-
1
-
-
33747881750
-
The general transcription machinery and general cofactors
-
Thomas, M. C.; Chiang, C. M. The general transcription machinery and general cofactors Crit. Rev. Biochem. Mol. Biol. 2006, 41, 105
-
(2006)
Crit. Rev. Biochem. Mol. Biol.
, vol.41
, pp. 105
-
-
Thomas, M.C.1
Chiang, C.M.2
-
2
-
-
56049084903
-
Message in a nucleus: Signaling to the transcriptional machinery
-
Carrera, I.; Treisman, J. E. Message in a nucleus: signaling to the transcriptional machinery Curr. Opin. Genet. Dev. 2008, 18, 397
-
(2008)
Curr. Opin. Genet. Dev.
, vol.18
, pp. 397
-
-
Carrera, I.1
Treisman, J.E.2
-
3
-
-
77149174487
-
Regulation of gene expression via the core promoter and the basal transcriptional machinery
-
Juven-Gershon, T.; Kadonaga, J. T. Regulation of gene expression via the core promoter and the basal transcriptional machinery Dev. Biol. 2010, 339, 225
-
(2010)
Dev. Biol.
, vol.339
, pp. 225
-
-
Juven-Gershon, T.1
Kadonaga, J.T.2
-
4
-
-
34548801789
-
The molecular basis of eukaryotic transcription
-
Kornberg, R. D. The molecular basis of eukaryotic transcription Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 12955
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 12955
-
-
Kornberg, R.D.1
-
5
-
-
72149130298
-
Shifting players and paradigms in cell-specific transcription
-
D'Alessio, J. A.; Wright, K. J.; Tjian, R. Shifting players and paradigms in cell-specific transcription Mol. Cell 2009, 36, 924
-
(2009)
Mol. Cell
, vol.36
, pp. 924
-
-
D'Alessio, J.A.1
Wright, K.J.2
Tjian, R.3
-
6
-
-
84872395984
-
Basic mechanisms of RNA polymerase II activity and alteration of gene expression in Saccharomyces cerevisiae
-
Kaplan, C. D. Basic mechanisms of RNA polymerase II activity and alteration of gene expression in Saccharomyces cerevisiae Biochim. Biophys. Acta 2013, 1829, 39-54
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 39-54
-
-
Kaplan, C.D.1
-
7
-
-
0036753399
-
A recombinant RNA polymerase II-like enzyme capable of promoter-specific transcription
-
Werner, F.; Weinzierl, R. O. A recombinant RNA polymerase II-like enzyme capable of promoter-specific transcription Mol. Cell 2002, 10, 635
-
(2002)
Mol. Cell
, vol.10
, pp. 635
-
-
Werner, F.1
Weinzierl, R.O.2
-
8
-
-
10644284660
-
A fully recombinant system for activator-dependent archaeal transcription
-
Ouhammouch, M.; Werner, F.; Weinzierl, R. O.; Geiduschek, E. P. A fully recombinant system for activator-dependent archaeal transcription J. Biol. Chem. 2004, 279, 51719
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 51719
-
-
Ouhammouch, M.1
Werner, F.2
Weinzierl, R.O.3
Geiduschek, E.P.4
-
9
-
-
34249652975
-
The RPB7 orthologue E' is required for transcriptional activity of a reconstituted archaeal core enzyme at low temperatures and stimulates open complex formation
-
Naji, S.; Grunberg, S.; Thomm, M. The RPB7 orthologue E' is required for transcriptional activity of a reconstituted archaeal core enzyme at low temperatures and stimulates open complex formation J. Biol. Chem. 2007, 282, 11047
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 11047
-
-
Naji, S.1
Grunberg, S.2
Thomm, M.3
-
10
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
-
Woese, C. R.; Kandler, O.; Wheelis, M. L. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya Proc. Natl. Acad. Sci. U.S.A. 1990, 87, 4576
-
(1990)
Proc. Natl. Acad. Sci. U.S.A.
, vol.87
, pp. 4576
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
11
-
-
79959298162
-
Recent advances in the understanding of archaeal transcription
-
Grohmann, D.; Werner, F. Recent advances in the understanding of archaeal transcription Curr. Opin. Microbiol. 2011, 14, 328
-
(2011)
Curr. Opin. Microbiol.
, vol.14
, pp. 328
-
-
Grohmann, D.1
Werner, F.2
-
12
-
-
78651504121
-
Evolution of multisubunit RNA polymerases in the three domains of life
-
Werner, F.; Grohmann, D. Evolution of multisubunit RNA polymerases in the three domains of life Nat. Rev. Microbiol. 2011, 9, 85
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 85
-
-
Werner, F.1
Grohmann, D.2
-
13
-
-
38349104234
-
The RNA polymerase factory: A robotic in vitro assembly platform for high-throughput production of recombinant protein complexes
-
Nottebaum, S.; Tan, L.; Trzaska, D.; Carney, H. C.; Weinzierl, R. O. The RNA polymerase factory: a robotic in vitro assembly platform for high-throughput production of recombinant protein complexes Nucleic Acids Res. 2008, 36, 245
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 245
-
-
Nottebaum, S.1
Tan, L.2
Trzaska, D.3
Carney, H.C.4
Weinzierl, R.O.5
-
14
-
-
57249108333
-
Bridge helix and trigger loop perturbations generate superactive RNA polymerases
-
Tan, L.; Wiesler, S.; Trzaska, D.; Carney, H. C.; Weinzierl, R. O. Bridge helix and trigger loop perturbations generate superactive RNA polymerases J. Biol. 2008, 7, 40
-
(2008)
J. Biol.
, vol.7
, pp. 40
-
-
Tan, L.1
Wiesler, S.2
Trzaska, D.3
Carney, H.C.4
Weinzierl, R.O.5
-
15
-
-
84881517901
-
The RNA polymerase trigger loop functions in all three phases of the transcription cycle
-
Fouqueau, T.; Zeller, M. E.; Cheung, A. C.; Cramer, P.; Thomm, M. The RNA polymerase trigger loop functions in all three phases of the transcription cycle Nucleic Acids Res. 2013, 41, 7048
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 7048
-
-
Fouqueau, T.1
Zeller, M.E.2
Cheung, A.C.3
Cramer, P.4
Thomm, M.5
-
16
-
-
0014683539
-
Multiple forms of DNA-dependent RNA polymerase in eukaryotic organisms
-
Roeder, R. G.; Rutter, W. J. Multiple forms of DNA-dependent RNA polymerase in eukaryotic organisms Nature 1969, 224, 234
-
(1969)
Nature
, vol.224
, pp. 234
-
-
Roeder, R.G.1
Rutter, W.J.2
-
17
-
-
0020395999
-
Multiple factors involved in the transcription of class III genes in Xenopus laevis
-
Shastry, B. S.; Ng, S. Y.; Roeder, R. G. Multiple factors involved in the transcription of class III genes in Xenopus laevis J. Biol. Chem. 1982, 257, 12979
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 12979
-
-
Shastry, B.S.1
Ng, S.Y.2
Roeder, R.G.3
-
18
-
-
0023260308
-
Factors involved in specific transcription in mammalian RNA polymerase II. Functional analysis of initiation factors IIA and IID and identification of a new factor operating at sequences downstream of the initiation site
-
Reinberg, D.; Horikoshi, M.; Roeder, R. G. Factors involved in specific transcription in mammalian RNA polymerase II. Functional analysis of initiation factors IIA and IID and identification of a new factor operating at sequences downstream of the initiation site J. Biol. Chem. 1987, 262, 3322
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 3322
-
-
Reinberg, D.1
Horikoshi, M.2
Roeder, R.G.3
-
19
-
-
0023234351
-
Factors involved in specific transcription by mammalian RNA polymerase II. Purification and functional analysis of initiation factors IIB and IIE
-
Reinberg, D.; Roeder, R. G. Factors involved in specific transcription by mammalian RNA polymerase II. Purification and functional analysis of initiation factors IIB and IIE J. Biol. Chem. 1987, 262, 3310
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 3310
-
-
Reinberg, D.1
Roeder, R.G.2
-
20
-
-
0024977414
-
5 intermediate complexes in transcription initiation by RNA polymerase-II
-
Buratowski, S.; Hahn, S.; Guarente, L.; Sharp, P. A. 5 intermediate complexes in transcription initiation by RNA polymerase-II Cell 1989, 56, 549
-
(1989)
Cell
, vol.56
, pp. 549
-
-
Buratowski, S.1
Hahn, S.2
Guarente, L.3
Sharp, P.A.4
-
21
-
-
84555178838
-
Probing endogenous RNA polymerase II pre-initiation complexes by electrophoretic mobility shift assay
-
Wilhelm, E.; Takacs, C.; Bell, B. Probing endogenous RNA polymerase II pre-initiation complexes by electrophoretic mobility shift assay Methods Mol. Biol. 2012, 809, 63
-
(2012)
Methods Mol. Biol.
, vol.809
, pp. 63
-
-
Wilhelm, E.1
Takacs, C.2
Bell, B.3
-
22
-
-
0028126647
-
Reconstitution of human TFIIA activity from recombinant polypeptides: A role in TFIID-mediated transcription
-
Sun, X.; Ma, D.; Sheldon, M.; Yeung, K.; Reinberg, D. Reconstitution of human TFIIA activity from recombinant polypeptides: a role in TFIID-mediated transcription Genes Dev. 1994, 8, 2336
-
(1994)
Genes Dev.
, vol.8
, pp. 2336
-
-
Sun, X.1
Ma, D.2
Sheldon, M.3
Yeung, K.4
Reinberg, D.5
-
23
-
-
0028938737
-
Human general transcription factor TFIIA: Characterization of a cDNA encoding the small subunit and requirement for basal and activated transcription
-
DeJong, J.; Bernstein, R.; Roeder, R. G. Human general transcription factor TFIIA: characterization of a cDNA encoding the small subunit and requirement for basal and activated transcription Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 3313
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 3313
-
-
Dejong, J.1
Bernstein, R.2
Roeder, R.G.3
-
24
-
-
0025820544
-
Cloning of a human gene encoding the general transcription Initiation factor IIB
-
Ha, I.; Lane, W. S.; Reinberg, D. Cloning of a human gene encoding the general transcription Initiation factor IIB Nature 1991, 352, 689
-
(1991)
Nature
, vol.352
, pp. 689
-
-
Ha, I.1
Lane, W.S.2
Reinberg, D.3
-
25
-
-
0025375345
-
Functional domains and upstream activation properties of cloned human TATA binding protein
-
Peterson, M. G.; Tanese, N.; Pugh, B. F.; Tjian, R. Functional domains and upstream activation properties of cloned human TATA binding protein Science 1990, 248, 1625
-
(1990)
Science
, vol.248
, pp. 1625
-
-
Peterson, M.G.1
Tanese, N.2
Pugh, B.F.3
Tjian, R.4
-
26
-
-
0026038323
-
Structure and functional properties of human general transcription factor IIE
-
Peterson, M. G.; Inostroza, J.; Maxon, M. E.; Flores, O.; Admon, A.; Reinberg, D.; Tjian, R. Structure and functional properties of human general transcription factor IIE Nature 1991, 354, 369
-
(1991)
Nature
, vol.354
, pp. 369
-
-
Peterson, M.G.1
Inostroza, J.2
Maxon, M.E.3
Flores, O.4
Admon, A.5
Reinberg, D.6
Tjian, R.7
-
27
-
-
0026598874
-
Encoding Rap74, a general initiation-factor for transcription by RNA polymerase II
-
Finkelstein, A.; Kostrub, C. F.; Li, J.; Chavez, D. P.; Wang, B. Q.; Fang, S. M.; Greenblatt, J.; Burton, Z. F. encoding Rap74, a general initiation-factor for transcription by RNA polymerase II Nature 1992, 355, 464
-
(1992)
Nature
, vol.355
, pp. 464
-
-
Finkelstein, A.1
Kostrub, C.F.2
Li, J.3
Chavez, D.P.4
Wang, B.Q.5
Fang, S.M.6
Greenblatt, J.7
Burton, Z.F.8
-
28
-
-
0029806764
-
Purification of human RNA polymerase II and general transcription factors
-
Maldonado, E.; Drapkin, R.; Reinberg, D. Purification of human RNA polymerase II and general transcription factors RNA Polymerase Assoc. Factors, Part B 1996, 274, 72
-
(1996)
RNA Polymerase Assoc. Factors, Part B
, vol.274
, pp. 72
-
-
Maldonado, E.1
Drapkin, R.2
Reinberg, D.3
-
29
-
-
0027402317
-
Largest subunit of Drosophila transcription factor IID directs assembly of a complex containing TBP and a coactivator
-
Weinzierl, R. O.; Dynlacht, B. D.; Tjian, R. Largest subunit of Drosophila transcription factor IID directs assembly of a complex containing TBP and a coactivator Nature 1993, 362, 511
-
(1993)
Nature
, vol.362
, pp. 511
-
-
Weinzierl, R.O.1
Dynlacht, B.D.2
Tjian, R.3
-
30
-
-
0028108925
-
Assembly of recombinant TfFIID reveals differential coactivator requirements for distinct transcriptional activators
-
Chen, J. L.; Attardi, L. D.; Verrijzer, C. P.; Yokomori, K.; Tjian, R. Assembly of recombinant TfFIID reveals differential coactivator requirements for distinct transcriptional activators Cell 1994, 79, 93
-
(1994)
Cell
, vol.79
, pp. 93
-
-
Chen, J.L.1
Attardi, L.D.2
Verrijzer, C.P.3
Yokomori, K.4
Tjian, R.5
-
31
-
-
84873093285
-
The architecture of human general transcription factor TFIID core complex
-
Bieniossek, C.; Papai, G.; Schaffitzel, C.; Garzoni, F.; Chaillet, M.; Scheer, E.; Papadopoulos, P.; Tora, L.; Schultz, P.; Berger, I. The architecture of human general transcription factor TFIID core complex Nature 2013, 493, 699
-
(2013)
Nature
, vol.493
, pp. 699
-
-
Bieniossek, C.1
Papai, G.2
Schaffitzel, C.3
Garzoni, F.4
Chaillet, M.5
Scheer, E.6
Papadopoulos, P.7
Tora, L.8
Schultz, P.9
Berger, I.10
-
32
-
-
0034865980
-
Reconstitution of recombinant TFIIH that can mediate activator-dependent transcription
-
Fukuda, A.; Yamauchi, J.; Wu, S. Y.; Chiang, C. M.; Muramatsu, M.; Hisatake, K. Reconstitution of recombinant TFIIH that can mediate activator-dependent transcription Genes Cells 2001, 6, 707
-
(2001)
Genes Cells
, vol.6
, pp. 707
-
-
Fukuda, A.1
Yamauchi, J.2
Wu, S.Y.3
Chiang, C.M.4
Muramatsu, M.5
Hisatake, K.6
-
33
-
-
0027168221
-
DNA topology and a minimal set of basal factors for transcription by RNA polymerase II
-
Parvin, J. D.; Sharp, P. A. DNA topology and a minimal set of basal factors for transcription by RNA polymerase II Cell 1993, 73, 533
-
(1993)
Cell
, vol.73
, pp. 533
-
-
Parvin, J.D.1
Sharp, P.A.2
-
34
-
-
0030845031
-
Interactions between the human RNA polymerase II subunits
-
Acker, J.; de Graaff, M.; Cheynel, I.; Khazak, V.; Kedinger, C.; Vigneron, M. Interactions between the human RNA polymerase II subunits J. Biol. Chem. 1997, 272, 16815
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 16815
-
-
Acker, J.1
De Graaff, M.2
Cheynel, I.3
Khazak, V.4
Kedinger, C.5
Vigneron, M.6
-
35
-
-
0034651534
-
Involvement of multiple subunit-subunit contacts in the assembly of RNA polymerase II
-
Kimura, M.; Ishihama, A. Involvement of multiple subunit-subunit contacts in the assembly of RNA polymerase II Nucleic Acids Res. 2000, 28, 952
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 952
-
-
Kimura, M.1
Ishihama, A.2
-
36
-
-
33747783953
-
The origin and evolution of Archaea: A state of the art
-
Gribaldo, S.; Brochier-Armanet, C. The origin and evolution of Archaea: a state of the art Philos. Trans. R. Soc., B 2006, 361, 1007
-
(2006)
Philos. Trans. R. Soc., B
, vol.361
, pp. 1007
-
-
Gribaldo, S.1
Brochier-Armanet, C.2
-
37
-
-
0026343173
-
Control regions of an archaeal Gene - A TATA box and an initiator element promote cell-free transcription of the transfer RNAval gene of Methanococcus vannielii
-
Hausner, W.; Frey, G.; Thomm, M. Control regions of an archaeal Gene-a TATA box and an initiator element promote cell-free transcription of the transfer RNAval gene of Methanococcus vannielii J. Mol. Biol. 1991, 222, 495
-
(1991)
J. Mol. Biol.
, vol.222
, pp. 495
-
-
Hausner, W.1
Frey, G.2
Thomm, M.3
-
38
-
-
0033598826
-
The structural basis for the oriented assembly of a TBP/TFB/promoter complex
-
Littlefield, O.; Korkhin, Y.; Sigler, P. B. The structural basis for the oriented assembly of a TBP/TFB/promoter complex Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 13668
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 13668
-
-
Littlefield, O.1
Korkhin, Y.2
Sigler, P.B.3
-
39
-
-
1642453651
-
Transcription factor B contacts promoter DNA near the transcription start site of the archaeal transcription initiation complex
-
Renfrow, M. B.; Naryshkin, N.; Lewis, L. M.; Chen, H. T.; Ebright, R. H.; Scott, R. A. Transcription factor B contacts promoter DNA near the transcription start site of the archaeal transcription initiation complex J. Biol. Chem. 2004, 279, 2825
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 2825
-
-
Renfrow, M.B.1
Naryshkin, N.2
Lewis, L.M.3
Chen, H.T.4
Ebright, R.H.5
Scott, R.A.6
-
40
-
-
0028361219
-
The TATA-binding protein: A general transcription factor in eukaryotes and archaebacteria
-
Rowlands, T.; Baumann, P.; Jackson, S. P. The TATA-binding protein: a general transcription factor in eukaryotes and archaebacteria Science 1994, 264, 1326
-
(1994)
Science
, vol.264
, pp. 1326
-
-
Rowlands, T.1
Baumann, P.2
Jackson, S.P.3
-
41
-
-
0029043298
-
Transcription - New Insights from studies on Archaea
-
Baumann, P.; Qureshi, S. A.; Jackson, S. P. Transcription-new Insights from studies on Archaea Trends Genet. 1995, 11, 279
-
(1995)
Trends Genet.
