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Volumn 40, Issue 6, 2012, Pages

In vitro experimental system for analysis of transcription-translation coupling

Author keywords

[No Author keywords available]

Indexed keywords

RNA POLYMERASE;

EID: 84859324213     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr1262     Document Type: Article
Times cited : (28)

References (37)
  • 1
    • 57649129186 scopus 로고    scopus 로고
    • The replisome uses mRNA as a primer after colliding with RNA polymerase
    • Pomerantz, R.T. and O'Donnell, M. (2008) The replisome uses mRNA as a primer after colliding with RNA polymerase. Nature, 456, 762-766
    • (2008) Nature , vol.456 , pp. 762-766
    • Pomerantz, R.T.1    O'Donnell, M.2
  • 2
    • 31844441045 scopus 로고    scopus 로고
    • The mechanism of DNA replication primer synthesis by RNA polymerase
    • DOI 10.1038/nature04337, PII NATURE04337
    • Zenkin, N., Naryshkina, T., Kuznedelov, K. and Severinov, K. (2006) The mechanism of DNA replication primer synthesis by RNA polymerase. Nature, 439, 617-620 (Pubitemid 43185388)
    • (2006) Nature , vol.439 , Issue.7076 , pp. 617-620
    • Zenkin, N.1    Naryshkina, T.2    Kuznedelov, K.3    Severinov, K.4
  • 4
    • 67449113551 scopus 로고    scopus 로고
    • Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae
    • Azvolinsky, A., Giresi, P.G., Lieb, J.D. and Zakian, V.A. (2009) Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae. Mol. Cell, 34, 722-734
    • (2009) Mol. Cell , vol.34 , pp. 722-734
    • Azvolinsky, A.1    Giresi, P.G.2    Lieb, J.D.3    Zakian, V.A.4
  • 5
    • 79952126098 scopus 로고    scopus 로고
    • Co-directional replication-transcription conflicts lead to replication restart
    • Merrikh, H., Macho? n, C., Grainger, W.H., Grossman, A.D. and Soultanas, P. (2011) Co-directional replication-transcription conflicts lead to replication restart. Nature, 470, 554-557
    • (2011) Nature , vol.470 , pp. 554-557
    • Merrikh, H.1    MacHön, C.2    Grainger, W.H.3    Grossman, A.D.4    Soultanas, P.5
  • 6
    • 0026733965 scopus 로고
    • Consequences of replication fork movement through transcription units in vivo
    • French, S. (1992) Consequences of replication fork movement through transcription units in vivo. Science, 258, 1362-1365 (Pubitemid 23007789)
    • (1992) Science , vol.258 , Issue.5086 , pp. 1362-1365
    • French, S.1
  • 7
    • 0022392670 scopus 로고
    • Translation activates the paused transcription complex and restores transcription of the trp operon leader region
    • Landick, R., Carey, J. and Yanofsky, C. (1985) Translation activates the paused transcription complex and restores transcription of the trp operon leader region. Proc. Natl Acad. Sci. USA, 82, 663-667
    • (1985) Proc. Natl Acad. Sci. USA , vol.82 , pp. 663-667
    • Landick, R.1    Carey, J.2    Yanofsky, C.3
  • 8
    • 0022517404 scopus 로고
    • Rho-dependent transcription termination in the tryptophanase operon leader region of Escherichia coli K-12
    • Stewart, V., Landick, R. and Yanofsky, C. (1986) Rho-dependent transcription termination in the tryptophanase operon leader region of Escherichia coli K-12. J. Bacteriol., 166, 217-223 (Pubitemid 16043303)
    • (1986) Journal of Bacteriology , vol.166 , Issue.1 , pp. 217-223
    • Stewart, V.1    Landick, R.2    Yanofsky, C.3
  • 9
    • 0346275193 scopus 로고    scopus 로고
