-
1
-
-
0011542799
-
The Pfam protein families database
-
Bateman, A., Birney, E., Cerruti, L., Durbin, R., Etwiller, L., Eddy, S.R., Griffiths-Jones, S., Howe, K.L., Marshall, M., and Sonnhammer, E.L. 2002. The Pfam protein families database. Nucleic Acids Res. 30: 276-280.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 276-280
-
-
Bateman, A.1
Birney, E.2
Cerruti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
Griffiths-Jones, S.7
Howe, K.L.8
Marshall, M.9
Sonnhammer, E.L.10
-
2
-
-
0024383444
-
Structural basis of DNA-protein recognition
-
Brennan, R.G. and Matthews, B.W. 1989. Structural basis of DNA-protein recognition. Trends in Biochem. Sci. 14: 286-290.
-
(1989)
Trends in Biochem. Sci.
, vol.14
, pp. 286-290
-
-
Brennan, R.G.1
Matthews, B.W.2
-
4
-
-
0035312291
-
The human XPG gene: Gene architecture, alternative splicing and single nucleotide polymorphisms
-
Emmert, S., Schneider, T.D., Khan, S.G., and Kraemer, K.H. 2001. The human XPG gene: Gene architecture, alternative splicing and single nucleotide polymorphisms. Nucleic Acids Res. 29: 1443-1452.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1443-1452
-
-
Emmert, S.1
Schneider, T.D.2
Khan, S.G.3
Kraemer, K.H.4
-
5
-
-
0035845587
-
Novel domains of the prokaryotic two-component signal transduction systems
-
Galperin, M.Y., Nikolskaya, A.N., and Koonin, E.V. 2001. Novel domains of the prokaryotic two-component signal transduction systems. FEMS Microbiol. Lett. 203: 11-21.
-
(2001)
FEMS Microbiol. Lett.
, vol.203
, pp. 11-21
-
-
Galperin, M.Y.1
Nikolskaya, A.N.2
Koonin, E.V.3
-
6
-
-
0031473030
-
Displaying the information contents of structural RNA alignments: The structure logos
-
Gorodkin, J., Heyer, L.J., Brunak, S., and Stormo, G.D. 1997. Displaying the information contents of structural RNA alignments: The structure logos. Comput. Appl. Biosci. 13: 583-586.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 583-586
-
-
Gorodkin, J.1
Heyer, L.J.2
Brunak, S.3
Stormo, G.D.4
-
7
-
-
0028825276
-
Automated construction and graphical presentation of protein blocks from unaligned sequences
-
Henikoff, S., Henikoff, J.G., Alford, W.J., and Pietrokovski, S. 1995. Automated construction and graphical presentation of protein blocks from unaligned sequences. Gene 163: GC17-GC26.
-
(1995)
Gene
, vol.163
-
-
Henikoff, S.1
Henikoff, J.G.2
Alford, W.J.3
Pietrokovski, S.4
-
8
-
-
0024234855
-
CLUSTAL: A package for performing multiple sequence alignment on a microcomputer
-
Higgins, D.G. and Sharp, P.M. 1988. CLUSTAL: A package for performing multiple sequence alignment on a microcomputer. Gene 73: 237-244.
-
(1988)
Gene
, vol.73
, pp. 237-244
-
-
Higgins, D.G.1
Sharp, P.M.2
-
9
-
-
0000577528
-
Chimera: An extensible molecular modeling application constructed using standard components
-
Huang, C.C., Couch, G.S., Pettersen, E.F., and Ferrin, T.E. 1996. Chimera: An extensible molecular modeling application constructed using standard components. In Pacific symposium on biocomputing, Vol. 1, pp. 724. http://www.cgl.ucsf.edu/chimera.
-
(1996)
Pacific Symposium on Biocomputing
, vol.1
, pp. 724
-
-
Huang, C.C.1
Couch, G.S.2
Pettersen, E.F.3
Ferrin, T.E.4
-
10
-
-
0004038637
-
-
Oxford University Press, New York
-
Lewin, B. 1994. Genes V. Oxford University Press, New York.
-
(1994)
Genes V
-
-
Lewin, B.1
-
11
-
-
0037015040
-
The program of androgen-responsive genes in neoplastic prostate epithelium
-
Nelson, P.S., Clegg, N., Arnold, H., Ferguson, C., Bonham, M., White, J., Hood, L., and Lin, B. 2002. The program of androgen-responsive genes in neoplastic prostate epithelium. Proc. Natl. Acad. Sci. 99: 11890-11895.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 11890-11895
-
-
Nelson, P.S.1
Clegg, N.2
Arnold, H.3
Ferguson, C.4
Bonham, M.5
White, J.6
Hood, L.7
Lin, B.8
-
12
-
-
0029740167
-
Aromatic hydrogen bond in sequence-specific protein DNA recognition
-
Parkinson, G., Gunasekera, A., Vojtechovsky, J., Zhang, X., Kunkel, T.A., Berman, H., and Ebright, R.H. 1996. Aromatic hydrogen bond in sequence-specific protein DNA recognition. Nat. Struct. Biol. 3: 837-841.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 837-841
-
-
Parkinson, G.1
Gunasekera, A.2
Vojtechovsky, J.3
Zhang, X.4
Kunkel, T.A.5
Berman, H.6
Ebright, R.H.7
-
13
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson, W.R. and Lipman, D.J. 1988. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. 85: 2444-2448.