, vol.11
, pp. 279
-
-
Baumann, P.1
Qureshi, S.A.2
Jackson, S.P.3
-
42
-
-
0030974754
-
Factor requirements for transcription in the Archaeon Sulfolobus shibatae
-
Qureshi, S. A.; Bell, S. D.; Jackson, S. P. Factor requirements for transcription in the Archaeon Sulfolobus shibatae EMBO J. 1997, 16, 2927
-
(1997)
EMBO J.
, vol.16
, pp. 2927
-
-
Qureshi, S.A.1
Bell, S.D.2
Jackson, S.P.3
-
43
-
-
0024283951
-
An archaebacterial promoter element for stable RNA genes with homology to the TATA box of higher eukaryotes
-
Thomm, M.; Wich, G. An archaebacterial promoter element for stable RNA genes with homology to the TATA box of higher eukaryotes Nucleic Acids Res. 1988, 16, 151
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 151
-
-
Thomm, M.1
Wich, G.2
-
44
-
-
0029887361
-
Archaeal transcription factors and their role in transcription initiation
-
Thomm, M. Archaeal transcription factors and their role in transcription initiation FEMS Microbiol. Rev. 1996, 18, 159
-
(1996)
FEMS Microbiol. Rev.
, vol.18
, pp. 159
-
-
Thomm, M.1
-
45
-
-
79953162966
-
New insights into the function of transcription factor TFIID from recent structural studies
-
Papai, G.; Weil, P. A.; Schultz, P. New insights into the function of transcription factor TFIID from recent structural studies Curr. Opin. Genet. Dev. 2011, 21, 219
-
(2011)
Curr. Opin. Genet. Dev.
, vol.21
, pp. 219
-
-
Papai, G.1
Weil, P.A.2
Schultz, P.3
-
46
-
-
84872412814
-
RNA polymerase II transcription: Structure and mechanism
-
Liu, X.; Bushnell, D. A.; Kornberg, R. D. RNA polymerase II transcription: structure and mechanism Biochim. Biophys. Acta 2013, 1829, 2
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 2
-
-
Liu, X.1
Bushnell, D.A.2
Kornberg, R.D.3
-
47
-
-
84862830777
-
The evolutionary history of protein fold families and proteomes confirms that the archaeal ancestor is more ancient than the ancestors of other superkingdoms
-
Kim, K. M.; Caetano-Anolles, G. The evolutionary history of protein fold families and proteomes confirms that the archaeal ancestor is more ancient than the ancestors of other superkingdoms BMC Evol. Biol. 2012, 12
-
(2012)
BMC Evol. Biol.
, pp. 12
-
-
Kim, K.M.1
Caetano-Anolles, G.2
-
48
-
-
0034859223
-
Basal and regulated transcription in Archaea
-
Bell, S. D.; Magill, C. P.; Jackson, S. P. Basal and regulated transcription in Archaea Biochem. Soc. Trans. 2001, 29, 392
-
(2001)
Biochem. Soc. Trans.
, vol.29
, pp. 392
-
-
Bell, S.D.1
Magill, C.P.2
Jackson, S.P.3
-
49
-
-
49749153798
-
The role of TrmB and TrmB-like transcriptional regulators for sugar transport and metabolism in the hyperthermophilic archaeon Pyrococcus furiosus
-
Lee, S. J.; Surma, M.; Hausner, W.; Thomm, M.; Boos, W. The role of TrmB and TrmB-like transcriptional regulators for sugar transport and metabolism in the hyperthermophilic archaeon Pyrococcus furiosus Arch. Microbiol. 2008, 190, 247
-
(2008)
Arch. Microbiol.
, vol.190
, pp. 247
-
-
Lee, S.J.1
Surma, M.2
Hausner, W.3
Thomm, M.4
Boos, W.5
-
50
-
-
84861550648
-
Activation of archaeal transcription mediated by recruitment of transcription factor B
-
Ochs, S. M.; Thumann, S.; Richau, R.; Weirauch, M. T.; Lowe, T. M.; Thomm, M.; Hausner, W. Activation of archaeal transcription mediated by recruitment of transcription factor B J. Biol. Chem. 2012, 287, 18863
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 18863
-
-
Ochs, S.M.1
Thumann, S.2
Richau, R.3
Weirauch, M.T.4
Lowe, T.M.5
Thomm, M.6
Hausner, W.7
-
51
-
-
84866558862
-
The repertoire of DNA-binding transcription factors in prokaryotes: Functional and evolutionary lessons
-
Perez-Rueda, E.; Martinez-Nunez, M. A. The repertoire of DNA-binding transcription factors in prokaryotes: functional and evolutionary lessons Science Progress 2012, 95, 315
-
(2012)
Science Progress
, vol.95
, pp. 315
-
-
Perez-Rueda, E.1
Martinez-Nunez, M.A.2
-
52
-
-
84873119395
-
Cis-regulatory logic in archaeal transcription
-
Peeters, E.; Peixeiro, N.; Sezonov, G. Cis-regulatory logic in archaeal transcription Biochem. Soc. Trans. 2013, 41, 326
-
(2013)
Biochem. Soc. Trans.
, vol.41
, pp. 326
-
-
Peeters, E.1
Peixeiro, N.2
Sezonov, G.3
-
53
-
-
84861790622
-
Transcriptional regulation by coactivators in embryonic stem cells
-
Fong, Y. W.; Cattoglio, C.; Yamaguchi, T.; Tjian, R. Transcriptional regulation by coactivators in embryonic stem cells Trends Cell Biol. 2012, 22, 292
-
(2012)
Trends Cell Biol.
, vol.22
, pp. 292
-
-
Fong, Y.W.1
Cattoglio, C.2
Yamaguchi, T.3
Tjian, R.4
-
54
-
-
0018255559
-
DNA-dependent RNA polymerase from the archaebacterium Sulfolobus acidocaldarius
-
Zillig, W.; Stetter, K. O.; Janekovic, D. DNA-dependent RNA polymerase from the archaebacterium Sulfolobus acidocaldarius Eur. J. Biochem./FEBS 1979, 96, 597
-
(1979)
Eur. J. Biochem./FEBS
, vol.96
, pp. 597
-
-
Zillig, W.1
Stetter, K.O.2
Janekovic, D.3
-
55
-
-
0020046077
-
DNA-dependent RNA polymerases of thermoacidophilic Archaebacteria
-
Prangishvilli, D.; Zillig, W.; Gierl, A.; Biesert, L.; Holz, I. DNA-dependent RNA polymerases of thermoacidophilic Archaebacteria Eur. J. Biochem. 1982, 122, 471
-
(1982)
Eur. J. Biochem.
, vol.122
, pp. 471
-
-
Prangishvilli, D.1
Zillig, W.2
Gierl, A.3
Biesert, L.4
Holz, I.5
-
56
-
-
0039985557
-
Archaebacterial DNA-dependent RNA polymerases testify to the evolution of the eukaryotic nuclear genome
-
Puhler, G.; Leffers, H.; Gropp, F.; Palm, P.; Klenk, H. P.; Lottspeich, F.; Garrett, R. A.; Zillig, W. Archaebacterial DNA-dependent RNA polymerases testify to the evolution of the eukaryotic nuclear genome Proc. Natl. Acad. Sci. U.S.A. 1989, 86, 4569
-
(1989)
Proc. Natl. Acad. Sci. U.S.A.
, vol.86
, pp. 4569
-
-
Puhler, G.1
Leffers, H.2
Gropp, F.3
Palm, P.4
Klenk, H.P.5
Lottspeich, F.6
Garrett, R.A.7
Zillig, W.8
-
57
-
-
0028983409
-
Transcription in archaea: Similarity to that in eucarya
-
Langer, D.; Hain, J.; Thuriaux, P.; Zillig, W. Transcription in archaea: similarity to that in eucarya Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 5768
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 5768
-
-
Langer, D.1
Hain, J.2
Thuriaux, P.3
Zillig, W.4
-
58
-
-
0032779428
-
Methanobacterium thermoautotrophicum RNA polymerase and transcription in vitro
-
Darcy, T. J.; Hausner, W.; Awery, D. E.; Edwards, A. M.; Thomm, M.; Reeve, J. N. Methanobacterium thermoautotrophicum RNA polymerase and transcription in vitro J. Bacteriol. 1999, 181, 4424
-
(1999)
J. Bacteriol.
, vol.181
, pp. 4424
-
-
Darcy, T.J.1
Hausner, W.2
Awery, D.E.3
Edwards, A.M.4
Thomm, M.5
Reeve, J.N.6
-
59
-
-
0035930324
-
Structure of an archaeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex
-
Todone, F.; Brick, P.; Werner, F.; Weinzierl, R. O.; Onesti, S. Structure of an archaeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex Mol. Cell 2001, 8, 1137
-
(2001)
Mol. Cell
, vol.8
, pp. 1137
-
-
Todone, F.1
Brick, P.2
Werner, F.3
Weinzierl, R.O.4
Onesti, S.5
-
60
-
-
0034612217
-
Crystal structure of RPB5, a universal eukaryotic RNA polymerase subunit and transcription factor interaction target
-
Todone, F.; Weinzierl, R. O.; Brick, P.; Onesti, S. Crystal structure of RPB5, a universal eukaryotic RNA polymerase subunit and transcription factor interaction target Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 6306
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 6306
-
-
Todone, F.1
Weinzierl, R.O.2
Brick, P.3
Onesti, S.4
-
61
-
-
1242339612
-
Topography of the euryarchaeal transcription initiation complex
-
Bartlett, M. S.; Thomm, M.; Geiduschek, E. P. Topography of the euryarchaeal transcription initiation complex J. Biol. Chem. 2004, 279, 5894
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 5894
-
-
Bartlett, M.S.1
Thomm, M.2
Geiduschek, E.P.3
-
62
-
-
60349087567
-
The archaeal RNA polymerase subunit P and the eukaryotic polymerase subunit Rpb12 are interchangeable in vivo and in vitro
-
Reich, C.; Zeller, M.; Milkereit, P.; Hausner, W.; Cramer, P.; Tschochner, H.; Thomm, M. The archaeal RNA polymerase subunit P and the eukaryotic polymerase subunit Rpb12 are interchangeable in vivo and in vitro Mol. Microbiol. 2009, 71, 989
-
(2009)
Mol. Microbiol.
, vol.71
, pp. 989
-
-
Reich, C.1
Zeller, M.2
Milkereit, P.3
Hausner, W.4
Cramer, P.5
Tschochner, H.6
Thomm, M.7
-
63
-
-
39149142997
-
The X-ray crystal structure of RNA polymerase from Archaea
-
Hirata, A.; Klein, B. J.; Murakami, K. S. The X-ray crystal structure of RNA polymerase from Archaea Nature 2008, 451, 851
-
(2008)
Nature
, vol.451
, pp. 851
-
-
Hirata, A.1
Klein, B.J.2
Murakami, K.S.3
-
64
-
-
66249122044
-
Evolution of complex RNA polymerases: The complete archaeal RNA polymerase structure
-
Korkhin, Y.; Unligil, U. M.; Littlefield, O.; Nelson, P. J.; Stuart, D. I.; Sigler, P. B.; Bell, S. D.; Abrescia, N. G. A. Evolution of complex RNA polymerases: the complete archaeal RNA polymerase structure PLoS Biol. 2009, 7, 5
-
(2009)
PLoS Biol.
, vol.7
, pp. 5
-
-
Korkhin, Y.1
Unligil, U.M.2
Littlefield, O.3
Nelson, P.J.4
Stuart, D.I.5
Sigler, P.B.6
Bell, S.D.7
Abrescia, N.G.A.8
-
65
-
-
33750043192
-
Protein-protein interactions in the archaeal transcriptional machinery - Binding studies of isolated RNA polymerase subunits and transcription factors
-
Goede, B.; Naji, S.; von Kampen, O.; Ilg, K.; Thomm, M. Protein-protein interactions in the archaeal transcriptional machinery-binding studies of isolated RNA polymerase subunits and transcription factors J. Biol. Chem. 2006, 281, 30581
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 30581
-
-
Goede, B.1
Naji, S.2
Von Kampen, O.3
Ilg, K.4
Thomm, M.5
-
66
-
-
0035214616
-
Bivalent cations and amino-acid composition contribute to the thermostability of Bacillus licheniformis xylose isomerase
-
Vieille, C.; Epting, K. L.; Kelly, R. M.; Zeikus, J. G. Bivalent cations and amino-acid composition contribute to the thermostability of Bacillus licheniformis xylose isomerase Eur. J. Biochem./FEBS 2001, 268, 6291
-
(2001)
Eur. J. Biochem./FEBS
, vol.268
, pp. 6291
-
-
Vieille, C.1
Epting, K.L.2
Kelly, R.M.3
Zeikus, J.G.4
-
67
-
-
0035098779
-
Hyperthermophilic enzymes: Sources, uses, and molecular mechanisms for thermostability
-
Vieille, C.; Zeikus, G. J. Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability Microbiol. Mol. Biol. Rev. 2001, 65, 1
-
(2001)
Microbiol. Mol. Biol. Rev.
