-
1
-
-
0022132080
-
Extensive homology among the largest subunits of eukaryotic and prokaryotic RNA polymerases
-
L.A. Allison, M. Moyle, M. Shales, C.J. Ingles, Extensive homology among the largest subunits of eukaryotic and prokaryotic RNA polymerases, Cell 42 (1985) 599-610.
-
(1985)
Cell
, vol.42
, pp. 599-610
-
-
Allison, L.A.1
Moyle, M.2
Shales, M.3
Ingles, C.J.4
-
2
-
-
0021092718
-
Archaebacteria and eukaryotes possess DNA-dependent RNA polymerases of a common type
-
J. Huet, R. Schnabel, A. Sentenac, W. Zillig, Archaebacteria and eukaryotes possess DNA-dependent RNA polymerases of a common type, EMBO J. 2 (1983) 1291-1294.
-
(1983)
EMBO J
, vol.2
, pp. 1291-1294
-
-
Huet, J.1
Schnabel, R.2
Sentenac, A.3
Zillig, W.4
-
3
-
-
0028983409
-
Transcription in archaea: similarity to that in eucarya
-
D. Langer, J. Hain, P. Thuriaux, W. Zillig, Transcription in archaea: similarity to that in eucarya, Proc. Natl. Acad. Sci. U. S. A. 92 (1995) 5768-5772.
-
(1995)
Proc. Natl. Acad. Sci. U. S. A.
, vol.92
, pp. 5768-5772
-
-
Langer, D.1
Hain, J.2
Thuriaux, P.3
Zillig, W.4
-
4
-
-
0023645122
-
Purified RNA polymerase II recognizes specific termination sites during transcription in vitro
-
R.L. Dedrick, C.M. Kane, M.J. Chamberlin, Purified RNA polymerase II recognizes specific termination sites during transcription in vitro, J. Biol. Chem. 262 (1987) 9098-9108.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 9098-9108
-
-
Dedrick, R.L.1
Kane, C.M.2
Chamberlin, M.J.3
-
5
-
-
0032478549
-
RNA polymerase as a molecular motor
-
J. Gelles, R. Landick, RNA polymerase as a molecular motor, Cell 93 (1998) 13-16.
-
(1998)
Cell
, vol.93
, pp. 13-16
-
-
Gelles, J.1
Landick, R.2
-
6
-
-
0025976369
-
Transcript elongation and termination are competitive kinetic processes
-
P.H. von Hippel, T.D. Yager, Transcript elongation and termination are competitive kinetic processes, Proc. Natl. Acad. Sci. U. S. A. 88 (1991) 2307-2311.
-
(1991)
Proc. Natl. Acad. Sci. U. S. A.
, vol.88
, pp. 2307-2311
-
-
von Hippel, P.H.1
Yager, T.D.2
-
7
-
-
0026084789
-
A thermodynamic analysis of RNA transcript elongation and termination in Escherichia coli
-
T.D. Yager, P.H. von Hippel, A thermodynamic analysis of RNA transcript elongation and termination in Escherichia coli, Biochemistry 30 (1991) 1097-1118.
-
(1991)
Biochemistry
, vol.30
, pp. 1097-1118
-
-
Yager, T.D.1
von Hippel, P.H.2
-
8
-
-
33751235874
-
Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis
-
D. Wang, D.A. Bushnell, K.D. Westover, C.D. Kaplan, R.D. Kornberg, Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis, Cell 127 (2006) 941-954.
-
(2006)
Cell
, vol.127
, pp. 941-954
-
-
Wang, D.1
Bushnell, D.A.2
Westover, K.D.3
Kaplan, C.D.4
Kornberg, R.D.5
-
9
-
-
0035827332
-
Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution
-
A.L. Gnatt, P. Cramer, J. Fu, D.A. Bushnell, R.D. Kornberg, Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution, Science 292 (2001) 1876-1882.
-
(2001)
Science
, vol.292
, pp. 1876-1882
-
-
Gnatt, A.L.1
Cramer, P.2
Fu, J.3
Bushnell, D.A.4
Kornberg, R.D.5
-
10
-
-
0033578701
-
Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution
-
G. Zhang, E.A. Campbell, L. Minakhin, C. Richter, K. Severinov, S.A. Darst, Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution, Cell 98 (1999) 811-824.
-
(1999)
Cell
, vol.98
, pp. 811-824
-
-
Zhang, G.1
Campbell, E.A.2
Minakhin, L.3
Richter, C.4
Severinov, K.5
Darst, S.A.6
-
11
-
-
12944324227
-
A ratchet mechanism of transcription elongation and its control
-
G. Bar-Nahum, V. Epshtein, A.E. Ruckenstein, R. Rafikov, A. Mustaev, E. Nudler, A ratchet mechanism of transcription elongation and its control, Cell 120 (2005) 183-193.
-
(2005)
Cell
, vol.120
, pp. 183-193
-
-
Bar-Nahum, G.1
Epshtein, V.2
Ruckenstein, A.E.3
Rafikov, R.4
Mustaev, A.5
Nudler, E.6
-
12
-
-
0036753435
-
Swing-gatemodel of nucleotide entry into the RNA polymerase active center
-
V. Epshtein, A.Mustaev, V.Markovtsov, O. Bereshchenko, V. Nikiforov, A. Goldfarb, Swing-gatemodel of nucleotide entry into the RNA polymerase active center, Mol. Cell 10 (2002) 623-634.
-
(2002)
Mol. Cell
, vol.10
, pp. 623-634
-
-
Epshtein, V.1
Mustaev, A.2
Markovtsov, V.3
Bereshchenko, O.4
Nikiforov, V.5
Goldfarb, A.6
-
13
-
-
49449102926
-
Structural basis of transcription inhibition by alphaamanitin and implications for RNA polymerase II translocation
-
F. Brueckner, P. Cramer, Structural basis of transcription inhibition by alphaamanitin and implications for RNA polymerase II translocation, Nat. Struct. Mol. Biol. 15 (2008) 811-818.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 811-818
-
-
Brueckner, F.1
Cramer, P.2
-
14
-
-
57249108333
-
Bridge helix and trigger loop perturbations generate superactive RNA polymerases
-
L. Tan, S. Wiesler, D. Trzaska, H.C. Carney, R.O. Weinzierl, Bridge helix and trigger loop perturbations generate superactive RNA polymerases, J. Biol. 7 (2008) 40.
