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Volumn 13, Issue 3, 2017, Pages

Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease

Author keywords

[No Author keywords available]

Indexed keywords

COLONY STIMULATING FACTOR 1; LIPOPOLYSACCHARIDE; LONG UNTRANSLATED RNA; RNA; TRANSCRIPTOME; CYTOKINE; LIGAND; TRANSCRIPTION FACTOR;

EID: 85016560823     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1006641     Document Type: Article
Times cited : (100)

References (151)
  • 1
    • 84898809123 scopus 로고    scopus 로고
    • The microbiome in inflammatory bowel disease: current status and the future ahead
    • 24560869
    • Kostic AD, Xavier RJ, Gevers D, (2014) The microbiome in inflammatory bowel disease: current status and the future ahead. Gastroenterology146: 1489–1499. doi: 10.1053/j.gastro.2014.02.009 24560869
    • (2014) Gastroenterology , vol.146 , pp. 1489-1499
    • Kostic, A.D.1    Xavier, R.J.2    Gevers, D.3
  • 2
    • 84964772502 scopus 로고    scopus 로고
    • Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci
    • 26974007
    • Ellinghaus D, Jostins L, Spain SL, Cortes A, Bethune J, et al. (2016) Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci. Nat Genet48: 510–518. doi: 10.1038/ng.3528 26974007
    • (2016) Nat Genet , vol.48 , pp. 510-518
    • Ellinghaus, D.1    Jostins, L.2    Spain, S.L.3    Cortes, A.4    Bethune, J.5
  • 3
    • 84856070217 scopus 로고    scopus 로고
    • Emerging patterns of genetic overlap across autoimmune disorders
    • 22284131
    • Richard-Miceli C, Criswell LA, (2012) Emerging patterns of genetic overlap across autoimmune disorders. Genome Med4: 6. doi: 10.1186/gm305 22284131
    • (2012) Genome Med , vol.4 , pp. 6
    • Richard-Miceli, C.1    Criswell, L.A.2
  • 4
    • 84868336049 scopus 로고    scopus 로고
    • Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease
    • 23128233
    • Jostins L, Ripke S, Weersma RK, Duerr RH, McGovern DP, et al. (2012) Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. Nature491: 119–124. doi: 10.1038/nature11582 23128233
    • (2012) Nature , vol.491 , pp. 119-124
    • Jostins, L.1    Ripke, S.2    Weersma, R.K.3    Duerr, R.H.4    McGovern, D.P.5
  • 5
    • 84940771118 scopus 로고    scopus 로고
    • Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations
    • 26192919
    • Liu JZ, van Sommeren S, Huang H, Ng SC, Alberts R, et al. (2015) Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations. Nat Genet47: 979–986. doi: 10.1038/ng.3359 26192919
    • (2015) Nat Genet , vol.47 , pp. 979-986
    • Liu, J.Z.1    van Sommeren, S.2    Huang, H.3    Ng, S.C.4    Alberts, R.5
  • 6
    • 84943240073 scopus 로고    scopus 로고
    • Genetics of Inflammatory Bowel Diseases
    • 26255561,e1162
    • McGovern DP, Kugathasan S, Cho JH, (2015) Genetics of Inflammatory Bowel Diseases. Gastroenterology149: 1163–1176 e1162. doi: 10.1053/j.gastro.2015.08.001 26255561
    • (2015) Gastroenterology , vol.149 , pp. 1163-1176
    • McGovern, D.P.1    Kugathasan, S.2    Cho, J.H.3
  • 7
    • 84928038337 scopus 로고    scopus 로고
    • Pathogenesis of Crohn's disease
    • 26097717
    • Boyapati R, Satsangi J, Ho GT, (2015) Pathogenesis of Crohn's disease. F1000Prime Rep7: 44. doi: 10.12703/P7-44 26097717
    • (2015) F1000Prime Rep , vol.7 , pp. 44
    • Boyapati, R.1    Satsangi, J.2    Ho, G.T.3
  • 9
    • 84928612813 scopus 로고    scopus 로고
    • High-density mapping of the MHC identifies a shared role for HLA-DRB1*01:03 in inflammatory bowel diseases and heterozygous advantage in ulcerative colitis
    • 25559196
    • Goyette P, Boucher G, Mallon D, Ellinghaus E, Jostins L, et al. (2015) High-density mapping of the MHC identifies a shared role for HLA-DRB1*01:03 in inflammatory bowel diseases and heterozygous advantage in ulcerative colitis. Nat Genet47: 172–179. doi: 10.1038/ng.3176 25559196
    • (2015) Nat Genet , vol.47 , pp. 172-179
    • Goyette, P.1    Boucher, G.2    Mallon, D.3    Ellinghaus, E.4    Jostins, L.5
  • 10
    • 84875225901 scopus 로고    scopus 로고
    • Contributions of dendritic cells and macrophages to intestinal homeostasis and immune defense
    • 23399695
    • Farache J, Zigmond E, Shakhar G, Jung S, (2013) Contributions of dendritic cells and macrophages to intestinal homeostasis and immune defense. Immunol Cell Biol91: 232–239. doi: 10.1038/icb.2012.79 23399695
    • (2013) Immunol Cell Biol , vol.91 , pp. 232-239
    • Farache, J.1    Zigmond, E.2    Shakhar, G.3    Jung, S.4
  • 11
    • 70349286007 scopus 로고    scopus 로고
    • Intestinal macrophages: differentiation and involvement in intestinal immunopathologies
    • 19533135
    • Weber B, Saurer L, Mueller C, (2009) Intestinal macrophages: differentiation and involvement in intestinal immunopathologies. Semin Immunopathol31: 171–184. doi: 10.1007/s00281-009-0156-5 19533135
    • (2009) Semin Immunopathol , vol.31 , pp. 171-184
    • Weber, B.1    Saurer, L.2    Mueller, C.3
  • 12
    • 84936766731 scopus 로고    scopus 로고
    • Improved integrative framework combining association data with gene expression features to prioritize Crohn's disease genes
    • 25935003
    • Ning K, Gettler K, Zhang W, Ng SM, Bowen BM, et al. (2015) Improved integrative framework combining association data with gene expression features to prioritize Crohn's disease genes. Hum Mol Genet24: 4147–4157. doi: 10.1093/hmg/ddv142 25935003
    • (2015) Hum Mol Genet , vol.24 , pp. 4147-4157
    • Ning, K.1    Gettler, K.2    Zhang, W.3    Ng, S.M.4    Bowen, B.M.5
  • 13
    • 84902590323 scopus 로고    scopus 로고
    • Macrophages in intestinal homeostasis and inflammation
    • 24942685
    • Bain CC, Mowat AM, (2014) Macrophages in intestinal homeostasis and inflammation. Immunol Rev260: 102–117. doi: 10.1111/imr.12192 24942685
    • (2014) Immunol Rev , vol.260 , pp. 102-117
    • Bain, C.C.1    Mowat, A.M.2
  • 14
    • 84875830139 scopus 로고    scopus 로고
    • Intestinal macrophages: well educated exceptions from the rule
    • 23477922
    • Zigmond E, Jung S, (2013) Intestinal macrophages: well educated exceptions from the rule. Trends Immunol34: 162–168. doi: 10.1016/j.it.2013.02.001 23477922
    • (2013) Trends Immunol , vol.34 , pp. 162-168
    • Zigmond, E.1    Jung, S.2
  • 15
    • 30044448462 scopus 로고    scopus 로고
    • Colony-stimulating factor-1 in immunity and inflammation
    • 16337366
    • Chitu V, Stanley ER, (2006) Colony-stimulating factor-1 in immunity and inflammation. Curr Opin Immunol18: 39–48. doi: 10.1016/j.coi.2005.11.006 16337366
    • (2006) Curr Opin Immunol , vol.18 , pp. 39-48
    • Chitu, V.1    Stanley, E.R.2
  • 16
    • 54449093241 scopus 로고    scopus 로고
    • Differentiation and heterogeneity in the mononuclear phagocyte system
    • 19079210
    • Hume DA, (2008) Differentiation and heterogeneity in the mononuclear phagocyte system. Mucosal Immunol1: 432–441. doi: 10.1038/mi.2008.36 19079210
    • (2008) Mucosal Immunol , vol.1 , pp. 432-441
    • Hume, D.A.1
  • 17
    • 84905093326 scopus 로고    scopus 로고
    • Homeostasis in the mononuclear phagocyte system
    • In press
    • Jenkins SJ, Hume DA, (2014) Homeostasis in the mononuclear phagocyte system. Trends in Immunology In press.
    • (2014) Trends in Immunology
    • Jenkins, S.J.1    Hume, D.A.2
  • 18
    • 84908547515 scopus 로고    scopus 로고
    • The monocyte-macrophage axis in the intestine
    • 24726741
    • Bain CC, Mowat AM, (2014) The monocyte-macrophage axis in the intestine. Cell Immunol291: 41–48. doi: 10.1016/j.cellimm.2014.03.012 24726741
    • (2014) Cell Immunol , vol.291 , pp. 41-48
    • Bain, C.C.1    Mowat, A.M.2
  • 19
    • 78149462163 scopus 로고    scopus 로고
    • An antibody against the colony-stimulating factor 1 receptor depletes the resident subset of monocytes and tissue- and tumor-associated macrophages but does not inhibit inflammation
    • 20682855
    • MacDonald KP, Palmer JS, Cronau S, Seppanen E, Olver S, et al. An antibody against the colony-stimulating factor 1 receptor depletes the resident subset of monocytes and tissue- and tumor-associated macrophages but does not inhibit inflammation. Blood116: 3955–3963. doi: 10.1182/blood-2010-02-266296 20682855
    • Blood , vol.116 , pp. 3955-3963
    • MacDonald, K.P.1    Palmer, J.S.2    Cronau, S.3    Seppanen, E.4    Olver, S.5
  • 20
    • 84862489540 scopus 로고    scopus 로고
    • Dynamic epigenetic enhancer signatures reveal key transcription factors associated with monocytic differentiation states
    • 22550342
    • Pham TH, Benner C, Lichtinger M, Schwarzfischer L, Hu Y, et al. (2012) Dynamic epigenetic enhancer signatures reveal key transcription factors associated with monocytic differentiation states. Blood119: e161–171. doi: 10.1182/blood-2012-01-402453 22550342
    • (2012) Blood , vol.119 , pp. e161-171
    • Pham, T.H.1    Benner, C.2    Lichtinger, M.3    Schwarzfischer, L.4    Hu, Y.5
  • 21
    • 84859993180 scopus 로고    scopus 로고
    • Conservation and divergence in toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages
    • Schroder K, Irvine KM, Taylor MS, Bokil NJ, Cao K-AL, et al. (2012) Conservation and divergence in toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages. Proc Natl AcadSci (USA)109: E944–953.