, vol.65
, pp. 1
-
-
Vieille, C.1
Zeikus, G.J.2
-
68
-
-
0039116206
-
Structural differences between mesophilic, moderately thermophilic and extremely thermophilic protein subunits: Results of a comprehensive survey
-
Szilagyi, A.; Zavodszky, P. Structural differences between mesophilic, moderately thermophilic and extremely thermophilic protein subunits: results of a comprehensive survey Structure 2000, 8, 493
-
(2000)
Structure
, vol.8
, pp. 493
-
-
Szilagyi, A.1
Zavodszky, P.2
-
69
-
-
13244249836
-
The structure of Pyrococcus furiosus glutamate dehydrogenase reveals a key role for ion-pair networks in maintaining enzyme stability at extreme temperatures
-
Yip, K. S.; Stillman, T. J.; Britton, K. L.; Artymiuk, P. J.; Baker, P. J.; Sedelnikova, S. E.; Engel, P. C.; Pasquo, A.; Chiaraluce, R.; Consalvi, V. The structure of Pyrococcus furiosus glutamate dehydrogenase reveals a key role for ion-pair networks in maintaining enzyme stability at extreme temperatures Structure 1995, 3, 1147
-
(1995)
Structure
, vol.3
, pp. 1147
-
-
Yip, K.S.1
Stillman, T.J.2
Britton, K.L.3
Artymiuk, P.J.4
Baker, P.J.5
Sedelnikova, S.E.6
Engel, P.C.7
Pasquo, A.8
Chiaraluce, R.9
Consalvi, V.10
-
70
-
-
16044367245
-
Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
-
Bult, C. J.; White, O.; Olsen, G. J.; Zhou, L. X.; Fleischmann, R. D.; Sutton, G. G.; Blake, J. A.; FitzGerald, L. M.; Clayton, R. A.; Gocayne, J. D.; Kerlavage, A. R.; Dougherty, B. A.; Tomb, J. F.; Adams, M. D.; Reich, C. I.; Overbeek, R.; Kirkness, E. F.; Weinstock, K. G.; Merrick, J. M.; Glodek, A.; Scott, J. L.; Geoghagen, N. S. M.; Weidman, J. F.; Fuhrmann, J. L.; Nguyen, D.; Utterback, T. R.; Kelley, J. M.; Peterson, J. D.; Sadow, P. W.; Hanna, M. C.; Cotton, M. D.; Roberts, K. M.; Hurst, M. A.; Kaine, B. P.; Borodovsky, M.; Klenk, H. P.; Fraser, C. M.; Smith, H. O.; Woese, C. R.; Venter, J. C. Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii Science 1996, 273, 1058
-
(1996)
Science
, vol.273
, pp. 1058
-
-
Bult, C.J.1
White, O.2
Olsen, G.J.3
Zhou, L.X.4
Fleischmann, R.D.5
Sutton, G.G.6
Blake, J.A.7
Fitzgerald, L.M.8
Clayton, R.A.9
Gocayne, J.D.10
Kerlavage, A.R.11
Dougherty, B.A.12
Tomb, J.F.13
Adams, M.D.14
Reich, C.I.15
Overbeek, R.16
Kirkness, E.F.17
Weinstock, K.G.18
Merrick, J.M.19
Glodek, A.20
Scott, J.L.21
Geoghagen, N.S.M.22
Weidman, J.F.23
Fuhrmann, J.L.24
Nguyen, D.25
Utterback, T.R.26
Kelley, J.M.27
Peterson, J.D.28
Sadow, P.W.29
Hanna, M.C.30
Cotton, M.D.31
Roberts, K.M.32
Hurst, M.A.33
Kaine, B.P.34
Borodovsky, M.35
Klenk, H.P.36
Fraser, C.M.37
Smith, H.O.38
Woese, C.R.39
Venter, J.C.40
more..
-
71
-
-
0034326829
-
Archaeal RNA polymerase subunits F and P are bona fide homologs of eukaryotic RPB4 and RPB12
-
Werner, F.; Eloranta, J. J.; Weinzierl, R. O. Archaeal RNA polymerase subunits F and P are bona fide homologs of eukaryotic RPB4 and RPB12 Nucleic Acids Res. 2000, 28, 4299
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 4299
-
-
Werner, F.1
Eloranta, J.J.2
Weinzierl, R.O.3
-
72
-
-
24344504002
-
Direct modulation of RNA polymerase core functions by basal transcription factors
-
Werner, F.; Weinzierl, R. O. Direct modulation of RNA polymerase core functions by basal transcription factors Mol. Cell. Biol. 2005, 25, 8344
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 8344
-
-
Werner, F.1
Weinzierl, R.O.2
-
73
-
-
33646852973
-
Modulation of RNA polymerase core functions by basal transcription factor TFB/TFIIB
-
Werner, F.; Wiesler, S.; Nottebaum, S.; Weinzierl, R. O. Modulation of RNA polymerase core functions by basal transcription factor TFB/TFIIB Biochem. Soc. Symp. 2006, 49
-
(2006)
Biochem. Soc. Symp.
, pp. 49
-
-
Werner, F.1
Wiesler, S.2
Nottebaum, S.3
Weinzierl, R.O.4
-
74
-
-
79551500633
-
The linker domain of basal transcription factor TFIIB controls distinct recruitment and transcription stimulation functions
-
Wiesler, S. C.; Weinzierl, R. O. The linker domain of basal transcription factor TFIIB controls distinct recruitment and transcription stimulation functions Nucleic Acids Res. 2011, 39, 464
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 464
-
-
Wiesler, S.C.1
Weinzierl, R.O.2
-
75
-
-
84880973608
-
Promoter independent abortive transcription assays unravel functional interactions between TFIIB and RNA polymerase
-
Wiesler, S. C.; Werner, F.; Weinzierl, R. O. Promoter independent abortive transcription assays unravel functional interactions between TFIIB and RNA polymerase Methods Mol. Biol. 2013, 977, 217
-
(2013)
Methods Mol. Biol.
, vol.977
, pp. 217
-
-
Wiesler, S.C.1
Werner, F.2
Weinzierl, R.O.3
-
76
-
-
70350784141
-
Site-directed mutagenesis, purification and assay of Saccharomyces cerevisiae RNA polymerase II
-
Domecq, C.; Kireeva, M.; Archambault, J.; Kashlev, M.; Coulombe, B.; Burton, Z. F. Site-directed mutagenesis, purification and assay of Saccharomyces cerevisiae RNA polymerase II Protein Expression Purif. 2010, 69, 83
-
(2010)
Protein Expression Purif.
, vol.69
, pp. 83
-
-
Domecq, C.1
Kireeva, M.2
Archambault, J.3
Kashlev, M.4
Coulombe, B.5
Burton, Z.F.6
-
77
-
-
84860111277
-
Dissection of Pol II trigger loop function and Pol II activity-dependent control of start site selection in vivo
-
Kaplan, C. D.; Jin, H.; Zhang, I. L.; Belyanin, A. Dissection of Pol II trigger loop function and Pol II activity-dependent control of start site selection in vivo PLoS Genet. 2012, 8, e1002627
-
(2012)
PLoS Genet.
, vol.8
, pp. 1002627
-
-
Kaplan, C.D.1
Jin, H.2
Zhang, I.L.3
Belyanin, A.4
-
78
-
-
0032534715
-
In vitro assembly of an archaeal D-L-N RNA polymerase subunit complex reveals a eukaryote-like structural arrangement
-
Eloranta, J. J.; Kato, A.; Teng, M. S.; Weinzierl, R. O. In vitro assembly of an archaeal D-L-N RNA polymerase subunit complex reveals a eukaryote-like structural arrangement Nucleic Acids Res. 1998, 26, 5562
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 5562
-
-
Eloranta, J.J.1
Kato, A.2
Teng, M.S.3
Weinzierl, R.O.4
-
79
-
-
10644255526
-
Advanced genetic strategies for recombinant protein expression in Escherichia coli
-
Sorensen, H. P.; Mortensen, K. K. Advanced genetic strategies for recombinant protein expression in Escherichia coli J. Biotechnol. 2005, 115, 113
-
(2005)
J. Biotechnol.
, vol.115
, pp. 113
-
-
Sorensen, H.P.1
Mortensen, K.K.2
-
80
-
-
84879918001
-
Overview of approaches to preventing and avoiding proteolysis during expression and purification of proteins
-
Coligan, J. E. Wiley: New York, Chapter 5, Unit 5 25.
-
Ryan, B. J.; Henehan, G. T. Overview of approaches to preventing and avoiding proteolysis during expression and purification of proteins. In Current Protocols in Protein Science; Coligan, J. E., Ed.; Wiley: New York, 2013; Chapter 5, Unit 5 25.
-
(2013)
Current Protocols in Protein Science
-
-
Ryan, B.J.1
Henehan, G.T.2
-
81
-
-
0015526753
-
Subunits of ribonucleic-acid polymerase in function and structure. 1. Reversible dissociations of Escherichia coli ribonucleic-acid polymerase
-
Ishihama, A. Subunits of ribonucleic-acid polymerase in function and structure. 1. Reversible dissociations of Escherichia coli ribonucleic-acid polymerase Biochemistry 1972, 11, 1250
-
(1972)
Biochemistry
, vol.11
, pp. 1250
-
-
Ishihama, A.1
-
82
-
-
0015506575
-
Subunits of RNA polymerase in function and structure. 2. Reconstitution of Escherichia coli RNA polymerase from isolated subunits
-
Ishihama, A.; Ito, K. Subunits of RNA polymerase in function and structure. 2. Reconstitution of Escherichia coli RNA polymerase from isolated subunits J. Mol. Biol. 1972, 72, 111
-
(1972)
J. Mol. Biol.
, vol.72
, pp. 111
-
-
Ishihama, A.1
Ito, K.2
-
83
-
-
0016634027
-
Reconstitution of Escherichia coli DNA-dependent RNA polymerase from Its isolated subunits
-
Palm, P.; Heil, A.; Boyd, D.; Grampp, B.; Zillig, W. Reconstitution of Escherichia coli DNA-dependent RNA polymerase from Its isolated subunits Eur. J. Biochem. 1975, 53, 283
-
(1975)
Eur. J. Biochem.
, vol.53
, pp. 283
-
-
Palm, P.1
Heil, A.2
Boyd, D.3
Grampp, B.4
Zillig, W.5
-
84
-
-
0025286302
-
Recombinant RNA polymerase - Inducible overexpression, purification and assembly of Escherichia coli Rpo gene-products
-
Zalenskaya, K.; Lee, J. Y.; Gujuluva, C. N.; Shin, Y. K.; Slutsky, M.; Goldfarb, A. Recombinant RNA polymerase-inducible overexpression, purification and assembly of Escherichia coli Rpo gene-products Gene 1990, 89, 7
-
(1990)
Gene
, vol.89
, pp. 7
-
-
Zalenskaya, K.1
Lee, J.Y.2
Gujuluva, C.N.3
Shin, Y.K.4
Slutsky, M.5
Goldfarb, A.6
-
85
-
-
0345636051
-
Practical considerations in refolding proteins from inclusion bodies
-
Tsumoto, K.; Ejima, D.; Kumagai, I.; Arakawa, T. Practical considerations in refolding proteins from inclusion bodies Protein Expression Purif. 2003, 28, 1
-
(2003)
Protein Expression Purif.
, vol.28
, pp. 1
-
-
Tsumoto, K.1
Ejima, D.2
Kumagai, I.3
Arakawa, T.4
-
86
-
-
13644268136
-
Strategies for the recovery of active proteins through refolding of bacterial inclusion body proteins
-
Vallejo, L. F.; Rinas, U. Strategies for the recovery of active proteins through refolding of bacterial inclusion body proteins Microb. Cell Fact. 2004, 3, 11
-
(2004)
Microb. Cell Fact.
, vol.3
, pp. 11
-
-
Vallejo, L.F.1
Rinas, U.2
-
87
-
-
19644389665
-
Solubilization and refolding of bacterial inclusion body proteins
-
Singh, S. M.; Panda, A. K. Solubilization and refolding of bacterial inclusion body proteins J. Biosci. Bioeng. 2005, 99, 303
-
(2005)
J. Biosci. Bioeng.
, vol.99
, pp. 303
-
-
Singh, S.M.1
Panda, A.K.2
-
88
-
-
33644878610
-
The REFOLD database: A tool for the optimization of protein expression and refolding
-
Chow, M. K. M.; Amin, A. A.; Fulton, K. F.; Fernando, T.; Kamau, L.; Batty, C.; Louca, M.; Ho, S.; Whisstock, J. C.; Bottomley, S. P.; Buckle, A. M. The REFOLD database: a tool for the optimization of protein expression and refolding Nucleic Acids Res. 2006, 34, D207
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 207
-
-
Chow, M.K.M.1
Amin, A.A.2
Fulton, K.F.3
Fernando, T.4
Kamau, L.5
Batty, C.6
Louca, M.7
Ho, S.8
Whisstock, J.C.9
Bottomley, S.P.10
Buckle, A.M.11
-
89
-
-
32644489660
-
REFOLD: An analytical database of protein refolding methods
-
Chow, M. K. M.; Amin, A. A.; Fulton, K. F.; Whisstock, J. C.; Buckle, A. M.; Bottomley, S. P. REFOLD: An analytical database of protein refolding methods Protein Expression Purif. 2006, 46, 166
-
(2006)
Protein Expression Purif.
, vol.46
, pp. 166
-
-
Chow, M.K.M.1
Amin, A.A.2
Fulton, K.F.3
Whisstock, J.C.4
Buckle, A.M.5
Bottomley, S.P.6
-
90
-
-
77958579653
-
The nucleotide addition cycle of RNA polymerase is controlled by two molecular hinges in the Bridge Helix domain
-
Weinzierl, R. O. The nucleotide addition cycle of RNA polymerase is controlled by two molecular hinges in the Bridge Helix domain BMC Biol. 2010, 8, 134
-
(2010)
BMC Biol.
, vol.8
, pp. 134
-
-
Weinzierl, R.O.1
-
91
-
-
79953759344
-
Role of Solvation Effects in protein denaturation: From thermodynamics to single molecules and back
-
England, J. L.; Haran, G. Role of Solvation Effects in protein denaturation: from thermodynamics to single molecules and back Annu. Rev. Phys. Chem. 2011, 62, 257
-
(2011)
Annu. Rev. Phys. Chem.
, vol.62
, pp. 257
-
-
England, J.L.1
Haran, G.2
-
92
-
-
0013784519
-
Reactions of cyanate with functional groups of proteins. 3. Reactions with amino and carboxyl groups
-
Stark, G. R. Reactions of cyanate with functional groups of proteins. 3. Reactions with amino and carboxyl groups Biochemistry 1965, 4, 1030
-
(1965)
Biochemistry
, vol.4
, pp. 1030
-
-
Stark, G.R.1
-
93
-
-
84862881149
-
On the Molecular Mechanism of stabilization of proteins by cosolvents: Role of Lifshitz electrodynamic forces
-
Damodaran, S. On the Molecular Mechanism of stabilization of proteins by cosolvents: role of Lifshitz electrodynamic forces Langmuir 2012, 28, 9475
-
(2012)
Langmuir
, vol.28
, pp. 9475
-
-
Damodaran, S.1
-
94
-
-
0034607658
-
Zinc stoichiometry of yeast RNA polymerase II and characterization of mutations in the zinc-binding domain of the largest subunit
-
Donaldson, I. M.; Friesen, J. D. Zinc stoichiometry of yeast RNA polymerase II and characterization of mutations in the zinc-binding domain of the largest subunit J. Biol. Chem. 2000, 275, 13780
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 13780
-
-
Donaldson, I.M.1
Friesen, J.D.2
-
95
-
-
0033578701
-
Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 Å resolution
-
Zhang, G.; Campbell, E. A.; Minakhin, L.; Richter, C.; Severinov, K.; Darst, S. A. Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 Å resolution Cell 1999, 98, 811
-
(1999)
Cell
, vol.98
, pp. 811
-
-
Zhang, G.1
Campbell, E.A.2
Minakhin, L.3
Richter, C.4
Severinov, K.5
Darst, S.A.6
-
96
-
-
0034724953
-
Architecture of RNA polymerase II and implications for the transcription mechanism
-
Cramer, P.; Bushnell, D. A.; Fu, J.; Gnatt, A. L.; Maier-Davis, B.; Thompson, N. E.; Burgess, R. R.; Edwards, A. M.; David, P. R.; Kornberg, R. D. Architecture of RNA polymerase II and implications for the transcription mechanism Science 2000, 288, 640
-
(2000)
Science
, vol.288
, pp. 640
-
-
Cramer, P.1
Bushnell, D.A.2
Fu, J.3
Gnatt, A.L.4
Maier-Davis, B.5
Thompson, N.E.6
Burgess, R.R.7
Edwards, A.M.8
David, P.R.9
Kornberg, R.D.10
-
97
-
-
0035827346
-
Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution
-
Cramer, P.; Bushnell, D. A.; Kornberg, R. D. Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution Science 2001, 292, 1863
-
(2001)
Science
, vol.292
, pp. 1863
-
-
Cramer, P.1
Bushnell, D.A.2
Kornberg, R.D.3
-
98
-
-
0035827332
-
Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 Å resolution
-
Gnatt, A. L.; Cramer, P.; Fu, J.; Bushnell, D. A.; Kornberg, R. D. Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 Å resolution Science 2001, 292, 1876
-
(2001)
Science
, vol.292
, pp. 1876
-
-
Gnatt, A.L.1
Cramer, P.2
Fu, J.3
Bushnell, D.A.4
Kornberg, R.D.5
-
99
-
-
34248349170
-
Two proton transfers in the transition state for nucleotidyl transfer catalyzed by RNA- and DNA-dependent RNA and DNA polymerases
-
Castro, C.; Smidansky, E.; Maksimchuk, K. R.; Arnold, J. J.; Korneeva, V. S.; Gotte, M.; Konigsberg, W.; Cameron, C. E. Two proton transfers in the transition state for nucleotidyl transfer catalyzed by RNA- and DNA-dependent RNA and DNA polymerases Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 4267
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 4267
-
-
Castro, C.1
Smidansky, E.2
Maksimchuk, K.R.3
Arnold, J.J.4
Korneeva, V.S.5
Gotte, M.6
Konigsberg, W.7
Cameron, C.E.8
-
100
-
-
0030727136
-
Determinants of ribose specificity in RNA polymerization: Effects of Mn2+ and deoxynucleoside monophosphate incorporation into transcripts
-
Huang, Y.; Beaudry, A.; McSwiggen, J.; Sousa, R. Determinants of ribose specificity in RNA polymerization: effects of Mn2+ and deoxynucleoside monophosphate incorporation into transcripts Biochemistry 1997, 36, 13718
-
(1997)
Biochemistry
, vol.36
, pp. 13718
-
-
Huang, Y.1
Beaudry, A.2
McSwiggen, J.3
Sousa, R.4
-
101
-
-
0026766429
-
Di-myo-inositol-1,1'-phosphate: A new inositol phosphate isolated from Pyrococcus woesei
-
Scholz, S.; Sonnenbichler, J.; Schafer, W.; Hensel, R. Di-myo-inositol-1,1'-phosphate: a new inositol phosphate isolated from Pyrococcus woesei FEBS Lett. 1992, 306, 239
-
(1992)
FEBS Lett.
