메뉴 건너뛰기




Volumn 809, Issue , 2012, Pages 63-74

Probing endogenous RNA polymerase II pre-initiation complexes by electrophoretic mobility shift assay

Author keywords

Electrophoretic mobility shift assay; General transcription factor; Pre initiation complex; RNA polymerase II; TATA binding protein; TBP associated factor; TFIID

Indexed keywords

RNA POLYMERASE II; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR IID;

EID: 84555178838     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-376-9_4     Document Type: Article
Times cited : (5)

References (26)
  • 1
    • 0025739871 scopus 로고
    • RNA polymerase II
    • Young R. A. (1991) RNA polymerase II. Annu Rev Biochem 60 : 689-715
    • (1991) Annu Rev Biochem , vol.60 , pp. 689-715
    • Young, R.A.1
  • 2
    • 8144225486 scopus 로고    scopus 로고
    • MicroRNA genes are transcribed by RNA polymerase II
    • DOI 10.1038/sj.emboj.7600385
    • Lee Y., Kim M., Han J., Yeom K. H., Lee S., et al. (2004) MicroRNA genes are transcribed by RNA polymerase II. EMBO J 23 : 4051-60 (Pubitemid 39472426)
    • (2004) EMBO Journal , vol.23 , Issue.20 , pp. 4051-4060
    • Lee, Y.1    Kim, M.2    Han, J.3    Yeom, K.-H.4    Lee, S.5    Baek, S.H.6    Kim, V.N.7
  • 4
    • 33747881750 scopus 로고    scopus 로고
    • The general transcription machinery and general cofactors
    • Thomas M. C. Chiang C M. (2006) The general transcription machinery and general cofactors. Crit Rev Biochem Mol Biol 41 : 105-78
    • (2006) Crit Rev Biochem Mol Biol , vol.41 , pp. 105-78
    • Thomas, M.C.1    Chiang, C.M.2
  • 5
    • 0024977414 scopus 로고
    • Five intermediate complexes in transcription initiation by RNA polymerase II
    • Buratowski S. Hahn S, Guarente L., Sharp P. A. (1989) Five intermediate complexes in transcription initiation by RNA polymerase II. Cell 56 : 549-61
    • (1989) Cell , vol.56 , pp. 549-61
    • Buratowski, S.1    Hahn, S.2    Guarente, L.3    Sharp, P.A.4
  • 6
    • 0031193993 scopus 로고    scopus 로고
    • Functional analysis of TFIID-activator interaction by magnesium-agarose gel electrophoresis
    • DOI 10.1006/meth.1997.0474
    • Zerby D. Lieberman P M. (1997) Functional analysis of TFIID-activator interaction by magnesium-agarose gel electrophoresis. Methods 12 : 217-23 (Pubitemid 27356918)
    • (1997) Methods: A Companion to Methods in Enzymology , vol.12 , Issue.3 , pp. 217-223
    • Zerby, D.1    Lieberman, P.M.2
  • 7
    • 0026504544 scopus 로고
    • Diverse transcriptional functions of the multisubunit eukaryotic TFIID complex
    • Pugh B. F. Tjian R (1992) Diverse transcriptional functions of the multisubunit eukaryotic TFIID complex. J Biol Chem 267 : 679-82
    • (1992) J Biol Chem , vol.267 , pp. 679-82
    • Pugh, B.F.1    Tjian, R.2
  • 8
    • 77954759030 scopus 로고    scopus 로고
    • The human Mediator complex: A versatile, genome-wide regulator of transcription
    • Taatjes D. J. (2010) The human Mediator complex: a versatile genome-wide regulator of transcription Trends Biochem Sci 35 : 315-22
    • (2010) Trends Biochem Sci , vol.35 , pp. 315-22
    • Taatjes, D.J.1
  • 10
    • 70349813779 scopus 로고    scopus 로고
    • Distinct promoter dynamics of the basal transcription factor TBP across the yeast genome
    • van Werven F. J. van Teeffelen H A., Holstege F. C., Timmers H. T. (2009) Distinct promoter dynamics of the basal transcription factor TBP across the yeast genome. Nat Struct Mol Biol 16 : 1043-8
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 1043-8
    • Van Werven, F.J.1    Van Teeffelen, H.A.2    Holstege, F.C.3    Timmers, H.T.4
