-
1
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000, 408:796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
2
-
-
14844302397
-
Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
-
Onodera Y., Haag J.R., Ream T., Costa Nunes P., Pontes O., Pikaard C.S. Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 2005, 120:613-622.
-
(2005)
Cell
, vol.120
, pp. 613-622
-
-
Onodera, Y.1
Haag, J.R.2
Ream, T.3
Costa Nunes, P.4
Pontes, O.5
Pikaard, C.S.6
-
3
-
-
14844295120
-
RNA polymerase IV directs silencing of endogenous DNA
-
Herr A.J., Jensen M.B., Dalmay T., Baulcombe D.C. RNA polymerase IV directs silencing of endogenous DNA. Science 2005, 308:118-120.
-
(2005)
Science
, vol.308
, pp. 118-120
-
-
Herr, A.J.1
Jensen, M.B.2
Dalmay, T.3
Baulcombe, D.C.4
-
4
-
-
0022132080
-
Extensive homology among the largest subunits of eukaryotic and prokaryotic RNA polymerases
-
Allison L.A., Moyle M., Shales M., Ingles C.J. Extensive homology among the largest subunits of eukaryotic and prokaryotic RNA polymerases. Cell 1985, 42:599-610.
-
(1985)
Cell
, vol.42
, pp. 599-610
-
-
Allison, L.A.1
Moyle, M.2
Shales, M.3
Ingles, C.J.4
-
5
-
-
0035827332
-
Structural basis of transcription: an RNA polymerase II elongation complex at 3.3Å resolution
-
Gnatt A.L., Cramer P., Fu J., Bushnell D.A., Kornberg R.D. Structural basis of transcription: an RNA polymerase II elongation complex at 3.3Å resolution. Science 2001, 292:1876-1882.
-
(2001)
Science
, vol.292
, pp. 1876-1882
-
-
Gnatt, A.L.1
Cramer, P.2
Fu, J.3
Bushnell, D.A.4
Kornberg, R.D.5
-
6
-
-
0035827346
-
Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution
-
Cramer P., Bushnell D.A., Kornberg R.D. Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science 2001, 292:1863-1876.
-
(2001)
Science
, vol.292
, pp. 1863-1876
-
-
Cramer, P.1
Bushnell, D.A.2
Kornberg, R.D.3
-
7
-
-
84862666457
-
A movie of RNA polymerase II transcription
-
Cheung A.C., Cramer P. A movie of RNA polymerase II transcription. Cell 2012, 149:1431-1437.
-
(2012)
Cell
, vol.149
, pp. 1431-1437
-
-
Cheung, A.C.1
Cramer, P.2
-
8
-
-
67249164174
-
Schizosacharomyces pombe RNA polymerase II at 3.6-A resolution
-
Spahr H., Calero G., Bushnell D.A., Kornberg R.D. Schizosacharomyces pombe RNA polymerase II at 3.6-A resolution. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:9185-9190.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 9185-9190
-
-
Spahr, H.1
Calero, G.2
Bushnell, D.A.3
Kornberg, R.D.4
-
9
-
-
39149142997
-
The X-ray crystal structure of RNA polymerase from archaea
-
Hirata A., Klein B.J., Murakami K.S. The X-ray crystal structure of RNA polymerase from archaea. Nature 2008, 451:851-854.
-
(2008)
Nature
, vol.451
, pp. 851-854
-
-
Hirata, A.1
Klein, B.J.2
Murakami, K.S.3
-
10
-
-
0033578701
-
Crystal structure of Thermus aquaticus core RNA polymerase at 3.3Å resolution
-
Zhang G., Campbell E.A., Minakhin L., Richter C., Severinov K., Darst S.A. Crystal structure of Thermus aquaticus core RNA polymerase at 3.3Å resolution. Cell 1999, 98:811-824.
-
(1999)
Cell
, vol.98
, pp. 811-824
-
-
Zhang, G.1
Campbell, E.A.2
Minakhin, L.3
Richter, C.4
Severinov, K.5
Darst, S.A.6
-
11
-
-
0037123659
-
Structural basis of transcription initiation: RNA polymerase holoenzyme at 4Å resolution
-
Murakami K.S., Masuda S., Darst S.A. Structural basis of transcription initiation: RNA polymerase holoenzyme at 4Å resolution. Science 2002, 296:1280-1284.
-
(2002)
Science
, vol.296
, pp. 1280-1284
-
-
Murakami, K.S.1
Masuda, S.2
Darst, S.A.3
-
12
-
-
0037123602
-
Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex
-
Murakami K.S., Masuda S., Campbell E.A., Muzzin O., Darst S.A. Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex. Science 2002, 296:1285-1290.
-
(2002)
Science
, vol.296
, pp. 1285-1290
-
-
Murakami, K.S.1
Masuda, S.2
Campbell, E.A.3
Muzzin, O.4
Darst, S.A.5
-
13
-
-
34447513771
-
Structural basis for substrate loading in bacterial RNA polymerase
-
Vassylyev D.G., Vassylyeva M.N., Zhang J., Palangat M., Artsimovitch I., Landick R. Structural basis for substrate loading in bacterial RNA polymerase. Nature 2007, 448:163-168.
-
(2007)
Nature
, vol.448
, pp. 163-168
-
-
Vassylyev, D.G.1
Vassylyeva, M.N.2
Zhang, J.3
Palangat, M.4
Artsimovitch, I.5
Landick, R.6
-
14
-
-
34447499995
-
Structural basis for transcription elongation by bacterial RNA polymerase
-
Vassylyev D.G., Vassylyeva M.N., Perederina A., Tahirov T.H., Artsimovitch I. Structural basis for transcription elongation by bacterial RNA polymerase. Nature 2007, 448:157-162.
-
(2007)
Nature
, vol.448
, pp. 157-162
-
-
Vassylyev, D.G.1
Vassylyeva, M.N.2
Perederina, A.3
Tahirov, T.H.4
Artsimovitch, I.5
-
15
-
-
0037071844
-
Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6Å resolution
-
Vassylyev D.G., Sekine S., Laptenko O., Lee J., Vassylyeva M.N., Borukhov S., Yokoyama S. Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6Å resolution. Nature 2002, 417:712-719.
-
(2002)
Nature
, vol.417
, pp. 712-719
-
-
Vassylyev, D.G.1
Sekine, S.2
Laptenko, O.3
Lee, J.4
Vassylyeva, M.N.5
Borukhov, S.6
Yokoyama, S.7
-
16
-
-
84856273602
-
A universal RNA polymerase II CTD cycle is orchestrated by complex interplays between kinase, phosphatase, and isomerase enzymes along genes
-
Bataille A.R., Jeronimo C., Jacques P.E., Laramee L., Fortin M.E., Forest A., Bergeron M., Hanes S.D., Robert F. A universal RNA polymerase II CTD cycle is orchestrated by complex interplays between kinase, phosphatase, and isomerase enzymes along genes. Mol. Cell 2012, 45:158-170.
-
(2012)
Mol. Cell
, vol.45
, pp. 158-170
-
-
Bataille, A.R.1
Jeronimo, C.2
Jacques, P.E.3
Laramee, L.4
Fortin, M.E.5
Forest, A.6
Bergeron, M.7
Hanes, S.D.8
Robert, F.9
-
17
-
-
77957786100
-
Gene-specific RNA polymerase II phosphorylation and the CTD code
-
Kim H., Erickson B., Luo W., Seward D., Graber J.H., Pollock D.D., Megee P.C., Bentley D.L. Gene-specific RNA polymerase II phosphorylation and the CTD code. Nat. Struct. Mol. Biol. 2010, 17:1279-1286.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1279-1286
-
-
Kim, H.1
Erickson, B.2
Luo, W.3
Seward, D.4
Graber, J.H.5
Pollock, D.D.6
Megee, P.C.7
Bentley, D.L.8
-
18
-
-
84862493306
-
Updating the RNA polymerase CTD code: adding gene-specific layers
-
Egloff S., Dienstbier M., Murphy S. Updating the RNA polymerase CTD code: adding gene-specific layers. Trends Genet. 2012, 28:333-341.
-
(2012)
Trends Genet.
, vol.28
, pp. 333-341
-
-
Egloff, S.1
Dienstbier, M.2
Murphy, S.3
-
19
-
-
84865197343
-
Gene-specific requirement of RNA polymerase II CTD phosphorylation
-
Drogat J., Hermand D. Gene-specific requirement of RNA polymerase II CTD phosphorylation. Mol. Microbiol. 2012, 84:995-1004.
-
(2012)
Mol. Microbiol.
, vol.84
, pp. 995-1004
-
-
Drogat, J.1
Hermand, D.2
-
20
-
-
70449641057
-
Progression through the RNA polymerase II CTD cycle
-
Buratowski S. Progression through the RNA polymerase II CTD cycle. Mol. Cell 2009, 36:541-546.
-
(2009)
Mol. Cell
, vol.36
, pp. 541-546
-
-
Buratowski, S.1
-
21
-
-
0028606031
-
A unified polymerase mechanism for nonhomologous DNA and RNA polymerases
-
Steitz T.A., Smerdon S.J., Jager J., Joyce C.M. A unified polymerase mechanism for nonhomologous DNA and RNA polymerases. Science 1994, 266:2022-2025.
-
(1994)
Science
, vol.266
, pp. 2022-2025
-
-
Steitz, T.A.1
Smerdon, S.J.2
Jager, J.3
Joyce, C.M.4
-
23
-
-
33751235874
-
Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis
-
Wang D., Bushnell D.A., Westover K.D., Kaplan C.D., Kornberg R.D. Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis. Cell 2006, 127:941-954.
-
(2006)
Cell
, vol.127
, pp. 941-954
-
-
Wang, D.1
Bushnell, D.A.2
Westover, K.D.3
Kaplan, C.D.4
Kornberg, R.D.5
-
24
-
-
8344234112
-
Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center
-
Westover K.D., Bushnell D.A., Kornberg R.D. Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center. Cell 2004, 119:481-489.
-
(2004)
Cell
, vol.119
, pp. 481-489
-
-
Westover, K.D.1
Bushnell, D.A.2
Kornberg, R.D.3
-
25
-
-
10944232674
-
Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS
-
Kettenberger H., Armache K.J., Cramer P. Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS. Mol. Cell 2004, 16:955-965.
