메뉴 건너뛰기




Volumn 441, Issue 7090, 2006, Pages 173-178

Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; DATABASE SYSTEMS; DISEASES; GENES; IMMUNOLOGY; POLYSACCHARIDES; PRECIPITATION (CHEMICAL); RNA;

EID: 33646547951     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature04768     Document Type: Article
Times cited : (665)

References (27)
  • 1
    • 20544474210 scopus 로고    scopus 로고
    • Pathogen recognition with Toll-like receptors
    • Kawai, T. & Akira, S. Pathogen recognition with Toll-like receptors. Curr. Opin. Immunol. 17, 338-344 (2005).
    • (2005) Curr. Opin. Immunol. , vol.17 , pp. 338-344
    • Kawai, T.1    Akira, S.2
  • 2
    • 19344372271 scopus 로고    scopus 로고
    • Systems biology: Its practice and challenges
    • Aderem, A. Systems biology: its practice and challenges. Cell 121, 511-513 (2005).
    • (2005) Cell , vol.121 , pp. 511-513
    • Aderem, A.1
  • 3
    • 0037079054 scopus 로고    scopus 로고
    • Computational systems biology
    • Kitano, H. Computational systems biology. Nature 420, 206-210 (2002).
    • (2002) Nature , vol.420 , pp. 206-210
    • Kitano, H.1
  • 4
    • 27744568481 scopus 로고    scopus 로고
    • The plasmodium protein network diverges from those of other eukaryotes
    • Suthram, S., Sittler, T. & Ideker, T. The plasmodium protein network diverges from those of other eukaryotes. Nature 438, 108-112 (2005).
    • (2005) Nature , vol.438 , pp. 108-112
    • Suthram, S.1    Sittler, T.2    Ideker, T.3
  • 5
  • 6
    • 0742324860 scopus 로고    scopus 로고
    • TLR signaling pathways
    • Takeda, K. & Akira, S. TLR signaling pathways. Semin. Immunol. 16, 3-9 (2004).
    • (2004) Semin. Immunol. , vol.16 , pp. 3-9
    • Takeda, K.1    Akira, S.2
  • 7
    • 0037022296 scopus 로고    scopus 로고
    • Human macrophage activation programs induced by bacterial pathogens
    • Nau, G. J. et al. Human macrophage activation programs induced by bacterial pathogens. Proc. Natl Acad. Sci. USA 99, 1503-1508 (2002).
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 1503-1508
    • Nau, G.J.1
  • 8
    • 0035130597 scopus 로고    scopus 로고
    • Target gene identification from expression array data by promoter analysis
    • Werner, T. Target gene identification from expression array data by promoter analysis. Biomol. Eng. 17, 87-94 (2001).
    • (2001) Biomol. Eng. , vol.17 , pp. 87-94
    • Werner, T.1
  • 9
    • 0035430282 scopus 로고    scopus 로고
    • Transcriptional regulation by the phosphorylation-dependent factor CREB
    • Mayr, B. & Montminy, M. Transcriptional regulation by the phosphorylation-dependent factor CREB. Nature Rev. Mol. Cell Biol. 2, 599-609 (2001).
    • (2001) Nature Rev. Mol. Cell Biol. , vol.2 , pp. 599-609
    • Mayr, B.1    Montminy, M.2
  • 10
    • 22744442218 scopus 로고    scopus 로고
    • Activating transcription factor 3, a stress sensor, activates p53 by blocking its ubiquitination
    • Yan, C., Lu, D., Hai, T. & Boyd, D. D. Activating transcription factor 3, a stress sensor, activates p53 by blocking its ubiquitination. EMBO J. 24, 2425-2435 (2005).
    • (2005) EMBO J. , vol.24 , pp. 2425-2435
    • Yan, C.1    Lu, D.2    Hai, T.3    Boyd, D.D.4
  • 11
    • 0030020617 scopus 로고    scopus 로고
    • Identification of genes differentially expressed in B16 murine melanoma sublines with different metastatic potentials
    • Ishiguro, T. et al. Identification of genes differentially expressed in B16 murine melanoma sublines with different metastatic potentials. Cancer Res. 56, 875-879 (1996).
    • (1996) Cancer Res. , vol.56 , pp. 875-879
    • Ishiguro, T.1
  • 12
    • 0033855711 scopus 로고    scopus 로고
    • Inhibitory effect of ATF3 antisense oligonucleotide on ectopic growth of HT29 human colon cancer cells
    • Ishiguro, T., Nagawa, H., Naito, M. & Tsuruo, T. Inhibitory effect of ATF3 antisense oligonucleotide on ectopic growth of HT29 human colon cancer cells. Jpn. J. Cancer Res. 91, 833-836 (2000).
    • (2000) Jpn. J. Cancer Res. , vol.91 , pp. 833-836
    • Ishiguro, T.1    Nagawa, H.2    Naito, M.3    Tsuruo, T.4
  • 13
    • 0037064094 scopus 로고    scopus 로고
    • Transcriptional repressor activating transcription factor 3 protects human umbilical vein endothelial cells from tumor necrosis factor-α- induced apoptosis through down-regulation of p53 transcription
    • Kawauchi, J. et al. Transcriptional repressor activating transcription factor 3 protects human umbilical vein endothelial cells from tumor necrosis factor-α-induced apoptosis through down-regulation of p53 transcription. J. Biol. Chem. 277, 39025-39034 (2002).