, vol.306
, pp. 239
-
-
Scholz, S.1
Sonnenbichler, J.2
Schafer, W.3
Hensel, R.4
-
102
-
-
77951215195
-
Rearrangement of the RNA polymerase subunit H and the lower jaw in archaeal elongation complexes
-
Grunberg, S.; Reich, C.; Zeller, M. E.; Bartlett, M. S.; Thomm, M. Rearrangement of the RNA polymerase subunit H and the lower jaw in archaeal elongation complexes Nucleic Acids Res. 2010, 38, 1950
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 1950
-
-
Grunberg, S.1
Reich, C.2
Zeller, M.E.3
Bartlett, M.S.4
Thomm, M.5
-
103
-
-
59749087477
-
Mutational studies of archaeal RNA polymerase and analysis of hybrid RNA polymerases
-
Thomm, M.; Reich, C.; Grunberg, S.; Naji, S. Mutational studies of archaeal RNA polymerase and analysis of hybrid RNA polymerases Biochem. Soc. Trans. 2009, 37, 18
-
(2009)
Biochem. Soc. Trans.
, vol.37
, pp. 18
-
-
Thomm, M.1
Reich, C.2
Grunberg, S.3
Naji, S.4
-
104
-
-
70450171352
-
RNA polymerase II-TFIIB structure and mechanism of transcription initiation
-
Kostrewa, D.; Zeller, M. E.; Armache, K. J.; Seizl, M.; Leike, K.; Thomm, M.; Cramer, P. RNA polymerase II-TFIIB structure and mechanism of transcription initiation Nature 2009, 462, 323
-
(2009)
Nature
, vol.462
, pp. 323
-
-
Kostrewa, D.1
Zeller, M.E.2
Armache, K.J.3
Seizl, M.4
Leike, K.5
Thomm, M.6
Cramer, P.7
-
105
-
-
0037349612
-
The Southeast Collaboratory for Structural Genomics: A high-throughput gene to structure factory
-
Adams, M. W.; Dailey, H. A.; DeLucas, L. J.; Luo, M.; Prestegard, J. H.; Rose, J. P.; Wang, B. C. The Southeast Collaboratory for Structural Genomics: a high-throughput gene to structure factory Acc. Chem. Res. 2003, 36, 191
-
(2003)
Acc. Chem. Res.
, vol.36
, pp. 191
-
-
Adams, M.W.1
Dailey, H.A.2
Delucas, L.J.3
Luo, M.4
Prestegard, J.H.5
Rose, J.P.6
Wang, B.C.7
-
106
-
-
0037349370
-
Facilities and methods for the high-throughput crystal structural analysis of human proteins
-
Heinemann, U.; Bussow, K.; Mueller, U.; Umbach, P. Facilities and methods for the high-throughput crystal structural analysis of human proteins Acc. Chem. Res. 2003, 36, 157
-
(2003)
Acc. Chem. Res.
, vol.36
, pp. 157
-
-
Heinemann, U.1
Bussow, K.2
Mueller, U.3
Umbach, P.4
-
107
-
-
26444608688
-
New York-Structural GenomiX Research Consortium (NYSGXRC): A large scale center for the protein structure initiative
-
Bonanno, J. B.; Almo, S. C.; Bresnick, A.; Chance, M. R.; Fiser, A.; Swaminathan, S.; Jiang, J.; Studier, F. W.; Shapiro, L.; Lima, C. D.; Gaasterland, T. M.; Sali, A.; Bain, K.; Feil, I.; Gao, X.; Lorimer, D.; Ramos, A.; Sauder, J. M.; Wasserman, S. R.; Emtage, S.; D'Amico, K. L.; Burley, S. K. New York-Structural GenomiX Research Consortium (NYSGXRC): a large scale center for the protein structure initiative J. Struct. Funct. Genomics 2005, 6, 225
-
(2005)
J. Struct. Funct. Genomics
, vol.6
, pp. 225
-
-
Bonanno, J.B.1
Almo, S.C.2
Bresnick, A.3
Chance, M.R.4
Fiser, A.5
Swaminathan, S.6
Jiang, J.7
Studier, F.W.8
Shapiro, L.9
Lima, C.D.10
Gaasterland, T.M.11
Sali, A.12
Bain, K.13
Feil, I.14
Gao, X.15
Lorimer, D.16
Ramos, A.17
Sauder, J.M.18
Wasserman, S.R.19
Emtage, S.20
D'Amico, K.L.21
Burley, S.K.22
more..
-
108
-
-
0034957669
-
High-throughput proteomics: Protein expression and purification in the postgenomic world
-
Lesley, S. A. High-throughput proteomics: protein expression and purification in the postgenomic world Protein Expression Purif. 2001, 22, 159
-
(2001)
Protein Expression Purif.
, vol.22
, pp. 159
-
-
Lesley, S.A.1
-
109
-
-
33750105832
-
Automation, parallelism, and robotics for proteomics
-
Alterovitz, G.; Liu, J.; Chow, J.; Ramoni, M. F. Automation, parallelism, and robotics for proteomics Proteomics 2006, 6, 4016
-
(2006)
Proteomics
, vol.6
, pp. 4016
-
-
Alterovitz, G.1
Liu, J.2
Chow, J.3
Ramoni, M.F.4
-
110
-
-
84934436669
-
″system 48″ high-throughput cloning and protein expression analysis
-
Abdullah, J. M.; Joachimiak, A.; Collart, F. R. ″System 48″ high-throughput cloning and protein expression analysis Methods Mol. Biol. 2009, 498, 117-27
-
(2009)
Methods Mol. Biol.
, vol.498
, pp. 117-127
-
-
Abdullah, J.M.1
Joachimiak, A.2
Collart, F.R.3
-
111
-
-
70349901077
-
High-throughput crystallography for structural genomics
-
Joachimiak, A. High-throughput crystallography for structural genomics Curr. Opin. Struct. Biol. 2009, 19, 573
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 573
-
-
Joachimiak, A.1
-
113
-
-
0018079391
-
Mutagenesis at a specific position in a DNA sequence
-
Hutchison, C. A.; Phillips, S.; Edgell, M. H.; Gillam, S.; Jahnke, P.; Smith, M. Mutagenesis at a specific position in a DNA sequence J. Biol. Chem. 1978, 253, 6551-6560
-
(1978)
J. Biol. Chem.
, vol.253
, pp. 6551-6560
-
-
Hutchison, C.A.1
Phillips, S.2
Edgell, M.H.3
Gillam, S.4
Jahnke, P.5
Smith, M.6
-
114
-
-
0031574019
-
Approaches to DNA mutagenesis: An overview
-
Ling, M. M.; Robinson, B. H. Approaches to DNA mutagenesis: an overview Anal. Biochem. 1997, 254, 157
-
(1997)
Anal. Biochem.
, vol.254
, pp. 157
-
-
Ling, M.M.1
Robinson, B.H.2
-
115
-
-
79957998371
-
Protein stability by number: High-throughput and statistical approaches to one of protein science's most difficult problems
-
Magliery, T. J.; Lavinder, J. J.; Sullivan, B. J. Protein stability by number: high-throughput and statistical approaches to one of protein science's most difficult problems Curr. Opin. Chem. Biol. 2011, 15, 443
-
(2011)
Curr. Opin. Chem. Biol.
, vol.15
, pp. 443
-
-
Magliery, T.J.1
Lavinder, J.J.2
Sullivan, B.J.3
-
116
-
-
79960976768
-
UniProt Knowledgebase: A hub of integrated protein data
-
Magrane, M.; Consortium, U. UniProt Knowledgebase: a hub of integrated protein data Database 2011, 2011, bar009
-
(2011)
Database
, vol.2011
, pp. 009
-
-
Magrane, M.1
Consortium, U.2
-
117
-
-
0024403619
-
High-resolution epitope mapping of Hgh-receptor Interactions by alanine-scanning mutagenesis
-
Cunningham, B. C.; Wells, J. A. High-resolution epitope mapping of Hgh-receptor Interactions by alanine-scanning mutagenesis Science 1989, 244, 1081
-
(1989)
Science
, vol.244
, pp. 1081
-
-
Cunningham, B.C.1
Wells, J.A.2
-
118
-
-
77950234229
-
Lessons from the lysozyme of phage T4
-
Baase, W. A.; Liu, L.; Tronrud, D. E.; Matthews, B. W. Lessons from the lysozyme of phage T4 Protein Sci. 2010, 19, 631
-
(2010)
Protein Sci.
, vol.19
, pp. 631
-
-
Baase, W.A.1
Liu, L.2
Tronrud, D.E.3
Matthews, B.W.4
-
119
-
-
0027716138
-
The role of backbone flexibility in the accommodation of variants that repack the core of T4 lysozyme
-
Baldwin, E. P.; Hajiseyedjavadi, O.; Baase, W. A.; Matthews, B. W. The role of backbone flexibility in the accommodation of variants that repack the core of T4 lysozyme Science 1993, 262, 1715
-
(1993)
Science
, vol.262
, pp. 1715
-
-
Baldwin, E.P.1
Hajiseyedjavadi, O.2
Baase, W.A.3
Matthews, B.W.4
-
120
-
-
0029892667
-
Thermodynamic and structural compensation in ″size-switch″ core repacking variants of bacteriophage T4 lysozyme
-
Baldwin, E.; Xu, J.; Hajiseyedjavadi, O.; Baase, W. A.; Matthews, B. W. Thermodynamic and structural compensation in ″size-switch″ core repacking variants of bacteriophage T4 lysozyme J. Mol. Biol. 1996, 259, 542
-
(1996)
J. Mol. Biol.
, vol.259
, pp. 542
-
-
Baldwin, E.1
Xu, J.2
Hajiseyedjavadi, O.3
Baase, W.A.4
Matthews, B.W.5
-
121
-
-
84865064881
-
Performance of computational tools in evaluating the functional impact of laboratory-induced amino acid mutations
-
Gray, V. E.; Kukurba, K. R.; Kumar, S. Performance of computational tools in evaluating the functional impact of laboratory-induced amino acid mutations Bioinformatics 2012, 28, 2093-6
-
(2012)
Bioinformatics
, vol.28
, pp. 2093-2096
-
-
Gray, V.E.1
Kukurba, K.R.2
Kumar, S.3
-
122
-
-
49549118056
-
Comprehensive in silico mutagenesis highlights functionally important residues in proteins
-
Bromberg, Y.; Rost, B. Comprehensive in silico mutagenesis highlights functionally important residues in proteins Bioinformatics 2008, 24, i207
-
(2008)
Bioinformatics
, vol.24
, pp. 207
-
-
Bromberg, Y.1
Rost, B.2
-
123
-
-
0028916599
-
A hot-spot of binding-energy in a hormone-receptor interface
-
Clackson, T.; Wells, J. A. A hot-spot of binding-energy in a hormone-receptor interface Science 1995, 267, 383
-
(1995)
Science
, vol.267
, pp. 383
-
-
Clackson, T.1
Wells, J.A.2
-
124
-
-
0035066602
-
ASEdb: A database of alanine mutations and their effects on the free energy of binding in protein interactions
-
Thorn, K. S.; Bogan, A. A. ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions Bioinformatics 2001, 17, 284
-
(2001)
Bioinformatics
, vol.17
, pp. 284
-
-
Thorn, K.S.1
Bogan, A.A.2
-
125
-
-
34548779127
-
Hot spots - A review of the protein-protein interface determinant amino-acid residues
-
Moreira, I. S.; Fernandes, P. A.; Ramos, M. J. Hot spots - a review of the protein-protein interface determinant amino-acid residues Proteins 2007, 68, 803
-
(2007)
Proteins
, vol.68
, pp. 803
-
-
Moreira, I.S.1
Fernandes, P.A.2
Ramos, M.J.3
-
126
-
-
0031914895
-
Steric hindrance mutagenesis versus alanine scan in mapping of ligand binding sites in the tachykinin NK1 receptor
-
Holst, B.; Zoffmann, S.; Elling, C. E.; Hjorth, S. A.; Schwartz, T. W. Steric hindrance mutagenesis versus alanine scan in mapping of ligand binding sites in the tachykinin NK1 receptor Mol. Pharmacol. 1998, 53, 166
-
(1998)
Mol. Pharmacol.
, vol.53
, pp. 166
-
-
Holst, B.1
Zoffmann, S.2
Elling, C.E.3
Hjorth, S.A.4
Schwartz, T.W.5
-
127
-
-
0039134578
-
Shape and specificity in mammalian 15-lipoxygenase active site. the functional interplay of sequence determinants for the reaction specificity
-
Borngraber, S.; Browner, M.; Gillmor, S.; Gerth, C.; Anton, M.; Fletterick, R.; Kuhn, H. Shape and specificity in mammalian 15-lipoxygenase active site. The functional interplay of sequence determinants for the reaction specificity J. Biol. Chem. 1999, 274, 37345
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 37345
-
-
Borngraber, S.1
Browner, M.2
Gillmor, S.3
Gerth, C.4
Anton, M.5
Fletterick, R.6
Kuhn, H.7
-
128
-
-
4644294110
-
Screening and optimizing protein production in E. Coli
-
Hewitt, L.; McDonnell, J. M. Screening and optimizing protein production in E. coli Methods Mol. Biol. 2004, 278, 1
-
(2004)
Methods Mol. Biol.
, vol.278
, pp. 1
-
-
Hewitt, L.1
McDonnell, J.M.2
-
129
-
-
65649135871
-
Practical protocols for production of very high yields of recombinant proteins using Escherichia coli
-
Sivashanmugam, A.; Murray, V.; Cui, C.; Zhang, Y.; Wang, J.; Li, Q. Practical protocols for production of very high yields of recombinant proteins using Escherichia coli Protein Sci. 2009, 18, 936
-
(2009)
Protein Sci.
, vol.18
, pp. 936
-
-
Sivashanmugam, A.1
Murray, V.2
Cui, C.3
Zhang, Y.4
Wang, J.5
Li, Q.6
-
130
-
-
68149131918
-
The baffled microtiter plate: Increased oxygen transfer and improved online monitoring in small scale fermentations
-
Funke, M.; Diederichs, S.; Kensy, F.; Muller, C.; Buchs, J. The baffled microtiter plate: increased oxygen transfer and improved online monitoring in small scale fermentations Biotechnol. Bioeng. 2009, 103, 1118
-
(2009)
Biotechnol. Bioeng.
, vol.103
, pp. 1118
-
-
Funke, M.1
Diederichs, S.2
Kensy, F.3
Muller, C.4
Buchs, J.5
-
131
-
-
14844294424
-
Protein production by auto-induction in high density shaking cultures
-
Studier, F. W. Protein production by auto-induction in high density shaking cultures Protein Expression Purif. 2005, 41, 207
-
(2005)
Protein Expression Purif.
, vol.41
, pp. 207
-
-
Studier, F.W.1
-
132
-
-
0037046271
-
Carbon catabolite repression in bacteria: Choice of the carbon source and autoregulatory limitation of sugar utilization
-
Bruckner, R.; Titgemeyer, F. Carbon catabolite repression in bacteria: choice of the carbon source and autoregulatory limitation of sugar utilization FEMS Microbiol. Lett. 2002, 209, 141
-
(2002)
FEMS Microbiol. Lett.
, vol.209
, pp. 141
-
-
Bruckner, R.1
Titgemeyer, F.2
-
133
-
-
20144387833
-
Robotic cloning and protein production platform of the Northeast Structural Genomics Consortium
-
Acton, T. B.; Gunsalus, K. C.; Xiao, R.; Ma, L. C.; Aramini, J.; Baran, M. C.; Chiang, Y. W.; Climent, T.; Cooper, B.; Denissova, N. G.; Douglas, S. M.; Everett, J. K.; Ho, C. K.; Macapagal, D.; Rajan, P. K.; Shastry, R.; Shih, L. Y.; Swapna, G. V.; Wilson, M.; Wu, M.; Gerstein, M.; Inouye, M.; Hunt, J. F.; Montelione, G. T. Robotic cloning and protein production platform of the Northeast Structural Genomics Consortium Methods Enzymol. 2005, 394, 210
-
(2005)
Methods Enzymol.
