-
1
-
-
59749103397
-
Molecular mechanisms of archaeal RNA polymerase
-
Grohmann, D., Hirtreiter, A., and Werner, F. (2009) Molecular mechanisms of archaeal RNA polymerase. Biochem. Soc. Trans. 37, 12-17
-
(2009)
Biochem. Soc. Trans.
, vol.37
, pp. 12-17
-
-
Grohmann, D.1
Hirtreiter, A.2
Werner, F.3
-
2
-
-
84890639854
-
-
Garrett, R., and Klenk, H.-P., eds Blackwell Publishing, Oxford, United Kingdom
-
Thomm, M., and Hausner, W. (2007) In Archaea: Evolution, Physiology and Molecular Biology (Garrett, R., and Klenk, H.-P., eds) pp. 185-198, Blackwell Publishing, Oxford, United Kingdom
-
(2007)
Archaea: Evolution, Physiology and Molecular Biology
, pp. 185-198
-
-
Thomm, M.1
Hausner, W.2
-
3
-
-
27844564819
-
Determinants of transcription initiation by archaeal RNA polymerase
-
Bartlett, M. S. (2005) Determinants of transcription initiation by archaeal RNA polymerase. Curr. Opin. Microbiol. 8, 677-684
-
(2005)
Curr. Opin. Microbiol.
, vol.8
, pp. 677-684
-
-
Bartlett, M.S.1
-
4
-
-
20344386725
-
Archaeal transcription and its regulators
-
DOI 10.1111/j.1365-2958.2005.04627.x
-
Geiduschek, E. P., and Ouhammouch, M. (2005) Archaeal transcription and its regulators. Mol. Microbiol. 56, 1397-1407 (Pubitemid 40780638)
-
(2005)
Molecular Microbiology
, vol.56
, Issue.6
, pp. 1397-1407
-
-
Geiduschek, E.P.1
Ouhammouch, M.2
-
5
-
-
0035067057
-
Mechanism and regulation of transcription in archaea
-
DOI 10.1016/S1369-5274(00)00190-9
-
Bell, S. D., and Jackson, S. P. (2001) Mechanism and regulation of transcription in archaea. Curr. Opin. Microbiol. 4, 208-213 (Pubitemid 32294424)
-
(2001)
Current Opinion in Microbiology
, vol.4
, Issue.2
, pp. 208-213
-
-
Bell, S.D.1
Jackson, S.P.2
-
6
-
-
0029860589
-
Two transcription factors related with the eucaryal transcription factors TATA-binding protein and transcription factor IIB direct promoter recognition by an archaeal RNA polymerase
-
DOI 10.1074/jbc.271.47.30144
-
Hausner, W., Wettach, J., Hethke, C., and Thomm, M. (1996) Two transcription factors related with the eucaryal transcription factors TATA-binding protein and transcription factor IIB direct promoter recognition by an archaeal RNA polymerase. J. Biol. Chem. 271, 30144-30148 (Pubitemid 26389656)
-
(1996)
Journal of Biological Chemistry
, vol.271
, Issue.47
, pp. 30144-30148
-
-
Hausner, W.1
Wettach, J.2
Hethke, C.3
Thomm, M.4
-
7
-
-
0030974754
-
Factor requirements for transcription in the Archaeon Sulfolobus shibatae
-
DOI 10.1093/emboj/16.10.2927
-
Qureshi, S. A., Bell, S. D., and Jackson, S. P. (1997) Factor requirements for transcription in the archaeon Sulfolobus shibatae. EMBOJ. 16, 2927-2936 (Pubitemid 27226228)
-
(1997)
EMBO Journal
, vol.16
, Issue.10
, pp. 2927-2936
-
-
Qureshi, S.A.1
Bell, S.D.2
Jackson, S.P.3
-
8
-
-
0031990302
-
Sequence-specific DNA binding by the S. shibatae TFIIB homolog, TFB, and its effect on promoter strength
-
Qureshi, S. A., and Jackson, S. P. (1998) Sequence-specific DNA binding by the S. shibatae TFIIB homolog, TFB, and its effect on promoter strength. Mol. Cell 1, 389-400 (Pubitemid 128378887)
-
(1998)
Molecular Cell
, vol.1
, Issue.3
, pp. 389-400
-
-
Qureshi, S.A.1
Jackson, S.P.2
-
9
-
-
0033598809
-
Orientation of the transcription preinitiation complex in archaea