-
(2004)
Mol. Cell
, vol.16
, pp. 955-965
-
-
Kettenberger, H.1
Armache, K.J.2
Cramer, P.3
-
26
-
-
79955027964
-
Templated nucleoside triphosphate binding to a noncatalytic site on RNA polymerase regulates transcription
-
Kennedy S.R., Erie D.A. Templated nucleoside triphosphate binding to a noncatalytic site on RNA polymerase regulates transcription. Proc. Natl. Acad. Sci. U. S. A. 2011, 108:6079-6084.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 6079-6084
-
-
Kennedy, S.R.1
Erie, D.A.2
-
27
-
-
0035958552
-
Allosteric binding of nucleoside triphosphates to RNA polymerase regulates transcription elongation
-
Foster J.E., Holmes S.F., Erie D.A. Allosteric binding of nucleoside triphosphates to RNA polymerase regulates transcription elongation. Cell 2001, 106:243-252.
-
(2001)
Cell
, vol.106
, pp. 243-252
-
-
Foster, J.E.1
Holmes, S.F.2
Erie, D.A.3
-
28
-
-
18944368782
-
Dynamic error correction and regulation of downstream bubble opening by human RNA polymerase II
-
Gong X.Q., Zhang C., Feig M., Burton Z.F. Dynamic error correction and regulation of downstream bubble opening by human RNA polymerase II. Mol. Cell 2005, 18:461-470.
-
(2005)
Mol. Cell
, vol.18
, pp. 461-470
-
-
Gong, X.Q.1
Zhang, C.2
Feig, M.3
Burton, Z.F.4
-
29
-
-
28544432440
-
Direct observation of base-pair stepping by RNA polymerase
-
Abbondanzieri E.A., Greenleaf W.J., Shaevitz J.W., Landick R., Block S.M. Direct observation of base-pair stepping by RNA polymerase. Nature 2005, 438:460-465.
-
(2005)
Nature
, vol.438
, pp. 460-465
-
-
Abbondanzieri, E.A.1
Greenleaf, W.J.2
Shaevitz, J.W.3
Landick, R.4
Block, S.M.5
-
30
-
-
12944324227
-
A ratchet mechanism of transcription elongation and its control
-
Bar-Nahum G., Epshtein V., Ruckenstein A.E., Rafikov R., Mustaev A., Nudler E. A ratchet mechanism of transcription elongation and its control. Cell 2005, 120:183-193.
-
(2005)
Cell
, vol.120
, pp. 183-193
-
-
Bar-Nahum, G.1
Epshtein, V.2
Ruckenstein, A.E.3
Rafikov, R.4
Mustaev, A.5
Nudler, E.6
-
31
-
-
4644265121
-
Discrimination against deoxyribonucleotide substrates by bacterial RNA polymerase
-
Svetlov V., Vassylyev D.G., Artsimovitch I. Discrimination against deoxyribonucleotide substrates by bacterial RNA polymerase. J. Biol. Chem. 2004, 279:38087-38090.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 38087-38090
-
-
Svetlov, V.1
Vassylyev, D.G.2
Artsimovitch, I.3
-
32
-
-
77951973031
-
Stepwise mechanism for transcription fidelity
-
Yuzenkova Y., Bochkareva A., Tadigotla V.R., Roghanian M., Zorov S., Severinov K., Zenkin N. Stepwise mechanism for transcription fidelity. BMC Biol. 2010, 8:54.
-
(2010)
BMC Biol.
, vol.8
, pp. 54
-
-
Yuzenkova, Y.1
Bochkareva, A.2
Tadigotla, V.R.3
Roghanian, M.4
Zorov, S.5
Severinov, K.6
Zenkin, N.7
-
33
-
-
84867297989
-
Active site opening and closure control translocation of multisubunit RNA polymerase
-
Malinen A.M., Turtola M., Parthiban M., Vainonen L., Johnson M.S., Belogurov G.A. Active site opening and closure control translocation of multisubunit RNA polymerase. Nucleic Acids Res. 2012, 40:7442-7451.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 7442-7451
-
-
Malinen, A.M.1
Turtola, M.2
Parthiban, M.3
Vainonen, L.4
Johnson, M.S.5
Belogurov, G.A.6
-
34
-
-
84862104596
-
Dissecting chemical interactions governing RNA polymerase II transcriptional fidelity
-
Kellinger M.W., Ulrich S., Chong J., Kool E.T., Wang D. Dissecting chemical interactions governing RNA polymerase II transcriptional fidelity. J. Am. Chem. Soc. 2012, 134:8231-8240.
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 8231-8240
-
-
Kellinger, M.W.1
Ulrich, S.2
Chong, J.3
Kool, E.T.4
Wang, D.5
-
35
-
-
44449103640
-
The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin
-
Kaplan C.D., Larsson K.M., Kornberg R.D. The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin. Mol. Cell 2008, 30:547-556.
-
(2008)
Mol. Cell
, vol.30
, pp. 547-556
-
-
Kaplan, C.D.1
Larsson, K.M.2
Kornberg, R.D.3
-
36
-
-
84860111277
-
Dissection of Pol II trigger loop function and Pol II activity-dependent control of start site selection in vivo
-
Kaplan C.D., Jin H., Zhang I.L., Belyanin A. Dissection of Pol II trigger loop function and Pol II activity-dependent control of start site selection in vivo. PLoS Genet. 2012, 8:e1002627.
-
(2012)
PLoS Genet.
, vol.8
-
-
Kaplan, C.D.1
Jin, H.2
Zhang, I.L.3
Belyanin, A.4
-
37
-
-
44449094019
-
Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation
-
Kireeva M.L., Nedialkov Y.A., Cremona G.H., Purtov Y.A., Lubkowska L., Malagon F., Burton Z.F., Strathern J.N., Kashlev M. Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation. Mol. Cell 2008, 30:557-566.
-
(2008)
Mol. Cell
, vol.30
, pp. 557-566
-
-
Kireeva, M.L.1
Nedialkov, Y.A.2
Cremona, G.H.3
Purtov, Y.A.4
Lubkowska, L.5
Malagon, F.6
Burton, Z.F.7
Strathern, J.N.8
Kashlev, M.9
-
38
-
-
34547204502
-
A central role of the RNA polymerase trigger loop in active-site rearrangement during transcriptional pausing
-
Toulokhonov I., Zhang J., Palangat M., Landick R. A central role of the RNA polymerase trigger loop in active-site rearrangement during transcriptional pausing. Mol. Cell 2007, 27:406-419.
-
(2007)
Mol. Cell
, vol.27
, pp. 406-419
-
-
Toulokhonov, I.1
Zhang, J.2
Palangat, M.3
Landick, R.4
-
39
-
-
77449093660
-
Role of the RNA polymerase trigger loop in catalysis and pausing
-
Zhang J., Palangat M., Landick R. Role of the RNA polymerase trigger loop in catalysis and pausing. Nat. Struct. Mol. Biol. 2010, 17:99-104.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 99-104
-
-
Zhang, J.1
Palangat, M.2
Landick, R.3
-
40
-
-
24044497229
-
Structural basis of transcription inhibition by antibiotic streptolydigin
-
Temiakov D., Zenkin N., Vassylyeva M.N., Perederina A., Tahirov T.H., Kashkina E., Savkina M., Zorov S., Nikiforov V., Igarashi N., Matsugaki N., Wakatsuki S., Severinov K., Vassylyev D.G. Structural basis of transcription inhibition by antibiotic streptolydigin. Mol. Cell 2005, 19:655-666.
-
(2005)
Mol. Cell
, vol.19
, pp. 655-666
-
-
Temiakov, D.1
Zenkin, N.2
Vassylyeva, M.N.3
Perederina, A.4
Tahirov, T.H.5
Kashkina, E.6
Savkina, M.7
Zorov, S.8
Nikiforov, V.9
Igarashi, N.10
Matsugaki, N.11
Wakatsuki, S.12
Severinov, K.13
Vassylyev, D.G.14
-
41
-
-
77954085619
-
The architecture of RNA polymerase fidelity
-
Kaplan C.D. The architecture of RNA polymerase fidelity. BMC Biol. 2010, 8:85.
-
(2010)
BMC Biol.
, vol.8
, pp. 85
-
-
Kaplan, C.D.1
-
42
-
-
57249108333
-
Bridge helix and trigger loop perturbations generate superactive RNA polymerases
-
Tan L., Wiesler S., Trzaska D., Carney H.C., Weinzierl R.O. Bridge helix and trigger loop perturbations generate superactive RNA polymerases. J. Biol. 2008, 7:40.
-
(2008)
J. Biol.
, vol.7
, pp. 40
-
-
Tan, L.1
Wiesler, S.2
Trzaska, D.3
Carney, H.C.4
Weinzierl, R.O.5
-
43
-
-
82455199223
-
Structural basis of initial RNA polymerase II transcription
-
Cheung A.C., Sainsbury S., Cramer P. Structural basis of initial RNA polymerase II transcription. EMBO J. 2011, 30:4755-4763.
-
(2011)
EMBO J.
, vol.30
, pp. 4755-4763
-
-
Cheung, A.C.1
Sainsbury, S.2
Cramer, P.3
-
44
-
-
77957678214
-
RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription
-
Huang X., Wang D., Weiss D.R., Bushnell D.A., Kornberg R.D., Levitt M. RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:15745-15750.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 15745-15750
-
-
Huang, X.1
Wang, D.2
Weiss, D.R.3
Bushnell, D.A.4
Kornberg, R.D.5
Levitt, M.6
-
45
-
-
77955653271
-
Conformational coupling, bridge helix dynamics and active site dehydration in catalysis by RNA polymerase
-
Seibold S.A., Singh B.N., Zhang C., Kireeva M., Domecq C., Bouchard A., Nazione A.M., Feig M., Cukier R.I., Coulombe B., Kashlev M., Hampsey M., Burton Z.F. Conformational coupling, bridge helix dynamics and active site dehydration in catalysis by RNA polymerase. Biochim. Biophys. Acta 2010, 1799:575-587.
-
(2010)
Biochim. Biophys. Acta
, vol.1799
, pp. 575-587
-
-
Seibold, S.A.1
Singh, B.N.2
Zhang, C.3
Kireeva, M.4
Domecq, C.5
Bouchard, A.6
Nazione, A.M.7
Feig, M.8
Cukier, R.I.9
Coulombe, B.10
Kashlev, M.11
Hampsey, M.12
Burton, Z.F.13
-
46
-
-
84863069608
-
Dynamics of pyrophosphate ion release and its coupled trigger loop motion from closed to open state in RNA polymerase II
-
Da L.T., Wang D., Huang X. Dynamics of pyrophosphate ion release and its coupled trigger loop motion from closed to open state in RNA polymerase II. J. Am. Chem. Soc. 2012, 134:2399-2406.