, vol.394
, pp. 210
-
-
Acton, T.B.1
Gunsalus, K.C.2
Xiao, R.3
Ma, L.C.4
Aramini, J.5
Baran, M.C.6
Chiang, Y.W.7
Climent, T.8
Cooper, B.9
Denissova, N.G.10
Douglas, S.M.11
Everett, J.K.12
Ho, C.K.13
MacApagal, D.14
Rajan, P.K.15
Shastry, R.16
Shih, L.Y.17
Swapna, G.V.18
Wilson, M.19
Wu, M.20
Gerstein, M.21
Inouye, M.22
Hunt, J.F.23
Montelione, G.T.24
more..
-
134
-
-
84868294651
-
High-throughput purification of affinity-tagged recombinant proteins
-
Wiesler, S. C.; Weinzierl, R. O. High-throughput purification of affinity-tagged recombinant proteins J. Visualized Exp. 2012, 66, e4110
-
(2012)
J. Visualized Exp.
, vol.66
, pp. 4110
-
-
Wiesler, S.C.1
Weinzierl, R.O.2
-
135
-
-
0019512326
-
Relation between hen egg white lysozyme and bacteriophage T4 lysozyme: Evolutionary implications
-
Matthews, B. W.; Remington, S. J.; Grutter, M. G.; Anderson, W. F. Relation between hen egg white lysozyme and bacteriophage T4 lysozyme: evolutionary implications J. Mol. Biol. 1981, 147, 545
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 545
-
-
Matthews, B.W.1
Remington, S.J.2
Grutter, M.G.3
Anderson, W.F.4
-
136
-
-
0001713635
-
Isolation and properties of an exocellular nuclease of Serratia Marcescens
-
Eaves, G. N.; Jeffries, C. D. Isolation and properties of an exocellular nuclease of Serratia Marcescens J. Bacteriol. 1963, 85, 273
-
(1963)
J. Bacteriol.
, vol.85
, pp. 273
-
-
Eaves, G.N.1
Jeffries, C.D.2
-
137
-
-
0014670660
-
An extracellular nuclease from Serratia marcescens. I. Purification and some properties of the enzyme
-
Nestle, M.; Roberts, W. K. An extracellular nuclease from Serratia marcescens. I. Purification and some properties of the enzyme J. Biol. Chem. 1969, 244, 5213
-
(1969)
J. Biol. Chem.
, vol.244
, pp. 5213
-
-
Nestle, M.1
Roberts, W.K.2
-
138
-
-
0014670710
-
An extracellular nuclease from Serratia marcescens. II. Specificity of the enzyme
-
Nestle, M.; Roberts, W. K. An extracellular nuclease from Serratia marcescens. II. Specificity of the enzyme J. Biol. Chem. 1969, 244, 5219
-
(1969)
J. Biol. Chem.
, vol.244
, pp. 5219
-
-
Nestle, M.1
Roberts, W.K.2
-
139
-
-
0026015415
-
Crystallization and preliminary crystallographic analysis of a novel nuclease from Serratia marcescens
-
Miller, M. D.; Benedik, M. J.; Sullivan, M. C.; Shipley, N. S.; Krause, K. L. Crystallization and preliminary crystallographic analysis of a novel nuclease from Serratia marcescens J. Mol. Biol. 1991, 222, 27
-
(1991)
J. Mol. Biol.
, vol.222
, pp. 27
-
-
Miller, M.D.1
Benedik, M.J.2
Sullivan, M.C.3
Shipley, N.S.4
Krause, K.L.5
-
140
-
-
84928586175
-
Assays for determination of protein concentration
-
Coligan, J. E. Wiley: New York, Chapter 3, Unit 3 4.
-
Olson, B. J.; Markwell, J. Assays for determination of protein concentration. In Current Protocols in Protein Science; Coligan, J. E., Ed.; Wiley: New York, 2007; Chapter 3, Unit 3 4.
-
(2007)
Current Protocols in Protein Science
-
-
Olson, B.J.1
Markwell, J.2
-
141
-
-
0022186670
-
Measurement of protein using bicinchoninic acid
-
Smith, P. K.; Krohn, R. I.; Hermanson, G. T.; Mallia, A. K.; Gartner, F. H.; Provenzano, M. D.; Fujimoto, E. K.; Goeke, N. M.; Olson, B. J.; Klenk, D. C. Measurement of protein using bicinchoninic acid Anal. Biochem. 1985, 150, 76
-
(1985)
Anal. Biochem.
, vol.150
, pp. 76
-
-
Smith, P.K.1
Krohn, R.I.2
Hermanson, G.T.3
Mallia, A.K.4
Gartner, F.H.5
Provenzano, M.D.6
Fujimoto, E.K.7
Goeke, N.M.8
Olson, B.J.9
Klenk, D.C.10
-
142
-
-
0031568917
-
An automated high throughput filtration assay: Application to polymerase inhibitor identification
-
Wu, P.; Daniel-Issakani, S.; LaMarco, K.; Strulovici, B. An automated high throughput filtration assay: application to polymerase inhibitor identification Anal. Biochem. 1997, 245, 226
-
(1997)
Anal. Biochem.
, vol.245
, pp. 226
-
-
Wu, P.1
Daniel-Issakani, S.2
Lamarco, K.3
Strulovici, B.4
-
143
-
-
34447297323
-
Energetics of protein folding
-
Baldwin, R. L. Energetics of protein folding J. Mol. Biol. 2007, 371, 283
-
(2007)
J. Mol. Biol.
, vol.371
, pp. 283
-
-
Baldwin, R.L.1
-
144
-
-
70549109331
-
Forks, pincers, and triggers: The tools for nucleotide incorporation and translocation in multi-subunit RNA polymerases
-
Erie, D. A.; Kennedy, S. R. Forks, pincers, and triggers: the tools for nucleotide incorporation and translocation in multi-subunit RNA polymerases Curr. Opin. Struct. Biol. 2009, 19, 708
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 708
-
-
Erie, D.A.1
Kennedy, S.R.2
-
145
-
-
0035827342
-
Structural biology - A marvellous machine for making messages
-
Klug, A. Structural biology-A marvellous machine for making messages Science 2001, 292, 1844
-
(2001)
Science
, vol.292
, pp. 1844
-
-
Klug, A.1
-
146
-
-
12944320326
-
Machinations of a maxwellian demon
-
Sousa, R. Machinations of a maxwellian demon Cell 2005, 120, 155
-
(2005)
Cell
, vol.120
, pp. 155
-
-
Sousa, R.1
-
147
-
-
22844436748
-
The involvement of the aspartate triad of the active center in all catalytic activities of multisubunit RNA polymerase
-
Sosunov, V.; Zorov, S.; Sosunova, E.; Nikolaev, A.; Zakeyeva, I.; Bass, I.; Goldfarb, A.; Nikiforov, V.; Severinov, K.; Mustaev, A. The involvement of the aspartate triad of the active center in all catalytic activities of multisubunit RNA polymerase Nucleic Acids Res. 2005, 33, 4202
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 4202
-
-
Sosunov, V.1
Zorov, S.2
Sosunova, E.3
Nikolaev, A.4
Zakeyeva, I.5
Bass, I.6
Goldfarb, A.7
Nikiforov, V.8
Severinov, K.9
Mustaev, A.10
-
148
-
-
70549108206
-
Macromolecular micromovements: How RNA polymerase translocates
-
Svetlov, V.; Nudler, E. Macromolecular micromovements: how RNA polymerase translocates Curr. Opin. Struct. Biol. 2009, 19, 701
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 701
-
-
Svetlov, V.1
Nudler, E.2
-
149
-
-
77953711880
-
Translocation by multi-subunit RNA polymerases
-
Kireeva, M.; Kashlev, M.; Burton, Z. F. Translocation by multi-subunit RNA polymerases Biochim. Biophys. Acta 2010, 1799, 389
-
(2010)
Biochim. Biophys. Acta
, vol.1799
, pp. 389
-
-
Kireeva, M.1
Kashlev, M.2
Burton, Z.F.3
-
150
-
-
28544432440
-
Direct observation of base-pair stepping by RNA polymerase
-
Abbondanzieri, E. A.; Greenleaf, W. J.; Shaevitz, J. W.; Landick, R.; Block, S. M. Direct observation of base-pair stepping by RNA polymerase Nature 2005, 438, 460
-
(2005)
Nature
, vol.438
, pp. 460
-
-
Abbondanzieri, E.A.1
Greenleaf, W.J.2
Shaevitz, J.W.3
Landick, R.4
Block, S.M.5
-
151
-
-
0029416931
-
Transcription against an applied force
-
Yin, H.; Wang, M. D.; Svoboda, K.; Landick, R.; Block, S. M.; Gelles, J. Transcription against an applied force Science 1995, 270, 1653
-
(1995)
Science
, vol.270
, pp. 1653
-
-
Yin, H.1
Wang, M.D.2
Svoboda, K.3
Landick, R.4
Block, S.M.5
Gelles, J.6
-
152
-
-
66549126163
-
A movie of the RNA polymerase nucleotide addition cycle
-
Brueckner, F.; Ortiz, J.; Cramer, P. A movie of the RNA polymerase nucleotide addition cycle Curr. Opin. Struct. Biol. 2009, 19, 294
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 294
-
-
Brueckner, F.1
Ortiz, J.2
Cramer, P.3
-
153
-
-
84862666457
-
A movie of RNA polymerase II transcription
-
Cheung, A. C.; Cramer, P. A movie of RNA polymerase II transcription Cell 2012, 149, 1431
-
(2012)
Cell
, vol.149
, pp. 1431
-
-
Cheung, A.C.1
Cramer, P.2
-
154
-
-
37249032102
-
Dynamic personalities of proteins
-
Henzler-Wildman, K.; Kern, D. Dynamic personalities of proteins Nature 2007, 450, 964
-
(2007)
Nature
, vol.450
, pp. 964
-
-
Henzler-Wildman, K.1
Kern, D.2
-
155
-
-
36849039429
-
A hierarchy of timescales in protein dynamics is linked to enzyme catalysis
-
Henzler-Wildman, K. A.; Lei, M.; Thai, V.; Kerns, S. J.; Karplus, M.; Kern, D. A hierarchy of timescales in protein dynamics is linked to enzyme catalysis Nature 2007, 450, 913
-
(2007)
Nature
, vol.450
, pp. 913
-
-
Henzler-Wildman, K.A.1
Lei, M.2
Thai, V.3
Kerns, S.J.4
Karplus, M.5
Kern, D.6
-
156
-
-
36849048228
-
Intrinsic motions along an enzymatic reaction trajectory
-
Henzler-Wildman, K. A.; Thai, V.; Lei, M.; Ott, M.; Wolf-Watz, M.; Fenn, T.; Pozharski, E.; Wilson, M. A.; Petsko, G. A.; Karplus, M.; Hubner, C. G.; Kern, D. Intrinsic motions along an enzymatic reaction trajectory Nature 2007, 450, 838
-
(2007)
Nature
, vol.450
, pp. 838
-
-
Henzler-Wildman, K.A.1
Thai, V.2
Lei, M.3
Ott, M.4
Wolf-Watz, M.5
Fenn, T.6
Pozharski, E.7
Wilson, M.A.8
Petsko, G.A.9
Karplus, M.10
Hubner, C.G.11
Kern, D.12
-
157
-
-
64849111005
-
Sending signals dynamically
-
Smock, R. G.; Gierasch, L. M. Sending signals dynamically Science 2009, 324, 198
-
(2009)
Science
, vol.324
, pp. 198
-
-
Smock, R.G.1
Gierasch, L.M.2
-
158
-
-
69049106549
-
A bridge to transcription by RNA polymerase
-
Kaplan, C. D.; Kornberg, R. D. A bridge to transcription by RNA polymerase J. Biol. 2008, 7, 39
-
(2008)
J. Biol.
, vol.7
, pp. 39
-
-
Kaplan, C.D.1
Kornberg, R.D.2
-
159
-
-
84863895244
-
Gene data to hit milestone
-
Baker, M. Gene data to hit milestone Nature 2012, 487, 282
-
(2012)
Nature
, vol.487
, pp. 282
-
-
Baker, M.1
-
160
-
-
84874588078
-
Application of genomics, proteomics and metabolomics in drug discovery, development and clinic
-
Russell, C.; Rahman, A.; Mohammed, A. R. Application of genomics, proteomics and metabolomics in drug discovery, development and clinic Ther. Delivery 2013, 4, 395
-
(2013)
Ther. Delivery
, vol.4
, pp. 395
-
-
Russell, C.1
Rahman, A.2
Mohammed, A.R.3
-
161
-
-
84873411073
-
Data-driven hypotheses
-
van Helden, P. Data-driven hypotheses EMBO Rep. 2013, 14, 104
-
(2013)
EMBO Rep.
, vol.14
, pp. 104
-
-
Van Helden, P.1
-
162
-
-
0345743608
-
Here is the evidence, now what is the hypothesis? The complementary roles of inductive and hypothesis-driven science in the post-genomic era
-
Kell, D. B.; Oliver, S. G. Here is the evidence, now what is the hypothesis? The complementary roles of inductive and hypothesis-driven science in the post-genomic era BioEssays 2004, 26, 99
-
(2004)
BioEssays
, vol.26
, pp. 99
-
-
Kell, D.B.1
Oliver, S.G.2
-
163
-
-
68749100819
-
Philosophies of funding
-
O'Malley, M. A.; Elliott, K. C.; Haufe, C.; Burian, R. M. Philosophies of funding Cell 2009, 138, 611
-
(2009)
Cell
, vol.138
, pp. 611
-
-
O'Malley, M.A.1
Elliott, K.C.2
Haufe, C.3
Burian, R.M.4
-
164
-
-
0035827346
-
Structural basis of transcription: RNA polymerase II at 2.8 angstrom ngstrom resolution
-
Cramer, P.; Bushnell, D. A.; Kornberg, R. D. Structural basis of transcription: RNA polymerase II at 2.8 angstrom ngstrom resolution Science 2001, 292, 1863
-
(2001)
Science
, vol.292
, pp. 1863
-
-
Cramer, P.1
Bushnell, D.A.2
Kornberg, R.D.3
-
165
-
-
77957751076
-
Power law distribution defines structural disorder as a structural element directly linked with function
-
Tompa, P.; Kalmar, L. Power law distribution defines structural disorder as a structural element directly linked with function J. Mol. Biol. 2010, 403, 346
-
(2010)
J. Mol. Biol.
, vol.403
, pp. 346
-
-
Tompa, P.1
Kalmar, L.2
-
166
-
-
84872407990
-
The RNA polymerase bridge helix YFI motif in catalysis, fidelity and translocation
-
Nedialkov, Y. A.; Opron, K.; Assaf, F.; Artsimovitch, I.; Kireeva, M. L.; Kashlev, M.; Cukier, R. I.; Nudler, E.; Burton, Z. F. The RNA polymerase bridge helix YFI motif in catalysis, fidelity and translocation Biochim. Biophys. Acta 2013, 1829, 187
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 187
-
-
Nedialkov, Y.A.1
Opron, K.2
Assaf, F.3
Artsimovitch, I.4
Kireeva, M.L.5
Kashlev, M.6
Cukier, R.I.7
Nudler, E.8
Burton, Z.F.9
-
167
-
-
12944324227
-
A ratchet mechanism of transcription elongation and its control
-
Bar-Nahum, G.; Epshtein, V.; Ruckenstein, A. E.; Rafikov, R.; Mustaev, A.; Nudler, E. A ratchet mechanism of transcription elongation and its control Cell 2005, 120, 183
-
(2005)
Cell
, vol.120
, pp. 183
-
-
Bar-Nahum, G.1
Epshtein, V.2
Ruckenstein, A.E.3
Rafikov, R.4
Mustaev, A.5
Nudler, E.6
-
168
-
-
77955653271
-
Conformational coupling, bridge helix dynamics and active site dehydration in catalysis by RNA polymerase
-
Seibold, S. A.; Singh, B. N.; Zhang, C.; Kireeva, M.; Domecq, C.; Bouchard, A.; Nazione, A. M.; Feig, M.; Cukier, R. I.; Coulombe, B.; Kashlev, M.; Hampsey, M.; Burton, Z. F. Conformational coupling, bridge helix dynamics and active site dehydration in catalysis by RNA polymerase Biochim. Biophys. Acta 2010, 1799, 575
-
(2010)
Biochim. Biophys. Acta
, vol.1799
, pp. 575
-
-
Seibold, S.A.1
Singh, B.N.2
Zhang, C.3
Kireeva, M.4
Domecq, C.5
Bouchard, A.6
Nazione, A.M.7
Feig, M.8
Cukier, R.I.9
Coulombe, B.10
Kashlev, M.11
Hampsey, M.12
Burton, Z.F.13
-
169
-
-
84870983295
-
Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase
-
Kireeva, M. L.; Opron, K.; Seibold, S. A.; Domecq, C.; Cukier, R. I.; Coulombe, B.; Kashlev, M.; Burton, Z. F. Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase BMC Biophys. 2012, 5
-
(2012)
BMC Biophys.