-
(2008)
J. Biol.
, vol.7
, pp. 40
-
-
Tan, L.1
Wiesler, S.2
Trzaska, D.3
Carney, H.C.4
Weinzierl, R.O.5
-
15
-
-
8344234112
-
Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center
-
K.D. Westover, D.A. Bushnell, R.D. Kornberg, Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center, Cell 119 (2004) 481-489.
-
(2004)
Cell
, vol.119
, pp. 481-489
-
-
Westover, K.D.1
Bushnell, D.A.2
Kornberg, R.D.3
-
16
-
-
34447513771
-
Structural basis for substrate loading in bacterial RNA polymerase
-
D.G. Vassylyev, M.N. Vassylyeva, J. Zhang, M. Palangat, I. Artsimovitch, R. Landick, Structural basis for substrate loading in bacterial RNA polymerase, Nature 448 (2007) 163-168.
-
(2007)
Nature
, vol.448
, pp. 163-168
-
-
Vassylyev, D.G.1
Vassylyeva, M.N.2
Zhang, J.3
Palangat, M.4
Artsimovitch, I.5
Landick, R.6
-
17
-
-
28544432440
-
Direct observation of base-pair stepping by RNA polymerase
-
E.A. Abbondanzieri, W.J. Greenleaf, J.W. Shaevitz, R. Landick, S.M. Block, Direct observation of base-pair stepping by RNA polymerase, Nature 438 (2005) 460-465.
-
(2005)
Nature
, vol.438
, pp. 460-465
-
-
Abbondanzieri, E.A.1
Greenleaf, W.J.2
Shaevitz, J.W.3
Landick, R.4
Block, S.M.5
-
18
-
-
7444253928
-
Sequence-dependent kinetic model for transcription elongation by RNA polymerase
-
L. Bai, A. Shundrovsky, M.D. Wang, Sequence-dependent kinetic model for transcription elongation by RNA polymerase, J. Mol. Biol. 344 (2004) 335-349.
-
(2004)
J. Mol. Biol.
, vol.344
, pp. 335-349
-
-
Bai, L.1
Shundrovsky, A.2
Wang, M.D.3
-
19
-
-
33846958387
-
Mechanochemical kinetics of transcription elongation
-
L. Bai, R.M. Fulbright, M.D. Wang, Mechanochemical kinetics of transcription elongation, Phys. Rev. Lett. 98 (2007) 068103.
-
(2007)
Phys. Rev. Lett.
, vol.98
, pp. 068103
-
-
Bai, L.1
Fulbright, R.M.2
Wang, M.D.3
-
20
-
-
33645097171
-
Translocation by T7 RNA polymerase: a sensitively poised Brownian ratchet
-
Q. Guo, R. Sousa, Translocation by T7 RNA polymerase: a sensitively poised Brownian ratchet, J. Mol. Biol. 358 (2006) 241-254.
-
(2006)
J. Mol. Biol.
, vol.358
, pp. 241-254
-
-
Guo, Q.1
Sousa, R.2
-
21
-
-
33645222759
-
Thermodynamic and kinetic modeling of transcriptional pausing
-
V.R. Tadigotla, O. Maoileidigh, A.M. Sengupta, V. Epshtein, R.H. Ebright, E. Nudler, A.E. Ruckenstein, Thermodynamic and kinetic modeling of transcriptional pausing, Proc. Natl. Acad. Sci. U. S. A. 103 (2006) 4439-4444.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 4439-4444
-
-
Tadigotla, V.R.1
Maoileidigh, O.2
Sengupta, A.M.3
Epshtein, V.4
Ebright, R.H.5
Nudler, E.6
Ruckenstein, A.E.7
-
22
-
-
0026728955
-
The single-nucleotide addition cycle in transcription: a biophysical and biochemical perspective
-
D.A. Erie, T.D. Yager, P.H. von Hippel, The single-nucleotide addition cycle in transcription: a biophysical and biochemical perspective, Annu. Rev. Biophys. Biomol. Struct. 21 (1992) 379-415.
-
(1992)
Annu. Rev. Biophys. Biomol. Struct.
, vol.21
, pp. 379-415
-
-
Erie, D.A.1
Yager, T.D.2
von Hippel, P.H.3
-
23
-
-
0035827346
-
Structural basis of transcription: RNA polymerase II at 2.8 Angstrom resolution
-
P. Cramer, D.A. Bushnell, R.D. Kornberg, Structural basis of transcription: RNA polymerase II at 2.8 Angstrom resolution, Science 292 (2001) 1863-1876.
-
(2001)
Science
, vol.292
, pp. 1863-1876
-
-
Cramer, P.1
Bushnell, D.A.2
Kornberg, R.D.3
-
24
-
-
0037071844
-
Crystal structure of a bacterial RNA polymerase holoenzymeat 2.6 A resolution
-
D.G. Vassylyev, S. Sekine, O. Laptenko, J. Lee, M.N. Vassylyeva, S. Borukhov, S. Yokoyama, Crystal structure of a bacterial RNA polymerase holoenzymeat 2.6 A resolution, Nature 417 (2002) 712-719.
-
(2002)
Nature
, vol.417
, pp. 712-719
-
-
Vassylyev, D.G.1
Sekine, S.2
Laptenko, O.3
Lee, J.4
Vassylyeva, M.N.5
Borukhov, S.6
Yokoyama, S.7
-
25
-
-
34447499995
-
Structural basis for transcription elongation by bacterial RNA polymerase
-
D.G. Vassylyev, M.N. Vassylyeva, A. Perederina, T.H. Tahirov, I. Artsimovitch, Structural basis for transcription elongation by bacterial RNA polymerase, Nature 448 (2007) 157-162.
-
(2007)
Nature
, vol.448
, pp. 157-162
-
-
Vassylyev, D.G.1
Vassylyeva, M.N.2
Perederina, A.3
Tahirov, T.H.4
Artsimovitch, I.5
-
26
-
-
1342313235
-
The structural mechanism of translocation and helicase activity in T7 RNA polymerase
-
Y.W. Yin, T.A. Steitz, The structural mechanism of translocation and helicase activity in T7 RNA polymerase, Cell 116 (2004) 393-404.