    • Rho's Role in Transcription Attenuation in the tna Operon of E. Coli
    • DOI 10.1016/S0076-6879(03)71029-5
    • Gong, F. and Yanofsky, C. (2003) Rho's role in transcription attenuation in the tna operon of E. coli. Methods Enzymol., 371, 383-391 (Pubitemid 37542745)
    • (2003) Methods in Enzymology , vol.371 , pp. 383-391
    • Gong, F.1    Yanofsky, C.2
  • 10
    • 0033522905 scopus 로고    scopus 로고
    • Escherichia coli DNA topoisomerase i inhibits R-loop formation by relaxing transcription-induced negative supercoiling
    • Massé, E. and Drolet, M. (1999) Escherichia coli DNA topoisomerase I inhibits R-loop formation by relaxing transcription-induced negative supercoiling. J. Biol. Chem., 274, 16659-16664
    • (1999) J. Biol. Chem. , vol.274 , pp. 16659-16664
    • Massé, E.1    Drolet, M.2
  • 11
    • 77951589688 scopus 로고    scopus 로고
    • Cooperation between translating ribosomes and RNA polymerase in transcription elongation
    • Proshkin, S., Rahmouni, A.R., Mironov, A. and Nudler, E. (2010) Cooperation between translating ribosomes and RNA polymerase in transcription elongation. Science, 328, 504-508
    • (2010) Science , vol.328 , pp. 504-508
    • Proshkin, S.1    Rahmouni, A.R.2    Mironov, A.3    Nudler, E.4
  • 13
    • 0029152885 scopus 로고
    • The potentials of the in vitro protein biosynthesis system
    • Stiege, W. and Erdmann, V.A. (1995) The potentials of the in vitro protein biosynthesis system. J. Biotechnol., 41, 81-90
    • (1995) J. Biotechnol. , vol.41 , pp. 81-90
    • Stiege, W.1    Erdmann, V.A.2
  • 14
    • 0024297305 scopus 로고
    • A continuous cell-free translation system capable of producing polypeptides in high yield
    • Spirin, A.S., Baranov, V.I., Ryabova, L.A., Ovodov, S.Y. and Alakhov, Y.B. (1988) A continuous cell-free translation system capable of producing polypeptides in high yield. Science, 242, 1162-1164
    • (1988) Science , vol.242 , pp. 1162-1164
    • Spirin, A.S.1    Baranov, V.I.2    Ryabova, L.A.3    Ovodov, S.Y.4    Alakhov, Y.B.5
  • 15
    • 0345884910 scopus 로고    scopus 로고
    • Methods of walking with the RNA polymerase
    • DOI 10.1016/S0076-6879(03)71011-8
    • Nudler, E., Gusarov, I. and Bar-Nahum, G. (2003) Methods of walking with the RNA polymerase. Methods Enzymol., 371, 160-169 (Pubitemid 37542727)
    • (2003) Methods in Enzymology , vol.371 , pp. 160-169
    • Nudler, E.1    Gusarov, I.2    Bar-Nahum, G.3
  • 16
    • 0027744758 scopus 로고
    • Recombinant Escherichia coli RNA polymerase - Purification of individually overexpressed subunits and in vitro assembly
    • DOI 10.1006/prep.1993.1066
    • Borukhov, S. and Goldfarb, A. (1993) Recombinant Escherichia coli RNA polymerase: purification of individually overexpressed subunits and in vitro assembly. Protein Expr. Purif., 4, 503-511 (Pubitemid 2007168)
    • (1993) Protein Expression and Purification , vol.4 , Issue.6 , pp. 503-511
    • Borukhov, S.1    Goldfarb, A.2
  • 17
    • 0024334898 scopus 로고
    • Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites
    • DOI 10.1016/0092-8674(89)90128-1
    • Moazed, D. and Noller, H.F. (1989) Interaction of tRNA with 23S rRNA in the ribosomal A, P and E sites. Cell, 57, 585-597 (Pubitemid 19140644)
    • (1989) Cell , vol.57 , Issue.4 , pp. 585-597
    • Moazed, D.1    Noller, H.F.2
  • 18
    • 0035947179 scopus 로고    scopus 로고
    • Cleavage of mitochondria-like transfer RNAs expressed in Escherichia coli