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 2399-2406
-
-
Da, L.T.1
Wang, D.2
Huang, X.3
-
47
-
-
79961184265
-
Controlled interplay between trigger loop and Gre factor in the RNA polymerase active centre
-
Roghanian M., Yuzenkova Y., Zenkin N. Controlled interplay between trigger loop and Gre factor in the RNA polymerase active centre. Nucleic Acids Res. 2011, 39:4352-4359.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 4352-4359
-
-
Roghanian, M.1
Yuzenkova, Y.2
Zenkin, N.3
-
48
-
-
84860380221
-
Transcription initiation factor DksA has diverse effects on RNA chain elongation
-
Furman R., Sevostyanova A., Artsimovitch I. Transcription initiation factor DksA has diverse effects on RNA chain elongation. Nucleic Acids Res. 2012, 40:3392-3402.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 3392-3402
-
-
Furman, R.1
Sevostyanova, A.2
Artsimovitch, I.3
-
49
-
-
79952440464
-
Structural basis of RNA polymerase II backtracking, arrest and reactivation
-
Cheung A.C., Cramer P. Structural basis of RNA polymerase II backtracking, arrest and reactivation. Nature 2011, 471:249-253.
-
(2011)
Nature
, vol.471
, pp. 249-253
-
-
Cheung, A.C.1
Cramer, P.2
-
50
-
-
66349138227
-
Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution
-
Wang D., Bushnell D.A., Huang X., Westover K.D., Levitt M., Kornberg R.D. Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution. Science 2009, 324:1203-1206.
-
(2009)
Science
, vol.324
, pp. 1203-1206
-
-
Wang, D.1
Bushnell, D.A.2
Huang, X.3
Westover, K.D.4
Levitt, M.5
Kornberg, R.D.6
-
51
-
-
67449116330
-
Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA
-
Sydow J.F., Brueckner F., Cheung A.C., Damsma G.E., Dengl S., Lehmann E., Vassylyev D., Cramer P. Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA. Mol. Cell 2009, 34:710-721.
-
(2009)
Mol. Cell
, vol.34
, pp. 710-721
-
-
Sydow, J.F.1
Brueckner, F.2
Cheung, A.C.3
Damsma, G.E.4
Dengl, S.5
Lehmann, E.6
Vassylyev, D.7
Cramer, P.8
-
52
-
-
0027761137
-
Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription
-
Erie D.A., Hajiseyedjavadi O., Young M.C., von Hippel P.H. Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription. Science 1993, 262:867-873.
-
(1993)
Science
, vol.262
, pp. 867-873
-
-
Erie, D.A.1
Hajiseyedjavadi, O.2
Young, M.C.3
von Hippel, P.H.4
-
53
-
-
84860211901
-
Trigger loop dynamics mediate the balance between the transcriptional fidelity and speed of RNA polymerase II
-
Larson M.H., Zhou J., Kaplan C.D., Palangat M., Kornberg R.D., Landick R., Block S.M. Trigger loop dynamics mediate the balance between the transcriptional fidelity and speed of RNA polymerase II. Proc. Natl. Acad. Sci. U. S. A. 2012, 109:6555-6560.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 6555-6560
-
-
Larson, M.H.1
Zhou, J.2
Kaplan, C.D.3
Palangat, M.4
Kornberg, R.D.5
Landick, R.6
Block, S.M.7
-
54
-
-
0037591460
-
Intrinsic transcript cleavage in yeast RNA polymerase II elongation complexes
-
Weilbaecher R.G., Awrey D.E., Edwards A.M., Kane C.M. Intrinsic transcript cleavage in yeast RNA polymerase II elongation complexes. J. Biol. Chem. 2003, 278:24189-24199.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 24189-24199
-
-
Weilbaecher, R.G.1
Awrey, D.E.2
Edwards, A.M.3
Kane, C.M.4
-
55
-
-
0026648570
-
The RNA polymerase II ternary complex cleaves the nascent transcript in a 3'-5' direction in the presence of elongation factor SII
-
Izban M.G., Luse D.S. The RNA polymerase II ternary complex cleaves the nascent transcript in a 3'-5' direction in the presence of elongation factor SII. Genes Dev. 1992, 6:1342-1356.
-
(1992)
Genes Dev.
, vol.6
, pp. 1342-1356
-
-
Izban, M.G.1
Luse, D.S.2
-
56
-
-
0026697999
-
Elongation factor-dependent transcript shortening by template-engaged RNA polymerase II
-
Reines D. Elongation factor-dependent transcript shortening by template-engaged RNA polymerase II. J. Biol. Chem. 1992, 267:3795-3800.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 3795-3800
-
-
Reines, D.1
-
57
-
-
67749137639
-
Rpb9 subunit controls transcription fidelity by delaying NTP sequestration in RNA polymerase II
-
Walmacq C., Kireeva M.L., Irvin J., Nedialkov Y., Lubkowska L., Malagon F., Strathern J.N., Kashlev M. Rpb9 subunit controls transcription fidelity by delaying NTP sequestration in RNA polymerase II. J. Biol. Chem. 2009, 284:19601-19612.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 19601-19612
-
-
Walmacq, C.1
Kireeva, M.L.2
Irvin, J.3
Nedialkov, Y.4
Lubkowska, L.5
Malagon, F.6
Strathern, J.N.7
Kashlev, M.8
-
58
-
-
84859710196
-
Mechanism of translesion transcription by RNA polymerase II and its role in cellular resistance to DNA damage
-
Walmacq C., Cheung A.C., Kireeva M.L., Lubkowska L., Ye C., Gotte D., Strathern J.N., Carell T., Cramer P., Kashlev M. Mechanism of translesion transcription by RNA polymerase II and its role in cellular resistance to DNA damage. Mol. Cell 2012, 46:18-29.
-
(2012)
Mol. Cell
, vol.46
, pp. 18-29
-
-
Walmacq, C.1
Cheung, A.C.2
Kireeva, M.L.3
Lubkowska, L.4
Ye, C.5
Gotte, D.6
Strathern, J.N.7
Carell, T.8
Cramer, P.9
Kashlev, M.10
-
59
-
-
84870983295
-
Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase
-
Kireeva M.L., Opron K., Seibold S.A., Domecq C., Cukier R.I., Coulombe B., Kashlev M., Burton Z.F. Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase. BMC Biophys. 2012, 5:11.
-
(2012)
BMC Biophys.
, vol.5
, pp. 11
-
-
Kireeva, M.L.1
Opron, K.2
Seibold, S.A.3
Domecq, C.4
Cukier, R.I.5
Coulombe, B.6
Kashlev, M.7
Burton, Z.F.8
-
60
-
-
0030987775
-
Transcription elongation through DNA arrest sites. A multistep process involving both RNA polymerase II subunit RPB9 and TFIIS
-
Awrey D.E., Weilbaecher R.G., Hemming S.A., Orlicky S.M., Kane C.M., Edwards A.M. Transcription elongation through DNA arrest sites. A multistep process involving both RNA polymerase II subunit RPB9 and TFIIS. J. Biol. Chem. 1997, 272:14747-14754.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 14747-14754
-
-
Awrey, D.E.1
Weilbaecher, R.G.2
Hemming, S.A.3
Orlicky, S.M.4
Kane, C.M.5
Edwards, A.M.6
-
61
-
-
75649134615
-
Novel RNA polymerase II mutation suppresses transcriptional fidelity and oxidative stress sensitivity in rpb9delta yeast
-
Koyama H., Ueda T., Ito T., Sekimizu K. Novel RNA polymerase II mutation suppresses transcriptional fidelity and oxidative stress sensitivity in rpb9delta yeast. Genes Cells 2010, 15:151-159.
-
(2010)
Genes Cells
, vol.15
, pp. 151-159
-
-
Koyama, H.1
Ueda, T.2
Ito, T.3
Sekimizu, K.4
-
62
-
-
70350784141
-
Site-directed mutagenesis, purification and assay of Saccharomyces cerevisiae RNA polymerase II
-
Domecq C., Kireeva M., Archambault J., Kashlev M., Coulombe B., Burton Z.F. Site-directed mutagenesis, purification and assay of Saccharomyces cerevisiae RNA polymerase II. Protein Expr. Purif. 2010, 69:83-90.
-
(2010)
Protein Expr. Purif.
, vol.69
, pp. 83-90
-
-
Domecq, C.1
Kireeva, M.2
Archambault, J.3
Kashlev, M.4
Coulombe, B.5
Burton, Z.F.6
-
63
-
-
80052255345
-
Interaction of RNA polymerase II fork loop 2 with downstream non-template DNA regulates transcription elongation
-
Kireeva M.L., Domecq C., Coulombe B., Burton Z.F., Kashlev M. Interaction of RNA polymerase II fork loop 2 with downstream non-template DNA regulates transcription elongation. J. Biol. Chem. 2011, 286:30898-30910.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 30898-30910
-
-
Kireeva, M.L.1
Domecq, C.2
Coulombe, B.3
Burton, Z.F.4
Kashlev, M.5
-
64
-
-
73149106601
-
Allosteric control of catalysis by the F loop of RNA polymerase
-
Miropolskaya N., Artsimovitch I., Klimasauskas S., Nikiforov V., Kulbachinskiy A. Allosteric control of catalysis by the F loop of RNA polymerase. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:18942-18947.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 18942-18947
-
-
Miropolskaya, N.1
Artsimovitch, I.2
Klimasauskas, S.3
Nikiforov, V.4
Kulbachinskiy, A.5
-
65
-
-
77958579653
-
The nucleotide addition cycle of RNA polymerase is controlled by two molecular hinges in the Bridge Helix domain
-
Weinzierl R.O. The nucleotide addition cycle of RNA polymerase is controlled by two molecular hinges in the Bridge Helix domain. BMC Biol. 2010, 8:134.
-
(2010)
BMC Biol.
