol., 2, 824-831.
    • (1995) Nature Struct. Biol. , vol.2 , pp. 824-831
    • CusackS1
  • 15
    • 0031456444 scopus 로고    scopus 로고
    • Aminoacyl-tRNA synthetases
    • Cusack, S. (1997) Aminoacyl-tRNA synthetases. Curr. Opin. Struct. Biol., 7, 881-889.
    • (1997) Curr. Opin. Struct. Biol. , vol.7 , pp. 881-889
    • Cusack, S.1
  • 16
    • 0025043116 scopus 로고
    • A second class of synthetase structure revealed C by X-ray analysis of E.coli seryl-tRNA synthetase at 2.5 Å resolution
    • Cusack, S., Berthet-Colominas, C., Hartlein, M., Nassar, N. and Leberman, R. (1990) A second class of synthetase structure revealed C by X-ray analysis of E.coli seryl-tRNA synthetase at 2.5 Å resolution. Nature, 347, 249-255.
    • (1990) Nature , vol.347 , pp. 249-255
    • Cusack, S.1    Berthet-Colominas, C.2    Hartlein, M.3    Nassar, N.4    Leberman, R.5
  • 17
    • 0029907152 scopus 로고    scopus 로고
    • The crystal structures of T.thermophilus lysyl-tRNA synthetase complexed with E.coli tRNA(Lys) and a T.thermophilus tRNA(Lys) transcript: Anticodon recognition and conformational changes upon binding of a lysyladenylate analogue
    • Cusack, S., Yaremchuk, A. and Tukalo, M. (1996) The crystal structures of T.thermophilus lysyl-tRNA synthetase complexed with E.coli tRNA(Lys) and a T.thermophilus tRNA(Lys) transcript: anticodon recognition and conformational changes upon binding of a lysyladenylate analogue. EMBO J., 15, 6321-6334.
    • (1996) EMBO J. , vol.15 , pp. 6321-6334
    • Cusack, S.1    Yaremchuk, A.2    Tukalo, M.3
  • 18
    • 0029781454 scopus 로고    scopus 로고
    • TRNA-depencient asparagine formation
    • Cumow, A.W., Ibba, M. and SöII, D. (1996) tRNA-depencient asparagine formation. Nature, 382, 589-590.
    • (1996) Nature , vol.382 , pp. 589-590
    • Cumow, A.W.1    Ibba, M.2    Söii, D.3
  • 20
    • 0030729838 scopus 로고    scopus 로고
    • An extensively modified version of MolScript that includes greatly enhanced coloring capabilities
    • Esnouf, R.M. (1997) An extensively modified version of MolScript that includes greatly enhanced coloring capabilities. J. Mol. Graphics, 15, 133-138.
    • (1997) J. Mol. Graphics , vol.15 , pp. 133-138
    • Esnouf, R.M.1
  • 21
    • 0025158208 scopus 로고
    • Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs
    • Eriani, G., Delarue, M., Poch, O., Gangloff, J. and Moras, D. (1990) Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs. Nature. 347, 203-206.
    • (1990) Nature , vol.347 , pp. 203-206
    • Eriani, G.1    Delarue, M.2    Poch, O.3    Gangloff, J.4    Moras, D.5
  • 22
    • 0027482856 scopus 로고
    • Role of dimerization in yeast aspartyl-tRNA synthetase and importance of the class II invariant proline
    • Eriani, G., Cavarelli, J., Martin, F., Dirheimer, G., Moras, D. and Gangloff, J. (1993) Role of dimerization in yeast aspartyl-tRNA synthetase and importance of the class II invariant proline. Proc. Natl Acad. Sci. USA. 90, 10816-10820
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 10816-10820
    • Eriani, G.1    Cavarelli, J.2    Martin, F.3    Dirheimer, G.4    Moras, D.5    Gangloff, J.6
  • 23
    • 0025764226 scopus 로고
    • Structure and evolution of a group of related aminoacyl-tRNA synthetases
    • Gatti, D.L. and Tzagoloff, A. (1991) Structure and evolution of a group of related aminoacyl-tRNA synthetases. J. Mol. Biol., 218, 557-568.
    • (1991) J. Mol. Biol. , vol.218 , pp. 557-568
    • Gatti, D.L.1    Tzagoloff, A.2
  • 25
    • 0031081750 scopus 로고    scopus 로고
    • Aminoacyl-tRNA synthesis: Divergent routes to a common goal
    • Ibba, M., Curnow, A.W. and Soll, D. (1997) Aminoacyl-tRNA synthesis: divergent routes to a common goal. Trends Biochem. Sci., 22, 39-42.
    • (1997) Trends Biochem. Sci. , vol.22 , pp. 39-42
    • Ibba, M.1    Curnow, A.W.2    Soll, D.3
  • 26
    • 0028793421 scopus 로고
    • An immunodominant antigen of Bntgia malayi is an asparaginyltRNA synthetase
    • Kron, M. Marquand, K., Hartlein, M., Price, S. and Lebermaru, R. (1995) An immunodominant antigen of Bntgia malayi is an asparaginyltRNA synthetase. FEBS Lett., 374, 122-124.
