-
1
-
-
0032447801
-
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
-
Clough S.J., Bent A.F. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 1998, 16:735-743.
-
(1998)
Plant J.
, vol.16
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
2
-
-
48249103199
-
Structure of eukaryotic RNA polymerases
-
Cramer P., Armache K.J., Baumli S., Benkert S., Brueckner F., Buchen C., Damsma G.E., Dengl S., Geiger S.R., Jasiak A.J., et al. Structure of eukaryotic RNA polymerases. Annu. Rev. Biophys. 2008, 37:337-352.
-
(2008)
Annu. Rev. Biophys.
, vol.37
, pp. 337-352
-
-
Cramer, P.1
Armache, K.J.2
Baumli, S.3
Benkert, S.4
Brueckner, F.5
Buchen, C.6
Damsma, G.E.7
Dengl, S.8
Geiger, S.R.9
Jasiak, A.J.10
-
3
-
-
33644872218
-
Gateway-compatible vectors for plant functional genomics and proteomics
-
Earley K.W., Haag J.R., Pontes O., Opper K., Juehne T., Song K., Pikaard C.S. Gateway-compatible vectors for plant functional genomics and proteomics. Plant J. 2006, 45:616-629.
-
(2006)
Plant J.
, vol.45
, pp. 616-629
-
-
Earley, K.W.1
Haag, J.R.2
Pontes, O.3
Opper, K.4
Juehne, T.5
Song, K.6
Pikaard, C.S.7
-
4
-
-
61349107326
-
RNA polymerase IV functions in paramutation in Zea mays
-
Erhard K.F., Stonaker J.L., Parkinson S.E., Lim J.P., Hale C.J., Hollick J.B. RNA polymerase IV functions in paramutation in Zea mays. Science 2009, 323:1201-1205.
-
(2009)
Science
, vol.323
, pp. 1201-1205
-
-
Erhard, K.F.1
Stonaker, J.L.2
Parkinson, S.E.3
Lim, J.P.4
Hale, C.J.5
Hollick, J.B.6
-
5
-
-
77952090735
-
An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation
-
Gao Z., Liu H.L., Daxinger L., Pontes O., He X., Qian W., Lin H., Xie M., Lorkovic Z.J., Zhang S., et al. An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation. Nature 2010, 465:106-109.
-
(2010)
Nature
, vol.465
, pp. 106-109
-
-
Gao, Z.1
Liu, H.L.2
Daxinger, L.3
Pontes, O.4
He, X.5
Qian, W.6
Lin, H.7
Xie, M.8
Lorkovic, Z.J.9
Zhang, S.10
-
6
-
-
0035827332
-
Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution
-
Gnatt A.L., Cramer P., Fu J., Bushnell D.A., Kornberg R.D. Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution. Science 2001, 292:1876-1882.
-
(2001)
Science
, vol.292
, pp. 1876-1882
-
-
Gnatt, A.L.1
Cramer, P.2
Fu, J.3
Bushnell, D.A.4
Kornberg, R.D.5
-
7
-
-
79960716754
-
Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing
-
Haag J.R., Pikaard C.S. Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing. Nat. Rev. Mol. Cell Biol. 2011, 12:483-492.
-
(2011)
Nat. Rev. Mol. Cell Biol.
, vol.12
, pp. 483-492
-
-
Haag, J.R.1
Pikaard, C.S.2
-
8
-
-
58149469958
-
Metal A and metal B sites of nuclear RNA polymerases Pol IV and Pol V are required for siRNA-dependent DNA methylation and gene silencing
-
Haag J.R., Pontes O., Pikaard C.S. Metal A and metal B sites of nuclear RNA polymerases Pol IV and Pol V are required for siRNA-dependent DNA methylation and gene silencing. PLoS ONE 2009, 4:e4110. 10.1371/journal.pone.0004110.
-
(2009)
PLoS ONE
, vol.4
-
-
Haag, J.R.1
Pontes, O.2
Pikaard, C.S.3
-
9
-
-
77950342461
-
The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci
-
Havecker E.R., Wallbridge L.M., Hardcastle T.J., Bush M.S., Kelly K.A., Dunn R.M., Schwach F., Doonan J.H., Baulcombe D.C. The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci. Plant Cell 2010, 22:321-334.
-
(2010)
Plant Cell
, vol.22
, pp. 321-334
-
-
Havecker, E.R.1
Wallbridge, L.M.2
Hardcastle, T.J.3
Bush, M.S.4
Kelly, K.A.5
Dunn, R.M.6
Schwach, F.7
Doonan, J.H.8
Baulcombe, D.C.9
-
10
-
-
26944452405
-
Pathways through the small RNA world of plants
-
Herr A.J. Pathways through the small RNA world of plants. FEBS Lett. 2005, 579:5879-5888.
-
(2005)
FEBS Lett.
, vol.579
, pp. 5879-5888
-
-
Herr, A.J.1
-
11
-
-
14844295120
-
RNA polymerase IV directs silencing of endogenous DNA
-
Herr A.J., Jensen M.B., Dalmay T., Baulcombe D.C. RNA polymerase IV directs silencing of endogenous DNA. Science 2005, 308:118-120.