, vol.8
, pp. 134
-
-
Weinzierl, R.O.1
-
66
-
-
0037705379
-
NTP-driven translocation by human RNA polymerase II
-
Nedialkov Y.A., Gong X.Q., Hovde S.L., Yamaguchi Y., Handa H., Geiger J.H., Yan H., Burton Z.F. NTP-driven translocation by human RNA polymerase II. J. Biol. Chem. 2003, 278:18303-18312.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 18303-18312
-
-
Nedialkov, Y.A.1
Gong, X.Q.2
Hovde, S.L.3
Yamaguchi, Y.4
Handa, H.5
Geiger, J.H.6
Yan, H.7
Burton, Z.F.8
-
67
-
-
78049347876
-
RNA polymerase II with open and closed trigger loops: active site dynamics and nucleic acid translocation
-
Feig M., Burton Z.F. RNA polymerase II with open and closed trigger loops: active site dynamics and nucleic acid translocation. Biophys. J. 2010, 99:2577-2586.
-
(2010)
Biophys. J.
, vol.99
, pp. 2577-2586
-
-
Feig, M.1
Burton, Z.F.2
-
68
-
-
77449145343
-
RNA polymerase II flexibility during translocation from normal mode analysis
-
Feig M., Burton Z.F. RNA polymerase II flexibility during translocation from normal mode analysis. Proteins 2010, 78:434-446.
-
(2010)
Proteins
, vol.78
, pp. 434-446
-
-
Feig, M.1
Burton, Z.F.2
-
69
-
-
33646188087
-
Mutations in the Saccharomyces cerevisiae RPB1 gene conferring hypersensitivity to 6-azauracil
-
Malagon F., Kireeva M.L., Shafer B.K., Lubkowska L., Kashlev M., Strathern J.N. Mutations in the Saccharomyces cerevisiae RPB1 gene conferring hypersensitivity to 6-azauracil. Genetics 2006, 172:2201-2209.
-
(2006)
Genetics
, vol.172
, pp. 2201-2209
-
-
Malagon, F.1
Kireeva, M.L.2
Shafer, B.K.3
Lubkowska, L.4
Kashlev, M.5
Strathern, J.N.6
-
70
-
-
0033597435
-
Mechanism of intrinsic transcription termination and antitermination
-
Yarnell W.S., Roberts J.W. Mechanism of intrinsic transcription termination and antitermination. Science 1999, 284:611-615.
-
(1999)
Science
, vol.284
, pp. 611-615
-
-
Yarnell, W.S.1
Roberts, J.W.2
-
71
-
-
40749096382
-
Applied force reveals mechanistic and energetic details of transcription termination
-
Larson M.H., Greenleaf W.J., Landick R., Block S.M. Applied force reveals mechanistic and energetic details of transcription termination. Cell 2008, 132:971-982.
-
(2008)
Cell
, vol.132
, pp. 971-982
-
-
Larson, M.H.1
Greenleaf, W.J.2
Landick, R.3
Block, S.M.4
-
72
-
-
77953280325
-
Nanomechanical constraints acting on the catalytic site of cellular RNA polymerases
-
Weinzierl R.O. Nanomechanical constraints acting on the catalytic site of cellular RNA polymerases. Biochem. Soc. Trans. 2010, 38:428-432.
-
(2010)
Biochem. Soc. Trans.
, vol.38
, pp. 428-432
-
-
Weinzierl, R.O.1
-
73
-
-
80051538984
-
RNA transcript 3'-proximal sequence affects translocation bias of RNA polymerase
-
Hein P.P., Palangat M., Landick R. RNA transcript 3'-proximal sequence affects translocation bias of RNA polymerase. Biochemistry 2011, 50:7002-7014.
-
(2011)
Biochemistry
, vol.50
, pp. 7002-7014
-
-
Hein, P.P.1
Palangat, M.2
Landick, R.3
-
74
-
-
84856437051
-
Factor-independent transcription pausing caused by recognition of the RNA-DNA hybrid sequence
-
Bochkareva A., Yuzenkova Y., Tadigotla V.R., Zenkin N. Factor-independent transcription pausing caused by recognition of the RNA-DNA hybrid sequence. EMBO J. 2012, 31:630-639.
-
(2012)
EMBO J.
, vol.31
, pp. 630-639
-
-
Bochkareva, A.1
Yuzenkova, Y.2
Tadigotla, V.R.3
Zenkin, N.4
-
75
-
-
20144384163
-
Mapping of transcription start sites in Saccharomyces cerevisiae using 5' SAGE
-
Zhang Z., Dietrich F.S. Mapping of transcription start sites in Saccharomyces cerevisiae using 5' SAGE. Nucleic Acids Res. 2005, 33:2838-2851.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2838-2851
-
-
Zhang, Z.1
Dietrich, F.S.2
-
76
-
-
79952758726
-
X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides
-
Gleghorn M.L., Davydova E.K., Basu R., Rothman-Denes L.B., Murakami K.S. X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides. Proc. Natl. Acad. Sci. U. S. A. 2011, 108:3566-3571.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 3566-3571
-
-
Gleghorn, M.L.1
Davydova, E.K.2
Basu, R.3
Rothman-Denes, L.B.4
Murakami, K.S.5
-
77
-
-
33847390753
-
Anatomy of Escherichia coli sigma70 promoters
-
Shultzaberger R.K., Chen Z., Lewis K.A., Schneider T.D. Anatomy of Escherichia coli sigma70 promoters. Nucleic Acids Res. 2007, 35:771-788.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 771-788
-
-
Shultzaberger, R.K.1
Chen, Z.2
Lewis, K.A.3
Schneider, T.D.4
-
78
-
-
0025883715
-
Spontaneous cleavage of RNA in ternary complexes of Escherichia coli RNA polymerase and its significance for the mechanism of transcription
-
Surratt C.K., Milan S.C., Chamberlin M.J. Spontaneous cleavage of RNA in ternary complexes of Escherichia coli RNA polymerase and its significance for the mechanism of transcription. Proc. Natl. Acad. Sci. U. S. A. 1991, 88:7983-7987.
-
(1991)
Proc. Natl. Acad. Sci. U. S. A.
, vol.88
, pp. 7983-7987
-
-
Surratt, C.K.1
Milan, S.C.2
Chamberlin, M.J.3
-
79
-
-
0031008221
-
Basic mechanisms of transcript elongation and its regulation
-
Uptain S.M., Kane C.M., Chamberlin M.J. Basic mechanisms of transcript elongation and its regulation. Annu. Rev. Biochem. 1997, 66:117-172.
-
(1997)
Annu. Rev. Biochem.
, vol.66
, pp. 117-172
-
-
Uptain, S.M.1
Kane, C.M.2
Chamberlin, M.J.3
-
80
-
-
33746634704
-
Transcript-assisted transcriptional proofreading
-
Zenkin N., Yuzenkova Y., Severinov K. Transcript-assisted transcriptional proofreading. Science 2006, 313:518-520.
-
(2006)
Science
, vol.313
, pp. 518-520
-
-
Zenkin, N.1
Yuzenkova, Y.2
Severinov, K.3
-
81
-
-
77954655593
-
Central role of the RNA polymerase trigger loop in intrinsic RNA hydrolysis
-
Yuzenkova Y., Zenkin N. Central role of the RNA polymerase trigger loop in intrinsic RNA hydrolysis. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:10878-10883.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 10878-10883
-
-
Yuzenkova, Y.1
Zenkin, N.2
-
82
-
-
77950998789
-
Evidence that transcript cleavage is essential for RNA polymerase II transcription and cell viability
-
Sigurdsson S., Dirac-Svejstrup A.B., Svejstrup J.Q. Evidence that transcript cleavage is essential for RNA polymerase II transcription and cell viability. Mol. Cell 2010, 38:202-210.
-
(2010)
Mol. Cell
, vol.38
, pp. 202-210
-
-
Sigurdsson, S.1
Dirac-Svejstrup, A.B.2
Svejstrup, J.Q.3
-
83
-
-
33645119890
-
Structural perspective on mutations affecting the function of multisubunit RNA polymerases
-
Trinh V., Langelier M.F., Archambault J., Coulombe B. Structural perspective on mutations affecting the function of multisubunit RNA polymerases. Microbiol. Mol. Biol. Rev. 2006, 70:12-36.
-
(2006)
Microbiol. Mol. Biol. Rev.
, vol.70
, pp. 12-36
-
-
Trinh, V.1
Langelier, M.F.2
Archambault, J.3
Coulombe, B.4
-
84
-
-
0027306799
-
Genetics of eukaryotic RNA polymerases I, II, and III
-
Archambault J., Friesen J.D. Genetics of eukaryotic RNA polymerases I, II, and III. Microbiol. Rev. 1993, 57:703-724.
-
(1993)
Microbiol. Rev.
, vol.57
, pp. 703-724
-
-
Archambault, J.1
Friesen, J.D.2
-
85
-
-
0024977379
-
A suppressor of a HIS4 transcriptional defect encodes a protein with homology to the catalytic subunit of protein phosphatases
-
Arndt K.T., Styles C.A., Fink G.R. A suppressor of a HIS4 transcriptional defect encodes a protein with homology to the catalytic subunit of protein phosphatases. Cell 1989, 56:527-537.
-
(1989)
Cell
, vol.56
, pp. 527-537
-
-
Arndt, K.T.1
Styles, C.A.2
Fink, G.R.3
-
86
-
-
0031947494
-
Stimulation of transcription by mutations affecting conserved regions of RNA polymerase II
-
Archambault J., Jansma D.B., Kawasoe J.H., Arndt K.T., Greenblatt J., Friesen J.D. Stimulation of transcription by mutations affecting conserved regions of RNA polymerase II. J. Bacteriol. 1998, 180:2590-2598.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 2590-2598
-
-
Archambault, J.1
Jansma, D.B.2
Kawasoe, J.H.3
Arndt, K.T.4
Greenblatt, J.5
Friesen, J.D.6
-
87
-
-
51949114423
-
Mutations of RNA polymerase II activate key genes of the nucleoside triphosphate biosynthetic pathways
-
Kwapisz M., Wery M., Despres D., Ghavi-Helm Y., Soutourina J., Thuriaux P., Lacroute F. Mutations of RNA polymerase II activate key genes of the nucleoside triphosphate biosynthetic pathways. EMBO J. 2008, 27:2411-2421.
-
(2008)
EMBO J.
, vol.27
, pp. 2411-2421
-
-
Kwapisz, M.1
Wery, M.2
Despres, D.3
Ghavi-Helm, Y.4
Soutourina, J.5
Thuriaux, P.6
Lacroute, F.7
-
88
-
-
50249183162
-
Futile cycle of transcription initiation and termination modulates the response to nucleotide shortage in S. cerevisiae
-
Thiebaut M., Colin J., Neil H., Jacquier A., Seraphin B., Lacroute F., Libri D. Futile cycle of transcription initiation and termination modulates the response to nucleotide shortage in S. cerevisiae. Mol. Cell 2008, 31:671-682.