  • 11
    • 2642544592 scopus 로고    scopus 로고
    • Estrogen receptor-α directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter
    • DOI 10.1016/S0092-8674(03)00934-6
    • Metivier R., Penot G, Hubner M. R., Reid G., Brand H., Kos M., Gannon F. (2003) Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter. Cell 115 : 751-63 (Pubitemid 38030303)
    • (2003) Cell , vol.115 , Issue.6 , pp. 751-763
    • Metivier, R.1    Penot, G.2    Hubner, M.R.3    Reid, G.4    Brand, H.5    Kos, M.6    Gannon, F.7
  • 13
    • 0033032415 scopus 로고    scopus 로고
    • DNA bending and wrapping around RNA polymerase: A 'revolutionary' model describing transcriptional mechanisms
    • Coulombe B. rfpag Burton Z F. (1999) DNA bending and wrapping around RNA polymerase: a "revolutionary" model describing transcriptional mechanisms. Microbiol Mol Biol Rev 63 : 457-78 (Pubitemid 29264979)
    • (1999) Microbiology and Molecular Biology Reviews , vol.63 , Issue.2 , pp. 457-478
    • Coulombe, B.1    Burton, Z.F.2
  • 14
    • 0043269205 scopus 로고    scopus 로고
    • The RNA polymerase II core promoter
    • DOI 10.1146/annurev.biochem.72.121801.161520
    • Smale S. T. Kadonaga J T. (2003) The RNA polymerase II core promoter. Annu Rev Biochem 72 : 449-79 (Pubitemid 36930452)
    • (2003) Annual Review of Biochemistry , vol.72 , pp. 449-479
    • Smale, S.T.1    Kadonaga, J.T.2
  • 15
    • 77149174487 scopus 로고    scopus 로고
    • Regulation of gene expression via the core promoter and the basal transcriptional machinery
    • Juven-Gershon T. Kadonaga J T. (2010) Regulation of gene expression via the core promoter and the basal transcriptional machinery. Dev Biol 339 : 225-9
    • (2010) Dev Biol , vol.339 , pp. 225-9
    • Juven-Gershon, T.1    Kadonaga, J.T.2
  • 16
    • 0033540266 scopus 로고    scopus 로고
    • Regulation of gene expression by multiple forms of TFIID and other novel TAF(II)-containing complexes
    • DOI 10.1006/excr.1998.4294
    • Bell B. Tora L (1999) Regulation of gene expression by multiple forms of TFIID and other novel TAFII-containing complexes. Exp Cell Res 246 : 11-9 (Pubitemid 29393741)
    • (1999) Experimental Cell Research , vol.246 , Issue.1 , pp. 11-19
    • Bell, B.1    Tora, L.2
  • 17
    • 43849110454 scopus 로고    scopus 로고
    • Quantitative proteomics reveals regulation of dynamic components within TATA-binding protein (TBP) transcription complexes
    • DOI 10.1074/mcp.M700306-MCP200
    • Mousson F. Kolkman A, Pijnappel W. W., Timmers H. T., Heck A. J. (2008) Quantitative proteomics reveals regulation of dynamic components within TATA-binding protein (TBP) transcription complexes. Mol Cell Proteomics 7 : 845-52 (Pubitemid 351737086)
    • (2008) Molecular and Cellular Proteomics , vol.7 , Issue.5 , pp. 845-852
    • Mousson, F.1    Kolkman, A.2    Pijnappel, W.W.M.P.3    Timmers, H.Th.M.4    Heck, A.J.R.5
  • 18
    • 77954760923 scopus 로고    scopus 로고
    • The TATA box regulates TATA-binding protein (TBP) dynamics in vivo
    • Tora L. Timmers H T. (2010) The TATA box regulates TATA-binding protein (TBP) dynamics in vivo. Trends Biochem Sci 35 : 309-14
    • (2010) Trends Biochem Sci , vol.35 , pp. 309-14
    • Tora, L.1    Timmers, H.T.2
  • 19
    • 0021100690 scopus 로고
    • Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei
    • Dignam J. D. Lebovitz R M., Roeder R. G. (1983) Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res 11 : 1475-89
    • (1983) Nucleic Acids Res , vol.11 , pp. 1475-89
    • Dignam, J.D.1    Lebovitz, R.M.2    Roeder, R.G.3
  • 20
    • 0034785839 scopus 로고    scopus 로고