-
(2005)
Science
, vol.308
, pp. 118-120
-
-
Herr, A.J.1
Jensen, M.B.2
Dalmay, T.3
Baulcombe, D.C.4
-
12
-
-
78651089753
-
Posttranscriptional gene silencing in nuclei
-
Hoffer P., Ivashuta S., Pontes O., Vitins A., Pikaard C., Mroczka A., Wagner N., Voelker T. Posttranscriptional gene silencing in nuclei. Proc. Natl. Acad. Sci. USA 2011, 108:409-414.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 409-414
-
-
Hoffer, P.1
Ivashuta, S.2
Pontes, O.3
Vitins, A.4
Pikaard, C.5
Mroczka, A.6
Wagner, N.7
Voelker, T.8
-
13
-
-
58149271019
-
An atypical RNA polymerase involved in RNA silencing shares small subunits with RNA polymerase II
-
Huang L., Jones A.M., Searle I., Patel K., Vogler H., Hubner N.C., Baulcombe D.C. An atypical RNA polymerase involved in RNA silencing shares small subunits with RNA polymerase II. Nat. Struct. Mol. Biol. 2009, 16:91-93.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 91-93
-
-
Huang, L.1
Jones, A.M.2
Searle, I.3
Patel, K.4
Vogler, H.5
Hubner, N.C.6
Baulcombe, D.C.7
-
14
-
-
22844447304
-
Atypical RNA polymerase subunits required for RNA-directed DNA methylation
-
Kanno T., Huettel B., Mette M.F., Aufsatz W., Jaligot E., Daxinger L., Kreil D.P., Matzke M., Matzke A.J. Atypical RNA polymerase subunits required for RNA-directed DNA methylation. Nat. Genet. 2005, 37:761-765.
-
(2005)
Nat. Genet.
, vol.37
, pp. 761-765
-
-
Kanno, T.1
Huettel, B.2
Mette, M.F.3
Aufsatz, W.4
Jaligot, E.5
Daxinger, L.6
Kreil, D.P.7
Matzke, M.8
Matzke, A.J.9
-
15
-
-
37349041027
-
Functional architecture of RNA polymerase I
-
Kuhn C.D., Geiger S.R., Baumli S., Gartmann M., Gerber J., Jennebach S., Mielke T., Tschochner H., Beckmann R., Cramer P. Functional architecture of RNA polymerase I. Cell 2007, 131:1260-1272.
-
(2007)
Cell
, vol.131
, pp. 1260-1272
-
-
Kuhn, C.D.1
Geiger, S.R.2
Baumli, S.3
Gartmann, M.4
Gerber, J.5
Jennebach, S.6
Mielke, T.7
Tschochner, H.8
Beckmann, R.9
Cramer, P.10
-
16
-
-
58849120615
-
PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit
-
Lahmy S., Pontier D., Cavel E., Vega D., El-Shami M., Kanno T., Lagrange T. PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit. Proc. Natl. Acad. Sci. USA 2009, 106:941-946.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 941-946
-
-
Lahmy, S.1
Pontier, D.2
Cavel, E.3
Vega, D.4
El-Shami, M.5
Kanno, T.6
Lagrange, T.7
-
17
-
-
61449250649
-
Functional divergence in the growing family of RNA polymerases
-
Landick R. Functional divergence in the growing family of RNA polymerases. Structure 2009, 17:323-325.
-
(2009)
Structure
, vol.17
, pp. 323-325
-
-
Landick, R.1
-
18
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
Law J.A., Jacobsen S.E. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet. 2010, 11:204-220.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
19
-
-
77953129746
-
A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis
-
Law J.A., Ausin I., Johnson L.M., Vashisht A.A., Zhu J.K., Wohlschlegel J.A., Jacobsen S.E. A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis. Curr. Biol. 2010, 20:951-956.
-
(2010)
Curr. Biol.
, vol.20
, pp. 951-956
-
-
Law, J.A.1
Ausin, I.2
Johnson, L.M.3
Vashisht, A.A.4
Zhu, J.K.5
Wohlschlegel, J.A.6
Jacobsen, S.E.7
-
20
-
-
79960960568
-
SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV
-
Law J.A., Vashisht A.A., Wohlschlegel J.A., Jacobsen S.E. SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. PLoS Genet. 2011, 7:e1002195. 10.1371/journal.pgen.1002195.
-
(2011)
PLoS Genet.
, vol.7
-
-
Law, J.A.1
Vashisht, A.A.2
Wohlschlegel, J.A.3
Jacobsen, S.E.4
-
21
-
-
36249026527
-
Molecular basis of RNA-dependent RNA polymerase II activity
-
Lehmann E., Brueckner F., Cramer P. Molecular basis of RNA-dependent RNA polymerase II activity. Nature 2007, 450:445-449.