-
(2008)
Mol. Cell
, vol.31
, pp. 671-682
-
-
Thiebaut, M.1
Colin, J.2
Neil, H.3
Jacquier, A.4
Seraphin, B.5
Lacroute, F.6
Libri, D.7
-
89
-
-
0025767136
-
Mutations in the three largest subunits of yeast RNA polymerase II that affect enzyme assembly
-
Kolodziej P.A., Young R.A. Mutations in the three largest subunits of yeast RNA polymerase II that affect enzyme assembly. Mol. Cell. Biol. 1991, 11:4669-4678.
-
(1991)
Mol. Cell. Biol.
, vol.11
, pp. 4669-4678
-
-
Kolodziej, P.A.1
Young, R.A.2
-
90
-
-
0024679301
-
KEX2 mutations suppress RNA polymerase II mutants and alter the temperature range of yeast cell growth
-
Martin C., Young R.A. KEX2 mutations suppress RNA polymerase II mutants and alter the temperature range of yeast cell growth. Mol. Cell. Biol. 1989, 9:2341-2349.
-
(1989)
Mol. Cell. Biol.
, vol.9
, pp. 2341-2349
-
-
Martin, C.1
Young, R.A.2
-
91
-
-
0026672441
-
Genetic interaction between transcription elongation factor TFIIS and RNA polymerase II
-
Archambault J., Lacroute F., Ruet A., Friesen J.D. Genetic interaction between transcription elongation factor TFIIS and RNA polymerase II. Mol. Cell. Biol. 1992, 12:4142-4152.
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 4142-4152
-
-
Archambault, J.1
Lacroute, F.2
Ruet, A.3
Friesen, J.D.4
-
92
-
-
0025993771
-
Mutations in a conserved region of RNA polymerase II influence the accuracy of mRNA start site selection
-
Hekmatpanah D.S., Young R.A. Mutations in a conserved region of RNA polymerase II influence the accuracy of mRNA start site selection. Mol. Cell. Biol. 1991, 11:5781-5791.
-
(1991)
Mol. Cell. Biol.
, vol.11
, pp. 5781-5791
-
-
Hekmatpanah, D.S.1
Young, R.A.2
-
93
-
-
0021152709
-
Mutations affecting Ty-mediated expression of the HIS4 gene of Saccharomyces cerevisiae
-
Winston F., Chaleff D.T., Valent B., Fink G.R. Mutations affecting Ty-mediated expression of the HIS4 gene of Saccharomyces cerevisiae. Genetics 1984, 107:179-197.
-
(1984)
Genetics
, vol.107
, pp. 179-197
-
-
Winston, F.1
Chaleff, D.T.2
Valent, B.3
Fink, G.R.4
-
94
-
-
0345541427
-
Ty-mediated gene expression of the LYS2 and HIS4 genes of Saccharomyces cerevisiae is controlled by the same SPT genes
-
Simchen G., Winston F., Styles C.A., Fink G.R. Ty-mediated gene expression of the LYS2 and HIS4 genes of Saccharomyces cerevisiae is controlled by the same SPT genes. Proc. Natl. Acad. Sci. U. S. A. 1984, 81:2431-2434.
-
(1984)
Proc. Natl. Acad. Sci. U. S. A.
, vol.81
, pp. 2431-2434
-
-
Simchen, G.1
Winston, F.2
Styles, C.A.3
Fink, G.R.4
-
95
-
-
84857427738
-
Chromatin and transcription in yeast
-
Rando O.J., Winston F. Chromatin and transcription in yeast. Genetics 2012, 190:351-387.
-
(2012)
Genetics
, vol.190
, pp. 351-387
-
-
Rando, O.J.1
Winston, F.2
-
96
-
-
55549105741
-
Yeast Pol II start-site selection: the long and the short of it
-
Corden J.L. Yeast Pol II start-site selection: the long and the short of it. EMBO Rep. 2008, 9:1084-1086.
-
(2008)
EMBO Rep.
, vol.9
, pp. 1084-1086
-
-
Corden, J.L.1
-
97
-
-
0028115840
-
The sua8 suppressors of Saccharomyces cerevisiae encode replacements of conserved residues within the largest subunit of RNA polymerase II and affect transcription start site selection similarly to sua7 (TFIIB) mutations
-
Berroteran R.W., Ware D.E., Hampsey M. The sua8 suppressors of Saccharomyces cerevisiae encode replacements of conserved residues within the largest subunit of RNA polymerase II and affect transcription start site selection similarly to sua7 (TFIIB) mutations. Mol. Cell. Biol. 1994, 14:226-237.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 226-237
-
-
Berroteran, R.W.1
Ware, D.E.2
Hampsey, M.3
-
98
-
-
27144526242
-
A functional role for the switch 2 region of yeast RNA polymerase II in transcription start site utilization and abortive initiation
-
Majovski R.C., Khaperskyy D.A., Ghazy M.A., Ponticelli A.S. A functional role for the switch 2 region of yeast RNA polymerase II in transcription start site utilization and abortive initiation. J. Biol. Chem. 2005, 280:34917-34923.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 34917-34923
-
-
Majovski, R.C.1
Khaperskyy, D.A.2
Ghazy, M.A.3
Ponticelli, A.S.4
-
99
-
-
1942422184
-
Functional interaction between TFIIB and the Rpb2 subunit of RNA polymerase II: implications for the mechanism of transcription initiation
-
Chen B.S., Hampsey M. Functional interaction between TFIIB and the Rpb2 subunit of RNA polymerase II: implications for the mechanism of transcription initiation. Mol. Cell. Biol. 2004, 24:3983-3991.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 3983-3991
-
-
Chen, B.S.1
Hampsey, M.2
-
100
-
-
0028913403
-
RNA polymerase II subunit RPB9 is required for accurate start site selection
-
Hull M.W., McKune K., Woychik N.A. RNA polymerase II subunit RPB9 is required for accurate start site selection. Genes Dev. 1995, 9:481-490.
-
(1995)
Genes Dev.
, vol.9
, pp. 481-490
-
-
Hull, M.W.1
McKune, K.2
Woychik, N.A.3
-
101
-
-
0028609129
-
Role of a small RNA pol II subunit in TATA to transcription start site spacing
-
Furter-Graves E.M., Hall B.D., Furter R. Role of a small RNA pol II subunit in TATA to transcription start site spacing. Nucleic Acids Res. 1994, 22:4932-4936.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4932-4936
-
-
Furter-Graves, E.M.1
Hall, B.D.2
Furter, R.3
-
102
-
-
0029989059
-
Functional interaction between TFIIB and the Rpb9 (Ssu73) subunit of RNA polymerase II in Saccharomyces cerevisiae
-
Sun Z.W., Tessmer A., Hampsey M. Functional interaction between TFIIB and the Rpb9 (Ssu73) subunit of RNA polymerase II in Saccharomyces cerevisiae. Nucleic Acids Res. 1996, 24:2560-2566.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 2560-2566
-
-
Sun, Z.W.1
Tessmer, A.2
Hampsey, M.3
-
103
-
-
0028921452
-
Identification of the gene (SSU71/TFG1) encoding the largest subunit of transcription factor TFIIF as a suppressor of a TFIIB mutation in Saccharomyces cerevisiae
-
Sun Z.W., Hampsey M. Identification of the gene (SSU71/TFG1) encoding the largest subunit of transcription factor TFIIF as a suppressor of a TFIIB mutation in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. U. S. A. 1995, 92:3127-3131.
-
(1995)
Proc. Natl. Acad. Sci. U. S. A.
, vol.92
, pp. 3127-3131
-
-
Sun, Z.W.1
Hampsey, M.2
-
104
-
-
10044250105
-
Amino acid substitutions in yeast TFIIF confer upstream shifts in transcription initiation and altered interaction with RNA polymerase II
-
Ghazy M.A., Brodie S.A., Ammerman M.L., Ziegler L.M., Ponticelli A.S. Amino acid substitutions in yeast TFIIF confer upstream shifts in transcription initiation and altered interaction with RNA polymerase II. Mol. Cell. Biol. 2004, 24:10975-10985.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 10975-10985
-
-
Ghazy, M.A.1
Brodie, S.A.2
Ammerman, M.L.3
Ziegler, L.M.4
Ponticelli, A.S.5
-
105
-
-
77149124577
-
Position of the general transcription factor TFIIF within the RNA polymerase II transcription preinitiation complex
-
Eichner J., Chen H.T., Warfield L., Hahn S. Position of the general transcription factor TFIIF within the RNA polymerase II transcription preinitiation complex. EMBO J. 2010, 29:706-716.
-
(2010)
EMBO J.
, vol.29
, pp. 706-716
-
-
Eichner, J.1
Chen, H.T.2
Warfield, L.3
Hahn, S.4
-
106
-
-
0026559077
-
The yeast SUA7 gene encodes a homolog of human transcription factor TFIIB and is required for normal start site selection in vivo
-
Pinto I., Ware D.E., Hampsey M. The yeast SUA7 gene encodes a homolog of human transcription factor TFIIB and is required for normal start site selection in vivo. Cell 1992, 68:977-988.