    • (2012) Proc Natl AcadSci (USA) , vol.109 , pp. E944-953
    • Schroder, K.1    Irvine, K.M.2    Taylor, M.S.3    Bokil, N.J.4    Cao, K.-A.L.5
  • 22
    • 33750813483 scopus 로고    scopus 로고
    • Transcriptional profiling of the human monocyte-to-macrophage differentiation and polarization: new molecules and patterns of gene expression
    • 17082649
    • Martinez FO, Gordon S, Locati M, Mantovani A, (2006) Transcriptional profiling of the human monocyte-to-macrophage differentiation and polarization: new molecules and patterns of gene expression. J Immunol177: 7303–7311. 17082649
    • (2006) J Immunol , vol.177 , pp. 7303-7311
    • Martinez, F.O.1    Gordon, S.2    Locati, M.3    Mantovani, A.4
  • 23
    • 84907483941 scopus 로고    scopus 로고
    • Epigenetic programming of monocyte-to-macrophage differentiation and trained innate immunity
    • 25258085
    • Saeed S, Quintin J, Kerstens HH, Rao NA, Aghajanirefah A, et al. (2014) Epigenetic programming of monocyte-to-macrophage differentiation and trained innate immunity. Science345: 1251086. doi: 10.1126/science.1251086 25258085
    • (2014) Science , vol.345 , pp. 1251086
    • Saeed, S.1    Quintin, J.2    Kerstens, H.H.3    Rao, N.A.4    Aghajanirefah, A.5
  • 24
    • 84865298775 scopus 로고    scopus 로고
    • Dissecting negative regulation of Toll-like receptor signaling
    • 22721918
    • Kondo T, Kawai T, Akira S, (2012) Dissecting negative regulation of Toll-like receptor signaling. Trends Immunol33: 449–458. doi: 10.1016/j.it.2012.05.002 22721918
    • (2012) Trends Immunol , vol.33 , pp. 449-458
    • Kondo, T.1    Kawai, T.2    Akira, S.3
  • 25
    • 22144464423 scopus 로고    scopus 로고
    • Inflammation suppressor genes: please switch out all the lights
    • 15774547
    • Wells CA, Ravasi T, Hume DA, (2005) Inflammation suppressor genes: please switch out all the lights. J Leukoc Biol78: 9–13. doi: 10.1189/jlb.1204710 15774547
    • (2005) J Leukoc Biol , vol.78 , pp. 9-13
    • Wells, C.A.1    Ravasi, T.2    Hume, D.A.3
  • 26
    • 0029890168 scopus 로고    scopus 로고
    • Endotoxin signal transduction in macrophages
    • 8699127
    • Sweet MJ, Hume DA, (1996) Endotoxin signal transduction in macrophages. J Leukoc Biol60: 8–26. 8699127
    • (1996) J Leukoc Biol , vol.60 , pp. 8-26
    • Sweet, M.J.1    Hume, D.A.2
  • 27
    • 77950343791 scopus 로고    scopus 로고
    • Pattern recognition receptors and inflammation
    • 20303872
    • Takeuchi O, Akira S, (2010) Pattern recognition receptors and inflammation. Cell140: 805–820. doi: 10.1016/j.cell.2010.01.022 20303872
    • (2010) Cell , vol.140 , pp. 805-820
    • Takeuchi, O.1    Akira, S.2
  • 28
    • 33646547951 scopus 로고    scopus 로고
    • Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4
    • 16688168
    • Gilchrist M, Thorsson V, Li B, Rust AG, Korb M, et al. (2006) Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4. Nature441: 173–178. doi: 10.1038/nature04768 16688168
    • (2006) Nature , vol.441 , pp. 173-178
    • Gilchrist, M.1    Thorsson, V.2    Li, B.3    Rust, A.G.4    Korb, M.5
  • 29
    • 84922998982 scopus 로고    scopus 로고
    • A dual cis-regulatory code links IRF8 to constitutive and inducible gene expression in macrophages
    • 25637355
    • Mancino A, Termanini A, Barozzi I, Ghisletti S, Ostuni R, et al. (2015) A dual cis-regulatory code links IRF8 to constitutive and inducible gene expression in macrophages. Genes Dev29: 394–408. doi: 10.1101/gad.257592.114 25637355
    • (2015) Genes Dev , vol.29 , pp. 394-408
    • Mancino, A.1    Termanini, A.2    Barozzi, I.3    Ghisletti, S.4    Ostuni, R.5
  • 30
    • 33646484899 scopus 로고    scopus 로고
    • Transcriptional network dynamics in macrophage activation
    • 16698233
    • Nilsson R, Bajic VB, Suzuki H, di Bernardo D, Bjorkegren J, et al. (2006) Transcriptional network dynamics in macrophage activation. Genomics88: 133–142. doi: 10.1016/j.ygeno.2006.03.022 16698233
    • (2006) Genomics , vol.88 , pp. 133-142
    • Nilsson, R.1    Bajic, V.B.2    Suzuki, H.3    di Bernardo, D.4    Bjorkegren, J.5
  • 31
    • 84881526410 scopus 로고    scopus 로고
    • Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription
    • 23932714
    • Kaikkonen MU, Spann NJ, Heinz S, Romanoski CE, Allison KA, et al. (2013) Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription. Mol Cell51: 310–325. doi: 10.1016/j.molcel.2013.07.010 23932714
    • (2013) Mol Cell , vol.51 , pp. 310-325
    • Kaikkonen, M.U.1    Spann, N.J.2    Heinz, S.3    Romanoski, C.E.4    Allison, K.A.5
  • 32
    • 84872522528 scopus 로고    scopus 로고
    • Latent enhancers activated by stimulation in differentiated cells
    • 23332752
    • Ostuni R, Piccolo V, Barozzi I, Polletti S, Termanini A, et al. (2013) Latent enhancers activated by stimulation in differentiated cells. Cell152: 157–171. doi: 10.1016/j.cell.2012.12.018 23332752
    • (2013) Cell , vol.152 , pp. 157-171
    • Ostuni, R.1    Piccolo, V.2    Barozzi, I.3    Polletti, S.4    Termanini, A.5
  • 33
    • 84908425487 scopus 로고    scopus 로고
    • Transcriptional control of inflammatory responses
    • 25213094
    • Smale ST, Natoli G, (2014) Transcriptional control of inflammatory responses. Cold Spring Harb Perspect Biol6: a016261. doi: 10.1101/cshperspect.a016261 25213094
    • (2014) Cold Spring Harb Perspect Biol , vol.6 , pp. a016261
    • Smale, S.T.1    Natoli, G.2
  • 34
    • 84897406127 scopus 로고    scopus 로고
    • A human gene expression atlas based upon promoter activity
    • 24670764
    • The FANTOM ConsortiumForrest A.R.R., et al. (2014) A human gene expression atlas based upon promoter activity. Nature507:462–470doi: 10.1038/nature13182 24670764
    • (2014) Nature , vol.507 , pp. 462-470
    • Forrest, A.R.R.1
  • 35
    • 84897459814 scopus 로고    scopus 로고
    • An atlas of active enhancers across human cell types and tissues
    • 24670763
    • Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, et al. (2014) An atlas of active enhancers across human cell types and tissues. Nature507: 455–461. doi: 10.1038/nature12787 24670763
    • (2014) Nature , vol.507 , pp. 455-461
    • Andersson, R.1    Gebhard, C.2    Miguel-Escalada, I.3    Hoof, I.4    Bornholdt, J.5
  • 36
    • 84899634847 scopus 로고    scopus 로고
    • Transcription and enhancer profiling in human monocyte subsets
    • 24671955
    • Schmidl C, Renner K, Peter K, Eder R, Lassmann T, et al. (2014) Transcription and enhancer profiling in human monocyte subsets. Blood123: e90–99. doi: 10.1182/blood-2013-02-484188 24671955
    • (2014) Blood , vol.123 , pp. e90-99
    • Schmidl, C.1    Renner, K.2    Peter, K.3    Eder, R.4    Lassmann, T.5
  • 37
    • 84923796255 scopus 로고    scopus 로고
    • Gene regulation. Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
    • 25678556
    • Arner E, Daub CO, Vitting-Seerup K, Andersson R, Lilje B, et al. (2015) Gene regulation. Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells. Science347: 1010–1014. doi: 10.1126/science.1259418 25678556
    • (2015) Science , vol.347 , pp. 1010-1014
    • Arner, E.1    Daub, C.O.2    Vitting-Seerup, K.3    Andersson, R.4    Lilje, B.5
  • 38
    • 84929208111 scopus 로고    scopus 로고
    • Transcription factor, promoter, and enhancer utilization in human myeloid cells
    • Joshi A, Pooley C, Freeman TC, Lennartsson A, Babina M, et al. (2015) Transcription factor, promoter, and enhancer utilization in human myeloid cells. J Leukoc Biol. 97:985–995
    • (2015) J Leukoc Biol , vol.97 , pp. 985-995
    • Joshi, A.1    Pooley, C.2    Freeman, T.C.3    Lennartsson, A.4    Babina, M.5
  • 39
    • 73349116606 scopus 로고    scopus 로고
    • Network visualization and analysis of gene expression data using BioLayout Express(3D)
    • 19798086
    • Theocharidis A, van Dongen S, Enright AJ, Freeman TC, (2009) Network visualization and analysis of gene expression data using BioLayout Express(3D). Nat Protoc4: 1535–1550. doi: 10.1038/nprot.2009.177 19798086
    • (2009) Nat Protoc , vol.4 , pp. 1535-1550
    • Theocharidis, A.1    van Dongen, S.2    Enright, A.J.3    Freeman, T.C.4
  • 40
    • 3142581432 scopus 로고    scopus 로고
    • Regulation of Toll/IL-1-receptor-mediated gene expression by the inducible nuclear protein IkappaBzeta