-
(2007)
Nature
, vol.450
, pp. 445-449
-
-
Lehmann, E.1
Brueckner, F.2
Cramer, P.3
-
22
-
-
23944493378
-
Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis
-
Li J., Yang Z., Yu B., Liu J., Chen X. Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis. Curr. Biol. 2005, 15:1501-1507.
-
(2005)
Curr. Biol.
, vol.15
, pp. 1501-1507
-
-
Li, J.1
Yang, Z.2
Yu, B.3
Liu, J.4
Chen, X.5
-
23
-
-
14844302397
-
Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
-
Onodera Y., Haag J.R., Ream T., Costa Nunes P., Pontes O., Pikaard C.S. Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 2005, 120:613-622.
-
(2005)
Cell
, vol.120
, pp. 613-622
-
-
Onodera, Y.1
Haag, J.R.2
Ream, T.3
Costa Nunes, P.4
Pontes, O.5
Pikaard, C.S.6
-
24
-
-
33745690105
-
The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center
-
Pontes O., Li C.F., Costa Nunes P., Haag J., Ream T., Vitins A., Jacobsen S.E., Pikaard C.S. The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell 2006, 126:79-92.
-
(2006)
Cell
, vol.126
, pp. 79-92
-
-
Pontes, O.1
Li, C.F.2
Costa Nunes, P.3
Haag, J.4
Ream, T.5
Vitins, A.6
Jacobsen, S.E.7
Pikaard, C.S.8
-
25
-
-
24344433177
-
Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis
-
Pontier D., Yahubyan G., Vega D., Bulski A., Saez-Vasquez J., Hakimi M.A., Lerbs-Mache S., Colot V., Lagrange T. Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis. Genes Dev. 2005, 19:2030-2040.
-
(2005)
Genes Dev.
, vol.19
, pp. 2030-2040
-
-
Pontier, D.1
Yahubyan, G.2
Vega, D.3
Bulski, A.4
Saez-Vasquez, J.5
Hakimi, M.A.6
Lerbs-Mache, S.7
Colot, V.8
Lagrange, T.9
-
26
-
-
33750435234
-
Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation
-
Qi Y., He X., Wang X.J., Kohany O., Jurka J., Hannon G.J. Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation. Nature 2006, 443:1008-1012.
-
(2006)
Nature
, vol.443
, pp. 1008-1012
-
-
Qi, Y.1
He, X.2
Wang, X.J.3
Kohany, O.4
Jurka, J.5
Hannon, G.J.6
-
27
-
-
58649104893
-
Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II
-
Ream T.S., Haag J.R., Wierzbicki A.T., Nicora C.D., Norbeck A.D., Zhu J.K., Hagen G., Guilfoyle T.J., Pasa-Tolić L., Pikaard C.S. Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II. Mol. Cell 2009, 33:192-203.
-
(2009)
Mol. Cell
, vol.33
, pp. 192-203
-
-
Ream, T.S.1
Haag, J.R.2
Wierzbicki, A.T.3
Nicora, C.D.4
Norbeck, A.D.5
Zhu, J.K.6
Hagen, G.7
Guilfoyle, T.J.8
Pasa-Tolić, L.9
Pikaard, C.S.10
-
28
-
-
78651504121
-
Evolution of multisubunit RNA polymerases in the three domains of life
-
Werner F., Grohmann D. Evolution of multisubunit RNA polymerases in the three domains of life. Nat. Rev. Microbiol. 2011, 9:85-98.
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 85-98
-
-
Werner, F.1
Grohmann, D.2
-
29
-
-
55449131096
-
Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes
-
Wierzbicki A.T., Haag J.R., Pikaard C.S. Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell 2008, 135:635-648.
-
(2008)
Cell
, vol.135
, pp. 635-648
-
-
Wierzbicki, A.T.1
Haag, J.R.2
Pikaard, C.S.3
-
30
-
-
67349112845
-
RNA polymerase V transcription guides ARGONAUTE4 to chromatin
-
Wierzbicki A.T., Ream T.S., Haag J.R., Pikaard C.S. RNA polymerase V transcription guides ARGONAUTE4 to chromatin. Nat. Genet. 2009, 41:630-634.
-
(2009)
Nat. Genet.
, vol.41
, pp. 630-634
-
-
Wierzbicki, A.T.1
Ream, T.S.2
Haag, J.R.3
Pikaard, C.S.4
-
31
-
-
19344374219
-
Genetic and functional diversification of small RNA pathways in plants
-
Xie Z., Johansen L.K., Gustafson A.M., Kasschau K.D., Lellis A.D., Zilberman D., Jacobsen S.E., Carrington J.C. Genetic and functional diversification of small RNA pathways in plants. PLoS Biol. 2004, 2:E104. 10.1371/journal.pbio.0020104.
-
(2004)
PLoS Biol.
, vol.2
-
-
Xie, Z.1
Johansen, L.K.2
Gustafson, A.M.3
Kasschau, K.D.4
Lellis, A.D.5
Zilberman, D.6
Jacobsen, S.E.7
Carrington, J.C.8
|