Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

Science

Volumn 347, Issue 6225, 2015, Pages 1010-1014

  Arner, Erik ^a   Daub, Carsten O ^a   Vitting Seerup, Kristoffer ^a   Andersson, Robin ^a   Lilje, Berit ^b   Drabløs, Finn ^b   Lennartsson, Andreas ^b   Rönnerblad, Michelle ^b   Hrydziuszko, Olga ^b   Vitezic, Morana ^b   Freeman, Tom C ^b   Alhendi, Ahmad M N ^b   Arner, Peter ^b   Axton, Richard ^b   Baillie, J Kenneth ^b   Beckhouse, Anthony ^b   Bodega, Beatrice ^b   Briggs, James ^b   Brombacher, Frank ^b   Davis, Margaret ^b   Detmar, Michael ^b   Ehrlund, Anna ^b   Endoh, Mitsuhiro ^b   Eslami, Afsaneh ^b   Fagiolini, Michela ^b   Fairbairn, Lynsey ^b   Faulkner, Geoffrey J ^b   Ferrai, Carmelo ^b   Fisher, Malcolm E ^b   Forrester, Lesley ^b   Goldowitz, Daniel ^b   Guler, Reto ^b   Ha, Thomas ^b   Hara, Mitsuko ^b   Herlyn, Meenhard ^b   Ikawa, Tomokatsu ^b   Kai, Chieko ^b   Kawamoto, Hiroshi ^b   Khachigian, Levon M ^b   Klinken, S Peter ^b   Kojima, Soichi ^b   Koseki, Haruhiko ^b   Klein, Sarah ^b   Mejhert, Niklas ^b   Miyaguchi, Ken ^b   Mizuno, Yosuke ^b   Morimoto, Mitsuru ^b   Morris, Kelly J ^b   Mummery, Christine ^b   Nakachi, Yutaka ^b   Ogishima, Soichi ^b   Okada Hatakeyama, Mariko ^b   Okazaki, Yasushi ^b   Orlando, Valerio ^b   Ovchinnikov, Dmitry ^b   Passier, Robert ^b   Patrikakis, Margaret ^b   Pombo, Ana ^b   Qin, Xian Yang ^b   Roy, Sugata ^b   Sato, Hiroki ^b   Savvi, Suzana ^b   Saxena, Alka ^b   Schwegmann, Anita ^b   Sugiyama, Daisuke ^b   Swoboda, Rolf ^b   Tanaka, Hiroshi ^b   Tomoiu, Andru ^b   Winteringham, Louise N ^b   Wolvetang, Ernst ^b   Yanagi Mizuochi, Chiyo ^b   Yoneda, Misako ^b   Zabierowski, Susan ^b   Zhang, Peter ^b   Abugessaisa, Imad ^b   Bertin, Nicolas ^b   Diehl, Alexander D ^b   Fukuda, Shiro ^b   Furuno, Masaaki ^b   Harshbarger, Jayson ^b   Hasegawa, Akira ^b   Hori, Fumi ^b   Ishikawa Kato, Sachi ^b   Ishizu, Yuri ^b   Itoh, Masayoshi ^b   Kawashima, Tsugumi ^b   Kojima, Miki ^b   Kondo, Naoto ^b   Lizio, Marina ^b   Meehan, Terrence F ^b   Mungall, Christopher J ^b   Murata, Mitsuyoshi ^b   Nishiyori Sueki, Hiromi ^b   Sahin, Serkan ^b   Nagao Sato, Sayaka ^b   Severin, Jessica ^b   De Hoon, Michiel J L ^b   Kawai, Jun ^b   Kasukawa, Takeya ^b   Lassmann, Timo ^b   Suzuki, Harukazu ^b   Kawaji, Hideya ^a   Summers, Kim M ^a   Wells, Christine ^a   Hume, David A ^a   Forrest, Alistair R R ^a   Sandelin, Albin ^a   Carninci, Piero ^a   Hayashizaki, Yoshihide ^a   more..

^a FANTOM5 Phase 2 Core   (Japan)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; MESSENGER RNA; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR GATA 6;

MAMMAL; SIGNALING;

ANIMAL CELL; ARTICLE; BINDING SITE; CELL ACTIVATION; CELL DIFFERENTIATION; CELL STIMULATION; CELL STRUCTURE; CHROMATIN IMMUNOPRECIPITATION; CHROMATIN STRUCTURE; CONTROLLED STUDY; EMBRYONIC STEM CELL; ENHANCER REGION; GENETIC TRANSCRIPTION; HUMAN; HUMAN CELL; MAMMAL CELL; MESENCHYMAL STEM CELL; NONHUMAN; PLURIPOTENT STEM CELL; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DOMAIN; PROTEIN EXPRESSION; TROPHOBLAST; UPREGULATION; ANIMAL; BOVINAE; CYTOLOGY; DOG; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MOUSE; RAT; STEM CELL;

MAMMALIA;

ANIMALS; BINDING SITES; CATTLE; CELL DIFFERENTIATION; DOGS; ENHANCER ELEMENTS, GENETIC; GENE EXPRESSION REGULATION, DEVELOPMENTAL; MICE; RATS; RNA, MESSENGER; STEM CELLS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 84923796255     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.1259418     Document Type: Article

References (20)

1. M. Levine, C. Cattoglio, R. Tjian, Cell 157, 13-25 (2014).
2. S. Bonn et al., Nat. Genet. 44, 148-156 (2012).
3. A. S. Nord et al., Cell 155, 1521-1531 (2013).
4. A. B. Stergachis et al., Cell 154, 888-903 (2013).
5. T.-K. Kim et al., Nature 465, 182-187 (2010).
6. H. Wu et al., PLOS Genet. 10, e1004610 (2014).
7. M. Rönnerblad et al., Blood 123, e79-e89 (2014).
8. M. U. Kaikkonen et al., Mol. Cell 51, 310-325 (2013).
9. N. Hah, S. Murakami, A. Nagari, C. G. Danko, W. L. Kraus, Genome Res. 23, 1210-1223 (2013).
10. W. Li et al., Nature 498, 516-520 (2013).
11. R. Andersson et al., Nat. Commun. 5, 5336 (2014).
12. R. Andersson et al., Nature 507, 455-461 (2014).
13. ENCODE Project Consortium, Nature 489, 57-74 (2012).
14. FANTOM Consortium and the RIKEN PMI and CLST (DGT), Nature 507, 462-470 (2014).
15. K. Schaukowitch et al., Mol. Cell 56, 29-42 (2014).
16. J. R. Dixon et al., Nature 485, 376-380 (2012).
17. G. Li et al., Cell 148, 84-98 (2012).
18. FANTOM Consortium et al., Nat. Genet. 41, 553-562 (2009).
19. C.-L. Hsieh et al., Proc. Natl. Acad. Sci. U.S.A. 111, 7319-7324 (2014).
20. N. E. IIott et al., Nat. Commun. 5, 3979-3979 (2014).