    • (2002) J. Biol. Chem. , vol.277 , pp. 39025-39034
    • Kawauchi, J.1
  • 14
    • 2942718697 scopus 로고    scopus 로고
    • Role for activating transcription factor 3 in stress-induced beta-cell apoptosis
    • Hartman, M. G. et al. Role for activating transcription factor 3 in stress-induced beta-cell apoptosis. Mol. Cell. Biol. 24, 5721-5732 (2004).
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 5721-5732
    • Hartman, M.G.1
  • 15
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Shannon, P. et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13, 2498-2504 (2003).
    • (2003) Genome Res. , vol.13 , pp. 2498-2504
    • Shannon, P.1
  • 17
    • 33747813561 scopus 로고    scopus 로고
    • The Inferelator: An algorithm for learning parsimonious regulatory networks from systems-biology data-sets de novo
    • Bonneau, R. et al. The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data-sets de novo. Genome Biol. 7, R36-R42 (2006).
    • (2006) Genome Biol. , vol.7
    • Bonneau, R.1
  • 18
    • 33644977499 scopus 로고    scopus 로고
    • A splice variant of stress response gene ATF3 counteracts NF-κB-dependent anti-apoptosis through inhibiting recruitment of CREB-binding protein/p300 coactivator
    • Hua, B. et al. A splice variant of stress response gene ATF3 counteracts NF-κB-dependent anti-apoptosis through inhibiting recruitment of CREB-binding protein/p300 coactivator. J. Biol. Chem. 281, 1620-1629 (2006).
    • (2006) J. Biol. Chem. , vol.281 , pp. 1620-1629
    • Hua, B.1
  • 19
    • 27444436736 scopus 로고    scopus 로고
    • Sox9 and p300 cooperatively regulate chromatin-mediated transcription
    • Furumatsu, T. et al. Sox9 and p300 cooperatively regulate chromatin-mediated transcription. J. Biol. Chem. 280, 35203-35208 (2005).
    • (2005) J. Biol. Chem. , vol.280 , pp. 35203-35208
    • Furumatsu, T.1
  • 20
    • 3142517713 scopus 로고    scopus 로고
    • Expression, localization, and regulation of NOS in human mast cell lines: Effects on leukotriene production
    • Gilchrist, M., McCauley, S. D. & Befus, A. D. Expression, localization, and regulation of NOS in human mast cell lines: effects on leukotriene production. Blood 104, 462-469 (2004).
    • (2004) Blood , vol.104 , pp. 462-469
    • Gilchrist, M.1    McCauley, S.D.2    Befus, A.D.3
  • 21
    • 0036191009 scopus 로고    scopus 로고
    • INCLUSive: INtegrated Clustering, Upstream sequence retrieval and motif Sampling
    • Thijs, G. et al. INCLUSive: INtegrated Clustering, Upstream sequence retrieval and motif Sampling. Bioinformatics 18, 331-332 (2002).
    • (2002) Bioinformatics , vol.18 , pp. 331-332
    • Thijs, G.1
  • 22
    • 2542584654 scopus 로고    scopus 로고
    • Detection of functional DNA motifs via statistical over-representation
    • Frith, M. C. et al. Detection of functional DNA motifs via statistical over-representation. Nucleic Acids Res. 32, 1372-1381 (2004).
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1372-1381
    • Frith, M.C.1
  • 23
    • 0037208166 scopus 로고    scopus 로고
    • TRANSFAC: Transcriptional regulation, from patterns to profiles
    • Matys, V. et al. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res. 31, 374-378 (2003).
    • (2003) Nucleic Acids Res. , vol.31 , pp. 374-378
    • Matys, V.1
  • 24
    • 0012306021 scopus 로고    scopus 로고
    • Apollo: A sequence annotation editor
    • research0082
    • Lewis, S. E. et al. Apollo: a sequence annotation editor. Genome Biol. 3, research0082 (2002).
    • (2002) Genome Biol. , vol.3
    • Lewis, S.E.1
  • 25
    • 0041523923 scopus 로고    scopus 로고
    • Decay rates of human mRNAs: Correlation with functional characteristics and sequence attributes
    • Yang, E. et al. Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes. Genome Res. 13, 1863-1872 (2003).
    • (2003) Genome Res. , vol.13 , pp. 1863-1872
    • Yang, E.1
  • 26
    • 10744226888 scopus 로고    scopus 로고
    • Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
    • Cawley, S. et al. Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs. Cell 116, 499-509 (2004).
    • (2004) Cell , vol.116 , pp. 499-509
    • Cawley, S.1
  • 27
    • 23844519339 scopus 로고    scopus 로고
    • A high-resolution map of active promoters in the human genome
    • Kim, T. H. et al. A high-resolution map of active promoters in the human genome. Nature 436, 876-880 (2005).
    • (2005) Nature , vol.436 , pp. 876-880
    • Kim, T.H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.