    • 15241416
    • Yamamoto M, Yamazaki S, Uematsu S, Sato S, Hemmi H, et al. (2004) Regulation of Toll/IL-1-receptor-mediated gene expression by the inducible nuclear protein IkappaBzeta. Nature430: 218–222. doi: 10.1038/nature02738 15241416
    • (2004) Nature , vol.430 , pp. 218-222
    • Yamamoto, M.1    Yamazaki, S.2    Uematsu, S.3    Sato, S.4    Hemmi, H.5
  • 41
    • 84911473747 scopus 로고    scopus 로고
    • Akirin2 is critical for inducing inflammatory genes by bridging IkappaB-zeta and the SWI/SNF complex
    • 25107474
    • Tartey S, Matsushita K, Vandenbon A, Ori D, Imamura T, et al. (2014) Akirin2 is critical for inducing inflammatory genes by bridging IkappaB-zeta and the SWI/SNF complex. EMBO J33: 2332–2348. doi: 10.15252/embj.201488447 25107474
    • (2014) EMBO J , vol.33 , pp. 2332-2348
    • Tartey, S.1    Matsushita, K.2    Vandenbon, A.3    Ori, D.4    Imamura, T.5
  • 42
    • 33646469353 scopus 로고    scopus 로고
    • Cutting edge: apoptosis-regulating signal kinase 1 is required for reactive oxygen species-mediated activation of IFN regulatory factor 3 by lipopolysaccharide
    • 16670275
    • Chiang E, Dang O, Anderson K, Matsuzawa A, Ichijo H, et al. (2006) Cutting edge: apoptosis-regulating signal kinase 1 is required for reactive oxygen species-mediated activation of IFN regulatory factor 3 by lipopolysaccharide. J Immunol176: 5720–5724. 16670275
    • (2006) J Immunol , vol.176 , pp. 5720-5724
    • Chiang, E.1    Dang, O.2    Anderson, K.3    Matsuzawa, A.4    Ichijo, H.5
  • 43
    • 23844535092 scopus 로고    scopus 로고
    • Early growth response proteins EGR-4 and EGR-3 interact with immune inflammatory mediators NF-kappaB p50 and p65
    • 16014385
    • Wieland GD, Nehmann N, Muller D, Eibel H, Siebenlist U, et al. (2005) Early growth response proteins EGR-4 and EGR-3 interact with immune inflammatory mediators NF-kappaB p50 and p65. J Cell Sci118: 3203–3212. doi: 10.1242/jcs.02445 16014385
    • (2005) J Cell Sci , vol.118 , pp. 3203-3212
    • Wieland, G.D.1    Nehmann, N.2    Muller, D.3    Eibel, H.4    Siebenlist, U.5
  • 44
    • 56149122030 scopus 로고    scopus 로고
    • CD137 induces proliferation of murine hematopoietic progenitor cells and differentiation to macrophages
    • 18768847
    • Jiang D, Chen Y, Schwarz H, (2008) CD137 induces proliferation of murine hematopoietic progenitor cells and differentiation to macrophages. J Immunol181: 3923–3932. 18768847
    • (2008) J Immunol , vol.181 , pp. 3923-3932
    • Jiang, D.1    Chen, Y.2    Schwarz, H.3
  • 45
    • 84864770285 scopus 로고    scopus 로고
    • The small MAF transcription factors MAFF, MAFG and MAFK: current knowledge and perspectives
    • 22721719
    • Kannan MB, Solovieva V, Blank V, (2012) The small MAF transcription factors MAFF, MAFG and MAFK: current knowledge and perspectives. Biochim Biophys Acta1823: 1841–1846. doi: 10.1016/j.bbamcr.2012.06.012 22721719
    • (2012) Biochim Biophys Acta , vol.1823 , pp. 1841-1846
    • Kannan, M.B.1    Solovieva, V.2    Blank, V.3
  • 46
    • 33745484802 scopus 로고    scopus 로고
    • Analysis of significance patterns identifies ubiquitous and disease-specific gene-expression signatures in patient peripheral blood leukocytes
    • 16461797
    • Chaussabel D, Allman W, Mejias A, Chung W, Bennett L, et al. (2005) Analysis of significance patterns identifies ubiquitous and disease-specific gene-expression signatures in patient peripheral blood leukocytes. Ann N Y Acad Sci1062: 146–154. doi: 10.1196/annals.1358.017 16461797
    • (2005) Ann N Y Acad Sci , vol.1062 , pp. 146-154
    • Chaussabel, D.1    Allman, W.2    Mejias, A.3    Chung, W.4    Bennett, L.5
  • 47
    • 84896742056 scopus 로고    scopus 로고
    • Innate immune activity conditions the effect of regulatory variants upon monocyte gene expression
    • 24604202
    • Fairfax BP, Humburg P, Makino S, Naranbhai V, Wong D, et al. (2014) Innate immune activity conditions the effect of regulatory variants upon monocyte gene expression. Science343: 1246949. doi: 10.1126/science.1246949 24604202
    • (2014) Science , vol.343 , pp. 1246949
    • Fairfax, B.P.1    Humburg, P.2    Makino, S.3    Naranbhai, V.4    Wong, D.5
  • 48
    • 33847408050 scopus 로고    scopus 로고
    • Gene expression patterns in blood leukocytes discriminate patients with acute infections
    • 17105821
    • Ramilo O, Allman W, Chung W, Mejias A, Ardura M, et al. (2007) Gene expression patterns in blood leukocytes discriminate patients with acute infections. Blood109: 2066–2077. doi: 10.1182/blood-2006-02-002477 17105821
    • (2007) Blood , vol.109 , pp. 2066-2077
    • Ramilo, O.1    Allman, W.2    Chung, W.3    Mejias, A.4    Ardura, M.5
  • 49
    • 84873404949 scopus 로고    scopus 로고
    • The interferon signature in autoimmune diseases
    • 23249830
    • Ronnblom L, Eloranta ML, (2013) The interferon signature in autoimmune diseases. Curr Opin Rheumatol25: 248–253. doi: 10.1097/BOR.0b013e32835c7e32 23249830
    • (2013) Curr Opin Rheumatol , vol.25 , pp. 248-253
    • Ronnblom, L.1    Eloranta, M.L.2
  • 50
    • 84907529065 scopus 로고    scopus 로고
    • An essential role for IFN-beta in the induction of IFN-stimulated gene expression by LPS in macrophages
    • 25024400
    • Sheikh F, Dickensheets H, Gamero AM, Vogel SN, Donnelly RP, (2014) An essential role for IFN-beta in the induction of IFN-stimulated gene expression by LPS in macrophages. J Leukoc Biol96: 591–600. doi: 10.1189/jlb.2A0414-191R 25024400
    • (2014) J Leukoc Biol , vol.96 , pp. 591-600
    • Sheikh, F.1    Dickensheets, H.2    Gamero, A.M.3    Vogel, S.N.4    Donnelly, R.P.5
  • 51
    • 84876575052 scopus 로고    scopus 로고
    • Interferome v2.0: an updated database of annotated interferon-regulated genes
    • 23203888
    • Rusinova I, Forster S, Yu S, Kannan A, Masse M, et al. (2013) Interferome v2.0: an updated database of annotated interferon-regulated genes. Nucleic Acids Res41: D1040–1046. doi: 10.1093/nar/gks1215 23203888
    • (2013) Nucleic Acids Res , vol.41 , pp. D1040-1046
    • Rusinova, I.1    Forster, S.2    Yu, S.3    Kannan, A.4    Masse, M.5
  • 52
    • 84934321364 scopus 로고    scopus 로고
    • Respiratory syncytial virus infection of primary human mast cells induces the selective production of type I interferons, CXCL10, and CCL4
    • 25819983
    • Al-Afif A, Alyazidi R, Oldford SA, Huang YY, King CA, et al. (2015) Respiratory syncytial virus infection of primary human mast cells induces the selective production of type I interferons, CXCL10, and CCL4. J Allergy Clin Immunol. 136:1346–1354doi: 10.1016/j.jaci.2015.01.042 25819983
    • (2015) J Allergy Clin Immunol , vol.136 , pp. 1346-1354
    • Al-Afif, A.1    Alyazidi, R.2    Oldford, S.A.3    Huang, Y.Y.4    King, C.A.5
  • 53
    • 0036850946 scopus 로고    scopus 로고
    • SOCS1/JAB is a negative regulator of LPS-induced macrophage activation
    • 12433365
    • Kinjyo I, Hanada T, Inagaki-Ohara K, Mori H, Aki D, et al. (2002) SOCS1/JAB is a negative regulator of LPS-induced macrophage activation. Immunity17: 583–591. 12433365
    • (2002) Immunity , vol.17 , pp. 583-591
    • Kinjyo, I.1    Hanada, T.2    Inagaki-Ohara, K.3    Mori, H.4    Aki, D.5
  • 54
    • 80053210241 scopus 로고    scopus 로고
    • Suppressor of cytokine signaling (SOCS) 1 inhibits type I interferon (IFN) signaling via the interferon alpha receptor (IFNAR1)-associated tyrosine kinase Tyk2
    • 21757742
    • Piganis RA, De Weerd NA, Gould JA, Schindler CW, Mansell A, et al. (2011) Suppressor of cytokine signaling (SOCS) 1 inhibits type I interferon (IFN) signaling via the interferon alpha receptor (IFNAR1)-associated tyrosine kinase Tyk2. J Biol Chem286: 33811–33818. doi: 10.1074/jbc.M111.270207 21757742
    • (2011) J Biol Chem , vol.286 , pp. 33811-33818
    • Piganis, R.A.1    De Weerd, N.A.2    Gould, J.A.3    Schindler, C.W.4    Mansell, A.5
  • 55
    • 84941755669 scopus 로고    scopus 로고
    • Microbial sensing by Toll-like receptors and intracellular nucleic acid sensors
    • Pandey S, Kawai T, Akira S, (2015) Microbial sensing by Toll-like receptors and intracellular nucleic acid sensors. Cold Spring Harb Perspect Biol7: a016246.