-
(1988)
Proc. Natl. Acad. Sci.
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
14
-
-
0037432703
-
An extracellular calcium-binding domain in bacteria with a distant relationship to EF-hands
-
Rigden, D.J., Jedrzejas, M.J., and Galperin, M.Y. 2003. An extracellular calcium-binding domain in bacteria with a distant relationship to EF-hands. FEMS Microbiol. Lett. 221: 103-110.
-
(2003)
FEMS Microbiol. Lett.
, vol.221
, pp. 103-110
-
-
Rigden, D.J.1
Jedrzejas, M.J.2
Galperin, M.Y.3
-
15
-
-
0032573426
-
A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome
-
Robison, K., McGuire, A.M., and Church, G.M. 1998. A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome. J. Mol. Biol. 284: 241-254.
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 241-254
-
-
Robison, K.1
McGuire, A.M.2
Church, G.M.3
-
16
-
-
0031583033
-
Information content of individual genetic sequences
-
Schneider, T.D. 1997. Information content of individual genetic sequences. J. Theor. Biol. 189: 427-441.
-
(1997)
J. Theor. Biol.
, vol.189
, pp. 427-441
-
-
Schneider, T.D.1
-
17
-
-
0035584142
-
Strong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication and transcription initiation
-
Schneider, T.D. 2001. Strong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication and transcription initiation. Nucleic Acid Res. 29: 4881-4891.
-
(2001)
Nucleic Acid Res.
, vol.29
, pp. 4881-4891
-
-
Schneider, T.D.1
-
18
-
-
0025008168
-
Sequence logos: A new way to display consensus sequences
-
Schneider, T.D. and Stephens, R.M. 1990. Sequence logos: A new way to display consensus sequences. Nucleic Acids Res. 18: 6097-6100.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 6097-6100
-
-
Schneider, T.D.1
Stephens, R.M.2
-
19
-
-
0020480249
-
A design for computer nucleic-acid sequence storage, retrieval, and manipulation
-
Schneider, T.D., Stormo, G.D., Haemer, J.S., and Gold, L. 1982. A design for computer nucleic-acid sequence storage, retrieval, and manipulation. Nucleic Acids Res. 10: 3013-3024.
-
(1982)
Nucleic Acids Res.
, vol.10
, pp. 3013-3024
-
-
Schneider, T.D.1
Stormo, G.D.2
Haemer, J.S.3
Gold, L.4
-
20
-
-
0023042012
-
Information content of binding sites on nucleotide sequences
-
Schneider, T.D., Stormo, G.D., Gold, L., and Ehrenfeucht, A. 1986. Information content of binding sites on nucleotide sequences. J. Mol. Biol. 188: 415-431.
-
(1986)
J. Mol. Biol.
, vol.188
, pp. 415-431
-
-
Schneider, T.D.1
Stormo, G.D.2
Gold, L.3
Ehrenfeucht, A.4
-
21
-
-
0025914242
-
Crystal structure of a CAP-DNA complex: The DNA is bent by 90
-
Schultz, S.C., Shields, G.C., and Steitz, T.A. 1991. Crystal structure of a CAP-DNA complex: The DNA is bent by 90°. Science 253: 1001-1007.
-
(1991)
Science
, vol.253
, pp. 1001-1007
-
-
Schultz, S.C.1
Shields, G.C.2
Steitz, T.A.3
-
22
-
-
0000127073
-
Sequence-specific recognition of double helical nucleic acids by proteins
-
Seeman, N.C., Rosenberg, J.M., and Rich, A. 1976. Sequence-specific recognition of double helical nucleic acids by proteins. Proc. Natl. Acad. Sci. 73: 804-808.
-
(1976)
Proc. Natl. Acad. Sci.
, vol.73
, pp. 804-808
-
-
Seeman, N.C.1
Rosenberg, J.M.2
Rich, A.3
-
23
-
-
84968229879
-
Sequence logos: A powerful, yet simple, tool. Proceedings of the twenty-sixth annual Hawaii international conference on system sciences
-
(eds. T.N. Mudge et al.) IEEE Computer Society Press, Los Alamitos, CA
-
Shaner, M.C., Blair, I.M., and Schneider, T.D. 1993. Sequence logos: A powerful, yet simple, tool. Proceedings of the twenty-sixth annual Hawaii international conference on system sciences. In Architecture and biotechnology computing (eds. T.N. Mudge et al.) Vol 1., pp. 813-821. IEEE Computer Society Press, Los Alamitos, CA.
-
(1993)
Architecture and Biotechnology Computing
, vol.1
, pp. 813-821
-
-
Shaner, M.C.1
Blair, I.M.2
Schneider, T.D.3
-
24
-
-
0027054380
-
Features of spliceosome evolution and function inferred from an analysis of the information at human splice sites
-
Stephens, R.M. and Schneider, T.D. 1992. Features of spliceosome evolution and function inferred from an analysis of the information at human splice sites. J. Mol. Biol. 228: 1124-1136.
-
(1992)
J. Mol. Biol.
, vol.228
, pp. 1124-1136
-
-
Stephens, R.M.1
Schneider, T.D.2
-
25
-
-
0032494751
-
Information content and free energy in DNA-protein interactions
-
Stormo, G.D. 1998. Information content and free energy in DNA-protein interactions. J. Theor. Biol. 195: 135-137.
-
(1998)
J. Theor. Biol.
, vol.195
, pp. 135-137
-
-
Stormo, G.D.1
|