-
(1992)
Cell
, vol.68
, pp. 977-988
-
-
Pinto, I.1
Ware, D.E.2
Hampsey, M.3
-
107
-
-
0028019848
-
Characterization of sua7 mutations defines a domain of TFIIB involved in transcription start site selection in yeast
-
Pinto I., Wu W.H., Na J.G., Hampsey M. Characterization of sua7 mutations defines a domain of TFIIB involved in transcription start site selection in yeast. J. Biol. Chem. 1994, 269:30569-30573.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 30569-30573
-
-
Pinto, I.1
Wu, W.H.2
Na, J.G.3
Hampsey, M.4
-
108
-
-
0033551810
-
An interaction between the N-terminal region and the core domain of yeast TFIIB promotes the formation of TATA-binding protein-TFIIB-DNA complexes
-
Bangur C.S., Faitar S.L., Folster J.P., Ponticelli A.S. An interaction between the N-terminal region and the core domain of yeast TFIIB promotes the formation of TATA-binding protein-TFIIB-DNA complexes. J. Biol. Chem. 1999, 274:23203-23209.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 23203-23209
-
-
Bangur, C.S.1
Faitar, S.L.2
Folster, J.P.3
Ponticelli, A.S.4
-
109
-
-
0037100611
-
The role of TFIIB-RNA polymerase II interaction in start site selection in yeast cells
-
Zhang D.Y., Carson D.J., Ma J. The role of TFIIB-RNA polymerase II interaction in start site selection in yeast cells. Nucleic Acids Res. 2002, 30:3078-3085.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3078-3085
-
-
Zhang, D.Y.1
Carson, D.J.2
Ma, J.3
-
110
-
-
0032504245
-
The N-terminal region of yeast TFIIB contains two adjacent functional domains involved in stable RNA polymerase II binding and transcription start site selection
-
Pardee T.S., Bangur C.S., Ponticelli A.S. The N-terminal region of yeast TFIIB contains two adjacent functional domains involved in stable RNA polymerase II binding and transcription start site selection. J. Biol. Chem. 1998, 273:17859-17864.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 17859-17864
-
-
Pardee, T.S.1
Bangur, C.S.2
Ponticelli, A.S.3
-
111
-
-
84855275509
-
Mechanism of start site selection by RNA polymerase II: interplay between TFIIB and Ssl2/XPB helicase subunit of TFIIH
-
Goel S., Krishnamurthy S., Hampsey M. Mechanism of start site selection by RNA polymerase II: interplay between TFIIB and Ssl2/XPB helicase subunit of TFIIH. J. Biol. Chem. 2012, 287:557-567.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 557-567
-
-
Goel, S.1
Krishnamurthy, S.2
Hampsey, M.3
-
112
-
-
0026322430
-
Extragenic suppressors of a translation initiation defect in the cyc1 gene of Saccharomyces cerevisiae
-
Hampsey M., Na J.G., Pinto I., Ware D.E., Berroteran R.W. Extragenic suppressors of a translation initiation defect in the cyc1 gene of Saccharomyces cerevisiae. Biochimie 1991, 73:1445-1455.
-
(1991)
Biochimie
, vol.73
, pp. 1445-1455
-
-
Hampsey, M.1
Na, J.G.2
Pinto, I.3
Ware, D.E.4
Berroteran, R.W.5
-
113
-
-
0024315267
-
Molecular mechanisms of transcriptional regulation in yeast
-
Struhl K. Molecular mechanisms of transcriptional regulation in yeast. Annu. Rev. Biochem. 1989, 58:1051-1077.
-
(1989)
Annu. Rev. Biochem.
, vol.58
, pp. 1051-1077
-
-
Struhl, K.1
-
114
-
-
60349122111
-
A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome
-
Venters B.J., Pugh B.F. A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome. Genome Res. 2009, 19:360-371.
-
(2009)
Genome Res.
, vol.19
, pp. 360-371
-
-
Venters, B.J.1
Pugh, B.F.2
-
115
-
-
1542285166
-
A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae
-
Huisinga K.L., Pugh B.F. A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae. Mol. Cell 2004, 13:573-585.
-
(2004)
Mol. Cell
, vol.13
, pp. 573-585
-
-
Huisinga, K.L.1
Pugh, B.F.2
-
116
-
-
84858165145
-
Genome-wide structure and organization of eukaryotic pre-initiation complexes
-
Rhee H.S., Pugh B.F. Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature 2012, 483:295-301.
-
(2012)
Nature
, vol.483
, pp. 295-301
-
-
Rhee, H.S.1
Pugh, B.F.2
-
117
-
-
34547683177
-
The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex
-
Chen H.T., Warfield L., Hahn S. The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex. Nat. Struct. Mol. Biol. 2007, 14:696-703.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 696-703
-
-
Chen, H.T.1
Warfield, L.2
Hahn, S.3
-
118
-
-
77149146167
-
Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry
-
Chen Z.A., Jawhari A., Fischer L., Buchen C., Tahir S., Kamenski T., Rasmussen M., Lariviere L., Bukowski-Wills J.C., Nilges M., Cramer P., Rappsilber J. Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry. EMBO J. 2010, 29:717-726.
-
(2010)
EMBO J.
, vol.29
, pp. 717-726
-
-
Chen, Z.A.1
Jawhari, A.2
Fischer, L.3
Buchen, C.4
Tahir, S.5
Kamenski, T.6
Rasmussen, M.7
Lariviere, L.8
Bukowski-Wills, J.C.9
Nilges, M.10
Cramer, P.11
Rappsilber, J.12
-
119
-
-
84864952483
-
Evidence that RNA polymerase II and not TFIIB is responsible for the difference in transcription initiation patterns between Saccharomyces cerevisiae and Schizosaccharomyces pombe
-
Yang C., Ponticelli A.S. Evidence that RNA polymerase II and not TFIIB is responsible for the difference in transcription initiation patterns between Saccharomyces cerevisiae and Schizosaccharomyces pombe. Nucleic Acids Res. 2012, 40:6495-6507.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 6495-6507
-
-
Yang, C.1
Ponticelli, A.S.2
-
120
-
-
33744913056
-
Quantitative analysis of in vivo initiator selection by yeast RNA polymerase II supports a scanning model
-
Kuehner J.N., Brow D.A. Quantitative analysis of in vivo initiator selection by yeast RNA polymerase II supports a scanning model. J. Biol. Chem. 2006, 281:14119-14128.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 14119-14128
-
-
Kuehner, J.N.1
Brow, D.A.2
-
121
-
-
0024449473
-
Initiation by yeast RNA polymerase II at the adenoviral major late promoter in vitro
-
Lue N.F., Flanagan P.M., Sugimoto K., Kornberg R.D. Initiation by yeast RNA polymerase II at the adenoviral major late promoter in vitro. Science 1989, 246:661-664.
-
(1989)
Science
, vol.246
, pp. 661-664
-
-
Lue, N.F.1
Flanagan, P.M.2
Sugimoto, K.3
Kornberg, R.D.4
-
122
-
-
0020985464
-
Complete sequence of a eukaryotic regulatory gene
-
Hubert J.C., Guyonvarch A., Kammerer B., Exinger F., Liljelund P., Lacroute F. Complete sequence of a eukaryotic regulatory gene. EMBO J. 1983, 2:2071-2073.
-
(1983)
EMBO J.
, vol.2
, pp. 2071-2073
-
-
Hubert, J.C.1
Guyonvarch, A.2
Kammerer, B.3
Exinger, F.4
Liljelund, P.5
Lacroute, F.6
-
123
-
-
0026633013
-
6-Azauracil inhibition of GTP biosynthesis in Saccharomyces cerevisiae
-
Exinger F., Lacroute F. 6-Azauracil inhibition of GTP biosynthesis in Saccharomyces cerevisiae. Curr. Genet. 1992, 22:9-11.
-
(1992)
Curr. Genet.
, vol.22
, pp. 9-11
-
-
Exinger, F.1
Lacroute, F.2
-
124
-
-
0041305816
-
Perturbation of transcription elongation influences the fidelity of internal exon inclusion in Saccharomyces cerevisiae
-
Howe K.J., Kane C.M., Ares M. Perturbation of transcription elongation influences the fidelity of internal exon inclusion in Saccharomyces cerevisiae. RNA 2003, 9:993-1006.
-
(2003)
RNA
, vol.9
, pp. 993-1006
-
-
Howe, K.J.1
Kane, C.M.2
Ares, M.3
-
125
-
-
0034974850
-
TFIIS enhances transcriptional elongation through an artificial arrest site in vivo
-
Kulish D., Struhl K. TFIIS enhances transcriptional elongation through an artificial arrest site in vivo. Mol. Cell. Biol. 2001, 21:4162-4168.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 4162-4168
-
-
Kulish, D.1
Struhl, K.2
-
126
-
-
15244358670
-
Distinction and relationship between elongation rate and processivity of RNA polymerase II in vivo
-
Mason P.B., Struhl K. Distinction and relationship between elongation rate and processivity of RNA polymerase II in vivo. Mol. Cell 2005, 17:831-840.
-
(2005)
Mol. Cell
, vol.17
, pp. 831-840
-
-
Mason, P.B.1
Struhl, K.2
-
127
-
-
2942561052
-
Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors
-
Grigull J., Mnaimneh S., Pootoolal J., Robinson M.D., Hughes T.R. Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors. Mol. Cell. Biol. 2004, 24:5534-5547.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 5534-5547
-
-
Grigull, J.1
Mnaimneh, S.2
Pootoolal, J.3
Robinson, M.D.4
Hughes, T.R.5
-
128
-
-
1342269199
-
Large-scale screening of yeast mutants for sensitivity to the IMP dehydrogenase inhibitor 6-azauracil
-
Riles L., Shaw R.J., Johnston M., Reines D. Large-scale screening of yeast mutants for sensitivity to the IMP dehydrogenase inhibitor 6-azauracil. Yeast 2004, 21:241-248.
-
(2004)
Yeast
, vol.21
, pp. 241-248
-
-
Riles, L.1
Shaw, R.J.2
Johnston, M.3
Reines, D.4
-
129
-
-
0037178849
-
Screening the yeast "disruptome" for mutants affecting resistance to the immunosuppressive drug, mycophenolic acid
-
Desmoucelles C., Pinson B., Saint-Marc C., Daignan-Fornier B. Screening the yeast "disruptome" for mutants affecting resistance to the immunosuppressive drug, mycophenolic acid. J. Biol. Chem. 2002, 277:27036-27044.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 27036-27044
-
-
Desmoucelles, C.1
Pinson, B.2
Saint-Marc, C.3
Daignan-Fornier, B.4
-
130
-
-
44949166705
-
Properties of an intergenic terminator and start site switch that regulate IMD2 transcription in yeast
-
Jenks M.H., O'Rourke T.W., Reines D. Properties of an intergenic terminator and start site switch that regulate IMD2 transcription in yeast. Mol. Cell. Biol. 2008, 28:3883-3893.
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 3883-3893
-
-
Jenks, M.H.1
O'Rourke, T.W.2
Reines, D.3
-
131
-
-
34147208065
-
Metabolic regulation of IMD2 transcription and an unusual DNA element that generates short transcripts
-
Kopcewicz K.A., O'Rourke T.W., Reines D. Metabolic regulation of IMD2 transcription and an unusual DNA element that generates short transcripts. Mol. Cell. Biol. 2007, 27:2821-2829.
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 2821-2829
-
-
Kopcewicz, K.A.1
O'Rourke, T.W.2
Reines, D.3
-
132
-
-
28844493927
-
Dissection of the molecular basis of mycophenolate resistance in Saccharomyces cerevisiae
-
Jenks M.H., Reines D. Dissection of the molecular basis of mycophenolate resistance in Saccharomyces cerevisiae. Yeast 2005, 22:1181-1190.