    • (2015) Cold Spring Harb Perspect Biol , vol.7 , pp. a016246
    • Pandey, S.1    Kawai, T.2    Akira, S.3
  • 56
    • 84884355522 scopus 로고    scopus 로고
    • Synergistic activation of inflammatory cytokine genes by interferon-gamma-induced chromatin remodeling and toll-like receptor signaling
    • 24012417
    • Qiao Y, Giannopoulou EG, Chan CH, Park SH, Gong S, et al. (2013) Synergistic activation of inflammatory cytokine genes by interferon-gamma-induced chromatin remodeling and toll-like receptor signaling. Immunity39: 454–469. doi: 10.1016/j.immuni.2013.08.009 24012417
    • (2013) Immunity , vol.39 , pp. 454-469
    • Qiao, Y.1    Giannopoulou, E.G.2    Chan, C.H.3    Park, S.H.4    Gong, S.5
  • 57
    • 84937934040 scopus 로고    scopus 로고
    • A draft network of ligand-receptor-mediated multicellular signalling in human
    • 26198319
    • Ramilowski JA, Goldberg T, Harshbarger J, Kloppman E, Lizio M, et al. (2015) A draft network of ligand-receptor-mediated multicellular signalling in human. Nat Commun6: 7866. doi: 10.1038/ncomms8866 26198319
    • (2015) Nat Commun , vol.6 , pp. 7866
    • Ramilowski, J.A.1    Goldberg, T.2    Harshbarger, J.3    Kloppman, E.4    Lizio, M.5
  • 58
    • 40949123747 scopus 로고    scopus 로고
    • TNF activates an IRF1-dependent autocrine loop leading to sustained expression of chemokines and STAT1-dependent type I interferon-response genes
    • 18345002
    • Yarilina A, Park-Min KH, Antoniv T, Hu X, Ivashkiv LB, (2008) TNF activates an IRF1-dependent autocrine loop leading to sustained expression of chemokines and STAT1-dependent type I interferon-response genes. Nat Immunol9: 378–387. doi: 10.1038/ni1576 18345002
    • (2008) Nat Immunol , vol.9 , pp. 378-387
    • Yarilina, A.1    Park-Min, K.H.2    Antoniv, T.3    Hu, X.4    Ivashkiv, L.B.5
  • 59
    • 84896504991 scopus 로고    scopus 로고
    • The transcriptional repressor BLIMP1 curbs host defenses by suppressing expression of the chemokine CCL8
    • 24477914
    • Severa M, Islam SA, Waggoner SN, Jiang Z, Kim ND, et al. (2014) The transcriptional repressor BLIMP1 curbs host defenses by suppressing expression of the chemokine CCL8. J Immunol192: 2291–2304. doi: 10.4049/jimmunol.1301799 24477914
    • (2014) J Immunol , vol.192 , pp. 2291-2304
    • Severa, M.1    Islam, S.A.2    Waggoner, S.N.3    Jiang, Z.4    Kim, N.D.5
  • 60
    • 84892634483 scopus 로고    scopus 로고
    • Switching of the relative dominance between feedback mechanisms in lipopolysaccharide-induced NF-kappaB signaling
    • 24425788
    • Sung MH, Li N, Lao Q, Gottschalk RA, Hager GL, et al. (2014) Switching of the relative dominance between feedback mechanisms in lipopolysaccharide-induced NF-kappaB signaling. Sci Signal7: ra6. doi: 10.1126/scisignal.2004764 24425788
    • (2014) Sci Signal , vol.7 , pp. ra6
    • Sung, M.H.1    Li, N.2    Lao, Q.3    Gottschalk, R.A.4    Hager, G.L.5
  • 61
    • 84885018609 scopus 로고    scopus 로고
    • Systematic identification of trans eQTLs as putative drivers of known disease associations
    • 24013639
    • Westra HJ, Peters MJ, Esko T, Yaghootkar H, Schurmann C, et al. (2013) Systematic identification of trans eQTLs as putative drivers of known disease associations. Nat Genet45: 1238–1243. doi: 10.1038/ng.2756 24013639
    • (2013) Nat Genet , vol.45 , pp. 1238-1243
    • Westra, H.J.1    Peters, M.J.2    Esko, T.3    Yaghootkar, H.4    Schurmann, C.5
  • 62
    • 84903441668 scopus 로고    scopus 로고
    • Translational regulation of specific mRNAs controls feedback inhibition and survival during macrophage activation
    • 24945926
    • Schott J, Reitter S, Philipp J, Haneke K, Schafer H, et al. (2014) Translational regulation of specific mRNAs controls feedback inhibition and survival during macrophage activation. PLoS Genet10: e1004368. doi: 10.1371/journal.pgen.1004368 24945926
    • (2014) PLoS Genet , vol.10 , pp. e1004368
    • Schott, J.1    Reitter, S.2    Philipp, J.3    Haneke, K.4    Schafer, H.5
  • 63
    • 33751566645 scopus 로고    scopus 로고
    • DUSP meet immunology: dual specificity MAPK phosphatases in control of the inflammatory response
    • 17114416
    • Lang R, Hammer M, Mages J, (2006) DUSP meet immunology: dual specificity MAPK phosphatases in control of the inflammatory response. J Immunol177: 7497–7504. 17114416
    • (2006) J Immunol , vol.177 , pp. 7497-7504
    • Lang, R.1    Hammer, M.2    Mages, J.3
  • 64
    • 84934442144 scopus 로고    scopus 로고
    • Gadd45 proteins in immunity
    • 24104473
    • Schmitz I, (2013) Gadd45 proteins in immunity. Adv Exp Med Biol793: 51–68. doi: 10.1007/978-1-4614-8289-5_4 24104473
    • (2013) Adv Exp Med Biol , vol.793 , pp. 51-68
    • Schmitz, I.1
  • 65
    • 84897504553 scopus 로고    scopus 로고
    • Phosphatase holoenzyme PP1/GADD34 negatively regulates TLR response by inhibiting TAK1 serine 412 phosphorylation
    • 24534530
    • Gu M, Ouyang C, Lin W, Zhang T, Cao X, et al. (2014) Phosphatase holoenzyme PP1/GADD34 negatively regulates TLR response by inhibiting TAK1 serine 412 phosphorylation. J Immunol192: 2846–2856. doi: 10.4049/jimmunol.1302537 24534530
    • (2014) J Immunol , vol.192 , pp. 2846-2856
    • Gu, M.1    Ouyang, C.2    Lin, W.3    Zhang, T.4    Cao, X.5
  • 66
    • 32944462300 scopus 로고    scopus 로고
    • Rapid alteration of microRNA levels by histone deacetylase inhibition
    • 16452179
    • Scott GK, Mattie MD, Berger CE, Benz SC, Benz CC, (2006) Rapid alteration of microRNA levels by histone deacetylase inhibition. Cancer Res66: 1277–1281. doi: 10.1158/0008-5472.CAN-05-3632 16452179
    • (2006) Cancer Res , vol.66 , pp. 1277-1281
    • Scott, G.K.1    Mattie, M.D.2    Berger, C.E.3    Benz, S.C.4    Benz, C.C.5
  • 67
    • 60749124122 scopus 로고    scopus 로고
    • The stability of mRNA influences the temporal order of the induction of genes encoding inflammatory molecules
    • 19198593
    • Hao S, Baltimore D, (2009) The stability of mRNA influences the temporal order of the induction of genes encoding inflammatory molecules. Nat Immunol10: 281–288. doi: 10.1038/ni.1699 19198593
    • (2009) Nat Immunol , vol.10 , pp. 281-288
    • Hao, S.1    Baltimore, D.2
  • 68
    • 84937027929 scopus 로고    scopus 로고
    • Functional regulation of Zfp36l1 and Zfp36l2 in response to lipopolysaccharide in mouse RAW264.7 macrophages
    • Wang KT, Wang HH, Wu YY, Su YL, Chiang PY, et al. (2015) Functional regulation of Zfp36l1 and Zfp36l2 in response to lipopolysaccharide in mouse RAW264.7 macrophages. J Inflamm (Lond)12: 42.
    • (2015) J Inflamm (Lond) , vol.12 , pp. 42
    • Wang, K.T.1    Wang, H.H.2    Wu, Y.Y.3    Su, Y.L.4    Chiang, P.Y.5
  • 69
    • 67349167059 scopus 로고    scopus 로고
    • Zc3h12a is an RNase essential for controlling immune responses by regulating mRNA decay
    • 19322177
    • Matsushita K, Takeuchi O, Standley DM, Kumagai Y, Kawagoe T, et al. (2009) Zc3h12a is an RNase essential for controlling immune responses by regulating mRNA decay. Nature458: 1185–1190. doi: 10.1038/nature07924 19322177
    • (2009) Nature , vol.458 , pp. 1185-1190
    • Matsushita, K.1    Takeuchi, O.2    Standley, D.M.3    Kumagai, Y.4    Kawagoe, T.5
  • 70
    • 84915747021 scopus 로고    scopus 로고
    • PARP-14 combines with tristetraprolin in the selective posttranscriptional control of macrophage tissue factor expression
    • 25293769
    • Iqbal MB, Johns M, Cao J, Liu Y, Yu SC, et al. (2014) PARP-14 combines with tristetraprolin in the selective posttranscriptional control of macrophage tissue factor expression. Blood124: 3646–3655. doi: 10.1182/blood-2014-07-588046 25293769
    • (2014) Blood , vol.124 , pp. 3646-3655
    • Iqbal, M.B.1    Johns, M.2    Cao, J.3    Liu, Y.4    Yu, S.C.5
  • 71
    • 84903315080 scopus 로고    scopus 로고
    • DTX3L and ARTD9 inhibit IRF1 expression and mediate in cooperation with ARTD8 survival and proliferation of metastatic prostate cancer cells
    • 24886089
    • Bachmann SB, Frommel SC, Camicia R, Winkler HC, Santoro R, et al. (2014) DTX3L and ARTD9 inhibit IRF1 expression and mediate in cooperation with ARTD8 survival and proliferation of metastatic prostate cancer cells. Mol Cancer13: 125. doi: 10.1186/1476-4598-13-125 24886089
    • (2014) Mol Cancer , vol.13 , pp. 125
    • Bachmann, S.B.1    Frommel, S.C.2    Camicia, R.3    Winkler, H.C.4    Santoro, R.5
  • 72
    • 84893442958 scopus 로고    scopus 로고
    • Interferon-stimulated poly(ADP-Ribose) polymerases are potent inhibitors of cellular translation and virus replication
    • 24335297
    • Atasheva S, Frolova EI, Frolov I, (2014) Interferon-stimulated poly(ADP-Ribose) polymerases are potent inhibitors of cellular translation and virus replication. J Virol88: 2116–2130. doi: 10.1128/JVI.03443-13 24335297
    • (2014) J Virol , vol.88 , pp. 2116-2130
    • Atasheva, S.1    Frolova, E.I.2    Frolov, I.3
  • 73
    • 84877724803 scopus 로고    scopus 로고
    • Regulation of NF-kappaB signalling by the mono-ADP-ribosyltransferase ARTD10
    • 23575687