-
Bell, S. D., Kosa, P. L., Sigler, P. B., and Jackson, S. P. (1999) Orientation of the transcription preinitiation complex in archaea. Proc. Natl. Acad. Sci. U.S.A. 96, 13662-13667
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 13662-13667
-
-
Bell, S.D.1
Kosa, P.L.2
Sigler, P.B.3
Jackson, S.P.4
-
10
-
-
0034745386
-
The archaeal TFIIEα homologue facilitates transcription initiation by enhancing TATA-box recognition
-
DOI 10.1093/embo-reports/kve021
-
Bell, S. D., Brinkman, A. B., van der Oost, J., and Jackson, S. P. (2001) The archaeal TFIIEα homolog facilitates transcription initiation by enhancing TATA box recognition. EMBO Rep. 2, 133-138 (Pubitemid 32229740)
-
(2001)
EMBO Reports
, vol.2
, Issue.2
, pp. 133-138
-
-
Bell, S.D.1
Brinkman, A.B.2
Van Der, O.J.3
Jackson, S.P.4
-
11
-
-
0035116309
-
TFE, an archaeal transcription factor in Methanobacterium thermoautotrophicum related to eucaryal transcription factor TFIIEα
-
DOI 10.1128/JB.183.5.1813-1818.2001
-
Hanzelka, B. L., Darcy, T. J., and Reeve, J. N. (2001) TFE, an archaeal transcription factor in Methanobacterium thermoautotrophicum related to eucaryal transcription factor TFIIEα. J. Bacteriol. 183, 1813-1818 (Pubitemid 32172331)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.5
, pp. 1813-1818
-
-
Hanzelka, B.L.1
Darcy, T.J.2
Reeve, J.N.3
-
12
-
-
37249018447
-
Transcription factor E is a part of transcription elongation complexes
-
DOI 10.1074/jbc.M707371200
-
Grünberg, S., Bartlett, M. S., Naji, S., and Thomm, M. (2007) Transcription factor E is a part of transcription elongation complexes. J. Biol. Chem. 282, 35482-35490 (Pubitemid 350277092)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.49
, pp. 35482-35490
-
-
Grunberg, S.1
Bartlett, M.S.2
Naji, S.3
Thomm, M.4
-
13
-
-
0033485460
-
DNA-binding proteins and evolution of transcription regulation in the archaea
-
Aravind, L., and Koonin, E. V. (1999) DNA-binding proteins and evolution of transcription regulation in the archaea. Nucleic Acids Res. 27, 4658-4670
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4658-4670
-
-
Aravind, L.1
Koonin, E.V.2
-
14
-
-
34247580135
-
Crystal Structure of the Archaeal Heat Shock Regulator from Pyrococcus furiosus: A Molecular Chimera Representing Eukaryal and Bacterial Features
-
DOI 10.1016/j.jmb.2007.03.044, PII S0022283607003993
-
Liu, W., Vierke, G., Wenke, A. K., Thomm, M., and Ladenstein, R. (2007) Crystal structure of the archaeal heat shock regulator from Pyrococcus furiosus: a molecular chimera representing eukaryal and bacterial features. J. Mol. Biol. 369, 474-488 (Pubitemid 46678052)
-
(2007)
Journal of Molecular Biology
, vol.369
, Issue.2
, pp. 474-488
-
-
Liu, W.1
Vierke, G.2
Wenke, A.-K.3
Thomm, M.4
Ladenstein, R.5
-
15
-
-
20344396840
-
Archaeal transcription regulation: Variation on a bacterial theme?
-
Bell, S. D. (2005) Archaeal transcription regulation: variation on a bacterial theme? Trends Microbiol. 13, 262-265
-
(2005)
Trends Microbiol.
, vol.13
, pp. 262-265
-
-
Bell, S.D.1
-
16
-
-
37749042263
-
-
Cavicchioli, R., ed ASM Press, Washington, D.C.
-
Thomm, M. (2007) In Archaea: Molecular and Cellular Biology (Cavicchioli, R., ed) pp. 139-157, ASM Press, Washington, D.C.