    • II80δ links apoptotic signaling pathways to transcription factor TFIID function
    • DOI 10.1016/S1097-2765(01)00325-2
    • Bell B. Scheer E, Tora L. (2001) Identifi cation of hTAF(II)80 delta links apoptotic signaling pathways to transcription factor TFIID function. Mol Cell 8: 591-600 (Pubitemid 32946936)
    • (2001) Molecular Cell , vol.8 , Issue.3 , pp. 591-600
    • Bell, B.1    Scheer, E.2    Tora, L.3
  • 21
    • 0028178522 scopus 로고
    • The N-terminal domain of the human TATA-binding protein plays a role in transcription from TATA-containing RNA polymerase II and III promoters
    • Lescure A, Lutz, Y., Eberhard, D., Jacq, X., Krol, A., Grummt, I., Davidson, I., Chambon, P., and Tora, L. (1994) The N-terminal domain of the human TATA-binding protein plays a role in transcription from TATA-containing RNA polymerase II and III promoters. EMBO J 13 : 1166-75
    • (1994) EMBO J , vol.13 , pp. 1166-75
    • Lescure, A.1    Lutz, Y.2    Eberhard, D.3    Jacq, X.4    Krol, A.5    Grummt, I.6    Davidson, I.7    Chambon, P.8    Tora, L.9
  • 22
    • 0029812470 scopus 로고    scopus 로고
    • HTAF(II)68, a novel RNA/ssDNA-binding protein with homology to the pro-oncoproteins TLS/FUS and EWS is associated with both TFIID and RNA polymerase II
    • Bertolotti A. Lutz Y, Heard D. J., Chambon P., Tora L. (1996) hTAF(II)68, a novel RNA/ssDNA-binding protein with homology to the pro- oncoproteins TLS/FUS and EWS is associated with both TFIID and RNA polymerase II. EMBO J 15 : 5022-31 (Pubitemid 26315812)
    • (1996) EMBO Journal , vol.15 , Issue.18 , pp. 5022-5031
    • Bertolotti, A.1    Lutz, Y.2    Heard, D.J.3    Chambon, P.4    Tora, L.5
  • 23
    • 0028827318 scopus 로고
    • Purifi cation Escherichia coli DNA polymerase i and Klenow fragment
    • Joyce C. M. rfpag Derbyshire V (1995) Purifi cation of Escherichia coli DNA polymerase I and Klenow fragment. Methods Enzymol 262 : 3-13
    • (1995) Methods Enzymol , vol.262 , pp. 3-13
    • Joyce, C.M.1    Derbyshire, V.2
  • 24
    • 0037418551 scopus 로고    scopus 로고
    • Interaction of DNA polymerase I (Klenow fragment) with the single-stranded template beyond the site of synthesis
    • DOI 10.1021/bi026566c
    • Turner R. M. Jr, Grindley N. D., Joyce C. M. (2003) Interaction of DNA polymerase I (Klenow fragment) with the single-stranded template beyond the site of synthesis. Biochemistry 42 : 2373-85 (Pubitemid 36255211)
    • (2003) Biochemistry , vol.42 , Issue.8 , pp. 2373-2385
    • Turner Jr., R.M.1    Grindley, N.D.F.2    Joyce, C.M.3
  • 25
    • 0026100191 scopus 로고
    • An in vitro transcription analysis of early responses of the human immunodeficiency virus type 1 long terminal repeat to different transcriptional activators
    • Li Y. C. Ross J, Scheppler J. A., Franza B. R., Jr. (1991) An in vitro transcription analysis of early responses of the human immunodeficiency virus type 1 long terminal repeat to different transcriptional activators. Mol Cell Biol 11 : 1883-93 (Pubitemid 21895556)
    • (1991) Molecular and Cellular Biology , vol.11 , Issue.4 , pp. 1883-1893
    • Li, Y.1    Ross, J.2    Scheppler, J.A.3    Franza Jr., B.R.4
  • 26
    • 0024420319 scopus 로고
    • An improved nuclear extract preparation method
    • DOI 10.1016/0735-0651(89)90016-2
    • Zerivitz K. Akusjarvi G (1989) An improved nuclear extract preparation method. Gene Anal Tech 6 : 101-9 (Pubitemid 19257735)
    • (1989) Gene Analysis Techniques , vol.6 , Issue.5 , pp. 101-109
    • Zerivitz, K.1    Akusjarvi, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.