    • Verheugd P, Forst AH, Milke L, Herzog N, Feijs KL, et al. (2013) Regulation of NF-kappaB signalling by the mono-ADP-ribosyltransferase ARTD10. Nat Commun4: 1683. doi: 10.1038/ncomms2672 23575687
    • (2013) Nat Commun , vol.4 , pp. 1683
    • Verheugd, P.1    Forst, A.H.2    Milke, L.3    Herzog, N.4    Feijs, K.L.5
  • 74
    • 84883406297 scopus 로고    scopus 로고
    • Two phases of inflammatory mediator production defined by the study of IRAK2 and IRAK1 knock-in mice
    • 23918981
    • Pauls E, Nanda SK, Smith H, Toth R, Arthur JS, et al. (2013) Two phases of inflammatory mediator production defined by the study of IRAK2 and IRAK1 knock-in mice. J Immunol191: 2717–2730. doi: 10.4049/jimmunol.1203268 23918981
    • (2013) J Immunol , vol.191 , pp. 2717-2730
    • Pauls, E.1    Nanda, S.K.2    Smith, H.3    Toth, R.4    Arthur, J.S.5
  • 75
    • 84939478111 scopus 로고    scopus 로고
    • Optineurin deficiency in mice contributes to impaired cytokine secretion and neutrophil recruitment in bacteria-driven colitis
    • 26044960
    • Chew TS, O'Shea NR, Sewell GW, Oehlers SH, Mulvey CM, et al. (2015) Optineurin deficiency in mice contributes to impaired cytokine secretion and neutrophil recruitment in bacteria-driven colitis. Dis Model Mech8: 817–829. doi: 10.1242/dmm.020362 26044960
    • (2015) Dis Model Mech , vol.8 , pp. 817-829
    • Chew, T.S.1    O'Shea, N.R.2    Sewell, G.W.3    Oehlers, S.H.4    Mulvey, C.M.5
  • 76
    • 84892449521 scopus 로고    scopus 로고
    • Activation of Gpr109a, receptor for niacin and the commensal metabolite butyrate, suppresses colonic inflammation and carcinogenesis
    • 24412617
    • Singh N, Gurav A, Sivaprakasam S, Brady E, Padia R, et al. (2014) Activation of Gpr109a, receptor for niacin and the commensal metabolite butyrate, suppresses colonic inflammation and carcinogenesis. Immunity40: 128–139. doi: 10.1016/j.immuni.2013.12.007 24412617
    • (2014) Immunity , vol.40 , pp. 128-139
    • Singh, N.1    Gurav, A.2    Sivaprakasam, S.3    Brady, E.4    Padia, R.5
  • 77
    • 70349472923 scopus 로고    scopus 로고
    • Peli1 facilitates TRIF-dependent Toll-like receptor signaling and proinflammatory cytokine production
    • 19734906
    • Chang M, Jin W, Sun SC, (2009) Peli1 facilitates TRIF-dependent Toll-like receptor signaling and proinflammatory cytokine production. Nat Immunol10: 1089–1095. doi: 10.1038/ni.1777 19734906
    • (2009) Nat Immunol , vol.10 , pp. 1089-1095
    • Chang, M.1    Jin, W.2    Sun, S.C.3
  • 78
    • 77951290227 scopus 로고    scopus 로고
    • TLR activation of the transcription factor XBP1 regulates innate immune responses in macrophages
    • 20351694
    • Martinon F, Chen X, Lee AH, Glimcher LH, (2010) TLR activation of the transcription factor XBP1 regulates innate immune responses in macrophages. Nat Immunol11: 411–418. doi: 10.1038/ni.1857 20351694
    • (2010) Nat Immunol , vol.11 , pp. 411-418
    • Martinon, F.1    Chen, X.2    Lee, A.H.3    Glimcher, L.H.4
  • 79
    • 79953288480 scopus 로고    scopus 로고
    • Selective inhibition of a regulatory subunit of protein phosphatase 1 restores proteostasis
    • 21385720
    • Tsaytler P, Harding HP, Ron D, Bertolotti A, (2011) Selective inhibition of a regulatory subunit of protein phosphatase 1 restores proteostasis. Science332: 91–94. doi: 10.1126/science.1201396 21385720
    • (2011) Science , vol.332 , pp. 91-94
    • Tsaytler, P.1    Harding, H.P.2    Ron, D.3    Bertolotti, A.4
  • 80
    • 0031867572 scopus 로고    scopus 로고
    • Characterization of ABF-1, a novel basic helix-loop-helix transcription factor expressed in activated B lymphocytes
    • 9584154
    • Massari ME, Rivera RR, Voland JR, Quong MW, Breit TM, et al. (1998) Characterization of ABF-1, a novel basic helix-loop-helix transcription factor expressed in activated B lymphocytes. Mol Cell Biol18: 3130–3139. 9584154
    • (1998) Mol Cell Biol , vol.18 , pp. 3130-3139
    • Massari, M.E.1    Rivera, R.R.2    Voland, J.R.3    Quong, M.W.4    Breit, T.M.5
  • 81
    • 76249101651 scopus 로고    scopus 로고
    • Elevated mitochondrial reactive oxygen species generation affects the immune response via hypoxia-inducible factor-1alpha in long-lived Mclk1+/- mouse mutants
    • 20007531
    • Wang D, Malo D, Hekimi S, (2010) Elevated mitochondrial reactive oxygen species generation affects the immune response via hypoxia-inducible factor-1alpha in long-lived Mclk1+/- mouse mutants. J Immunol184: 582–590. doi: 10.4049/jimmunol.0902352 20007531
    • (2010) J Immunol , vol.184 , pp. 582-590
    • Wang, D.1    Malo, D.2    Hekimi, S.3
  • 82
    • 84921605360 scopus 로고    scopus 로고
    • Genetic analysis of the pathogenic molecular sub-phenotype interferon-alpha identifies multiple novel loci involved in systemic lupus erythematosus
    • 25338677
    • Kariuki SN, Ghodke-Puranik Y, Dorschner JM, Chrabot BS, Kelly JA, et al. (2015) Genetic analysis of the pathogenic molecular sub-phenotype interferon-alpha identifies multiple novel loci involved in systemic lupus erythematosus. Genes Immun16: 15–23. doi: 10.1038/gene.2014.57 25338677
    • (2015) Genes Immun , vol.16 , pp. 15-23
    • Kariuki, S.N.1    Ghodke-Puranik, Y.2    Dorschner, J.M.3    Chrabot, B.S.4    Kelly, J.A.5
  • 83
    • 84893442028 scopus 로고    scopus 로고
    • EBI2 is a negative regulator of type I interferons in plasmacytoid and myeloid dendritic cells
    • 24386204
    • Chiang EY, Johnston RJ, Grogan JL, (2013) EBI2 is a negative regulator of type I interferons in plasmacytoid and myeloid dendritic cells. PLoS One8: e83457. doi: 10.1371/journal.pone.0083457 24386204
    • (2013) PLoS One , vol.8 , pp. e83457
    • Chiang, E.Y.1    Johnston, R.J.2    Grogan, J.L.3
  • 84
    • 84874232263 scopus 로고    scopus 로고
    • ZIP8 regulates host defense through zinc-mediated inhibition of NF-kappaB
    • 23403290
    • Liu MJ, Bao S, Galvez-Peralta M, Pyle CJ, Rudawsky AC, et al. (2013) ZIP8 regulates host defense through zinc-mediated inhibition of NF-kappaB. Cell Rep3: 386–400. doi: 10.1016/j.celrep.2013.01.009 23403290
    • (2013) Cell Rep , vol.3 , pp. 386-400
    • Liu, M.J.1    Bao, S.2    Galvez-Peralta, M.3    Pyle, C.J.4    Rudawsky, A.C.5
  • 85
    • 84897446230 scopus 로고    scopus 로고
    • Enhancer RNAs and regulated transcriptional programs
    • 24674738
    • Lam MT, Li W, Rosenfeld MG, Glass CK, (2014) Enhancer RNAs and regulated transcriptional programs. Trends Biochem Sci39: 170–182. doi: 10.1016/j.tibs.2014.02.007 24674738
    • (2014) Trends Biochem Sci , vol.39 , pp. 170-182
    • Lam, M.T.1    Li, W.2    Rosenfeld, M.G.3    Glass, C.K.4
  • 86
    • 84928942103 scopus 로고    scopus 로고
    • RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity
    • 25957685
    • Pefanis E, Wang J, Rothschild G, Lim J, Kazadi D, et al. (2015) RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity. Cell161: 774–789. doi: 10.1016/j.cell.2015.04.034 25957685
    • (2015) Cell , vol.161 , pp. 774-789
    • Pefanis, E.1    Wang, J.2    Rothschild, G.3    Lim, J.4    Kazadi, D.5
  • 87
    • 84902286789 scopus 로고    scopus 로고
    • Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes
    • 24909122
    • NE II, Heward JA, Roux B, Tsitsiou E, Fenwick PS, et al. (2014) Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes. Nat Commun5: 3979. doi: 10.1038/ncomms4979 24909122
    • (2014) Nat Commun , vol.5 , pp. 3979
    • Ne, I.I.1    Heward, J.A.2    Roux, B.3    Tsitsiou, E.4    Fenwick, P.S.5
  • 88
    • 65149083962 scopus 로고    scopus 로고
    • The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
    • 19377474
    • Suzuki H, Forrest AR, van Nimwegen E, Daub CO, Balwierz PJ, et al. (2009) The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nat Genet41: 553–562. doi: 10.1038/ng.375 19377474
    • (2009) Nat Genet , vol.41 , pp. 553-562
    • Suzuki, H.1    Forrest, A.R.2    van Nimwegen, E.3    Daub, C.O.4    Balwierz, P.J.5
  • 89
    • 84920724792 scopus 로고    scopus 로고
    • Environment drives selection and function of enhancers controlling tissue-specific macrophage identities
    • 25480297
    • Gosselin D, Link VM, Romanoski CE, Fonseca GJ, Eichenfield DZ, et al. (2014) Environment drives selection and function of enhancers controlling tissue-specific macrophage identities. Cell159: 1327–1340. doi: 10.1016/j.cell.2014.11.023 25480297
    • (2014) Cell , vol.159 , pp. 1327-1340
    • Gosselin, D.1    Link, V.M.2    Romanoski, C.E.3    Fonseca, G.J.4    Eichenfield, D.Z.5
  • 90
    • 84895523335 scopus 로고    scopus 로고
    • Architecture and expression of the nfatc1 gene in lymphocytes
    • 24550910
    • Rudolf R, Busch R, Patra AK, Muhammad K, Avots A, et al. (2014) Architecture and expression of the nfatc1 gene in lymphocytes. Front Immunol5: 21. doi: 10.3389/fimmu.2014.00021 24550910
    • (2014) Front Immunol , vol.5 , pp. 21
    • Rudolf, R.1    Busch, R.2    Patra, A.K.3    Muhammad, K.4    Avots, A.5
  • 91
    • 77956705117 scopus 로고    scopus 로고
    • Dual roles for MEF2A and MEF2D during human macrophage terminal differentiation and c-Jun expression
    • 20590529