, pp. 5
-
-
Kireeva, M.L.1
Opron, K.2
Seibold, S.A.3
Domecq, C.4
Cukier, R.I.5
Coulombe, B.6
Kashlev, M.7
Burton, Z.F.8
-
170
-
-
0025955349
-
Systematic mutation of bacteriophage T4 lysozyme
-
Rennell, D.; Bouvier, S. E.; Hardy, L. W.; Poteete, A. R. Systematic mutation of bacteriophage T4 lysozyme J. Mol. Biol. 1991, 222, 67
-
(1991)
J. Mol. Biol.
, vol.222
, pp. 67
-
-
Rennell, D.1
Bouvier, S.E.2
Hardy, L.W.3
Poteete, A.R.4
-
171
-
-
33751235874
-
Structural basis of transcription: Role of the trigger loop in substrate specificity and catalysis
-
Wang, D.; Bushnell, D. A.; Westover, K. D.; Kaplan, C. D.; Kornberg, R. D. Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis Cell 2006, 127, 941
-
(2006)
Cell
, vol.127
, pp. 941
-
-
Wang, D.1
Bushnell, D.A.2
Westover, K.D.3
Kaplan, C.D.4
Kornberg, R.D.5
-
172
-
-
77953280325
-
Nanomechanical constraints acting on the catalytic site of cellular RNA polymerases
-
Weinzierl, R. O. Nanomechanical constraints acting on the catalytic site of cellular RNA polymerases Biochem. Soc. Trans. 2010, 38, 428
-
(2010)
Biochem. Soc. Trans.
, vol.38
, pp. 428
-
-
Weinzierl, R.O.1
-
173
-
-
84858225724
-
The Bridge Helix of RNA polymerase acts as a central nanomechanical switchboard for coordinating catalysis and substrate movement
-
Weinzierl, R. O. The Bridge Helix of RNA polymerase acts as a central nanomechanical switchboard for coordinating catalysis and substrate movement Archaea 2011, 2011, 608385
-
(2011)
Archaea
, vol.2011
, pp. 608385
-
-
Weinzierl, R.O.1
-
174
-
-
0034051171
-
The 8-nucleotide-long RNA: DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex
-
Kireeva, M. L.; Komissarova, N.; Waugh, D. S.; Kashlev, M. The 8-nucleotide-long RNA: DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex J. Biol. Chem. 2000, 275, 6530
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 6530
-
-
Kireeva, M.L.1
Komissarova, N.2
Waugh, D.S.3
Kashlev, M.4
-
175
-
-
84871755504
-
Diminishing returns and tradeoffs constrain the laboratory optimization of an enzyme
-
Tokuriki, N.; Jackson, C. J.; Afriat-Jurnou, L.; Wyganowski, K. T.; Tang, R.; Tawfik, D. S. Diminishing returns and tradeoffs constrain the laboratory optimization of an enzyme Nat. Commun. 2012, 3, 1257
-
(2012)
Nat. Commun.
, vol.3
, pp. 1257
-
-
Tokuriki, N.1
Jackson, C.J.2
Afriat-Jurnou, L.3
Wyganowski, K.T.4
Tang, R.5
Tawfik, D.S.6
-
176
-
-
34047240365
-
Transcription and translation are coupled in archaea
-
French, S. L.; Santangelo, T. J.; Beyer, A. L.; Reeve, J. N. Transcription and translation are coupled in archaea Mol. Biol. Evol. 2007, 24, 893
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 893
-
-
French, S.L.1
Santangelo, T.J.2
Beyer, A.L.3
Reeve, J.N.4
-
177
-
-
84877029646
-
RNA polymerase and the ribosome: The close relationship
-
McGary, K.; Nudler, E. RNA polymerase and the ribosome: the close relationship. Curr. Opin. Microbiol. 2013.
-
(2013)
Curr. Opin. Microbiol.
-
-
McGary, K.1
Nudler, E.2
-
178
-
-
84859324213
-
In vitro experimental system for analysis of transcription-translation coupling
-
Castro-Roa, D.; Zenkin, N. In vitro experimental system for analysis of transcription-translation coupling Nucleic Acids Res. 2012, 40, e45
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 45
-
-
Castro-Roa, D.1
Zenkin, N.2
-
179
-
-
0026035521
-
Preventing the synthesis of unused transcripts by Rho factor
-
Richardson, J. P. Preventing the synthesis of unused transcripts by Rho factor Cell 1991, 64, 1047
-
(1991)
Cell
, vol.64
, pp. 1047
-
-
Richardson, J.P.1
-
180
-
-
77951589688
-
Cooperation between translating ribosomes and RNA polymerase in transcription elongation
-
Proshkin, S.; Rahmouni, A. R.; Mironov, A.; Nudler, E. Cooperation between translating ribosomes and RNA polymerase in transcription elongation Science 2010, 328, 504
-
(2010)
Science
, vol.328
, pp. 504
-
-
Proshkin, S.1
Rahmouni, A.R.2
Mironov, A.3
Nudler, E.4
-
181
-
-
84874026084
-
Mutual relationships between transcription and pre-mRNA processing in the synthesis of mRNA
-
Lenasi, T.; Barboric, M. Mutual relationships between transcription and pre-mRNA processing in the synthesis of mRNA RNA 2013, 4, 139
-
(2013)
RNA
, vol.4
, pp. 139
-
-
Lenasi, T.1
Barboric, M.2
-
182
-
-
0141888375
-
A slow RNA polymerase II affects alternative splicing in vivo
-
de la Mata, M.; Alonso, C. R.; Kadener, S.; Fededa, J. P.; Blaustein, M.; Pelisch, F.; Cramer, P.; Bentley, D.; Kornblihtt, A. R. A slow RNA polymerase II affects alternative splicing in vivo Mol. Cell 2003, 12, 525
-
(2003)
Mol. Cell
, vol.12
, pp. 525
-
-
De La Mata, M.1
Alonso, C.R.2
Kadener, S.3
Fededa, J.P.4
Blaustein, M.5
Pelisch, F.6
Cramer, P.7
Bentley, D.8
Kornblihtt, A.R.9
-
183
-
-
0041305816
-
Perturbation of transcription elongation influences the fidelity of internal exon inclusion in Saccharomyces cerevisiae
-
Howe, K. J.; Kane, C. M.; Ares, M., Jr. Perturbation of transcription elongation influences the fidelity of internal exon inclusion in Saccharomyces cerevisiae RNA 2003, 9, 993
-
(2003)
RNA
, vol.9
, pp. 993
-
-
Howe, K.J.1
Kane, C.M.2
Ares Jr., M.3
-
184
-
-
84873819348
-
Isolation and characterization of RNA polymerase rpoB mutations that alter transcription slippage during elongation in Escherichia coli
-
Zhou, Y. N.; Lubkowska, L.; Hui, M.; Court, C.; Chen, S.; Court, D. L.; Strathern, J.; Jin, D. J.; Kashlev, M. Isolation and characterization of RNA polymerase rpoB mutations that alter transcription slippage during elongation in Escherichia coli J. Biol. Chem. 2013, 288, 2700
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 2700
-
-
Zhou, Y.N.1
Lubkowska, L.2
Hui, M.3
Court, C.4
Chen, S.5
Court, D.L.6
Strathern, J.7
Jin, D.J.8
Kashlev, M.9
-
186
-
-
70450236985
-
Activating mutations of the TRPML1 channel revealed by proline-scanning mutagenesis
-
Dong, X. P.; Wang, X.; Shen, D. B.; Chen, S.; Liu, M.; Wang, Y. B.; Mills, E.; Cheng, X. P.; Delling, M.; Xu, H. X. Activating mutations of the TRPML1 channel revealed by proline-scanning mutagenesis J. Biol. Chem. 2009, 284, 32040
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 32040
-
-
Dong, X.P.1
Wang, X.2
Shen, D.B.3
Chen, S.4
Liu, M.5
Wang, Y.B.6
Mills, E.7
Cheng, X.P.8
Delling, M.9
Xu, H.X.10
-
187
-
-
0037071844
-
Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution
-
Vassylyev, D. G.; Sekine, S.; Laptenko, O.; Lee, J.; Vassylyeva, M. N.; Borukhov, S.; Yokoyama, S. Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution Nature 2002, 417, 712
-
(2002)
Nature
, vol.417
, pp. 712
-
-
Vassylyev, D.G.1
Sekine, S.2
Laptenko, O.3
Lee, J.4
Vassylyeva, M.N.5
Borukhov, S.6
Yokoyama, S.7
-
188
-
-
0035827332
-
Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 Å resolution
-
Gnatt, A. L.; Cramer, P.; Fu, J. H.; Bushnell, D. A.; Kornberg, R. D. Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 Å resolution Science 2001, 292, 1876
-
(2001)
Science
, vol.292
, pp. 1876
-
-
Gnatt, A.L.1
Cramer, P.2
Fu, J.H.3
Bushnell, D.A.4
Kornberg, R.D.5
-
189
-
-
0029155035
-
Helix design, prediction and stability
-
Munoz, V.; Serrano, L. Helix design, prediction and stability Curr. Opin. Biotechnol. 1995, 6, 382
-
(1995)
Curr. Opin. Biotechnol.
, vol.6
, pp. 382
-
-
Munoz, V.1
Serrano, L.2
-
190
-
-
44949158886
-
Comprehensive analysis of the helix-X-helix motif in soluble proteins
-
Deville, J.; Rey, J.; Chabbert, M. Comprehensive analysis of the helix-X-helix motif in soluble proteins Proteins 2008, 72, 115
-
(2008)
Proteins
, vol.72
, pp. 115
-
-
Deville, J.1
Rey, J.2
Chabbert, M.3
-
191
-
-
0031808074
-
A helix propensity scale based on experimental studies of peptides and proteins
-
Pace, C. N.; Scholtz, J. M. A helix propensity scale based on experimental studies of peptides and proteins Biophys. J. 1998, 75, 422
-
(1998)
Biophys. J.
, vol.75
, pp. 422
-
-
Pace, C.N.1
Scholtz, J.M.2
-
192
-
-
33746267369
-
Alpha-helix stabilization by alanine relative to glycine: Roles of polar and apolar solvent exposures and of backbone entropy
-
Lopez-Llano, J.; Campos, L. A.; Sancho, J. Alpha-helix stabilization by alanine relative to glycine: roles of polar and apolar solvent exposures and of backbone entropy Proteins 2006, 64, 769
-
(2006)
Proteins
, vol.64
, pp. 769
-
-
Lopez-Llano, J.1
Campos, L.A.2
Sancho, J.3
-
193
-
-
0026694034
-
Towards an understanding of the arginine-aspartate interaction
-
Mitchell, J. B.; Thornton, J. M.; Singh, J.; Price, S. L. Towards an understanding of the arginine-aspartate interaction J. Mol. Biol. 1992, 226, 251
-
(1992)
J. Mol. Biol.
, vol.226
, pp. 251
-
-
Mitchell, J.B.1
Thornton, J.M.2
Singh, J.3
Price, S.L.4
-
194
-
-
0035800850
-
Activation of the beta 2-adrenergic receptor involves disruption of an ionic lock between the cytoplasmic ends of transmembrane segments 3 and 6
-
Ballesteros, J. A.; Jensen, A. D.; Liapakis, G.; Rasmussen, S. G.; Shi, L.; Gether, U.; Javitch, J. A. Activation of the beta 2-adrenergic receptor involves disruption of an ionic lock between the cytoplasmic ends of transmembrane segments 3 and 6 J. Biol. Chem. 2001, 276, 29171
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 29171
-
-
Ballesteros, J.A.1
Jensen, A.D.2
Liapakis, G.3
Rasmussen, S.G.4
Shi, L.5
Gether, U.6
Javitch, J.A.7
-
195
-
-
84873371131
-
Modeling active GPCR conformations
-
Taddese, B.; Simpson, L. M.; Wall, I. D.; Blaney, F. E.; Reynolds, C. A. Modeling active GPCR conformations Methods Enzymol. 2013, 522, 21
-
(2013)
Methods Enzymol.
, vol.522
, pp. 21
-
-
Taddese, B.1
Simpson, L.M.2
Wall, I.D.3
Blaney, F.E.4
Reynolds, C.A.5
-
196
-
-
84858164791
-
Action of molecular switches in GPCRs - Theoretical and experimental studies
-
Trzaskowski, B.; Latek, D.; Yuan, S.; Ghoshdastider, U.; Debinski, A.; Filipek, S. Action of molecular switches in GPCRs - theoretical and experimental studies Curr. Med. Chem. 2012, 19, 1090
-
(2012)
Curr. Med. Chem.
, vol.19
, pp. 1090
-
-
Trzaskowski, B.1
Latek, D.2
Yuan, S.3
Ghoshdastider, U.4
Debinski, A.5
Filipek, S.6
-
197
-
-
79551482308
-
Cation-π interactions induce kinking of a molecular hinge in the RNA polymerase bridge-helix domain
-
Heindl, H.; Greenwell, P.; Weingarten, N.; Kiss, T.; Terstyanszky, G.; Weinzierl, R. O. Cation-π interactions induce kinking of a molecular hinge in the RNA polymerase bridge-helix domain Biochem. Soc. Trans. 2011, 39, 31
-
(2011)
Biochem. Soc. Trans.
, vol.39
, pp. 31
-
-
Heindl, H.1
Greenwell, P.2
Weingarten, N.3
Kiss, T.4
Terstyanszky, G.5
Weinzierl, R.O.6
-
198
-
-
84860211901
-
Trigger loop dynamics mediate the balance between the transcriptional fidelity and speed of RNA polymerase II
-
Larson, M. H.; Zhou, J.; Kaplan, C. D.; Palangat, M.; Kornberg, R. D.; Landick, R.; Block, S. M. Trigger loop dynamics mediate the balance between the transcriptional fidelity and speed of RNA polymerase II Proc. Natl. Acad. Sci. U.S.A. 2012, 109, 6555
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 6555
-
-
Larson, M.H.1
Zhou, J.2
Kaplan, C.D.3
Palangat, M.4
Kornberg, R.D.5
Landick, R.6
Block, S.M.7
-
199
-
-
78650310283
-
Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein
-
Tagami, S.; Sekine, S.; Kumarevel, T.; Hino, N.; Murayama, Y.; Kamegamori, S.; Yamamoto, M.; Sakamoto, K.; Yokoyama, S. Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein Nature 2010, 468, 978
-
(2010)
Nature
, vol.468
, pp. 978
-
-
Tagami, S.1
Sekine, S.2
Kumarevel, T.3
Hino, N.4
Murayama, Y.5
Kamegamori, S.6
Yamamoto, M.7
Sakamoto, K.8
Yokoyama, S.9
-
200
-
-
84873323216
-
Structural basis of transcriptional pausing in bacteria
-
Weixlbaumer, A.; Leon, K.; Landick, R.; Darst, S. A. Structural basis of transcriptional pausing in bacteria Cell 2013, 152, 431
-
(2013)
Cell
, vol.152
, pp. 431
-
-
Weixlbaumer, A.1
Leon, K.2
Landick, R.3
Darst, S.A.4
-
201
-
-
73149106601
-
Allosteric control of catalysis by the F loop of RNA polymerase
-
Miropolskaya, N.; Artsimovitch, I.; Klimasauskas, S.; Nikiforov, V.; Kulbachinskiy, A. Allosteric control of catalysis by the F loop of RNA polymerase Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 18942
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 18942
-
-
Miropolskaya, N.1
Artsimovitch, I.2
Klimasauskas, S.3
Nikiforov, V.4
Kulbachinskiy, A.5
-
202
-
-
79952267747
-
Modulation of RNA polymerase activity through the trigger loop folding
-
Miropolskaya, N.; Nikiforov, V.; Klimasauskas, S.; Artsimovitch, I.; Kulbachinskiy, A. Modulation of RNA polymerase activity through the trigger loop folding Transcription 2010, 1, 89
-
(2010)
Transcription
, vol.1
, pp. 89
-
-
Miropolskaya, N.1
Nikiforov, V.2
Klimasauskas, S.3
Artsimovitch, I.4
Kulbachinskiy, A.5
-
203
-
-
78649527702
-
The bridge helix coordinates movements of modules in RNA polymerase
-
Hein, P. P.; Landick, R. The bridge helix coordinates movements of modules in RNA polymerase BMC Biol. 2010, 8, 141
-
(2010)
BMC Biol.