-
(2007)
Archaea: Molecular and Cellular Biology
, pp. 139-157
-
-
Thomm, M.1
-
17
-
-
79251535005
-
The Lrp family of transcriptional regulators in archaea
-
Peeters, E., and Charlier, D. (2010) The Lrp family of transcriptional regulators in archaea. Archaea 2010, 750457
-
(2010)
Archaea
, vol.2010
, pp. 750457
-
-
Peeters, E.1
Charlier, D.2
-
18
-
-
0038303232
-
Activation of archaeal transcription by recruitment of the TATA-binding protein
-
DOI 10.1073/pnas.0837150100
-
Ouhammouch, M., Dewhurst, R. E., Hausner, W., Thomm, M., and Geiduschek, E. P. (2003) Activation of archaeal transcription by recruitment of the TATA-binding protein. Proc. Natl. Acad. Sci. U.S.A. 100, 5097-5102 (Pubitemid 36542664)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.9
, pp. 5097-5102
-
-
Ouhammouch, M.1
Dewhurst, R.E.2
Hausner, W.3
Thomm, M.4
Geiduschek, E.P.5
-
19
-
-
17644419066
-
Promoter architecture and response to a positive regulator of archaeal transcription
-
DOI 10.1111/j.1365-2958.2005.04563.x
-
Ouhammouch, M., Langham, G. E., Hausner, W., Simpson, A. J., El-Sayed, N. M., and Geiduschek, E. P. (2005) Promoter architecture and response to a positive regulator of archaeal transcription. Mol. Microbiol. 56, 625-637 (Pubitemid 40562358)
-
(2005)
Molecular Microbiology
, vol.56
, Issue.3
, pp. 625-637
-
-
Ouhammouch, M.1
Langham, G.E.2
Hausner, W.3
Simpson, A.J.4
El-Sayed, N.M.A.5
Geiduschek, E.P.6
-
20
-
-
76949083613
-
Interaction of transcriptional activator GvpE with TATA box-binding proteins of Halobacterium salinarum
-
Teufel, K., and Pfeifer, F. (2010) Interaction of transcriptional activator GvpE with TATA box-binding proteins of Halobacterium salinarum. Arch. Microbiol. 192, 143-149
-
(2010)
Arch. Microbiol.
, vol.192
, pp. 143-149
-
-
Teufel, K.1
Pfeifer, F.2
-
21
-
-
58149301541
-
SurR: A transcriptional activator and repressor controlling hydrogen and elemental sulfur metabolism in Pyrococcus furiosus
-
Lipscomb, G. L., Keese, A. M., Cowart, D. M., Schut, G. J., Thomm, M., Adams, M. W., and Scott, R. A. (2009) SurR: a transcriptional activator and repressor controlling hydrogen and elemental sulfur metabolism in Pyrococcus furiosus. Mol. Microbiol. 71, 332-349
-
(2009)
Mol. Microbiol.
, vol.71
, pp. 332-349
-
-
Lipscomb, G.L.1
Keese, A.M.2
Cowart, D.M.3
Schut, G.J.4
Thomm, M.5
Adams, M.W.6
Scott, R.A.7
-
22
-
-
49749153798
-
The role of TrmB and TrmB-like transcriptional regulators for sugar transport and metabolism in the hyperthermophilic archaeon Pyrococcus furiosus
-
Lee, S. J., Surma, M., Hausner, W., Thomm, M., and Boos, W. (2008) The role of TrmB and TrmB-like transcriptional regulators for sugar transport and metabolism in the hyperthermophilic archaeon Pyrococcus furiosus. Arch. Microbiol. 190, 247-256
-
(2008)
Arch. Microbiol.
, vol.190
, pp. 247-256
-
-
Lee, S.J.1
Surma, M.2
Hausner, W.3
Thomm, M.4
Boos, W.5
-
23
-
-
77952257912
-
Shuttle vector-based transformation system for Pyrococcus furiosus
-
Waege, I., Schmid, G., Thumann, S., Thomm, M., and Hausner, W. (2010) Shuttle vector-based transformation system for Pyrococcus furiosus. Appl. Environ. Microbiol. 76, 3308-3313
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 3308-3313
-
-
Waege, I.1
Schmid, G.2
Thumann, S.3
Thomm, M.4
Hausner, W.5
-
24
-
-
70450171352
-
RNA polymerase II-TFIIB structure and mechanism of transcription initiation
-
Kostrewa, D., Zeller, M. E., Armache, K. J., Seizl, M., Leike, K., Thomm, M., and Cramer, P. (2009) RNA polymerase II-TFIIB structure and mechanism of transcription initiation. Nature 462, 323-330
-
(2009)
Nature
, vol.462
, pp. 323-330
-
-
Kostrewa, D.1
Zeller, M.E.2
Armache, K.J.3
Seizl, M.4
Leike, K.5
Thomm, M.6
Cramer, P.7
-
25
-
-
0042232576
-
Analysis of the open region and of DNA-protein contacts of archaeal RNA polymerase transcription complexes during transition from initiation to elongation
-
DOI 10.1074/jbc.M303633200
-
Spitalny, P., and Thomm, M. (2003) Analysis of the open region and of DNA-protein contacts of archaeal RNA polymerase transcription complexes during transition from initiation to elongation. J. Biol. Chem. 278, 30497-30505 (Pubitemid 36994553)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.33
, pp. 30497-30505
-
-
Spitalny, P.1
Thomm, M.2
-
26
-
-
0345151826
-
Cell-free transcription at 95°: Thermostability of transcriptional components and DNA topology requirements of pyrococcus transcription
-
Hethke, C., Bergerat, A., Hausner, W., Forterre, P., and Thomm, M. (1999) Cell-free transcription at 95° : thermostability of transcriptional components and DNA topology requirements of Pyrococcus transcription. Genetics 152, 1325-1333 (Pubitemid 29370316)
-
(1999)
Genetics
, vol.152
, Issue.4
, pp. 1325-1333
-
-
Hethke, C.1
Bergerat, A.2
Hausner, W.3
Forterre, P.4
Thomm, M.5
-
27
-
-
0023623752
-
Hydroxyl radical footprinting: A high-resolution method for mapping protein- DNA contacts
-
Tullius, T. D., Dombroski, B. A., Churchill, M. E., and Kam, L. (1987) Hydroxyl radical footprinting: a high-resolution method for mapping protein- DNA contacts. Methods Enzymol. 155, 537-558
-
(1987)
Methods Enzymol.