-
(2005)
Yeast
, vol.22
, pp. 1181-1190
-
-
Jenks, M.H.1
Reines, D.2
-
133
-
-
0042208190
-
Functional distinctions between IMP dehydrogenase genes in providing mycophenolate resistance and guanine prototrophy to yeast
-
Hyle J.W., Shaw R.J., Reines D. Functional distinctions between IMP dehydrogenase genes in providing mycophenolate resistance and guanine prototrophy to yeast. J. Biol. Chem. 2003, 278:28470-28478.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 28470-28478
-
-
Hyle, J.W.1
Shaw, R.J.2
Reines, D.3
-
134
-
-
0035853838
-
Analysis of gene induction and arrest site transcription in yeast with mutations in the transcription elongation machinery
-
Wind-Rotolo M., Reines D. Analysis of gene induction and arrest site transcription in yeast with mutations in the transcription elongation machinery. J. Biol. Chem. 2001, 276:11531-11538.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 11531-11538
-
-
Wind-Rotolo, M.1
Reines, D.2
-
135
-
-
0035980130
-
Regulation of an IMP dehydrogenase gene and its overexpression in drug-sensitive transcription elongation mutants of yeast
-
Shaw R.J., Wilson J.L., Smith K.T., Reines D. Regulation of an IMP dehydrogenase gene and its overexpression in drug-sensitive transcription elongation mutants of yeast. J. Biol. Chem. 2001, 276:32905-32916.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 32905-32916
-
-
Shaw, R.J.1
Wilson, J.L.2
Smith, K.T.3
Reines, D.4
-
136
-
-
0033805924
-
Saccharomyces cerevisiae transcription elongation mutants are defective in PUR5 induction in response to nucleotide depletion
-
Shaw R.J., Reines D. Saccharomyces cerevisiae transcription elongation mutants are defective in PUR5 induction in response to nucleotide depletion. Mol. Cell. Biol. 2000, 20:7427-7437.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 7427-7437
-
-
Shaw, R.J.1
Reines, D.2
-
137
-
-
84864957860
-
TFIIS is required for the balanced expression of the genes encoding ribosomal components under transcriptional stress
-
Gomez-Herreros F., de Miguel-Jimenez L., Morillo-Huesca M., Delgado-Ramos L., Munoz-Centeno M.C., Chavez S. TFIIS is required for the balanced expression of the genes encoding ribosomal components under transcriptional stress. Nucleic Acids Res. 2012, 40:6508-6519.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 6508-6519
-
-
Gomez-Herreros, F.1
de Miguel-Jimenez, L.2
Morillo-Huesca, M.3
Delgado-Ramos, L.4
Munoz-Centeno, M.C.5
Chavez, S.6
-
138
-
-
33644784770
-
Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae
-
Davis C.A., Ares M. Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:3262-3267.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 3262-3267
-
-
Davis, C.A.1
Ares, M.2
-
139
-
-
33751504083
-
Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase
-
Steinmetz E.J., Warren C.L., Kuehner J.N., Panbehi B., Ansari A.Z., Brow D.A. Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase. Mol. Cell 2006, 24:735-746.
-
(2006)
Mol. Cell
, vol.24
, pp. 735-746
-
-
Steinmetz, E.J.1
Warren, C.L.2
Kuehner, J.N.3
Panbehi, B.4
Ansari, A.Z.5
Brow, D.A.6
-
140
-
-
47349099971
-
Regulation of a eukaryotic gene by GTP-dependent start site selection and transcription attenuation
-
Kuehner J.N., Brow D.A. Regulation of a eukaryotic gene by GTP-dependent start site selection and transcription attenuation. Mol. Cell 2008, 31:201-211.
-
(2008)
Mol. Cell
, vol.31
, pp. 201-211
-
-
Kuehner, J.N.1
Brow, D.A.2
-
141
-
-
27744533201
-
Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae
-
Martens J.A., Wu P.Y., Winston F. Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae. Genes Dev. 2005, 19:2695-2704.
-
(2005)
Genes Dev.
, vol.19
, pp. 2695-2704
-
-
Martens, J.A.1
Wu, P.Y.2
Winston, F.3
-
142
-
-
2942560254
-
Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene
-
Martens J.A., Laprade L., Winston F. Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene. Nature 2004, 429:571-574.
-
(2004)
Nature
, vol.429
, pp. 571-574
-
-
Martens, J.A.1
Laprade, L.2
Winston, F.3
-
143
-
-
79952269552
-
Transcription regulation by the noncoding RNA SRG1 requires Spt2-dependent chromatin deposition in the wake of RNA polymerase II
-
Thebault P., Boutin G., Bhat W., Rufiange A., Martens J., Nourani A. Transcription regulation by the noncoding RNA SRG1 requires Spt2-dependent chromatin deposition in the wake of RNA polymerase II. Mol. Cell. Biol. 2011, 31:1288-1300.
-
(2011)
Mol. Cell. Biol.
, vol.31
, pp. 1288-1300
-
-
Thebault, P.1
Boutin, G.2
Bhat, W.3
Rufiange, A.4
Martens, J.5
Nourani, A.6
-
144
-
-
80053440056
-
The Paf1 complex represses SER3 transcription in Saccharomyces cerevisiae by facilitating intergenic transcription-dependent nucleosome occupancy of the SER3 promoter
-
Pruneski J.A., Hainer S.J., Petrov K.O., Martens J.A. The Paf1 complex represses SER3 transcription in Saccharomyces cerevisiae by facilitating intergenic transcription-dependent nucleosome occupancy of the SER3 promoter. Eukaryot. Cell 2011, 10:1283-1294.
-
(2011)
Eukaryot. Cell
, vol.10
, pp. 1283-1294
-
-
Pruneski, J.A.1
Hainer, S.J.2
Petrov, K.O.3
Martens, J.A.4
-
145
-
-
78650873365
-
Intergenic transcription causes repression by directing nucleosome assembly
-
Hainer S.J., Pruneski J.A., Mitchell R.D., Monteverde R.M., Martens J.A. Intergenic transcription causes repression by directing nucleosome assembly. Genes Dev. 2011, 25:29-40.
-
(2011)
Genes Dev.
, vol.25
, pp. 29-40
-
-
Hainer, S.J.1
Pruneski, J.A.2
Mitchell, R.D.3
Monteverde, R.M.4
Martens, J.A.5
-
146
-
-
9144274420
-
Evidence for distinct mechanisms facilitating transcript elongation through chromatin in vivo
-
Kristjuhan A., Svejstrup J.Q. Evidence for distinct mechanisms facilitating transcript elongation through chromatin in vivo. EMBO J. 2004, 23:4243-4252.
-
(2004)
EMBO J.
, vol.23
, pp. 4243-4252
-
-
Kristjuhan, A.1
Svejstrup, J.Q.2
-
147
-
-
70149113767
-
Regulon-specific control of transcription elongation across the yeast genome
-
Pelechano V., Jimeno-Gonzalez S., Rodriguez-Gil A., Garcia-Martinez J., Perez-Ortin J.E., Chavez S. Regulon-specific control of transcription elongation across the yeast genome. PLoS Genet. 2009, 5:e1000614.
-
(2009)
PLoS Genet.
, vol.5
-
-
Pelechano, V.1
Jimeno-Gonzalez, S.2
Rodriguez-Gil, A.3
Garcia-Martinez, J.4
Perez-Ortin, J.E.5
Chavez, S.6
-
148
-
-
77955838693
-
The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors
-
Rodriguez-Gil A., Garcia-Martinez J., Pelechano V., Munoz-Centeno Mde L., Geli V., Perez-Ortin J.E., Chavez S. The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors. Nucleic Acids Res. 2010, 38:4651-4664.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 4651-4664
-
-
Rodriguez-Gil, A.1
Garcia-Martinez, J.2
Pelechano, V.3
Munoz-Centeno Mde, L.4
Geli, V.5
Perez-Ortin, J.E.6
Chavez, S.7
-
150
-
-
79955475464
-
Unravelling the means to an end: RNA polymerase II transcription termination
-
Kuehner J.N., Pearson E.L., Moore C. Unravelling the means to an end: RNA polymerase II transcription termination. Nat. Rev. Mol. Cell Biol. 2011, 12:283-294.
-
(2011)
Nat. Rev. Mol. Cell Biol.
, vol.12
, pp. 283-294
-
-
Kuehner, J.N.1
Pearson, E.L.2
Moore, C.3
-
151
-
-
84862977456
-
CTD tyrosine phosphorylation impairs termination factor recruitment to RNA polymerase II
-
Mayer A., Heidemann M., Lidschreiber M., Schreieck A., Sun M., Hintermair C., Kremmer E., Eick D., Cramer P. CTD tyrosine phosphorylation impairs termination factor recruitment to RNA polymerase II. Science 2012, 336:1723-1725.
-
(2012)
Science
, vol.336
, pp. 1723-1725
-
-
Mayer, A.1
Heidemann, M.2
Lidschreiber, M.3
Schreieck, A.4
Sun, M.5
Hintermair, C.6
Kremmer, E.7
Eick, D.8
Cramer, P.9
-
152
-
-
79958728225
-
Distinct RNA degradation pathways and 3' extensions of yeast non-coding RNA species
-
Marquardt S., Hazelbaker D.Z., Buratowski S. Distinct RNA degradation pathways and 3' extensions of yeast non-coding RNA species. Transcription 2011, 2:145-154.
-
(2011)
Transcription
, vol.2
, pp. 145-154
-
-
Marquardt, S.1
Hazelbaker, D.Z.2
Buratowski, S.3
-
153
-
-
84867285810
-
A genetic screen for terminator function in yeast identifies a role for a new functional domain in termination factor Nab3
-
Loya T.J., O'Rourke T.W., Reines D. A genetic screen for terminator function in yeast identifies a role for a new functional domain in termination factor Nab3. Nucleic Acids Res. 2012, 40:7476-7491.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 7476-7491
-
-
Loya, T.J.1
O'Rourke, T.W.2
Reines, D.3
-
154
-
-
0025877255
-
Transcription on nucleosomal templates by RNA polymerase II in vitro: inhibition of elongation with enhancement of sequence-specific pausing
-
Izban M.G., Luse D.S. Transcription on nucleosomal templates by RNA polymerase II in vitro: inhibition of elongation with enhancement of sequence-specific pausing. Genes Dev. 1991, 5:683-696.