, vol.8
, pp. 141
-
-
Hein, P.P.1
Landick, R.2
-
204
-
-
34547204502
-
A central role of the RNA polymerase trigger loop in active-site rearrangement during transcriptional pausing
-
Toulokhonov, I.; Zhang, J.; Palangat, M.; Landick, R. A central role of the RNA polymerase trigger loop in active-site rearrangement during transcriptional pausing Mol. Cell 2007, 27, 406
-
(2007)
Mol. Cell
, vol.27
, pp. 406
-
-
Toulokhonov, I.1
Zhang, J.2
Palangat, M.3
Landick, R.4
-
205
-
-
61449250649
-
Functional divergence in the growing family of RNA polymerases
-
Landick, R. Functional divergence in the growing family of RNA polymerases Structure 2009, 17, 323
-
(2009)
Structure
, vol.17
, pp. 323
-
-
Landick, R.1
-
206
-
-
84870942752
-
In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing
-
Haag, J. R.; Ream, T. S.; Marasco, M.; Nicora, C. D.; Norbeck, A. D.; Pasa-Tolic, L.; Pikaard, C. S. In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing Mol. Cell 2012, 48, 811
-
(2012)
Mol. Cell
, vol.48
, pp. 811
-
-
Haag, J.R.1
Ream, T.S.2
Marasco, M.3
Nicora, C.D.4
Norbeck, A.D.5
Pasa-Tolic, L.6
Pikaard, C.S.7
-
207
-
-
33645215246
-
Under the microscope: Arcobacter
-
Snelling, W. J.; Matsuda, M.; Moore, J. E.; Dooley, J. S. Under the microscope: Arcobacter Lett. Appl. Microbiol. 2006, 42, 7
-
(2006)
Lett. Appl. Microbiol.
, vol.42
, pp. 7
-
-
Snelling, W.J.1
Matsuda, M.2
Moore, J.E.3
Dooley, J.S.4
-
208
-
-
84858778495
-
Scrub typhus: Pathophysiology, clinical manifestations and prognosis
-
Rajapakse, S.; Rodrigo, C.; Fernando, D. Scrub typhus: pathophysiology, clinical manifestations and prognosis Asian Pac. J. Trop. Med. 2012, 5, 261
-
(2012)
Asian Pac. J. Trop. Med.
, vol.5
, pp. 261
-
-
Rajapakse, S.1
Rodrigo, C.2
Fernando, D.3
-
209
-
-
34447499995
-
Structural basis for transcription elongation by bacterial RNA polymerase
-
Vassylyev, D. G.; Vassylyeva, M. N.; Perederina, A.; Tahirov, T. H.; Artsimovitch, I. Structural basis for transcription elongation by bacterial RNA polymerase Nature 2007, 448, 157-62
-
(2007)
Nature
, vol.448
, pp. 157-162
-
-
Vassylyev, D.G.1
Vassylyeva, M.N.2
Perederina, A.3
Tahirov, T.H.4
Artsimovitch, I.5
-
210
-
-
84884483881
-
Advances in integrative modeling of biomolecular complexes
-
Karaca, E.; Bonvin, A. M. Advances in integrative modeling of biomolecular complexes Methods 2012, 59, 372
-
(2012)
Methods
, vol.59
, pp. 372
-
-
Karaca, E.1
Bonvin, A.M.2
-
211
-
-
33645119890
-
Structural perspective on mutations affecting the function of multisubunit RNA polymerases
-
Trinh, V.; Langelier, M. F.; Archambault, J.; Coulombe, B. Structural perspective on mutations affecting the function of multisubunit RNA polymerases Microbiol. Mol. Biol. Rev. 2006, 70, 12
-
(2006)
Microbiol. Mol. Biol. Rev.
, vol.70
, pp. 12
-
-
Trinh, V.1
Langelier, M.F.2
Archambault, J.3
Coulombe, B.4
-
212
-
-
0035988323
-
The genome of Methanosarcina mazei: Evidence for lateral gene transfer between bacteria and archaea
-
Deppenmeier, U.; Johann, A.; Hartsch, T.; Merkl, R.; Schmitz, R. A.; Martinez-Arias, R.; Henne, A.; Wiezer, A.; Baumer, S.; Jacobi, C.; Bruggemann, H.; Lienard, T.; Christmann, A.; Bomeke, M.; Steckel, S.; Bhattacharyya, A.; Lykidis, A.; Overbeek, R.; Klenk, H. P.; Gunsalus, R. P.; Fritz, H. J.; Gottschalk, G. The genome of Methanosarcina mazei: Evidence for lateral gene transfer between bacteria and archaea J. Mol. Microbiol. Biotechnol. 2002, 4, 453
-
(2002)
J. Mol. Microbiol. Biotechnol.
, vol.4
, pp. 453
-
-
Deppenmeier, U.1
Johann, A.2
Hartsch, T.3
Merkl, R.4
Schmitz, R.A.5
Martinez-Arias, R.6
Henne, A.7
Wiezer, A.8
Baumer, S.9
Jacobi, C.10
Bruggemann, H.11
Lienard, T.12
Christmann, A.13
Bomeke, M.14
Steckel, S.15
Bhattacharyya, A.16
Lykidis, A.17
Overbeek, R.18
Klenk, H.P.19
Gunsalus, R.P.20
Fritz, H.J.21
Gottschalk, G.22
more..
-
213
-
-
0037007636
-
A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont
-
Huber, H.; Hohn, M. J.; Rachel, R.; Fuchs, T.; Wimmer, V. C.; Stetter, K. O. A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont Nature 2002, 417, 63-67
-
(2002)
Nature
, vol.417
, pp. 63-67
-
-
Huber, H.1
Hohn, M.J.2
Rachel, R.3
Fuchs, T.4
Wimmer, V.C.5
Stetter, K.O.6
-
214
-
-
0016320853
-
Conformation of Thermolysin
-
Matthews, B. W.; Weaver, L. H.; Kester, W. R. Conformation of Thermolysin J. Biol. Chem. 1974, 249, 8030
-
(1974)
J. Biol. Chem.
, vol.249
, pp. 8030
-
-
Matthews, B.W.1
Weaver, L.H.2
Kester, W.R.3
-
215
-
-
0026656965
-
Polyethylene-glycol enhanced protein refolding
-
Cleland, J. L.; Builder, S. E.; Swartz, J. R.; Winkler, M.; Chang, J. Y.; Wang, D. I. C. Polyethylene-glycol enhanced protein refolding Bio-Technol. 1992, 10, 1013-1019
-
(1992)
Bio-Technol.
, vol.10
, pp. 1013-1019
-
-
Cleland, J.L.1
Builder, S.E.2
Swartz, J.R.3
Winkler, M.4
Chang, J.Y.5
Wang, D.I.C.6
-
216
-
-
51349126098
-
Effect of mixed macromolecular crowding agents on protein folding
-
Zhou, H. X. Effect of mixed macromolecular crowding agents on protein folding Proteins 2008, 72, 1109
-
(2008)
Proteins
, vol.72
, pp. 1109
-
-
Zhou, H.X.1
-
217
-
-
41049090929
-
Macromolecular crowding and confinement: Biochemical, biophysical, and potential physiological consequences
-
Zhou, H. X.; Rivas, G.; Minton, A. P. Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences Annu. Rev. Biophys. 2008, 37, 375
-
(2008)
Annu. Rev. Biophys.
, vol.37
, pp. 375
-
-
Zhou, H.X.1
Rivas, G.2
Minton, A.P.3
-
218
-
-
77049106311
-
Dependence of protein folding stability and dynamics on the density and composition of macromolecular crowders
-
Mittal, J.; Best, R. B. Dependence of protein folding stability and dynamics on the density and composition of macromolecular crowders Biophys. J. 2010, 98, 315
-
(2010)
Biophys. J.
, vol.98
, pp. 315
-
-
Mittal, J.1
Best, R.B.2
-
219
-
-
5444228298
-
Role of arginine in protein refolding, solubilization, and purification
-
Tsumoto, K.; Umetsu, M.; Kumagai, I.; Ejima, D.; Philo, J. S.; Arakawa, T. Role of arginine in protein refolding, solubilization, and purification Biotechnol. Prog. 2004, 20, 1301
-
(2004)
Biotechnol. Prog.
, vol.20
, pp. 1301
-
-
Tsumoto, K.1
Umetsu, M.2
Kumagai, I.3
Ejima, D.4
Philo, J.S.5
Arakawa, T.6
-
221
-
-
84865283412
-
Atomistic modeling of protein-DNA interaction specificity: Progress and applications
-
Liu, L. A.; Bradley, P. Atomistic modeling of protein-DNA interaction specificity: progress and applications Curr. Opin. Struct. Biol. 2012, 22, 397
-
(2012)
Curr. Opin. Struct. Biol.
, vol.22
, pp. 397
-
-
Liu, L.A.1
Bradley, P.2
-
222
-
-
84873526912
-
To milliseconds and beyond: Challenges in the simulation of protein folding
-
Lane, T. J.; Shukla, D.; Beauchamp, K. A.; Pande, V. S. To milliseconds and beyond: challenges in the simulation of protein folding Curr. Opin. Struct. Biol. 2013, 23, 58
-
(2013)
Curr. Opin. Struct. Biol.
, vol.23
, pp. 58
-
-
Lane, T.J.1
Shukla, D.2
Beauchamp, K.A.3
Pande, V.S.4
-
223
-
-
37749001438
-
Single-mutation-induced stability loss in protein lysozyme
-
Ye, L.; Wu, Z.; Eleftheriou, M.; Zhou, R. Single-mutation-induced stability loss in protein lysozyme Biochem. Soc. Trans. 2007, 35, 1551
-
(2007)
Biochem. Soc. Trans.
, vol.35
, pp. 1551
-
-
Ye, L.1
Wu, Z.2
Eleftheriou, M.3
Zhou, R.4
-
224
-
-
34347219018
-
Destruction of long-range interactions by a single mutation in lysozyme
-
Zhou, R.; Eleftheriou, M.; Royyuru, A. K.; Berne, B. J. Destruction of long-range interactions by a single mutation in lysozyme Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 5824
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 5824
-
-
Zhou, R.1
Eleftheriou, M.2
Royyuru, A.K.3
Berne, B.J.4
-
225
-
-
84863069608
-
Dynamics of pyrophosphate ion release and its coupled trigger loop motion from closed to open state in RNA polymerase II
-
Da, L. T.; Wang, D.; Huang, X. H. Dynamics of pyrophosphate ion release and its coupled trigger loop motion from closed to open state in RNA polymerase II J. Am. Chem. Soc. 2012, 134, 2399
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 2399
-
-
Da, L.T.1
Wang, D.2
Huang, X.H.3
-
226
-
-
35948963714
-
Accelerating molecular modeling applications with graphics processors
-
Stone, J. E.; Phillips, J. C.; Freddolino, P. L.; Hardy, D. J.; Trabuco, L. G.; Schulten, K. Accelerating molecular modeling applications with graphics processors J. Comput. Chem. 2007, 28, 2618
-
(2007)
J. Comput. Chem.
, vol.28
, pp. 2618
-
-
Stone, J.E.1
Phillips, J.C.2
Freddolino, P.L.3
Hardy, D.J.4
Trabuco, L.G.5
Schulten, K.6
-
227
-
-
77956286977
-
GPU-accelerated molecular modeling coming of age
-
Stone, J. E.; Hardy, D. J.; Ufimtsev, I. S.; Schulten, K. GPU-accelerated molecular modeling coming of age J. Mol. Graphics Modell. 2010, 29, 116
-
(2010)
J. Mol. Graphics Modell.
, vol.29
, pp. 116
-
-
Stone, J.E.1
Hardy, D.J.2
Ufimtsev, I.S.3
Schulten, K.4
-
228
-
-
77949978021
-
High-throughput all-atom molecular dynamics simulations using distributed computing
-
Buch, I.; Harvey, M. J.; Giorgino, T.; Anderson, D. P.; De Fabritiis, G. High-throughput all-atom molecular dynamics simulations using distributed computing J. Chem. Inf. Model. 2010, 50, 397
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 397
-
-
Buch, I.1
Harvey, M.J.2
Giorgino, T.3
Anderson, D.P.4
De Fabritiis, G.5
-
229
-
-
84860767348
-
Routine Microsecond molecular dynamics simulations with AMBER on GPUs. 1. Generalized Born
-
Gotz, A. W.; Williamson, M. J.; Xu, D.; Poole, D.; Le Grand, S.; Walker, R. C. Routine Microsecond molecular dynamics simulations with AMBER on GPUs. 1. Generalized Born J. Chem. Theory Comput. 2012, 8, 1542
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 1542
-
-
Gotz, A.W.1
Williamson, M.J.2
Xu, D.3
Poole, D.4
Le Grand, S.5
Walker, R.C.6
-
230
-
-
3142716857
-
Accelerated molecular dynamics: A promising and efficient simulation method for biomolecules
-
Hamelberg, D.; Mongan, J.; McCammon, J. A. Accelerated molecular dynamics: A promising and efficient simulation method for biomolecules J. Chem. Phys. 2004, 120, 11919
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 11919
-
-
Hamelberg, D.1
Mongan, J.2
McCammon, J.A.3
-
231
-
-
84866146945
-
Routine access to millisecond time scale events with accelerated molecular dynamics
-
Pierce, L. C.; Salomon-Ferrer, R.; Augusto, F. d. O. C.; McCammon, J. A.; Walker, R. C. Routine access to millisecond time scale events with accelerated molecular dynamics J. Chem. Theory Comput. 2012, 8, 2997
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 2997
-
-
Pierce, L.C.1
Salomon-Ferrer, R.2
Augusto D. F, O.C.3
McCammon, J.A.4
Walker, R.C.5
-
232
-
-
84934438414
-
Enhanced sampling algorithms
-
Mitsutake, A.; Mori, Y.; Okamoto, Y. Enhanced sampling algorithms Methods Mol. Biol. 2013, 924, 153
-
(2013)
Methods Mol. Biol.
, vol.924
, pp. 153
-
-
Mitsutake, A.1
Mori, Y.2
Okamoto, Y.3
-
233
-
-
84866467254
-
Key principles and clinical applications of ″next-generation″ DNA sequencing
-
Rizzo, J. M.; Buck, M. J. Key principles and clinical applications of ″next-generation″ DNA sequencing Cancer Prev. Res. 2012, 5, 887
-
(2012)
Cancer Prev. Res.
, vol.5
, pp. 887
-
-
Rizzo, J.M.1
Buck, M.J.2
-
234
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks, G. E.; Hon, G.; Chandonia, J. M.; Brenner, S. E. WebLogo: a sequence logo generator Genome Res. 2004, 14, 1188
-
(2004)
Genome Res.
, vol.14
, pp. 1188
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
235
-
-
40049091146
-
Prediction of protein functional residues from sequence by probability density estimation
-
Fischer, J. D.; Mayer, C. E.; Soding, J. Prediction of protein functional residues from sequence by probability density estimation Bioinformatics 2008, 24, 613
-
(2008)
Bioinformatics
, vol.24
, pp. 613
-
-
Fischer, J.D.1
Mayer, C.E.2
Soding, J.3
-
236
-
-
23444454552
-
The Amber biomolecular simulation programs
-
Case, D. A.; Cheatham, T. E., III; Darden, T.; Gohlke, H.; Luo, R.; Merz, K. M., Jr.; Onufriev, A.; Simmerling, C.; Wang, B.; Woods, R. J. The Amber biomolecular simulation programs J. Comput. Chem. 2005, 26, 1668
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1668
-
-
Case, D.A.1
Darden, T.2
Gohlke, H.3
Luo, R.4
Merz Jr., K.M.5
Onufriev, A.6
Simmerling, C.7
Wang, B.8
Woods, R.J.9
-
237
-
-
84873719639
-
An overview of the Amber biomolecular simulation package
-
Salomon-Ferrer, R.; Case, D. A.; Walker, R. C. An overview of the Amber biomolecular simulation package WIREs Comput. Mol. Sci. 2013, 3, 198
-
(2013)
WIREs Comput. Mol. Sci.