-
(2004)
Cell
, vol.116
, pp. 393-404
-
-
Yin, Y.W.1
Steitz, T.A.2
-
27
-
-
44449103640
-
The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin
-
C.D. Kaplan, K.M. Larsson, R.D. Kornberg, The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin, Mol. Cell 30 (2008) 547-556.
-
(2008)
Mol. Cell
, vol.30
, pp. 547-556
-
-
Kaplan, C.D.1
Larsson, K.M.2
Kornberg, R.D.3
-
28
-
-
44449094019
-
Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation
-
M.L. Kireeva, Y.A. Nedialkov, G.H. Cremona, Y.A. Purtov, L. Lubkowska, F. Malagon, Z.F. Burton, J.N. Strathern, M. Kashlev, Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation, Mol. Cell 30 (2008) 557-566.
-
(2008)
Mol. Cell
, vol.30
, pp. 557-566
-
-
Kireeva, M.L.1
Nedialkov, Y.A.2
Cremona, G.H.3
Purtov, Y.A.4
Lubkowska, L.5
Malagon, F.6
Burton, Z.F.7
Strathern, J.N.8
Kashlev, M.9
-
29
-
-
18944368782
-
Dynamic error correction and regulation of downstream bubble opening by human RNA polymerase II
-
X.Q. Gong, C. Zhang, M. Feig, Z.F. Burton, Dynamic error correction and regulation of downstream bubble opening by human RNA polymerase II, Mol. Cell 18 (2005) 461-470.
-
(2005)
Mol. Cell
, vol.18
, pp. 461-470
-
-
Gong, X.Q.1
Zhang, C.2
Feig, M.3
Burton, Z.F.4
-
30
-
-
67849124180
-
Millisecond phase kinetic analysis of elongation catalyzed by human, yeast, and Escherichia coli RNA polymerase
-
M. Kireeva, Y.A. Nedialkov, X.Q. Gong, C. Zhang, Y. Xiong, W. Moon, Z.F. Burton, M. Kashlev, Millisecond phase kinetic analysis of elongation catalyzed by human, yeast, and Escherichia coli RNA polymerase, Methods 48 (2009) 333-345.
-
(2009)
Methods
, vol.48
, pp. 333-345
-
-
Kireeva, M.1
Nedialkov, Y.A.2
Gong, X.Q.3
Zhang, C.4
Xiong, Y.5
Moon, W.6
Burton, Z.F.7
Kashlev, M.8
-
31
-
-
37549044288
-
A tunable ratchet driving human RNA polymerase II translocation adjusted by accurately templated nucleoside triphosphates loaded at downstreamsites and by elongation factors
-
Y. Xiong, Z.F. Burton, A tunable ratchet driving human RNA polymerase II translocation adjusted by accurately templated nucleoside triphosphates loaded at downstreamsites and by elongation factors, J. Biol. Chem. 282 (2007) 36582-36592.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 36582-36592
-
-
Xiong, Y.1
Burton, Z.F.2
-
32
-
-
4444228491
-
Transcription factors IIF and IIS and nucleoside triphosphate substrates as dynamic probes of the human RNA polymerase II mechanism
-
C. Zhang, Z.F. Burton, Transcription factors IIF and IIS and nucleoside triphosphate substrates as dynamic probes of the human RNA polymerase II mechanism, J. Mol. Biol. 342 (2004) 1085-1099.
-
(2004)
J. Mol. Biol.
, vol.342
, pp. 1085-1099
-
-
Zhang, C.1
Burton, Z.F.2
-
33
-
-
48749102174
-
Rapid kinetic analysis of transcription elongation by Escherichia coli RNA polymerase
-
R.S. Johnson, M. Strausbauch, R. Cooper, J.K. Register, Rapid kinetic analysis of transcription elongation by Escherichia coli RNA polymerase, J. Mol. Biol. 381 (2008) 1106-1113.
-
(2008)
J. Mol. Biol.
, vol.381
, pp. 1106-1113
-
-
Johnson, R.S.1
Strausbauch, M.2
Cooper, R.3
Register, J.K.4
-
34
-
-
0026033193
-
Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant
-
S.S. Patel, I. Wong, K.A. Johnson, Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant, Biochemistry 30 (1991) 511-525.
-
(1991)
Biochemistry
, vol.30
, pp. 511-525
-
-
Patel, S.S.1
Wong, I.2
Johnson, K.A.3
-
35
-
-
2442584664
-
Poliovirus RNA-dependent RNA polymerase (3Dpol): pre-steady-state kinetic analysis of ribonucleotide incorporation in the presence of Mg2+
-
J.J. Arnold, C.E. Cameron, Poliovirus RNA-dependent RNA polymerase (3Dpol): pre-steady-state kinetic analysis of ribonucleotide incorporation in the presence of Mg2+, Biochemistry 43 (2004) 5126-5137.
-
(2004)
Biochemistry
, vol.43
, pp. 5126-5137
-
-
Arnold, J.J.1
Cameron, C.E.2
-
36
-
-
33845967859
-
Transient state kinetics of transcription elongation by T7 RNA polymerase
-
V.S. Anand, S.S. Patel, Transient state kinetics of transcription elongation by T7 RNA polymerase, J. Biol. Chem. 281 (2006) 35677-35685.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 35677-35685
-
-
Anand, V.S.1
Patel, S.S.2
-
37
-
-
34047257841
-
The pyrophosphate analogue foscarnet traps the pre-translocational state of HIV-1 reverse transcriptase in a Brownian ratchet model of polymerase translocation
-
B. Marchand, E.P. Tchesnokov, M. Gotte, The pyrophosphate analogue foscarnet traps the pre-translocational state of HIV-1 reverse transcriptase in a Brownian ratchet model of polymerase translocation, J. Biol. Chem. 282 (2007) 3337-3346.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 3337-3346
-
-
Marchand, B.1
Tchesnokov, E.P.2
Gotte, M.3
-
38
-
-
0031059249
-
Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded
-
N. Komissarova, M. Kashlev, Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded, Proc. Natl. Acad. Sci. U. S. A. 94 (1997) 1755-1760.