    • (1995) FEBS Lett. , vol.374 , pp. 122-124
    • Kron, M.1    Marquand, K.2    Hartlein, M.3    Price, S.4    Lebermaru, R.5
  • 27
    • 0000243829 scopus 로고
    • Procheck: A program to check the stereochemical quality of protein structures
    • Laskowski, R.A., MacArthur, M.W., Moss, D.S. and Thornton, J.M. (1993) Procheck: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr., 26. 283-291.
    • (1993) J. Appl. Crystallogr. , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 29
    • 0031984643 scopus 로고    scopus 로고
    • Crystal structure of asparagine synthetase reveals a close evolutionary relationship to class II aminoacyl-tRNA synthetase
    • Nakatsu, T., Kato, H. and Oda, J. (1998) Crystal structure of asparagine synthetase reveals a close evolutionary relationship to class II aminoacyl-tRNA synthetase. Nature Struct. Biol., 5, 15-19.
    • (1998) Nature Struct. Biol. , vol.5 , pp. 15-19
    • Nakatsu, T.1    Kato, H.2    Oda, J.3
  • 31
    • 0029643954 scopus 로고
    • The crystal structure of the lysyl-tRNA synthetase (LysU) from Escherichia coii
    • Onesti, S., Miller, A.D. and Brick, P. (1995) The crystal structure of the lysyl-tRNA synthetase (LysU) from Escherichia coii. Structure, 3, 163-176.
    • (1995) Structure , vol.3 , pp. 163-176
    • Onesti, S.1    Miller, A.D.2    Brick, P.3
  • 32
    • 0028104763 scopus 로고
    • Synthesis and recognition of aspartyl-adenylate by T.thermophilus aspartyltRNA synthetase
    • Poterszman, A., Delarue, M., Thierry, J.-C. and Moras, D. (1994) Synthesis and recognition of aspartyl-adenylate by T.thermophilus aspartyltRNA synthetase. J. Mol. Biol., 244. 158-167.
    • (1994) J. Mol. Biol. , vol.244 , pp. 158-167
    • Poterszman, A.1    Delarue, M.2    Thierry, J.-C.3    Moras, D.4
  • 33
    • 0026429275 scopus 로고
    • Class II aminoacyl transfer RNA synthetases: Crystal structure of yeast aspartyltRNA synthetase complexed with tRNA(Asp)
    • Ruff, M., Krishnaswamy, S., Boeglin, M., Poterszman, A., Mitschler, A., Podjarny.A., Rees.B., Thierry, J.-C. and Moras, D. (1991) Class II aminoacyl transfer RNA synthetases: crystal structure of yeast aspartyltRNA synthetase complexed with tRNA(Asp). Science, 252, 1682- 1689.
    • (1991) Science , vol.252 , pp. 1682-1689
    • Ruff, M.1    Krishnaswamy, S.2    Boeglin, M.3    Poterszman, A.4    Mitschler, A.5    Podjarny, A.6    Rees, B.7    Thierry, J.-C.8    Moras, D.9
  • 34
    • 0030038728 scopus 로고    scopus 로고
    • Asparaginyl-tRNA synthetase from Thermus thermophilus HB8: Sequence of the gene and crystallization of the enzyme expressed in Escherichia coli
    • Seignovert, L., Härtlein, M. and Leberman, R. (1996) Asparaginyl-tRNA synthetase from Thermus thermophilus HB8: sequence of the gene and crystallization of the enzyme expressed in Escherichia coli. Eur. J. Biochem., 239, 501-508.
    • (1996) Eur. J. Biochem. , vol.239 , pp. 501-508
    • Seignovert, L.1    Härtlein, M.2    Leberman, R.3
  • 35
    • 0030835739 scopus 로고    scopus 로고
    • The complete genome sequence of the gastric pathogen Helicobacter pylori
    • Tomb, J.-F. et al. (1997) The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature, 388, 539-547.
    • (1997) Nature , vol.388 , pp. 539-547
    • Tomb, J.-F.1
  • 36
    • 0025998477 scopus 로고
    • X-ray crystallographic conformational study of 5'-0-I7V-(L-alanyl)-sulfamoyladenosine, a substrate analogue for alanyl-tRNA synthetase
    • Ueda, H., Shoku, Y., Hayashi, N., Mitsunaga.J., In, Y., Doi, M., Inoue, M. and lshida, T. (1991) X-ray crystallographic conformational study of 5'-0-I7V-(L-alanyl)-sulfamoyl]adenosine, a substrate analogue for alanyl-tRNA synthetase. Biochim. Biophys. Acta, 1080, 126-134.
    • (1991) Biochim. Biophys. Acta , vol.1080 , pp. 126-134
    • Ueda, H.1    Shoku, Y.2    Hayashi, N.3    MitsunagaJ4    In, Y.5    Doi, M.6    Inoue, M.7    Lshida, T.8
  • 37
    • 13244249836 scopus 로고
    • The structure of Pyrococcus furiosus glutamate dehydrogenase reveals a key role for ion-pair networks in maintaining enzyme stability at extreme temperatures
    • Yip, K.S.P. et al. (1995) The structure of Pyrococcus furiosus glutamate dehydrogenase reveals a key role for ion-pair networks in maintaining enzyme stability at extreme temperatures. Structure, 3, 1147-1158.
    • (1995) Structure , vol.3 , pp. 1147-1158
    • Yip, K.S.P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.