, vol.3
, pp. 198
-
-
Salomon-Ferrer, R.1
Case, D.A.2
Walker, R.C.3
-
238
-
-
0942276402
-
The interface between self-assembling erythropoietin receptor transmembrane segments corresponds to a membrane-spanning leucine zipper
-
Ruan, W.; Becker, V.; Klingmuller, U.; Langosch, D. The interface between self-assembling erythropoietin receptor transmembrane segments corresponds to a membrane-spanning leucine zipper J. Biol. Chem. 2004, 279, 3273
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 3273
-
-
Ruan, W.1
Becker, V.2
Klingmuller, U.3
Langosch, D.4
-
239
-
-
0037904401
-
A cysteine scan of the inner vestibule of cyclic nucleotide-gated channels reveals architecture and rearrangement of the pore
-
Flynn, G. E.; Zagotta, W. N. A cysteine scan of the inner vestibule of cyclic nucleotide-gated channels reveals architecture and rearrangement of the pore J. Gen. Physiol. 2003, 121, 563
-
(2003)
J. Gen. Physiol.
, vol.121
, pp. 563
-
-
Flynn, G.E.1
Zagotta, W.N.2
-
240
-
-
1342325396
-
Outer pore topology of the ECaC-TRPV5 channel by cysteine scan mutagenesis
-
Dodier, Y.; Banderali, U.; Klein, H.; Topalak, O.; Dafi, O.; Simoes, M.; Bernatchez, G.; Sauve, R.; Parent, L. Outer pore topology of the ECaC-TRPV5 channel by cysteine scan mutagenesis J. Biol. Chem. 2004, 279, 6853
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 6853
-
-
Dodier, Y.1
Banderali, U.2
Klein, H.3
Topalak, O.4
Dafi, O.5
Simoes, M.6
Bernatchez, G.7
Sauve, R.8
Parent, L.9
-
241
-
-
67949114190
-
Construction and functional analyses of a comprehensive sigma54 site-directed mutant library using alanine-cysteine mutagenesis
-
Xiao, Y.; Wigneshweraraj, S. R.; Weinzierl, R.; Wang, Y. P.; Buck, M. Construction and functional analyses of a comprehensive sigma54 site-directed mutant library using alanine-cysteine mutagenesis Nucleic Acids Res. 2009, 37, 4482
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 4482
-
-
Xiao, Y.1
Wigneshweraraj, S.R.2
Weinzierl, R.3
Wang, Y.P.4
Buck, M.5
-
242
-
-
79955775737
-
Cys-X scanning for expansion of active-site residues and modulation of catalytic functions in a glutathione transferase
-
Norrgard, M. A.; Hellman, U.; Mannervik, B. Cys-X scanning for expansion of active-site residues and modulation of catalytic functions in a glutathione transferase J. Biol. Chem. 2011, 286, 16871
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 16871
-
-
Norrgard, M.A.1
Hellman, U.2
Mannervik, B.3
-
243
-
-
33845507897
-
Cysteine-scanning mutagenesis and disulfide mapping studies of the conserved domain of the twin-arginine translocase TatB component
-
Lee, P. A.; Orriss, G. L.; Buchanan, G.; Greene, N. P.; Bond, P. J.; Punginelli, C.; Jack, R. L.; Sansom, M. S. P.; Berks, B. C.; Palmer, T. Cysteine-scanning mutagenesis and disulfide mapping studies of the conserved domain of the twin-arginine translocase TatB component J. Biol. Chem. 2006, 281, 34072
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 34072
-
-
Lee, P.A.1
Orriss, G.L.2
Buchanan, G.3
Greene, N.P.4
Bond, P.J.5
Punginelli, C.6
Jack, R.L.7
Sansom, M.S.P.8
Berks, B.C.9
Palmer, T.10
-
244
-
-
34548208263
-
Cysteine scanning mutagenesis and disulfide mapping studies of the TatA component of the bacterial twin arginine translocase
-
Greene, N. P.; Porcelli, I.; Buchanan, G.; Hicks, M. G.; Schermann, S. M.; Palmer, T.; Berks, B. C. Cysteine scanning mutagenesis and disulfide mapping studies of the TatA component of the bacterial twin arginine translocase J. Biol. Chem. 2007, 282, 23937
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 23937
-
-
Greene, N.P.1
Porcelli, I.2
Buchanan, G.3
Hicks, M.G.4
Schermann, S.M.5
Palmer, T.6
Berks, B.C.7
-
245
-
-
84861754298
-
Cysteine scanning mutagenesis and disulfide mapping analysis of arrangement of GspC and GspD protomers within the type 2 secretion system
-
Wang, X.; Pineau, C.; Gu, S.; Guschinskaya, N.; Pickersgill, R. W.; Shevchik, V. E. Cysteine scanning mutagenesis and disulfide mapping analysis of arrangement of GspC and GspD protomers within the type 2 secretion system J. Biol. Chem. 2012, 287, 19082
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 19082
-
-
Wang, X.1
Pineau, C.2
Gu, S.3
Guschinskaya, N.4
Pickersgill, R.W.5
Shevchik, V.E.6
-
246
-
-
24344432708
-
Investigating the putative glycine hinge in shaker potassium channel
-
Ding, S. H.; Ingleby, L.; Ahern, C. A.; Horn, R. Investigating the putative glycine hinge in shaker potassium channel J. Gen. Physiol. 2005, 126, 213
-
(2005)
J. Gen. Physiol.
, vol.126
, pp. 213
-
-
Ding, S.H.1
Ingleby, L.2
Ahern, C.A.3
Horn, R.4
-
247
-
-
34547120738
-
A histidine scan to probe the flexibility of the rat P2 × 2 receptor zinc-binding site
-
Tittle, R. K.; Power, J. M.; Hume, R. I. A histidine scan to probe the flexibility of the rat P2 × 2 receptor zinc-binding site J. Biol. Chem. 2007, 282, 19526
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 19526
-
-
Tittle, R.K.1
Power, J.M.2
Hume, R.I.3
-
248
-
-
33751513050
-
Secondary structure of a KCNE cytoplasmic domain
-
Rocheleau, J. M.; Gage, S. D.; Kobertz, W. R. Secondary structure of a KCNE cytoplasmic domain J. Gen. Physiol. 2006, 128, 721
-
(2006)
J. Gen. Physiol.
, vol.128
, pp. 721
-
-
Rocheleau, J.M.1
Gage, S.D.2
Kobertz, W.R.3
-
249
-
-
80054701691
-
Engineering an ultra-thermostable beta(1)-adrenoceptor
-
Miller, J. L.; Tate, C. G. Engineering an ultra-thermostable beta(1)-adrenoceptor J. Mol. Biol. 2011, 413, 628
-
(2011)
J. Mol. Biol.
, vol.413
, pp. 628
-
-
Miller, J.L.1
Tate, C.G.2
-
250
-
-
77951247943
-
Lysine-scanning mutagenesis reveals an amendable face of the cyclotide Kalata B1 for the optimization of nematocidal activity
-
Huang, Y. H.; Colgrave, M. L.; Clark, R. J.; Kotze, A. C.; Craik, D. J. Lysine-scanning mutagenesis reveals an amendable face of the cyclotide Kalata B1 for the optimization of nematocidal activity J. Biol. Chem. 2010, 285, 10797
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 10797
-
-
Huang, Y.H.1
Colgrave, M.L.2
Clark, R.J.3
Kotze, A.C.4
Craik, D.J.5
-
251
-
-
0037047296
-
Lysine scanning mutagenesis delineates structural model of the nicotinic receptor ligand binding domain
-
Sine, S. M.; Wang, H. L.; Bren, N. Lysine scanning mutagenesis delineates structural model of the nicotinic receptor ligand binding domain J. Biol. Chem. 2002, 277, 29210
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 29210
-
-
Sine, S.M.1
Wang, H.L.2
Bren, N.3
-
252
-
-
33845964735
-
Proline scanning mutagenesis reveals non-native fold in the molten globule state of equine beta-lactoglobulin
-
Nakagawa, K.; Tokushima, A.; Fujiwara, K.; Ikeguchi, M. Proline scanning mutagenesis reveals non-native fold in the molten globule state of equine beta-lactoglobulin Biochemistry 2006, 45, 15468
-
(2006)
Biochemistry
, vol.45
, pp. 15468
-
-
Nakagawa, K.1
Tokushima, A.2
Fujiwara, K.3
Ikeguchi, M.4
-
253
-
-
84864690557
-
Structural characterization of a trapped folding intermediate of pyrrolidone carboxyl peptidase from a hyperthermophile
-
Mizuguchi, M.; Takeuchi, M.; Ohki, S.; Nabeshima, Y.; Kouno, T.; Aizawa, T.; Demura, M.; Kawano, K.; Yutani, K. Structural characterization of a trapped folding intermediate of pyrrolidone carboxyl peptidase from a hyperthermophile Biochemistry 2012, 51, 6089
-
(2012)
Biochemistry
, vol.51
, pp. 6089
-
-
Mizuguchi, M.1
Takeuchi, M.2
Ohki, S.3
Nabeshima, Y.4
Kouno, T.5
Aizawa, T.6
Demura, M.7
Kawano, K.8
Yutani, K.9
-
254
-
-
1542600164
-
Mapping abeta amyloid fibril secondary structure using scanning proline mutagenesis
-
Williams, A. D.; Portelius, E.; Kheterpal, I.; Guo, J. T.; Cook, K. D.; Xu, Y.; Wetzel, R. Mapping abeta amyloid fibril secondary structure using scanning proline mutagenesis J. Mol. Biol. 2004, 335, 833
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 833
-
-
Williams, A.D.1
Portelius, E.2
Kheterpal, I.3
Guo, J.T.4
Cook, K.D.5
Xu, Y.6
Wetzel, R.7
-
255
-
-
44649118051
-
Site-directed mutagenesis of the hinge peptide from the hemagglutinin protein: Enhancement of the pH-responsive conformational change
-
Casali, M.; Banta, S.; Zambonelli, C.; Megeed, Z.; Yarmush, M. L. Site-directed mutagenesis of the hinge peptide from the hemagglutinin protein: enhancement of the pH-responsive conformational change Protein Eng., Des. Sel. 2008, 21, 395
-
(2008)
Protein Eng., Des. Sel.
, vol.21
, pp. 395
-
-
Casali, M.1
Banta, S.2
Zambonelli, C.3
Megeed, Z.4
Yarmush, M.L.5
-
256
-
-
33746012703
-
Mutational analysis of the p53 core domain L1 loop
-
Zupnick, A.; Prives, C. Mutational analysis of the p53 core domain L1 loop J. Biol. Chem. 2006, 281, 20464
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 20464
-
-
Zupnick, A.1
Prives, C.2
-
257
-
-
69949167524
-
Identification of residues in the drug translocation pathway of the human multidrug resistance P-glycoprotein by arginine mutagenesis
-
Loo, T. W.; Bartlett, M. C.; Clarke, D. M. Identification of residues in the drug translocation pathway of the human multidrug resistance P-glycoprotein by arginine mutagenesis J. Biol. Chem. 2009, 284, 24074
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 24074
-
-
Loo, T.W.1
Bartlett, M.C.2
Clarke, D.M.3
-
258
-
-
15744395819
-
CK2 phosphorylates SSRP1 and inhibits its DNA-binding activity
-
Li, Y. P.; Keller, D. M.; Scott, J. D.; Lu, H. CK2 phosphorylates SSRP1 and inhibits its DNA-binding activity J. Biol. Chem. 2005, 280, 11869
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 11869
-
-
Li, Y.P.1
Keller, D.M.2
Scott, J.D.3
Lu, H.4
-
259
-
-
33947131582
-
Serine scanning: A tool to prove the consequences of N-glycosylation of proteins
-
Weis, R.; Gaisberger, R.; Gruber, K.; Glieder, A. Serine scanning: a tool to prove the consequences of N-glycosylation of proteins J. Biotechnol. 2007, 129, 50
-
(2007)
J. Biotechnol.
, vol.129
, pp. 50
-
-
Weis, R.1
Gaisberger, R.2
Gruber, K.3
Glieder, A.4
-
260
-
-
0029083969
-
Tryptophan-scanning mutagenesis of MotB, an integral membrane protein essential for flagellar rotation in Escherichia coli
-
Sharp, L. L.; Zhou, J.; Blair, D. F. Tryptophan-scanning mutagenesis of MotB, an integral membrane protein essential for flagellar rotation in Escherichia coli Biochemistry 1995, 34, 9166
-
(1995)
Biochemistry
, vol.34
, pp. 9166
-
-
Sharp, L.L.1
Zhou, J.2
Blair, D.F.3
-
261
-
-
84863724751
-
Visualizing transient protein-folding intermediates by tryptophan-scanning mutagenesis
-
Vallee-Belisle, A.; Michnick, S. W. Visualizing transient protein-folding intermediates by tryptophan-scanning mutagenesis Nat. Sruct. Mol. Biol. 2012, 19, 731
-
(2012)
Nat. Sruct. Mol. Biol.
, vol.19
, pp. 731
-
-
Vallee-Belisle, A.1
Michnick, S.W.2
-
262
-
-
0037134516
-
Peroxynitrite-induced nitration of tyrosine hydroxylase - Identification of tyrosines 423, 428, and 432 as sites of modification by matrix-assisted laser desorption ionization time-of-flight mass spectrometry and tyrosine-scanning mutagenesis
-
Kuhn, D. M.; Sadidi, M.; Liu, X. L.; Kreipke, C.; Geddes, T.; Borges, C.; Watson, J. T. Peroxynitrite-induced nitration of tyrosine hydroxylase- Identification of tyrosines 423, 428, and 432 as sites of modification by matrix-assisted laser desorption ionization time-of-flight mass spectrometry and tyrosine-scanning mutagenesis J. Biol. Chem. 2002, 277, 14336
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 14336
-
-
Kuhn, D.M.1
Sadidi, M.2
Liu, X.L.3
Kreipke, C.4
Geddes, T.5
Borges, C.6
Watson, J.T.7
-
263
-
-
0021908666
-
Methanosarcina mazei Lyc, a new methanogenic isolate which produces a disaggregating enzyme
-
Liu, Y.; Boone, D. R.; Sleat, R.; Mah, R. A. Methanosarcina mazei Lyc, a new methanogenic isolate which produces a disaggregating enzyme Appl. Environ. Microbiol. 1985, 49, 608
-
(1985)
Appl. Environ. Microbiol.
, vol.49
, pp. 608
-
-
Liu, Y.1
Boone, D.R.2
Sleat, R.3
Mah, R.A.4
-
264
-
-
0343593731
-
Phylogenetic analysis of 18 thermophilic Methanobacterium isolates supports the proposals to create a new genus, Methanothermobacter gen. Nov., And to reclassify several isolates in three species, Methanothermobacter thermautotrophicus comb. Nov., Methanothermobacter wolfeii comb. Nov., And Methanothermobacter marburgensis sp. Nov
-
Wasserfallen, A.; Nolling, J.; Pfister, P.; Reeve, J.; Conway de Macario, E. Phylogenetic analysis of 18 thermophilic Methanobacterium isolates supports the proposals to create a new genus, Methanothermobacter gen. nov., and to reclassify several isolates in three species, Methanothermobacter thermautotrophicus comb. nov., Methanothermobacter wolfeii comb. nov., and Methanothermobacter marburgensis sp. nov Int. J. Syst. Evol. Microbiol. 2000, 50, 43
-
(2000)
Int. J. Syst. Evol. Microbiol.
, vol.50
, pp. 43
-
-
Wasserfallen, A.1
Nolling, J.2
Pfister, P.3
Reeve, J.4
Conway De MacArio, E.5
-
265
-
-
0021746977
-
Structural elucidation of a unique macrocyclic membrane lipid from a new, extremely thermophilic, deep-sea hydrothermal vent Archaebacterium, Methanococcus jannaschii
-
Comita, P. B.; Gagosian, R. B.; Pang, H.; Costello, C. E. Structural elucidation of a unique macrocyclic membrane lipid from a new, extremely thermophilic, deep-sea hydrothermal vent Archaebacterium, Methanococcus jannaschii J. Biol. Chem. 1984, 259, 5234
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 5234
-
-
Comita, P.B.1
Gagosian, R.B.2
Pang, H.3
Costello, C.E.4
-
266
-
-
0027552050
-
Life in hot springs and hydrothermal vents
-
Segerer, A. H.; Burggraf, S.; Fiala, G.; Huber, G.; Huber, R.; Pley, U.; Stetter, K. O. Life in hot springs and hydrothermal vents Origins Life Evol. Biospheres 1993, 23, 77
-
(1993)
Origins Life Evol. Biospheres
, vol.23
, pp. 77
-
-
Segerer, A.H.1
Burggraf, S.2
Fiala, G.3
Huber, G.4
Huber, R.5
Pley, U.6
Stetter, K.O.7
|