-
(1997)
Proc. Natl. Acad. Sci. U. S. A.
, vol.94
, pp. 1755-1760
-
-
Komissarova, N.1
Kashlev, M.2
-
39
-
-
0030584091
-
Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism
-
T.C. Reeder, D.K. Hawley, Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism, Cell 87 (1996) 767-777.
-
(1996)
Cell
, vol.87
, pp. 767-777
-
-
Reeder, T.C.1
Hawley, D.K.2
-
40
-
-
0030950638
-
RNA polymerase switches between inactivated and activated states By translocating back and forth along the DNA and the RNA
-
N. Komissarova, M. Kashlev, RNA polymerase switches between inactivated and activated states By translocating back and forth along the DNA and the RNA, J. Biol. Chem. 272 (1997) 15329-15338.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 15329-15338
-
-
Komissarova, N.1
Kashlev, M.2
-
41
-
-
0027930269
-
GreA-induced transcript cleavage in transcription complexes containing Escherichia coli RNA polymerase is controlled by multiple factors, including nascent transcript location and structure
-
G.H. Feng, D.N. Lee, D. Wang, C.L. Chan, R. Landick, GreA-induced transcript cleavage in transcription complexes containing Escherichia coli RNA polymerase is controlled by multiple factors, including nascent transcript location and structure, J. Biol. Chem. 269 (1994) 22282-22294.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 22282-22294
-
-
Feng, G.H.1
Lee, D.N.2
Wang, D.3
Chan, C.L.4
Landick, R.5
-
42
-
-
33846980409
-
CPD damage recognition by transcribing RNA polymerase II
-
F. Brueckner, U. Hennecke, T. Carell, P. Cramer, CPD damage recognition by transcribing RNA polymerase II, Science 315 (2007) 859-862.
-
(2007)
Science
, vol.315
, pp. 859-862
-
-
Brueckner, F.1
Hennecke, U.2
Carell, T.3
Cramer, P.4
-
43
-
-
10944232674
-
Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS
-
H. Kettenberger, K.J. Armache, P. Cramer, Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS, Mol. Cell 16 (2004) 955-965.
-
(2004)
Mol. Cell
, vol.16
, pp. 955-965
-
-
Kettenberger, H.1
Armache, K.J.2
Cramer, P.3
-
44
-
-
1142310578
-
Structural basis of transcription: separation of RNA fromDNAby RNA polymerase II
-
K.D. Westover, D.A. Bushnell, R.D. Kornberg, Structural basis of transcription: separation of RNA fromDNAby RNA polymerase II, Science 303 (2004) 1014-1016.
-
(2004)
Science
, vol.303
, pp. 1014-1016
-
-
Westover, K.D.1
Bushnell, D.A.2
Kornberg, R.D.3
-
45
-
-
0034737593
-
Single-molecule study of transcriptional pausing and arrest by E. coli RNA polymerase
-
R.J. Davenport, G.J. Wuite, R. Landick, C. Bustamante, Single-molecule study of transcriptional pausing and arrest by E. coli RNA polymerase, Science 287 (2000) 2497-2500.
-
(2000)
Science
, vol.287
, pp. 2497-2500
-
-
Davenport, R.J.1
Wuite, G.J.2
Landick, R.3
Bustamante, C.4
-
46
-
-
0032582494
-
Force and velocity measured for single molecules of RNA polymerase
-
M.D. Wang, M.J. Schnitzer, H. Yin, R. Landick, J. Gelles, S.M. Block, Force and velocity measured for single molecules of RNA polymerase, Science 282 (1998) 902-907.
-
(1998)
Science
, vol.282
, pp. 902-907
-
-
Wang, M.D.1
Schnitzer, M.J.2
Yin, H.3
Landick, R.4
Gelles, J.5
Block, S.M.6
-
47
-
-
0029416931
-
Transcription against an applied force
-
H. Yin, M.D. Wang, K. Svoboda, R. Landick, S.M. Block, J. Gelles, Transcription against an applied force, Science 270 (1995) 1653-1657.
-
(1995)
Science
, vol.270
, pp. 1653-1657
-
-
Yin, H.1
Wang, M.D.2
Svoboda, K.3
Landick, R.4
Block, S.M.5
Gelles, J.6
-
49
-
-
10044287423
-
A single-molecule technique to study sequence-dependent transcription pausing
-
A. Shundrovsky, T.J. Santangelo, J.W. Roberts, M.D. Wang, A single-molecule technique to study sequence-dependent transcription pausing, Biophys. J. 87 (2004) 3945-3953.
-
(2004)
Biophys. J.
, vol.87
, pp. 3945-3953
-
-
Shundrovsky, A.1
Santangelo, T.J.2
Roberts, J.W.3
Wang, M.D.4
-
50
-
-
34147206187
-
Backtracking determines the force sensitivity of RNAP II in a factordependent manner
-
E.A. Galburt, S.W. Grill, A. Wiedmann, L. Lubkowska, J. Choy, E. Nogales, M. Kashlev, C. Bustamante, Backtracking determines the force sensitivity of RNAP II in a factordependent manner, Nature 446 (2007) 820-823.
-
(2007)
Nature
, vol.446
, pp. 820-823
-
-
Galburt, E.A.1
Grill, S.W.2
Wiedmann, A.3
Lubkowska, L.4
Choy, J.5
Nogales, E.6
Kashlev, M.7
Bustamante, C.8
-
51
-
-
50149118845
-
Thermal probing of E. coli RNA polymerase off-pathway mechanisms
-
Y.X. Mejia, H. Mao, N.R. Forde, C. Bustamante, Thermal probing of E. coli RNA polymerase off-pathway mechanisms, J. Mol. Biol. 382 (2008) 628-637.
-
(2008)
J. Mol. Biol.
, vol.382
, pp. 628-637
-
-
Mejia, Y.X.1
Mao, H.2
Forde, N.R.3
Bustamante, C.4
-
52
-
-
0028947453
-
Single-molecule kinetic studies on DNA transcription and transcriptional regulation
-
J. Gelles, H. Yin, L. Finzi, O.K. Wong, R. Landick, Single-molecule kinetic studies on DNA transcription and transcriptional regulation, Biophys. J. 68 (1995) 73S.