    • DOI 10.1016/S0014-5793(01)02443-7, PII S0014579301024437
    • Bourdeau, V., Paquin, B., Cedergren, R. and Delihas, N. (2001) Cleavage of mitochondria-like transfer RNAs expressed in Escherichia coli. FEBS Lett., 497, 90-94 (Pubitemid 32476883)
    • (2001) FEBS Letters , vol.497 , Issue.2-3 , pp. 90-94
    • Bourdeau, V.1    Paquin, B.2    Cedergren, R.3    Delihas, N.4
  • 19
    • 38649091983 scopus 로고    scopus 로고
    • Preparation and evaluation of acylated tRNAs
    • DOI 10.1016/j.ymeth.2007.09.003, PII S1046202307001697
    • Walker, S.E. and Fredrick, K. (2008) Preparation and evaluation of acylated tRNAs. Methods, 44, 81-86 (Pubitemid 351172807)
    • (2008) Methods , vol.44 , Issue.2 , pp. 81-86
    • Walker, S.E.1    Fredrick, K.2
  • 20
    • 0023651444 scopus 로고
    • Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
    • Milligan, J.F., Groebe, D.R., Witherell, G.W. and Uhlenbeck, O.C. (1987) Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acids Res., 15, 8783-8798
    • (1987) Nucleic Acids Res. , vol.15 , pp. 8783-8798
    • Milligan, J.F.1    Groebe, D.R.2    Witherell, G.W.3    Uhlenbeck, O.C.4
  • 21
    • 77954655593 scopus 로고    scopus 로고
    • Central role of the RNA polymerase trigger loop in intrinsic RNA hydrolysis
    • Yuzenkova, Y. and Zenkin, N. (2010) Central role of the RNA polymerase trigger loop in intrinsic RNA hydrolysis. Proc. Natl Acad. Sci. USA, 107, 10878-10883
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 10878-10883
    • Yuzenkova, Y.1    Zenkin, N.2
  • 23
    • 33746634704 scopus 로고    scopus 로고
    • Transcript-assisted transcriptional proofreading
    • DOI 10.1126/science.1127422
    • Zenkin, N., Yuzenkova, Y. and Severinov, K. (2006) Transcript-assisted transcriptional proofreading. Science, 313, 518-520 (Pubitemid 44148455)
    • (2006) Science , vol.313 , Issue.5786 , pp. 518-520
    • Zenkin, N.1    Yuzenkova, Y.2    Severinov, K.3
  • 24
    • 79961184265 scopus 로고    scopus 로고
    • Controlled interplay between trigger loop and Gre factor in the RNA polymerase active centre
    • Roghanian, M., Yuzenkova, Y. and Zenkin, N. (2011) Controlled interplay between trigger loop and Gre factor in the RNA polymerase active centre. Nucleic Acids Res., 39, 4352-4359
    • (2011) Nucleic Acids Res. , vol.39 , pp. 4352-4359
    • Roghanian, M.1    Yuzenkova, Y.2    Zenkin, N.3
  • 25
    • 58149354143 scopus 로고    scopus 로고
    • Quality control by the ribosome following peptide bond formation
    • Zaher, H.S. and Green, R. (2009) Quality control by the ribosome following peptide bond formation. Nature, 457, 161-166
    • (2009) Nature , vol.457 , pp. 161-166
    • Zaher, H.S.1    Green, R.2
  • 26
    • 11844292767 scopus 로고    scopus 로고
    • MRNA helicase activity of the ribosome
    • DOI 10.1016/j.cell.2004.11.042, PII S0092867404011468
    • Takyar, S., Hickerson, R.P. and Noller, H.F. (2005) mRNA helicase activity of the ribosome. Cell, 120, 49-58 (Pubitemid 40094602)
    • (2005) Cell , vol.120 , Issue.1 , pp. 49-58
    • Takyar, S.1    Hickerson, R.P.2    Noller, H.F.3
  • 27
    • 29844448116 scopus 로고    scopus 로고
    • The interaction between C75 of tRNA and the A loop of the ribosome stimulates peptidyl transferase activity
    • DOI 10.1261/rna.2256706