    • Aude-Garcia C, Collin-Faure V, Bausinger H, Hanau D, Rabilloud T, et al. (2010) Dual roles for MEF2A and MEF2D during human macrophage terminal differentiation and c-Jun expression. Biochem J430: 237–244. doi: 10.1042/BJ20100131 20590529
    • (2010) Biochem J , vol.430 , pp. 237-244
    • Aude-Garcia, C.1    Collin-Faure, V.2    Bausinger, H.3    Hanau, D.4    Rabilloud, T.5
  • 92
    • 84938504101 scopus 로고    scopus 로고
    • Myocyte enhancer factor 2C regulation of hepatocellular carcinoma via vascular endothelial growth factor and Wnt/beta-catenin signaling
    • 25328135
    • Bai XL, Zhang Q, Ye LY, Liang F, Sun X, et al. (2015) Myocyte enhancer factor 2C regulation of hepatocellular carcinoma via vascular endothelial growth factor and Wnt/beta-catenin signaling. Oncogene34: 4089–4097. doi: 10.1038/onc.2014.337 25328135
    • (2015) Oncogene , vol.34 , pp. 4089-4097
    • Bai, X.L.1    Zhang, Q.2    Ye, L.Y.3    Liang, F.4    Sun, X.5
  • 93
    • 79251589340 scopus 로고    scopus 로고
    • Serum response factor utilizes distinct promoter- and enhancer-based mechanisms to regulate cytoskeletal gene expression in macrophages
    • 21135125
    • Sullivan AL, Benner C, Heinz S, Huang W, Xie L, et al. (2011) Serum response factor utilizes distinct promoter- and enhancer-based mechanisms to regulate cytoskeletal gene expression in macrophages. Mol Cell Biol31: 861–875. doi: 10.1128/MCB.00836-10 21135125
    • (2011) Mol Cell Biol , vol.31 , pp. 861-875
    • Sullivan, A.L.1    Benner, C.2    Heinz, S.3    Huang, W.4    Xie, L.5
  • 94
    • 0031748892 scopus 로고    scopus 로고
    • Involvement of Ets, rel and Sp1-like proteins in lipopolysaccharide-mediated activation of the HIV-1 LTR in macrophages
    • 9656143
    • Sweet MJ, Stacey KJ, Ross IL, Ostrowski MC, Hume DA, (1998) Involvement of Ets, rel and Sp1-like proteins in lipopolysaccharide-mediated activation of the HIV-1 LTR in macrophages. J Inflamm48: 67–83. 9656143
    • (1998) J Inflamm , vol.48 , pp. 67-83
    • Sweet, M.J.1    Stacey, K.J.2    Ross, I.L.3    Ostrowski, M.C.4    Hume, D.A.5
  • 95
    • 79960021457 scopus 로고    scopus 로고
    • Kruppel-like factor 4 regulates macrophage polarization
    • 21670502
    • Liao X, Sharma N, Kapadia F, Zhou G, Lu Y, et al. (2011) Kruppel-like factor 4 regulates macrophage polarization. J Clin Invest121: 2736–2749. doi: 10.1172/JCI45444 21670502
    • (2011) J Clin Invest , vol.121 , pp. 2736-2749
    • Liao, X.1    Sharma, N.2    Kapadia, F.3    Zhou, G.4    Lu, Y.5
  • 96
    • 84898627011 scopus 로고    scopus 로고
    • Kruppel-like transcription factor 6 regulates inflammatory macrophage polarization
    • 24385430
    • Date D, Das R, Narla G, Simon DI, Jain MK, et al. (2014) Kruppel-like transcription factor 6 regulates inflammatory macrophage polarization. J Biol Chem289: 10318–10329. doi: 10.1074/jbc.M113.526749 24385430
    • (2014) J Biol Chem , vol.289 , pp. 10318-10329
    • Date, D.1    Das, R.2    Narla, G.3    Simon, D.I.4    Jain, M.K.5
  • 97
    • 84992389431 scopus 로고    scopus 로고
    • Haplotype synthesis analysis reveals functional variants underlying known genome-wide associated susceptibility loci
    • 27153721
    • Lacour A, Ellinghaus D, Schreiber S, Franke A, Becker T, (2016) Haplotype synthesis analysis reveals functional variants underlying known genome-wide associated susceptibility loci. Bioinformatics32: 2136–2142. doi: 10.1093/bioinformatics/btw125 27153721
    • (2016) Bioinformatics , vol.32 , pp. 2136-2142
    • Lacour, A.1    Ellinghaus, D.2    Schreiber, S.3    Franke, A.4    Becker, T.5
  • 98
    • 84858397791 scopus 로고    scopus 로고
    • LRRK2 as a negative regulator of NFAT: implications for the pathogenesis of inflammatory bowel disease
    • 22390486
    • Vora P, McGovern DP, (2012) LRRK2 as a negative regulator of NFAT: implications for the pathogenesis of inflammatory bowel disease. Expert Rev Clin Immunol8: 227–229. doi: 10.1586/eci.12.11 22390486
    • (2012) Expert Rev Clin Immunol , vol.8 , pp. 227-229
    • Vora, P.1    McGovern, D.P.2
  • 99
    • 42249104404 scopus 로고    scopus 로고
    • SLIC-1/sorting nexin 20: a novel sorting nexin that directs subcellular distribution of PSGL-1
    • 18196517
    • Schaff UY, Shih HH, Lorenz M, Sako D, Kriz R, et al. (2008) SLIC-1/sorting nexin 20: a novel sorting nexin that directs subcellular distribution of PSGL-1. Eur J Immunol38: 550–564. doi: 10.1002/eji.200737777 18196517
    • (2008) Eur J Immunol , vol.38 , pp. 550-564
    • Schaff, U.Y.1    Shih, H.H.2    Lorenz, M.3    Sako, D.4    Kriz, R.5
  • 101
    • 84902077040 scopus 로고    scopus 로고
    • SHIP-1 deficiency in the myeloid compartment is insufficient to induce myeloid expansion or chronic inflammation
    • 24598798
    • Maxwell MJ, Srivastava N, Park MY, Tsantikos E, Engelman RW, et al. (2014) SHIP-1 deficiency in the myeloid compartment is insufficient to induce myeloid expansion or chronic inflammation. Genes Immun15: 233–240. doi: 10.1038/gene.2014.9 24598798
    • (2014) Genes Immun , vol.15 , pp. 233-240
    • Maxwell, M.J.1    Srivastava, N.2    Park, M.Y.3    Tsantikos, E.4    Engelman, R.W.5
  • 102
    • 84872053666 scopus 로고    scopus 로고
    • Hypothesis-free analysis of ATG16L1 demonstrates gene-wide extent of association with Crohn's disease susceptibility
    • 22833393
    • Van Limbergen J, Kabakchiev B, Stempak JM, Schumm P, Xu W, et al. (2013) Hypothesis-free analysis of ATG16L1 demonstrates gene-wide extent of association with Crohn's disease susceptibility. Gut62: 331–333. doi: 10.1136/gutjnl-2012-303165 22833393
    • (2013) Gut , vol.62 , pp. 331-333
    • Van Limbergen, J.1    Kabakchiev, B.2    Stempak, J.M.3    Schumm, P.4    Xu, W.5
  • 103
    • 33748506089 scopus 로고    scopus 로고
    • Human IRGM induces autophagy to eliminate intracellular mycobacteria
    • 16888103
    • Singh SB, Davis AS, Taylor GA, Deretic V, (2006) Human IRGM induces autophagy to eliminate intracellular mycobacteria. Science313: 1438–1441. doi: 10.1126/science.1129577 16888103
    • (2006) Science , vol.313 , pp. 1438-1441
    • Singh, S.B.1    Davis, A.S.2    Taylor, G.A.3    Deretic, V.4
  • 104
    • 33744509713 scopus 로고    scopus 로고
    • The interferon-inducible p47 (IRG) GTPases in vertebrates: loss of the cell autonomous resistance mechanism in the human lineage
    • 16277747
    • Bekpen C, Hunn JP, Rohde C, Parvanova I, Guethlein L, et al. (2005) The interferon-inducible p47 (IRG) GTPases in vertebrates: loss of the cell autonomous resistance mechanism in the human lineage. Genome Biol6: R92. doi: 10.1186/gb-2005-6-11-r92 16277747
    • (2005) Genome Biol , vol.6 , pp. R92
    • Bekpen, C.1    Hunn, J.P.2    Rohde, C.3    Parvanova, I.4    Guethlein, L.5
  • 105
    • 58149464668 scopus 로고    scopus 로고
    • On the level: IRGM gene function is all about expression
    • 19029815
    • Huett A, McCarroll SA, Daly MJ, Xavier RJ, (2009) On the level: IRGM gene function is all about expression. Autophagy5: 96–99. 19029815
    • (2009) Autophagy , vol.5 , pp. 96-99
    • Huett, A.1    McCarroll, S.A.2    Daly, M.J.3    Xavier, R.J.4
  • 106
    • 50449091647 scopus 로고    scopus 로고
    • Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease
    • 19165925
    • McCarroll SA, Huett A, Kuballa P, Chilewski SD, Landry A, et al. (2008) Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease. Nat Genet40: 1107–1112. doi: 10.1038/ng.215 19165925
    • (2008) Nat Genet , vol.40 , pp. 1107-1112
    • McCarroll, S.A.1    Huett, A.2    Kuballa, P.3    Chilewski, S.D.4    Landry, A.5
  • 107
    • 84868097411 scopus 로고    scopus 로고
    • Association of two independent functional risk haplotypes in TNIP1 with systemic lupus erythematosus
    • 22833143
    • Adrianto I, Wang S, Wiley GB, Lessard CJ, Kelly JA, et al. (2012) Association of two independent functional risk haplotypes in TNIP1 with systemic lupus erythematosus. Arthritis Rheum64: 3695–3705. doi: 10.1002/art.34642 22833143
    • (2012) Arthritis Rheum , vol.64 , pp. 3695-3705
    • Adrianto, I.1    Wang, S.2    Wiley, G.B.3    Lessard, C.J.4    Kelly, J.A.5
  • 108
    • 84959883589 scopus 로고    scopus 로고
    • A Locus at 5q33.3 Confers Resistance to Tuberculosis in Highly Susceptible Individuals
    • 26942285
    • Sobota RS, Stein CM, Kodaman N, Scheinfeldt LB, Maro I, et al. (2016) A Locus at 5q33.3 Confers Resistance to Tuberculosis in Highly Susceptible Individuals. Am J Hum Genet98: 514–524. doi: 10.1016/j.ajhg.2016.01.015 26942285
    • (2016) Am J Hum Genet , vol.98 , pp. 514-524
    • Sobota, R.S.1    Stein, C.M.2    Kodaman, N.3    Scheinfeldt, L.B.4    Maro, I.5
  • 109
    • 84957804039 scopus 로고    scopus 로고
    • Retrospective Binary-Trait Association Test Elucidates Genetic Architecture of Crohn Disease
    • 26833331
    • Jiang D, Zhong S, McPeek MS, (2016) Retrospective Binary-Trait Association Test Elucidates Genetic Architecture of Crohn Disease. Am J Hum Genet98: 243–255. doi: 10.1016/j.ajhg.2015.12.012 26833331
    • (2016) Am J Hum Genet , vol.98 , pp. 243-255
    • Jiang, D.1    Zhong, S.2    McPeek, M.S.3