-
(1995)
Biophys. J.
, vol.68
-
-
Gelles, J.1
Yin, H.2
Finzi, L.3
Wong, O.K.4
Landick, R.5
-
53
-
-
33744981369
-
Sequence-resolved detection of pausing by single RNA polymerase molecules
-
K.M. Herbert, P.A. La, B.J. Wong, R.A. Mooney, K.C. Neuman, R. Landick, S.M. Block, Sequence-resolved detection of pausing by single RNA polymerase molecules, Cell 125 (2006) 1083-1094.
-
(2006)
Cell
, vol.125
, pp. 1083-1094
-
-
Herbert, K.M.1
La, P.A.2
Wong, B.J.3
Mooney, R.A.4
Neuman, K.C.5
Landick, R.6
Block, S.M.7
-
54
-
-
0345047725
-
Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking
-
K.C. Neuman, E.A. Abbondanzieri, R. Landick, J. Gelles, S.M. Block, Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking, Cell 115 (2003) 437-447.
-
(2003)
Cell
, vol.115
, pp. 437-447
-
-
Neuman, K.C.1
Abbondanzieri, E.A.2
Landick, R.3
Gelles, J.4
Block, S.M.5
-
56
-
-
66349138227
-
Structural basis of transcription: backtracked RNA polymerase II at 3.4 Angstrom resolution
-
D. Wang, D.A. Bushnell, X. Huang, K.D. Westover, M. Levitt, R.D. Kornberg, Structural basis of transcription: backtracked RNA polymerase II at 3.4 Angstrom resolution, Science 324 (2009) 1203-1206.
-
(2009)
Science
, vol.324
, pp. 1203-1206
-
-
Wang, D.1
Bushnell, D.A.2
Huang, X.3
Westover, K.D.4
Levitt, M.5
Kornberg, R.D.6
-
57
-
-
0034691146
-
Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals
-
I. Artsimovitch, R. Landick, Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals, Proc. Natl. Acad. Sci. U. S. A. 97 (2000) 7090-7095.
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 7090-7095
-
-
Artsimovitch, I.1
Landick, R.2
-
58
-
-
0035838977
-
Roles of RNA:DNA hybrid stability, RNA structure, and active site conformation in pausing by human RNA polymerase II
-
M. Palangat, R. Landick, Roles of RNA:DNA hybrid stability, RNA structure, and active site conformation in pausing by human RNA polymerase II, J. Mol. Biol. 311 (2001) 265-282.
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 265-282
-
-
Palangat, M.1
Landick, R.2
-
59
-
-
3042709472
-
Characterization of a novel RNA polymerase II arrest site which lacks a weak 3′ RNA-DNA hybrid
-
P.J. Hawryluk, A. Ujvari, D.S. Luse, Characterization of a novel RNA polymerase II arrest site which lacks a weak 3' RNA-DNA hybrid, Nucleic Acids Res. 32 (2004) 1904-1916.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1904-1916
-
-
Hawryluk, P.J.1
Ujvari, A.2
Luse, D.S.3
-
60
-
-
0027374650
-
Dissection of the his leader pause site by base substitution reveals a multipartite signal that includes a pause RNA hairpin
-
C.L. Chan, R. Landick, Dissection of the his leader pause site by base substitution reveals a multipartite signal that includes a pause RNA hairpin, J. Mol. Biol. 233 (1993) 25-42.
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 25-42
-
-
Chan, C.L.1
Landick, R.2
-
61
-
-
0024408799
-
The Salmonella typhimuriumhis operonleader regioncontains an RNA hairpin-dependent transcription pause site.Mechanistic implications of the effect on pausing of altered RNA hairpins
-
C.L. Chan,R. Landick, The Salmonella typhimuriumhis operonleader regioncontains an RNA hairpin-dependent transcription pause site.Mechanistic implications of the effect on pausing of altered RNA hairpins, J. Biol. Chem. 264 (1989) 20796-20804.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 20796-20804
-
-
Chan, C.L.1
Landick, R.2
-
62
-
-
0344413496
-
The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination
-
I. Toulokhonov, R. Landick, The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination, Mol. Cell 12 (2003) 1125-1136.
-
(2003)
Mol. Cell
, vol.12
, pp. 1125-1136
-
-
Toulokhonov, I.1
Landick, R.2
-
63
-
-
34547097808
-
Direct versus limited-step reconstitution reveals key features of an RNA hairpin-stabilized paused transcription complex
-
S. Kyzer, K.S. Ha, R. Landick, M. Palangat, Direct versus limited-step reconstitution reveals key features of an RNA hairpin-stabilized paused transcription complex, J. Biol. Chem. 282 (2007) 19020-19028.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 19020-19028
-
-
Kyzer, S.1
Ha, K.S.2
Landick, R.3
Palangat, M.4
-
64
-
-
0035957687
-
Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins
-
I. Toulokhonov, I. Artsimovitch, R. Landick, Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins, Science 292 (2001) 730-733.
-
(2001)
Science
, vol.292
, pp. 730-733
-
-
Toulokhonov, I.1
Artsimovitch, I.2
Landick, R.3
-
65
-
-
34547204502
-
A central role of the RNA polymerase trigger loop in active-site rearrangement during transcriptional pausing
-
I. Toulokhonov, J. Zhang, M. Palangat, R. Landick, A central role of the RNA polymerase trigger loop in active-site rearrangement during transcriptional pausing, Mol. Cell 27 (2007) 406-419.
-
(2007)
Mol. Cell
, vol.27
, pp. 406-419
-
-
Toulokhonov, I.1
Zhang, J.2
Palangat, M.3
Landick, R.4
-
66
-
-
33846914726
-
The regulatory roles and mechanism of transcriptional pausing
-
R. Landick, The regulatory roles and mechanism of transcriptional pausing, Biochem. Soc. Trans. 34 (2006) 1062-1066.
-
(2006)
Biochem. Soc. Trans.