    • Brunelle, J.L., Youngman, E.M., Sharma, D. and Green, R. (2006) The interaction between C75 of tRNA and the A loop of the ribosome stimulates peptidyl transferase activity. RNA, 12, 33-39 (Pubitemid 43037451)
    • (2006) RNA , vol.12 , Issue.1 , pp. 33-39
    • Brunelle, J.L.1    Youngman, E.M.2    Sharma, D.3    Green, R.4
  • 28
    • 0014963741 scopus 로고
    • T4 bacteriophage gene 32: A structural protein in the replication and recombination of DNA
    • Alberts, B.M. and Frey, L. (1970) T4 bacteriophage gene 32: a structural protein in the replication and recombination of DNA. Nature, 227, 1313-1318
    • (1970) Nature , vol.227 , pp. 1313-1318
    • Alberts, B.M.1    Frey, L.2
  • 30
    • 74349123303 scopus 로고    scopus 로고
    • Three new RelE-homologous mRNA interferases of Escherichia coli differentially induced by environmental stresses
    • Christensen-Dalsgaard, M., Jágensen, M.G. and Gerdes, K. (2010) Three new RelE-homologous mRNA interferases of Escherichia coli differentially induced by environmental stresses. Mol. Microbiol., 75, 333-348
    • (2010) Mol. Microbiol. , vol.75 , pp. 333-348
    • Christensen-Dalsgaard, M.1    Jágensen, M.G.2    Gerdes, K.3
  • 32
    • 0037428226 scopus 로고    scopus 로고
    • The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site
    • DOI 10.1016/S0092-8674(02)01248-5
    • Pedersen, K., Zavialov, A.V., Pavlov, M.Y., Elf, J., Gerdes, K. and Ehrenberg, M. (2003) The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site. Cell, 112, 131-140 (Pubitemid 36106425)
    • (2003) Cell , vol.112 , Issue.1 , pp. 131-140
    • Pedersen, K.1    Zavialov, A.V.2    Pavlov, M.Yu.3    Elf, J.4    Gerdes, K.5    Ehrenberg, M.6
  • 33
    • 67049100283 scopus 로고    scopus 로고
    • Mechanism of sequence-specific pausing of bacterial RNA polymerase
    • Kireeva, M.L. and Kashlev, M. (2009) Mechanism of sequence-specific pausing of bacterial RNA polymerase. Proc. Natl Acad. Sci. USA, 106, 8900-8905
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 8900-8905
    • Kireeva, M.L.1    Kashlev, M.2
  • 34
    • 0032113494 scopus 로고    scopus 로고
    • Crucial role of the RNA:DNA hybrid in the processivity of transcription
    • Sidorenkov, I., Komissarova, N. and Kashlev, M. (1998) Crucial role of the RNA:DNA hybrid in the processivity of transcription. Mol. Cell, 2, 55-64 (Pubitemid 128378966)
    • (1998) Molecular Cell , vol.2 , Issue.1 , pp. 55-64
    • Sidorenkov, I.1    Komissarova, N.2    Kashlev, M.3
  • 35
    • 0026749487 scopus 로고
    • Functional transcription elongation complexes from synthetic RNA-DNA bubble duplexes
    • Daube, S.S. and von Hippel, P.H. (1992) Functional transcription elongation complexes from synthetic RNA-DNA bubble duplexes. Science, 258, 1320-1324 (Pubitemid 23007781)
    • (1992) Science , vol.258 , Issue.5086 , pp. 1320-1324
    • Daube, S.S.1    Von Hippel, P.H.2
  • 36
    • 84856437051 scopus 로고    scopus 로고
    • Factor-independent transcription pausing caused by recognition of the RNA-DNA hybrid sequence
    • November 29 doi:10.1038/emboj.2011.432;epub ahead of print
    • Bochkareva, A., Yuzenkova, Y., Tadigotla, V.R. and Zenkin, N. (2011) Factor-independent transcription pausing caused by recognition of the RNA-DNA hybrid sequence. Embo. J, November 29 (doi:10.1038/emboj.2011.432;epub ahead of print)
    • (2011) Embo. J
    • Bochkareva, A.1    Yuzenkova, Y.2    Tadigotla, V.R.3    Zenkin, N.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.