  • 110
    • 2442585704 scopus 로고    scopus 로고
    • Functional variants of OCTN cation transporter genes are associated with Crohn disease
    • 15107849
    • Peltekova VD, Wintle RF, Rubin LA, Amos CI, Huang Q, et al. (2004) Functional variants of OCTN cation transporter genes are associated with Crohn disease. Nat Genet36: 471–475. doi: 10.1038/ng1339 15107849
    • (2004) Nat Genet , vol.36 , pp. 471-475
    • Peltekova, V.D.1    Wintle, R.F.2    Rubin, L.A.3    Amos, C.I.4    Huang, Q.5
  • 111
    • 14944356373 scopus 로고    scopus 로고
    • A risk haplotype in the Solute Carrier Family 22A4/22A5 gene cluster influences phenotypic expression of Crohn's disease
    • 15685536
    • Newman B, Gu X, Wintle R, Cescon D, Yazdanpanah M, et al. (2005) A risk haplotype in the Solute Carrier Family 22A4/22A5 gene cluster influences phenotypic expression of Crohn's disease. Gastroenterology128: 260–269. 15685536
    • (2005) Gastroenterology , vol.128 , pp. 260-269
    • Newman, B.1    Gu, X.2    Wintle, R.3    Cescon, D.4    Yazdanpanah, M.5
  • 112
    • 10744227039 scopus 로고    scopus 로고
    • The IBD6 Crohn's disease locus demonstrates complex interactions with CARD15 and IBD5 disease-associated variants
    • 12928481
    • van Heel DA, Dechairo BM, Dawson G, McGovern DP, Negoro K, et al. (2003) The IBD6 Crohn's disease locus demonstrates complex interactions with CARD15 and IBD5 disease-associated variants. Hum Mol Genet12: 2569–2575. doi: 10.1093/hmg/ddg281 12928481
    • (2003) Hum Mol Genet , vol.12 , pp. 2569-2575
    • van Heel, D.A.1    Dechairo, B.M.2    Dawson, G.3    McGovern, D.P.4    Negoro, K.5
  • 113
    • 35348865583 scopus 로고    scopus 로고
    • EMR1, the human homolog of F4/80, is an eosinophil-specific receptor
    • 17823986
    • Hamann J, Koning N, Pouwels W, Ulfman LH, van Eijk M, et al. (2007) EMR1, the human homolog of F4/80, is an eosinophil-specific receptor. Eur J Immunol37: 2797–2802. doi: 10.1002/eji.200737553 17823986
    • (2007) Eur J Immunol , vol.37 , pp. 2797-2802
    • Hamann, J.1    Koning, N.2    Pouwels, W.3    Ulfman, L.H.4    van Eijk, M.5
  • 114
    • 79960762809 scopus 로고    scopus 로고
    • F4/80: the macrophage-specific adhesion-GPCR and its role in immunoregulation
    • 21618834
    • Lin HH, Stacey M, Stein-Streilein J, Gordon S, (2010) F4/80: the macrophage-specific adhesion-GPCR and its role in immunoregulation. Adv Exp Med Biol706: 149–156. 21618834
    • (2010) Adv Exp Med Biol , vol.706 , pp. 149-156
    • Lin, H.H.1    Stacey, M.2    Stein-Streilein, J.3    Gordon, S.4
  • 115
    • 59649091219 scopus 로고    scopus 로고
    • Colony-stimulating factor-1 (CSF-1) delivers a proatherogenic signal to human macrophages
    • 19004987
    • Irvine KM, Andrews MR, Fernandez-Rojo MA, Schroder K, Burns CJ, et al. (2009) Colony-stimulating factor-1 (CSF-1) delivers a proatherogenic signal to human macrophages. J Leukoc Biol85: 278–288. doi: 10.1189/jlb.0808497 19004987
    • (2009) J Leukoc Biol , vol.85 , pp. 278-288
    • Irvine, K.M.1    Andrews, M.R.2    Fernandez-Rojo, M.A.3    Schroder, K.4    Burns, C.J.5
  • 116
    • 84916888537 scopus 로고    scopus 로고
    • Accounting for eXentricities: analysis of the X chromosome in GWAS reveals X-linked genes implicated in autoimmune diseases
    • 25479423
    • Chang D, Gao F, Slavney A, Ma L, Waldman YY, et al. (2014) Accounting for eXentricities: analysis of the X chromosome in GWAS reveals X-linked genes implicated in autoimmune diseases. PLoS One9: e113684. doi: 10.1371/journal.pone.0113684 25479423
    • (2014) PLoS One , vol.9 , pp. e113684
    • Chang, D.1    Gao, F.2    Slavney, A.3    Ma, L.4    Waldman, Y.Y.5
  • 117
    • 0035127240 scopus 로고    scopus 로고
    • Evidence for inflammatory bowel disease of a susceptibility locus on the X chromosome
    • 11231937
    • Vermeire S, Satsangi J, Peeters M, Parkes M, Jewell DP, et al. (2001) Evidence for inflammatory bowel disease of a susceptibility locus on the X chromosome. Gastroenterology120: 834–840. 11231937
    • (2001) Gastroenterology , vol.120 , pp. 834-840
    • Vermeire, S.1    Satsangi, J.2    Peeters, M.3    Parkes, M.4    Jewell, D.P.5
  • 119
    • 84901921616 scopus 로고    scopus 로고
    • Coregulation of transcription factor binding and nucleosome occupancy through DNA features of mammalian enhancers
    • 24813947
    • Barozzi I, Simonatto M, Bonifacio S, Yang L, Rohs R, et al. (2014) Coregulation of transcription factor binding and nucleosome occupancy through DNA features of mammalian enhancers. Mol Cell54: 844–857. doi: 10.1016/j.molcel.2014.04.006 24813947
    • (2014) Mol Cell , vol.54 , pp. 844-857
    • Barozzi, I.1    Simonatto, M.2    Bonifacio, S.3    Yang, L.4    Rohs, R.5
  • 120
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • 20513432
    • Heinz S, Benner C, Spann N, Bertolino E, Lin YC, et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell38: 576–589. doi: 10.1016/j.molcel.2010.05.004 20513432
    • Mol Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5
  • 121
    • 80054882496 scopus 로고    scopus 로고
    • Mucosal macrophages in intestinal homeostasis and inflammation
    • 22025201
    • Mowat AM, Bain CC, (2011) Mucosal macrophages in intestinal homeostasis and inflammation. J Innate Immun3: 550–564. doi: 10.1159/000329099 22025201
    • (2011) J Innate Immun , vol.3 , pp. 550-564
    • Mowat, A.M.1    Bain, C.C.2
  • 122
    • 84884273778 scopus 로고    scopus 로고
    • Advances in inflammatory bowel disease pathogenesis: linking host genetics and the microbiome
    • 24037875
    • Knights D, Lassen KG, Xavier RJ, (2013) Advances in inflammatory bowel disease pathogenesis: linking host genetics and the microbiome. Gut62: 1505–1510. doi: 10.1136/gutjnl-2012-303954 24037875
    • (2013) Gut , vol.62 , pp. 1505-1510
    • Knights, D.1    Lassen, K.G.2    Xavier, R.J.3
  • 124
    • 84938744950 scopus 로고    scopus 로고
    • A Genome-wide CRISPR Screen in Primary Immune Cells to Dissect Regulatory Networks
    • 26189680
    • Parnas O, Jovanovic M, Eisenhaure TM, Herbst RH, Dixit A, et al. (2015) A Genome-wide CRISPR Screen in Primary Immune Cells to Dissect Regulatory Networks. Cell162: 675–686. doi: 10.1016/j.cell.2015.06.059 26189680
    • (2015) Cell , vol.162 , pp. 675-686
    • Parnas, O.1    Jovanovic, M.2    Eisenhaure, T.M.3    Herbst, R.H.4    Dixit, A.5
  • 125
    • 84911126794 scopus 로고    scopus 로고
    • Transcriptomic analysis of mononuclear phagocyte differentiation and activation
    • 25319328
    • Hume DA, Freeman TC, (2014) Transcriptomic analysis of mononuclear phagocyte differentiation and activation. Immunol Rev262: 74–84. doi: 10.1111/imr.12211 25319328
    • (2014) Immunol Rev , vol.262 , pp. 74-84
    • Hume, D.A.1    Freeman, T.C.2
  • 126
    • 84884297351 scopus 로고    scopus 로고
    • An expression atlas of human primary cells: inference of gene function from coexpression networks
    • 24053356
    • Mabbott NA, Baillie JK, Brown H, Freeman TC, Hume DA, (2013) An expression atlas of human primary cells: inference of gene function from coexpression networks. BMC Genomics14: 632. doi: 10.1186/1471-2164-14-632 24053356
    • (2013) BMC Genomics , vol.14 , pp. 632
    • Mabbott, N.A.1    Baillie, J.K.2    Brown, H.3    Freeman, T.C.4    Hume, D.A.5
  • 127
    • 84918535219 scopus 로고    scopus 로고
    • NOD1 and NOD2: signaling, host defense, and inflammatory disease
    • 25526305
    • Caruso R, Warner N, Inohara N, Nunez G, (2014) NOD1 and NOD2: signaling, host defense, and inflammatory disease. Immunity41: 898–908. doi: 10.1016/j.immuni.2014.12.010 25526305
    • (2014) Immunity , vol.41 , pp. 898-908
    • Caruso, R.1    Warner, N.2    Inohara, N.3    Nunez, G.4
  • 128
    • 83455266438 scopus 로고    scopus 로고
    • Dissecting the genetics of complex inheritance: linkage disequilibrium mapping provides insight into Crohn disease
    • 22152681
    • Elding H, Lau W, Swallow DM, Maniatis N, (2011) Dissecting the genetics of complex inheritance: linkage disequilibrium mapping provides insight into Crohn disease. Am J Hum Genet89: 798–805. doi: 10.1016/j.ajhg.2011.11.006 22152681
    • (2011) Am J Hum Genet , vol.89 , pp. 798-805
    • Elding, H.1    Lau, W.2    Swallow, D.M.3    Maniatis, N.4
  • 129
    • 84953878353 scopus 로고    scopus 로고
    • ATG16L1: A multifunctional susceptibility factor in Crohn disease
    • 25906181
    • Salem M, Ammitzboell M, Nys K, Seidelin JB, Nielsen OH, (2015) ATG16L1: A multifunctional susceptibility factor in Crohn disease. Autophagy11: 585–594. doi: 10.1080/15548627.2015.1017187 25906181
    • (2015) Autophagy , vol.11 , pp. 585-594
    • Salem, M.1    Ammitzboell, M.2    Nys, K.3    Seidelin, J.B.4    Nielsen, O.H.5
  • 131
    • 84937511055 scopus 로고    scopus 로고
    • Interleukin 34: a new modulator of human and experimental inflammatory bowel disease
    • Zwicker S, Martinez GL, Bosma M, Gerling M, Clark R, et al. (2015) Interleukin 34: a new modulator of human and experimental inflammatory bowel disease. Clin Sci (Lond)129: 281–290.