, vol.34
, pp. 1062-1066
-
-
Landick, R.1
-
67
-
-
0031561795
-
A model for the mechanism of polymerase translocation
-
R. Guajardo, R. Sousa, A model for the mechanism of polymerase translocation, J. Mol. Biol. 265 (1997) 8-19.
-
(1997)
J. Mol. Biol.
, vol.265
, pp. 8-19
-
-
Guajardo, R.1
Sousa, R.2
-
68
-
-
0034051171
-
The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex
-
M.L. Kireeva, N. Komissarova, D.S. Waugh, M. Kashlev, The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex, J. Biol. Chem. 275 (2000) 6530-6536.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 6530-6536
-
-
Kireeva, M.L.1
Komissarova, N.2
Waugh, D.S.3
Kashlev, M.4
-
69
-
-
0032113494
-
Crucial role of the RNA:DNA hybrid in the processivity of transcription
-
I. Sidorenkov, N. Komissarova, M. Kashlev, Crucial role of the RNA:DNA hybrid in the processivity of transcription, Mol. Cell 2 (1998) 55-64.
-
(1998)
Mol. Cell
, vol.2
, pp. 55-64
-
-
Sidorenkov, I.1
Komissarova, N.2
Kashlev, M.3
-
70
-
-
67049100283
-
Mechanism of sequence-specific pausing of bacterial RNA polymerase
-
M.L. Kireeva, M. Kashlev, Mechanism of sequence-specific pausing of bacterial RNA polymerase, Proc. Natl. Acad. Sci. U. S. A. 106 (2009) 8900-8905.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 8900-8905
-
-
Kireeva, M.L.1
Kashlev, M.2
-
71
-
-
23944521364
-
Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation
-
S. Tuske, S.G. Sarafianos,X.Wang, B.Hudson, E. Sineva, J.Mukhopadhyay, J.J.Birktoft, O. Leroy, S. Ismail, A.D. Clark Jr., C. Dharia, A. Napoli, O. Laptenko, J. Lee, S. Borukhov, R.H. Ebright, E. Arnold, Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation, Cell 122 (2005) 541-552.
-
(2005)
Cell
, vol.122
, pp. 541-552
-
-
Tuske, S.1
Sarafianos, S.G.2
Wang, X.3
Hudson, B.4
Sineva, E.5
Mukhopadhyay, J.6
Birktoft, J.J.7
Leroy, O.8
Ismail, S.9
Clark Jr., A.D.10
Dharia, C.11
Napoli, A.12
Laptenko, O.13
Lee, J.14
Borukhov, S.15
Ebright, R.H.16
Arnold, E.17
-
72
-
-
0042316944
-
Site-specific footprinting reveals differences in the translocation status of HIV-1 reverse transcriptase. Implications for polymerase translocation and drug resistance
-
B. Marchand, M. Gotte, Site-specific footprinting reveals differences in the translocation status of HIV-1 reverse transcriptase. Implications for polymerase translocation and drug resistance, J. Biol. Chem. 278 (2003) 35362-35372.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 35362-35372
-
-
Marchand, B.1
Gotte, M.2
-
73
-
-
33748571487
-
Elongation complexes of Thermus thermophilus RNA polymerase that possess distinct translocation conformations
-
E. Kashkina, M. Anikin, T.H. Tahirov, S.N. Kochetkov, D.G. Vassylyev, D. Temiakov, Elongation complexes of Thermus thermophilus RNA polymerase that possess distinct translocation conformations, Nucleic Acids Res. 34 (2006) 4036-4045.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4036-4045
-
-
Kashkina, E.1
Anikin, M.2
Tahirov, T.H.3
Kochetkov, S.N.4
Vassylyev, D.G.5
Temiakov, D.6
-
75
-
-
0035958552
-
Allosteric binding of nucleoside triphosphates to RNA polymerase regulates transcription elongation
-
J.E. Foster, S.F. Holmes, D.A. Erie, Allosteric binding of nucleoside triphosphates to RNA polymerase regulates transcription elongation, Cell 106 (2001) 243-252.
-
(2001)
Cell
, vol.106
, pp. 243-252
-
-
Foster, J.E.1
Holmes, S.F.2
Erie, D.A.3
-
76
-
-
3042595545
-
Alpha-amanitin blocks translocation by human RNA polymerase II
-
X.Q. Gong, Y.A. Nedialkov, Z.F. Burton, Alpha-amanitin blocks translocation by human RNA polymerase II, J. Biol. Chem. 279 (2004) 27422-27427.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 27422-27427
-
-
Gong, X.Q.1
Nedialkov, Y.A.2
Burton, Z.F.3
-
77
-
-
0041315524
-
Downstream DNA sequence effects on transcription elongation. Allosteric binding of nucleoside triphosphates facilitates translocation via a ratchet motion
-
S.F. Holmes, D.A. Erie, Downstream DNA sequence effects on transcription elongation. Allosteric binding of nucleoside triphosphates facilitates translocation via a ratchet motion, J. Biol. Chem. 278 (2003) 35597-35608.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 35597-35608
-
-
Holmes, S.F.1
Erie, D.A.2
-
78
-
-
0037705379
-
NTP-driven translocation by human RNA polymerase II
-
Y.A. Nedialkov, X.Q. Gong, S.L. Hovde, Y. Yamaguchi, H. Handa, J.H. Geiger, H. Yan, Z.F. Burton, NTP-driven translocation by human RNA polymerase II, J. Biol. Chem. 278 (2003) 18303-18312.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 18303-18312
-
-
Nedialkov, Y.A.1
Gong, X.Q.2
Hovde, S.L.3
Yamaguchi, Y.4
Handa, H.5
Geiger, J.H.6
Yan, H.7
Burton, Z.F.8
-
79
-
-
67849124180
-
Millisecond phase kinetic analysis of elongation catalyzed by human, yeast, and Escherichia coli RNA polymerase
-
M. Kireeva, Y.A. Nedialkov, X.Q. Gong, C. Zhang, Y. Xiong, W. Moon, Z.F. Burton, M. Kashlev, Millisecond phase kinetic analysis of elongation catalyzed by human, yeast, and Escherichia coli RNA polymerase, Methods 48 (2009) 333-345.