-
(1991)
Genes Dev.
, vol.5
, pp. 683-696
-
-
Izban, M.G.1
Luse, D.S.2
-
155
-
-
84872381240
-
Histone chaperones Spt6 and FACT: similarities and differences in modes of action at transcribed genes
-
Duina A.A. Histone chaperones Spt6 and FACT: similarities and differences in modes of action at transcribed genes. Genet. Res. Int. 2011, 2011:625210.
-
(2011)
Genet. Res. Int.
, vol.2011
, pp. 625210
-
-
Duina, A.A.1
-
156
-
-
8644287437
-
Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II
-
Schwabish M.A., Struhl K. Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II. Mol. Cell. Biol. 2004, 24:10111-10117.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 10111-10117
-
-
Schwabish, M.A.1
Struhl, K.2
-
157
-
-
78751659330
-
Nascent transcript sequencing visualizes transcription at nucleotide resolution
-
Churchman L.S., Weissman J.S. Nascent transcript sequencing visualizes transcription at nucleotide resolution. Nature 2011, 469:368-373.
-
(2011)
Nature
, vol.469
, pp. 368-373
-
-
Churchman, L.S.1
Weissman, J.S.2
-
158
-
-
33750442129
-
Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II
-
Bondarenko V.A., Steele L.M., Ujvari A., Gaykalova D.A., Kulaeva O.I., Polikanov Y.S., Luse D.S., Studitsky V.M. Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II. Mol. Cell 2006, 24:469-479.
-
(2006)
Mol. Cell
, vol.24
, pp. 469-479
-
-
Bondarenko, V.A.1
Steele, L.M.2
Ujvari, A.3
Gaykalova, D.A.4
Kulaeva, O.I.5
Polikanov, Y.S.6
Luse, D.S.7
Studitsky, V.M.8
-
159
-
-
84862979650
-
A map of nucleosome positions in yeast at base-pair resolution
-
Brogaard K., Xi L., Wang J.P., Widom J. A map of nucleosome positions in yeast at base-pair resolution. Nature 2012, 486:496-501.
-
(2012)
Nature
, vol.486
, pp. 496-501
-
-
Brogaard, K.1
Xi, L.2
Wang, J.P.3
Widom, J.4
-
160
-
-
0037022279
-
Structural basis of transcription: alpha-amanitin-RNA polymerase II cocrystal at 2.8 Åresolution
-
Bushnell D.A., Cramer P., Kornberg R.D. Structural basis of transcription: alpha-amanitin-RNA polymerase II cocrystal at 2.8 Åresolution. Proc. Natl. Acad. Sci. U. S. A. 2002, 99:1218-1222.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 1218-1222
-
-
Bushnell, D.A.1
Cramer, P.2
Kornberg, R.D.3
-
162
-
-
0037832543
-
Complete, 12-subunit RNA polymerase II at 4.1-A resolution: implications for the initiation of transcription
-
Bushnell D.A., Kornberg R.D. Complete, 12-subunit RNA polymerase II at 4.1-A resolution: implications for the initiation of transcription. Proc. Natl. Acad. Sci. U. S. A. 2003, 100:6969-6973.
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 6969-6973
-
-
Bushnell, D.A.1
Kornberg, R.D.2
-
163
-
-
0043244876
-
Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage
-
Kettenberger H., Armache K.J., Cramer P. Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage. Cell 2003, 114:347-357.
-
(2003)
Cell
, vol.114
, pp. 347-357
-
-
Kettenberger, H.1
Armache, K.J.2
Cramer, P.3
-
164
-
-
1142274214
-
Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms
-
Bushnell D.A., Westover K.D., Davis R.E., Kornberg R.D. Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms. Science 2004, 303:983-988.
-
(2004)
Science
, vol.303
, pp. 983-988
-
-
Bushnell, D.A.1
Westover, K.D.2
Davis, R.E.3
Kornberg, R.D.4
-
165
-
-
1142310578
-
Structural basis of transcription: separation of RNA from DNA by RNA polymerase II
-
Westover K.D., Bushnell D.A., Kornberg R.D. Structural basis of transcription: separation of RNA from DNA by RNA polymerase II. Science 2004, 303:1014-1016.
-
(2004)
Science
, vol.303
, pp. 1014-1016
-
-
Westover, K.D.1
Bushnell, D.A.2
Kornberg, R.D.3
-
166
-
-
14844290215
-
Structures of complete RNA polymerase II and its subcomplex, Rpb4/7
-
Armache K.J., Mitterweger S., Meinhart A., Cramer P. Structures of complete RNA polymerase II and its subcomplex, Rpb4/7. J. Biol. Chem. 2005, 280:7131-7134.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 7131-7134
-
-
Armache, K.J.1
Mitterweger, S.2
Meinhart, A.3
Cramer, P.4
-
167
-
-
23944521364
-
Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation
-
Tuske S., Sarafianos S.G., Wang X., Hudson B., Sineva E., Mukhopadhyay J., Birktoft J.J., Leroy O., Ismail S., Clark A.D., Dharia C., Napoli A., Laptenko O., Lee J., Borukhov S., Ebright R.H., Arnold E. Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation. Cell 2005, 122:541-552.
-
(2005)
Cell
, vol.122
, pp. 541-552
-
-
Tuske, S.1
Sarafianos, S.G.2
Wang, X.3
Hudson, B.4
Sineva, E.5
Mukhopadhyay, J.6
Birktoft, J.J.7
Leroy, O.8
Ismail, S.9
Clark, A.D.10
Dharia, C.11
Napoli, A.12
Laptenko, O.13
Lee, J.14
Borukhov, S.15
Ebright, R.H.16
Arnold, E.17
-
168
-
-
36249026527
-
Molecular basis of RNA-dependent RNA polymerase II activity
-
Lehmann E., Brueckner F., Cramer P. Molecular basis of RNA-dependent RNA polymerase II activity. Nature 2007, 450:445-449.
-
(2007)
Nature
, vol.450
, pp. 445-449
-
-
Lehmann, E.1
Brueckner, F.2
Cramer, P.3
-
169
-
-
36849078192
-
Mechanism of transcriptional stalling at cisplatin-damaged DNA
-
Damsma G.E., Alt A., Brueckner F., Carell T., Cramer P. Mechanism of transcriptional stalling at cisplatin-damaged DNA. Nat. Struct. Mol. Biol. 2007, 14:1127-1133.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 1127-1133
-
-
Damsma, G.E.1
Alt, A.2
Brueckner, F.3
Carell, T.4
Cramer, P.5
-
170
-
-
33846980409
-
CPD damage recognition by transcribing RNA polymerase II
-
Brueckner F., Hennecke U., Carell T., Cramer P. CPD damage recognition by transcribing RNA polymerase II. Science 2007, 315:859-862.
-
(2007)
Science
, vol.315
, pp. 859-862
-
-
Brueckner, F.1
Hennecke, U.2
Carell, T.3
Cramer, P.4
-
171
-
-
49449102926
-
Structural basis of transcription inhibition by alpha-amanitin and implications for RNA polymerase II translocation
-
Brueckner F., Cramer P. Structural basis of transcription inhibition by alpha-amanitin and implications for RNA polymerase II translocation. Nat. Struct. Mol. Biol. 2008, 15:811-818.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 811-818
-
-
Brueckner, F.1
Cramer, P.2
-
172
-
-
70450171352
-
RNA polymerase II-TFIIB structure and mechanism of transcription initiation
-
Kostrewa D., Zeller M.E., Armache K.J., Seizl M., Leike K., Thomm M., Cramer P. RNA polymerase II-TFIIB structure and mechanism of transcription initiation. Nature 2009, 462:323-330.
-
(2009)
Nature
, vol.462
, pp. 323-330
-
-
Kostrewa, D.1
Zeller, M.E.2
Armache, K.J.3
Seizl, M.4
Leike, K.5
Thomm, M.6
Cramer, P.7
-
173
-
-
74249102477
-
Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism
-
Liu X., Bushnell D.A., Wang D., Calero G., Kornberg R.D. Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism. Science 2010, 327:206-209.
-
(2010)
Science
, vol.327
, pp. 206-209
-
-
Liu, X.1
Bushnell, D.A.2
Wang, D.3
Calero, G.4
Kornberg, R.D.5
-
174
-
-
78650310283
-
Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein
-
Tagami S., Sekine S., Kumarevel T., Hino N., Murayama Y., Kamegamori S., Yamamoto M., Sakamoto K., Yokoyama S. Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein. Nature 2010, 468:978-982.
-
(2010)
Nature
, vol.468
, pp. 978-982
-
-
Tagami, S.1
Sekine, S.2
Kumarevel, T.3
Hino, N.4
Murayama, Y.5
Kamegamori, S.6
Yamamoto, M.7
Sakamoto, K.8
Yokoyama, S.9
-
175
-
-
77953112483
-
X-ray structure and mechanism of RNA polymerase II stalled at an antineoplastic monofunctional platinum-DNA adduct
-
Wang D., Zhu G., Huang X., Lippard S.J. X-ray structure and mechanism of RNA polymerase II stalled at an antineoplastic monofunctional platinum-DNA adduct. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:9584-9589.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 9584-9589
-
-
Wang, D.1
Zhu, G.2
Huang, X.3
Lippard, S.J.4
-
176
-
-
79960966899
-
Initiation complex structure and promoter proofreading
-
Liu X., Bushnell D.A., Silva D.A., Huang X., Kornberg R.D. Initiation complex structure and promoter proofreading. Science 2011, 333:633-637.
-
(2011)
Science
, vol.333
, pp. 633-637
-
-
Liu, X.1
Bushnell, D.A.2
Silva, D.A.3
Huang, X.4
Kornberg, R.D.5
-
177
-
-
79956308538
-
Evolution of two modes of intrinsic RNA polymerase transcript cleavage
-
Ruan W., Lehmann E., Thomm M., Kostrewa D., Cramer P. Evolution of two modes of intrinsic RNA polymerase transcript cleavage. J. Biol. Chem. 2011, 286:18701-18707.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 18701-18707
-
-
Ruan, W.1
Lehmann, E.2
Thomm, M.3
Kostrewa, D.4
Cramer, P.5
-
178
-
-
84872372563
-
-
The PyMOL Molecular Graphics System, Version 1.3r1 Schrödinger, LLC.
-
The PyMOL Molecular Graphics System, Version 1.3r1 Schrödinger, LLC.
-
-
-
|