    • (2015) Clin Sci (Lond) , vol.129 , pp. 281-290
    • Zwicker, S.1    Martinez, G.L.2    Bosma, M.3    Gerling, M.4    Clark, R.5
  • 132
    • 84864152036 scopus 로고    scopus 로고
    • IL-34 is a tissue-restricted ligand of CSF1R required for the development of Langerhans cells and microglia
    • 22729249
    • Wang Y, Szretter KJ, Vermi W, Gilfillan S, Rossini C, et al. (2012) IL-34 is a tissue-restricted ligand of CSF1R required for the development of Langerhans cells and microglia. Nat Immunol13: 753–760. doi: 10.1038/ni.2360 22729249
    • (2012) Nat Immunol , vol.13 , pp. 753-760
    • Wang, Y.1    Szretter, K.J.2    Vermi, W.3    Gilfillan, S.4    Rossini, C.5
  • 133
    • 84874304319 scopus 로고    scopus 로고
    • CSF-1 receptor-dependent colon development, homeostasis and inflammatory stress response
    • 23451116
    • Huynh D, Akcora D, Malaterre J, Chan CK, Dai XM, et al. (2013) CSF-1 receptor-dependent colon development, homeostasis and inflammatory stress response. PLoS One8: e56951. doi: 10.1371/journal.pone.0056951 23451116
    • (2013) PLoS One , vol.8 , pp. e56951
    • Huynh, D.1    Akcora, D.2    Malaterre, J.3    Chan, C.K.4    Dai, X.M.5
  • 134
    • 4243108256 scopus 로고    scopus 로고
    • Association of the T allele of an intronic single nucleotide polymorphism in the colony stimulating factor 1 receptor with Crohn's disease: a case-control study
    • 15144560
    • Zapata-Velandia A, Ng SS, Brennan RF, Simonsen NR, Gastanaduy M, et al. (2004) Association of the T allele of an intronic single nucleotide polymorphism in the colony stimulating factor 1 receptor with Crohn's disease: a case-control study. J Immune Based Ther Vaccines2: 6. doi: 10.1186/1476-8518-2-6 15144560
    • (2004) J Immune Based Ther Vaccines , vol.2 , pp. 6
    • Zapata-Velandia, A.1    Ng, S.S.2    Brennan, R.F.3    Simonsen, N.R.4    Gastanaduy, M.5
  • 135
    • 84982253941 scopus 로고    scopus 로고
    • Analysis of protein-coding genetic variation in 60,706 humans
    • 27535533
    • Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, et al. (2016) Analysis of protein-coding genetic variation in 60,706 humans. Nature536: 285–291. doi: 10.1038/nature19057 27535533
    • (2016) Nature , vol.536 , pp. 285-291
    • Lek, M.1    Karczewski, K.J.2    Minikel, E.V.3    Samocha, K.E.4    Banks, E.5
  • 136
    • 77952884683 scopus 로고    scopus 로고
    • Genome-wide association study identifies variants at CSF1, OPTN and TNFRSF11A as genetic risk factors for Paget's disease of bone
    • 20436471
    • Albagha OM, Visconti MR, Alonso N, Langston AL, Cundy T, et al. (2010) Genome-wide association study identifies variants at CSF1, OPTN and TNFRSF11A as genetic risk factors for Paget's disease of bone. Nat Genet42: 520–524. doi: 10.1038/ng.562 20436471
    • (2010) Nat Genet , vol.42 , pp. 520-524
    • Albagha, O.M.1    Visconti, M.R.2    Alonso, N.3    Langston, A.L.4    Cundy, T.5
  • 137
    • 84900448316 scopus 로고    scopus 로고
    • Macrophage-restricted interleukin-10 receptor deficiency, but not IL-10 deficiency, causes severe spontaneous colitis
    • 24792913
    • Zigmond E, Bernshtein B, Friedlander G, Walker CR, Yona S, et al. (2014) Macrophage-restricted interleukin-10 receptor deficiency, but not IL-10 deficiency, causes severe spontaneous colitis. Immunity40: 720–733. doi: 10.1016/j.immuni.2014.03.012 24792913
    • (2014) Immunity , vol.40 , pp. 720-733
    • Zigmond, E.1    Bernshtein, B.2    Friedlander, G.3    Walker, C.R.4    Yona, S.5
  • 138
    • 76149117809 scopus 로고    scopus 로고
    • A novel mouse model of inflammatory bowel disease links mammalian target of rapamycin-dependent hyperproliferation of colonic epithelium to inflammation-associated tumorigenesis
    • 20042677
    • Deng L, Zhou JF, Sellers RS, Li JF, Nguyen AV, et al. A novel mouse model of inflammatory bowel disease links mammalian target of rapamycin-dependent hyperproliferation of colonic epithelium to inflammation-associated tumorigenesis. Am J Pathol176: 952–967. doi: 10.2353/ajpath.2010.090622 20042677
    • Am J Pathol , vol.176 , pp. 952-967
    • Deng, L.1    Zhou, J.F.2    Sellers, R.S.3    Li, J.F.4    Nguyen, A.V.5
  • 139
    • 84971251096 scopus 로고    scopus 로고
    • Genetics and Pathogenesis of Inflammatory Bowel Disease
    • 26907531
    • Liu TC, Stappenbeck TS, (2016) Genetics and Pathogenesis of Inflammatory Bowel Disease. Annu Rev Pathol11: 127–148. doi: 10.1146/annurev-pathol-012615-044152 26907531
    • (2016) Annu Rev Pathol , vol.11 , pp. 127-148
    • Liu, T.C.1    Stappenbeck, T.S.2
  • 140
    • 84908262165 scopus 로고    scopus 로고
    • The diagnostic approach to monogenic very early onset inflammatory bowel disease
    • 25058236 e1003
    • Uhlig HH, Schwerd T, Koletzko S, Shah N, Kammermeier J, et al. (2014) The diagnostic approach to monogenic very early onset inflammatory bowel disease. Gastroenterology147: 990–1007 e1003. doi: 10.1053/j.gastro.2014.07.023 25058236
    • (2014) Gastroenterology , vol.147 , pp. 990-1007
    • Uhlig, H.H.1    Schwerd, T.2    Koletzko, S.3    Shah, N.4    Kammermeier, J.5
  • 141
    • 84899630340 scopus 로고    scopus 로고
    • Gene-gene and gene-environment interactions in ulcerative colitis
    • 24241240
    • Wang MH, Fiocchi C, Zhu X, Ripke S, Kamboh MI, et al. (2014) Gene-gene and gene-environment interactions in ulcerative colitis. Hum Genet133: 547–558. doi: 10.1007/s00439-013-1395-z 24241240
    • (2014) Hum Genet , vol.133 , pp. 547-558
    • Wang, M.H.1    Fiocchi, C.2    Zhu, X.3    Ripke, S.4    Kamboh, M.I.5
  • 142
    • 84989868666 scopus 로고    scopus 로고
    • A Frameshift in CSF2RB Predominant Among Ashkenazi Jews Increases Risk for Crohn's Disease and Reduces Monocyte Signaling via GM-CSF
    • 27377463
    • Chuang LS, Villaverde N, Hui KY, Mortha A, Rahman A, et al. (2016) A Frameshift in CSF2RB Predominant Among Ashkenazi Jews Increases Risk for Crohn's Disease and Reduces Monocyte Signaling via GM-CSF. Gastroenterology. 151:710–723doi: 10.1053/j.gastro.2016.06.045 27377463
    • (2016) Gastroenterology , vol.151 , pp. 710-723
    • Chuang, L.S.1    Villaverde, N.2    Hui, K.Y.3    Mortha, A.4    Rahman, A.5
  • 143
    • 84989953192 scopus 로고    scopus 로고
    • Genetic Complexity of Crohn's Disease in Two Large Ashkenazi Jewish Families
    • 27373512
    • Levine AP, Pontikos N, Schiff ER, Jostins L, Speed D, et al. (2016) Genetic Complexity of Crohn's Disease in Two Large Ashkenazi Jewish Families. Gastroenterology. 151:698–709doi: 10.1053/j.gastro.2016.06.040 27373512
    • (2016) Gastroenterology , vol.151 , pp. 698-709
    • Levine, A.P.1    Pontikos, N.2    Schiff, E.R.3    Jostins, L.4    Speed, D.5
  • 144
    • 84884683078 scopus 로고    scopus 로고
    • Deep resequencing of GWAS loci identifies rare variants in CARD9, IL23R and RNF186 that are associated with ulcerative colitis
    • 24068945
    • Beaudoin M, Goyette P, Boucher G, Lo KS, Rivas MA, et al. (2013) Deep resequencing of GWAS loci identifies rare variants in CARD9, IL23R and RNF186 that are associated with ulcerative colitis. PLoS Genet9: e1003723. doi: 10.1371/journal.pgen.1003723 24068945
    • (2013) PLoS Genet , vol.9 , pp. e1003723
    • Beaudoin, M.1    Goyette, P.2    Boucher, G.3    Lo, K.S.4    Rivas, M.A.5
  • 145
    • 84880617946 scopus 로고    scopus 로고
    • Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies
    • 23624108
    • Ellinghaus D, Zhang H, Zeissig S, Lipinski S, Till A, et al. (2013) Association between variants of PRDM1 and NDP52 and Crohn's disease, based on exome sequencing and functional studies. Gastroenterology145: 339–347. doi: 10.1053/j.gastro.2013.04.040 23624108
    • (2013) Gastroenterology , vol.145 , pp. 339-347
    • Ellinghaus, D.1    Zhang, H.2    Zeissig, S.3    Lipinski, S.4    Till, A.5
  • 146
    • 84924423137 scopus 로고    scopus 로고
    • Pooled sequencing of 531 genes in inflammatory bowel disease identifies an associated rare variant in BTNL2 and implicates other immune related genes
    • 25671699
    • Prescott NJ, Lehne B, Stone K, Lee JC, Taylor K, et al. (2015) Pooled sequencing of 531 genes in inflammatory bowel disease identifies an associated rare variant in BTNL2 and implicates other immune related genes. PLoS Genet11: e1004955. doi: 10.1371/journal.pgen.1004955 25671699
    • (2015) PLoS Genet , vol.11 , pp. e1004955
    • Prescott, N.J.1    Lehne, B.2    Stone, K.3    Lee, J.C.4    Taylor, K.5
  • 147
    • 84894288992 scopus 로고    scopus 로고
    • Genetics of rheumatoid arthritis contributes to biology and drug discovery
    • 24390342
    • Okada Y, Wu D, Trynka G, Raj T, Terao C, et al. (2014) Genetics of rheumatoid arthritis contributes to biology and drug discovery. Nature506: 376–381. doi: 10.1038/nature12873 24390342
    • (2014) Nature , vol.506 , pp. 376-381
    • Okada, Y.1    Wu, D.2    Trynka, G.3    Raj, T.4    Terao, C.5
  • 148
    • 84887099827 scopus 로고    scopus 로고
    • Discovery and refinement of loci associated with lipid levels
    • 24097068
    • Global Lipids Genetics ConsortiumWiller CJ, Schmidt EM, Sengupta S, Peloso GM, et al. (2013) Discovery and refinement of loci associated with lipid levels. Nat Genet45: 1274–1283. doi: 10.1038/ng.2797 24097068
    • (2013) Nat Genet , vol.45 , pp. 1274-1283
    • Willer, C.J.1    Schmidt, E.M.2    Sengupta, S.3    Peloso, G.M.4
  • 149
    • 77957947562 scopus 로고    scopus 로고
    • Hundreds of variants clustered in genomic loci and biological pathways affect human height
    • 20881960
    • Lango Allen H, Estrada K, Lettre G, Berndt SI, Weedon MN, et al. (2010) Hundreds of variants clustered in genomic loci and biological pathways affect human height. Nature467: 832–838. doi: 10.1038/nature09410 20881960
    • (2010) Nature , vol.467 , pp. 832-838
    • Lango Allen, H.1    Estrada, K.2    Lettre, G.3    Berndt, S.I.4    Weedon, M.N.5
  • 151
    • 84956753111 scopus 로고    scopus 로고
    • Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics
    • 26808494
    • Lamparter D, Marbach D, Rueedi R, Kutalik Z, Bergmann S, (2016) Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics. PLoS Comput Biol12: e1004714. doi: 10.1371/journal.pcbi.1004714 26808494
    • (2016) PLoS Comput Biol , vol.12 , pp. e1004714
    • Lamparter, D.1    Marbach, D.2    Rueedi, R.3    Kutalik, Z.4    Bergmann, S.5


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