-
(2009)
Methods
, vol.48
, pp. 333-345
-
-
Kireeva, M.1
Nedialkov, Y.A.2
Gong, X.Q.3
Zhang, C.4
Xiong, Y.5
Moon, W.6
Burton, Z.F.7
Kashlev, M.8
-
80
-
-
27744534862
-
NTP-driven translocation and regulation of downstream template opening by multi-subunit RNA polymerases
-
Z.F. Burton, M. Feig, X.Q. Gong, C. Zhang, Y.A. Nedialkov, Y. Xiong, NTP-driven translocation and regulation of downstream template opening by multi-subunit RNA polymerases, Biochem. Cell Biol. 83 (2005) 486-496.
-
(2005)
Biochem. Cell Biol.
, vol.83
, pp. 486-496
-
-
Burton, Z.F.1
Feig, M.2
Gong, X.Q.3
Zhang, C.4
Nedialkov, Y.A.5
Xiong, Y.6
-
81
-
-
0346749472
-
Combinatorial control of human RNA polymerase II (RNAP II) pausing and transcript cleavage by transcription factor IIF, hepatitis delta antigen, and stimulatory factor II
-
C. Zhang, H. Yan, Z.F. Burton, Combinatorial control of human RNA polymerase II (RNAP II) pausing and transcript cleavage by transcription factor IIF, hepatitis delta antigen, and stimulatory factor II, J. Biol. Chem. 278 (2003) 50101-50111.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 50101-50111
-
-
Zhang, C.1
Yan, H.2
Burton, Z.F.3
-
82
-
-
17644384843
-
Human RNA polymerase II elongation in slow motion: role of the TFIIF RAP74 alpha1 helix in nucleoside triphosphate-driven translocation
-
C. Zhang, K.L. Zobeck, Z.F. Burton, Human RNA polymerase II elongation in slow motion: role of the TFIIF RAP74 alpha1 helix in nucleoside triphosphate-driven translocation, Mol. Cell Biol. 25 (2005) 3583-3595.
-
(2005)
Mol. Cell Biol.
, vol.25
, pp. 3583-3595
-
-
Zhang, C.1
Zobeck, K.L.2
Burton, Z.F.3
-
83
-
-
10644237908
-
Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center
-
N.N. Batada, K.D. Westover, D.A. Bushnell, M. Levitt, R.D. Kornberg, Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center, Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 17361-17364.
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 17361-17364
-
-
Batada, N.N.1
Westover, K.D.2
Bushnell, D.A.3
Levitt, M.4
Kornberg, R.D.5
-
84
-
-
30044449636
-
Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs
-
H. Kettenberger, A. Eisenfuhr, F. Brueckner, M. Theis, M. Famulok, P. Cramer, Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs, Nat. Struct. Mol. Biol. 13 (2006) 44-48.
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 44-48
-
-
Kettenberger, H.1
Eisenfuhr, A.2
Brueckner, F.3
Theis, M.4
Famulok, M.5
Cramer, P.6
-
85
-
-
1642276330
-
Structural basis for substrate selection by t7 RNA polymerase
-
D. Temiakov, V. Patlan, M. Anikin, W.T. McAllister, S. Yokoyama, D.G. Vassylyev, Structural basis for substrate selection by t7 RNA polymerase, Cell 116 (2004) 381-391.
-
(2004)
Cell
, vol.116
, pp. 381-391
-
-
Temiakov, D.1
Patlan, V.2
Anikin, M.3
McAllister, W.T.4
Yokoyama, S.5
Vassylyev, D.G.6
-
86
-
-
1842298127
-
Selective targeting and inhibition of yeast RNA polymerase II by RNA aptamers
-
M. Thomas, S. Chedin, C. Carles, M. Riva, M. Famulok, A. Sentenac, Selective targeting and inhibition of yeast RNA polymerase II by RNA aptamers, J. Biol. Chem. 272 (1997) 27980-27986.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 27980-27986
-
-
Thomas, M.1
Chedin, S.2
Carles, C.3
Riva, M.4
Famulok, M.5
Sentenac, A.6
-
87
-
-
0033578689
-
Yeast RNA polymerase II at 5 A resolution
-
J. Fu, A.L. Gnatt, D.A. Bushnell, G.J. Jensen, N.E. Thompson, R.R. Burgess, P.R. David, R.D. Kornberg, Yeast RNA polymerase II at 5 A resolution, Cell 98 (1999) 799-810.
-
(1999)
Cell
, vol.98
, pp. 799-810
-
-
Fu, J.1
Gnatt, A.L.2
Bushnell, D.A.3
Jensen, G.J.4
Thompson, N.E.5
Burgess, R.R.6
David, P.R.7
Kornberg, R.D.8
-
88
-
-
0032738023
-
Effect of DNA lesions on transcription elongation
-
S. Tornaletti, P.C. Hanawalt, Effect of DNA lesions on transcription elongation, Biochimie 81 (1999) 139-146.
-
(1999)
Biochimie
, vol.81
, pp. 139-146
-
-
Tornaletti, S.1
Hanawalt, P.C.2
-
89
-
-
51249094291
-
DNA sequences in gal operon override transcription elongation blocks
-
D.E. Lewis, N. Komissarova, P. Le,M. Kashlev, S.Adhya,DNA sequences in gal operon override transcription elongation blocks, J. Mol. Biol. 382 (2008) 843-858.
-
(2008)
J. Mol. Biol.
, vol.382
, pp. 843-858
-
-
Lewis, D.E.1
Komissarova, N.2
Le, P.3
Kashlev, M.4
Adhya, S.5
-
90
-
-
0027967451
-
RNA chain elongation and termination by mammalian RNA polymerase III. Analysis of tRNA gene transcription by imposing a reversible factor-mediated block to elongation using a sequence-specific DNA binding protein
-
D.E. Syroid, J.P. Capone, RNA chain elongation and termination by mammalian RNA polymerase III. Analysis of tRNA gene transcription by imposing a reversible factor-mediated block to elongation using a sequence-specific DNA binding protein, J. Mol. Biol. 244 (1994) 482-493.