, vol.155
, pp. 537-558
-
-
Tullius, T.D.1
Dombroski, B.A.2
Churchill, M.E.3
Kam, L.4
-
29
-
-
0026768866
-
Elements of an archaeal promoter defined by mutational analysis
-
Hain, J., Reiter, W. D., Hüdepohl, U., and Zillig, W. (1992) Elements of an archaeal promoter defined by mutational analysis. Nucleic Acids Res. 20, 5423-5428
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 5423-5428
-
-
Hain, J.1
Reiter, W.D.2
Hüdepohl, U.3
Zillig, W.4
-
30
-
-
33745015058
-
Identification of a glycolytic regulon in the archaea Pyrococcus and Thermococcus
-
DOI 10.1111/j.1574-6968.2006.00292.x
-
van de Werken, H. J., Verhees, C. H., Akerboom, J., de Vos, W. M., and van der Oost, J. (2006) Identification of a glycolytic regulon in the archaea Pyrococcus and Thermococcus. FEMS Microbiol. Lett. 260, 69-76 (Pubitemid 43873573)
-
(2006)
FEMS Microbiology Letters
, vol.260
, Issue.1
, pp. 69-76
-
-
Van De, W.H.J.G.1
Verhees, C.H.2
Akerboom, J.3
De Vos, W.M.4
Van Der, O.J.5
-
31
-
-
0033598826
-
The structural basis for the oriented assembly of a TBP-TFB-promoter complex
-
Littlefield, O., Korkhin, Y., and Sigler P. B. (1999) The structural basis for the oriented assembly of a TBP-TFB-promoter complex. Proc. Natl. Acad. Sci. U.S.A. 96, 13668-13673
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 13668-13673
-
-
Littlefield, O.1
Korkhin, Y.2
Sigler, P.B.3
-
32
-
-
0034602843
-
Structural basis of preinitiation complex assembly on human Pol II promoters
-
Tsai, F. T., and Sigler, P. B. (2000) Structural basis of preinitiation complex assembly on human pol II promoters. EMBO J. 19, 25-36 (Pubitemid 30009222)
-
(2000)
EMBO Journal
, vol.19
, Issue.1
, pp. 25-36
-
-
Tsai, F.T.F.1
Sigler, P.B.2
-
33
-
-
1242339612
-
Topography of the Euryarchaeal Transcription Initiation Complex
-
DOI 10.1074/jbc.M311429200
-
Bartlett, M. S., Thomm, M., and Geiduschek, E. P. (2004) Topography of the euryarchaeal transcription initiation complex. J. Biol. Chem. 279, 5894-5903 (Pubitemid 38220622)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.7
, pp. 5894-5903
-
-
Bartlett, M.S.1
Thomm, M.2
Geiduschek, E.P.3
-
34
-
-
1642453651
-
Transcription Factor B Contacts Promoter DNA Near the Transcription Start Site of the Archaeal Transcription Initiation Complex
-
DOI 10.1074/jbc.M311433200
-
Renfrow, M. B., Naryshkin, N., Lewis, L. M., Chen, H. T., Ebright, R. H., and Scott, R. A. (2004) Transcription factor B contacts promoter DNA near the transcription start site of the archaeal transcription initiation complex. J. Biol. Chem. 279, 2825-2831 (Pubitemid 38114273)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.4
, pp. 2825-2831
-
-
Renfrow, M.B.1
Naryshkin, N.2
Lewis, L.M.3
Chen, H.-T.4
Ebright, R.H.5
Scott, R.A.6
-
35
-
-
70449591469
-
An upstream activation element exerting differential transcription activation on an archaeal promoter
-
Peng, N., Xia, Q., Chen, Z., Liang, Y. X., and She, Q. (2009) An upstream activation element exerting differential transcription activation on an archaeal promoter. Mol. Microbiol. 74, 928-939
-
(2009)
Mol. Microbiol.