-
(1994)
J. Mol. Biol.
, vol.244
, pp. 482-493
-
-
Syroid, D.E.1
Capone, J.P.2
-
91
-
-
0025309753
-
Elongation by Escherichia coli RNA polymerase is blocked in vitro by a site-specific DNA binding protein
-
P.A. Pavco, D.A. Steege, Elongation by Escherichia coli RNA polymerase is blocked in vitro by a site-specific DNA binding protein, J. Biol. Chem. 265 (1990) 9960-9969.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 9960-9969
-
-
Pavco, P.A.1
Steege, D.A.2
-
92
-
-
67651095903
-
Stability, flexibility, and dynamic interactions of colliding RNA polymerase II elongation complexes
-
H. Saeki, J.Q. Svejstrup, Stability, flexibility, and dynamic interactions of colliding RNA polymerase II elongation complexes, Mol. Cell 35 (2009) 191-205.
-
(2009)
Mol. Cell
, vol.35
, pp. 191-205
-
-
Saeki, H.1
Svejstrup, J.Q.2
-
93
-
-
0028962338
-
Translocation of the Escherichia coli transcription complex observed in the registers 11 to 20: "jumping" of RNA polymerase and asymmetric expansion and contraction of the "transcription bubble"
-
E. Zaychikov, L. Denissova, H. Heumann, Translocation of the Escherichia coli transcription complex observed in the registers 11 to 20: "jumping" of RNA polymerase and asymmetric expansion and contraction of the "transcription bubble", Proc. Natl. Acad. Sci. U. S. A. 92 (1995) 1739-1743.
-
(1995)
Proc. Natl. Acad. Sci. U. S. A.
, vol.92
, pp. 1739-1743
-
-
Zaychikov, E.1
Denissova, L.2
Heumann, H.3
-
94
-
-
0031463993
-
Three transitions in the RNA polymerase II transcription complex during initiation
-
F.C. Holstege, U. Fiedler, H.T. Timmers, Three transitions in the RNA polymerase II transcription complex during initiation, EMBO J. 16 (1997) 7468-7480.
-
(1997)
EMBO J
, vol.16
, pp. 7468-7480
-
-
Holstege, F.C.1
Fiedler, U.2
Timmers, H.T.3
-
95
-
-
34547555850
-
Multisubunit RNA polymerases melt only a single DNA base pair downstream of the active site
-
E. Kashkina, M. Anikin, F. Brueckner, E. Lehmann, S.N. Kochetkov, W.T. McAllister, P. Cramer, D. Temiakov, Multisubunit RNA polymerases melt only a single DNA base pair downstream of the active site, J. Biol. Chem. 282 (2007) 21578-21582.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 21578-21582
-
-
Kashkina, E.1
Anikin, M.2
Brueckner, F.3
Lehmann, E.4
Kochetkov, S.N.5
McAllister, W.T.6
Cramer, P.7
Temiakov, D.8
-
96
-
-
39149093390
-
Structure-function analysis of the RNA polymerase cleft loops elucidates initial transcription, DNA unwinding and RNA displacement
-
S. Naji, M.G. Bertero, P. Spitalny, P. Cramer, M. Thomm, Structure-function analysis of the RNA polymerase cleft loops elucidates initial transcription, DNA unwinding and RNA displacement, Nucleic Acids Res. 36 (2008) 676-687.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 676-687
-
-
Naji, S.1
Bertero, M.G.2
Spitalny, P.3
Cramer, P.4
Thomm, M.5
-
97
-
-
70350784141
-
Sitedirected mutagenesis, purification and assay of Saccharomyces cerevisiae RNA polymerase II
-
C. Domecq, M. Kireeva, J. Archambault, M. Kashlev, B. Coulombe, Z.F. Burton, Sitedirected mutagenesis, purification and assay of Saccharomyces cerevisiae RNA polymerase II, Protein Expr. Purif. 69 (2010) 83-90.
-
(2010)
Protein Expr. Purif.
, vol.69
, pp. 83-90
-
-
Domecq, C.1
Kireeva, M.2
Archambault, J.3
Kashlev, M.4
Coulombe, B.5
Burton, Z.F.6
-
98
-
-
0033762341
-
Functional interaction between Ssu72 and the Rpb2 subunit of RNA polymerase II in Saccharomyces cerevisiae
-
D.L. Pappas Jr., M. Hampsey, Functional interaction between Ssu72 and the Rpb2 subunit of RNA polymerase II in Saccharomyces cerevisiae, Mol. Cell Biol. 20 (2000) 8343-8351.
-
(2000)
Mol. Cell Biol.
, vol.20
, pp. 8343-8351
-
-
Pappas Jr., D.L.1
Hampsey, M.2
-
99
-
-
67749137639
-
Rpb9 subunit controls transcription fidelity by delaying NTP sequestration in RNA polymerase II
-
C.Walmacq,M.L.Kireeva, J. Irvin,Y.Nedialkov, L. Lubkowska, F.Malagon, J.N. Strathern, M. Kashlev, Rpb9 subunit controls transcription fidelity by delaying NTP sequestration in RNA polymerase II, J. Biol. Chem. 284 (2009) 19601-19612.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 19601-19612
-
-
Walmacq, C.1
Kireeva, M.L.2
Irvin, J.3
Nedialkov, Y.4
Lubkowska, L.5
Malagon, F.6
Strathern, J.N.7
Kashlev, M.8
-
100
-
-
2442498536
-
Poliovirus RNA-dependent RNA polymerase (3Dpol): pre-steady-state kinetic analysis of ribonucleotide incorporation in the presence of Mn2+
-
J.J. Arnold, D.W. Gohara, C.E. Cameron, Poliovirus RNA-dependent RNA polymerase (3Dpol): pre-steady-state kinetic analysis of ribonucleotide incorporation in the presence of Mn2+, Biochemistry 43 (2004) 5138-5148.
-
(2004)
Biochemistry
, vol.43
, pp. 5138-5148
-
-
Arnold, J.J.1
Gohara, D.W.2
Cameron, C.E.3
-
101
-
-
67049154068
-
Transcriptional pausing without backtracking
-
R. Landick, Transcriptional pausing without backtracking, Proc. Natl. Acad. Sci. U. S. A. 106 (2009) 8797-8798.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 8797-8798
-
-
Landick, R.1
|