, vol.74
, pp. 928-939
-
-
Peng, N.1
Xia, Q.2
Chen, Z.3
Liang, Y.X.4
She, Q.5
-
36
-
-
0037119358
-
The Sulfolobus solfataricus Lrp-like protein LysM regulates lysine biosynthesis in response to lysine availability
-
DOI 10.1074/jbc.M203528200
-
Brinkman, A. B., Bell, S. D., Lebbink, R. J., de Vos, W. M., and van der Oost, J. (2002) The Sulfolobus solfataricus Lrp-like protein LysM regulates lysine biosynthesis in response to lysine availability. J. Biol. Chem. 277, 29537-29549 (Pubitemid 41079241)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.33
, pp. 29537-29549
-
-
Brinkman, A.B.1
Bell, S.D.2
Lebbinkt, R.J.3
De Vos, W.M.4
Der Van, O.J.5
-
37
-
-
60349112392
-
Ss-LrpB, a transcriptional regulator from Sulfolobus solfataricus, regulates a gene cluster with a pyruvate ferredoxin oxidoreductase-encoding operon and permease genes
-
Peeters, E., Albers, S. V., Vassart, A., Driessen, A. J., and Charlier, D. (2009) Ss-LrpB, a transcriptional regulator from Sulfolobus solfataricus, regulates a gene cluster with a pyruvate ferredoxin oxidoreductase-encoding operon and permease genes. Mol. Microbiol. 71, 972-988
-
(2009)
Mol. Microbiol.
, vol.71
, pp. 972-988
-
-
Peeters, E.1
Albers, S.V.2
Vassart, A.3
Driessen, A.J.4
Charlier, D.5
-
38
-
-
79952113624
-
NrpRII mediates contacts between NrpRI and general transcription factors in the archaeon Methanosarcina mazei Gö1
-
Weidenbach, K., Ehlers, C., Kock, J., and Schmitz R. A. (2010) NrpRII mediates contacts between NrpRI and general transcription factors in the archaeon Methanosarcina mazei Gö1. FEBS J. 277, 4398-4411
-
(2010)
FEBS J.
, vol.277
, pp. 4398-4411
-
-
Weidenbach, K.1
Ehlers, C.2
Kock, J.3
Schmitz, R.A.4
-
39
-
-
36348974664
-
A global transcriptional regulator in Thermococcus kodakaraensis controls the expression levels of both glycolytic and gluconeogenic enzyme-encoding genes
-
DOI 10.1074/jbc.M703424200
-
Kanai, T., Akerboom, J., Takedomi, S., van de Werken, H. J., Blombach, F., van der Oost, J., Murakami, T., Atomi, H., and Imanaka, T. (2007)Aglobal transcriptional regulator in Thermococcus kodakaraensis controls the expression levels of both glycolytic and gluconeogenic enzyme-encoding genes. J. Biol. Chem. 282, 33659-33670 (Pubitemid 350159557)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.46
, pp. 33659-33670
-
-
Kanai, T.1
Akerboom, J.2
Takedomi, S.3
Van De, W.H.J.G.4
Blombach, F.5
Van Der, O.J.6
Murakami, T.7
Atomi, H.8
Imanaka, T.9
-
40
-
-
33646815967
-
Structural analysis of the transcriptional regulator homolog protein from Pyrococcus horikoshii OT3
-
DOI 10.1109/TASC.2006.870000
-
Okada, U., Sakai, N., Yao, M., Watanabe, N., and Tanaka, I. (2006) Structural analysis of the transcriptional regulator homolog protein from Pyrococcus horikoshii OT3. Proteins 63, 1084-1086 (Pubitemid 43765158)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.63
, Issue.4
, pp. 1084-1086
-
-
Okada, U.1
Sakai, N.2
Yao, M.3
Watanabe, N.4
Tanaka, I.5
-
41
-
-
77952000337
-
Bacterial metal-sensing proteins exemplified by ArsR-SmtB family repressors
-
Osman, D., and Cavet, J. S. (2010) Bacterial metal-sensing proteins exemplified by ArsR-SmtB family repressors. Nat. Prod. Rep. 27, 668-680
-
(2010)
Nat. Prod. Rep.
, vol.27
, pp. 668-680
-
-
Osman, D.1
Cavet, J.S.2
|