메뉴 건너뛰기




Volumn 10, Issue 9, 2015, Pages

High-throughput ligand discovery reveals a sitewise gradient of diversity in broadly evolved hydrophilic fibronectin domains

Author keywords

[No Author keywords available]

Indexed keywords

FIBRONECTIN; PROTEOME; COMPLEMENTARITY DETERMINING REGION; LIGAND; PEPTIDE LIBRARY;

EID: 84946594789     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0138956     Document Type: Article
Times cited : (32)

References (94)
  • 1
    • 70450242805 scopus 로고    scopus 로고
    • Exploring protein fitness landscapes by directed evolution
    • PMID: 19935669
    • Romero PA, Arnold FH. Exploring protein fitness landscapes by directed evolution. Nat Rev Mol Cell Biol 2009; 10:866-76. doi: 10.1038/nrm2805 PMID: 19935669
    • (2009) Nat Rev Mol Cell Biol , vol.10 , pp. 866-876
    • Romero, P.A.1    Arnold, F.H.2
  • 2
    • 33644851164 scopus 로고    scopus 로고
    • Fancy footwork in the sequence space shuffle
    • PMID:16525408
    • Arnold FH. Fancy footwork in the sequence space shuffle. Nat Biotechnol 2006; 24:328-30. doi: 10. 1038/nbt0306-328 PMID: 16525408
    • (2006) Nat Biotechnol , vol.24 , pp. 328-330
    • Arnold, F.H.1
  • 3
    • 79954633234 scopus 로고    scopus 로고
    • A de novo protein binding pair by computational design and directed evolution
    • PMID:21458342
    • Karanicolas J, Corn JE, Chen I, Joachimiak LA, Dym O, Peck SH, et al. A de novo protein binding pair by computational design and directed evolution. Mol Cell 2011; 42:250-60. doi: 10.1016/j.molcel.2011. 03.010 PMID: 21458342
    • (2011) Mol Cell , vol.42 , pp. 250-260
    • Karanicolas, J.1    Corn, J.E.2    Chen, I.3    Joachimiak, L.A.4    Dym, O.5    Peck, S.H.6
  • 4
    • 79956017135 scopus 로고    scopus 로고
    • Computational design of proteins targeting the conserved stem region of influenza hemagglutinin
    • PMID: 21566186
    • Fleishman SJ, Whitehead T a, Ekiert DC, Dreyfus C, Corn JE, Strauch E-M, et al. Computational design of proteins targeting the conserved stem region of influenza hemagglutinin. Science 2011; 332:816-21. doi: 10.1126/science.1202617 PMID: 21566186
    • (2011) Science , vol.332 , pp. 816-821
    • Fleishman, S.J.1    Whitehead, T.A.2    Ekiert, D.C.3    Dreyfus, C.4    Corn, J.E.5    Strauch, E.-M.6
  • 5
    • 84892898809 scopus 로고    scopus 로고
    • Protein folding and de novo protein design for bio-technological applications
    • PMID: 24268901
    • Khoury G a., Smadbeck J, Kieslich Ca., FloudasCa. Protein folding and de novo protein design for bio-technological applications. Trends Biotechnol 2014; 32:99-109. doi: 10.1016/j.tibtech.2013.10.008 PMID: 24268901
    • (2014) Trends Biotechnol , vol.32 , pp. 99-109
    • Khoury, G.A.1    Smadbeck, J.2    Kieslich, C.A.3    Floudas, C.A.4
  • 6
    • 84879549646 scopus 로고    scopus 로고
    • What makes a protein fold amenable to functional innovation? Fold polarity and stability trade-offs
    • PMID:23542341
    • Dellus-Gur E, Toth-Petroczy A, Elias M, Tawfik DS. What makes a protein fold amenable to functional innovation? fold polarity and stability trade-offs. J Mol Biol 2013; 425:2609-21. doi: 10.1016/j.jmb.2013. 03.033 PMID: 23542341
    • (2013) J Mol Biol , vol.425 , pp. 2609-2621
    • Dellus-Gur, E.1    Toth-Petroczy, A.2    Elias, M.3    Tawfik, D.S.4
  • 7
    • 70349901079 scopus 로고    scopus 로고
    • Stability effects of mutations and protein evolvability
    • PMID: 19765975
    • Tokuriki N, Tawfik DS. Stability effects of mutations and protein evolvability. Curr Opin Struct Biol 2009; 19:596-604. doi: 10.1016/j.sbi.2009.08.003 PMID: 19765975
    • (2009) Curr Opin Struct Biol , vol.19 , pp. 596-604
    • Tokuriki, N.1    Tawfik, D.S.2
  • 8
    • 84899980586 scopus 로고    scopus 로고
    • Alternative non-antibody protein scaffolds for molecular imaging of cancer
    • Stern L, Case B, Hackel B. Alternative non-antibody protein scaffolds for molecular imaging of cancer. Curr Opin Chem Eng 2013.
    • (2013) Curr Opin Chem Eng
    • Stern, L.1    Case, B.2    Hackel, B.3
  • 9
    • 84878306995 scopus 로고    scopus 로고
    • Protein-protein interactions: General trends in the relationship between binding affinity and interfacial buried surface area
    • PMID: 23389845
    • Chen J, Sawyer N, Regan L. Protein-protein interactions: General trends in the relationship between binding affinity and interfacial buried surface area. Protein Sci 2013; 22:510-5. doi: 10.1002/pro.2230 PMID: 23389845
    • (2013) Protein Sci , vol.22 , pp. 510-515
    • Chen, J.1    Sawyer, N.2    Regan, L.3
  • 10
    • 84860389926 scopus 로고    scopus 로고
    • Synthetic antibodies designed on natural sequence landscapes
    • PMID: 21787786
    • Zhai W, Glanville J, Fuhrmann M, Mei L, Ni I, Sundar PD, et al. Synthetic antibodies designed on natural sequence landscapes. J Mol Biol 2011; 412:55-71. doi: 10.1016/j.jmb.2011.07.018 PMID: 21787786
    • (2011) J Mol Biol , vol.412 , pp. 55-71
    • Zhai, W.1    Glanville, J.2    Fuhrmann, M.3    Mei, L.4    Ni, I.5    Sundar, P.D.6
  • 11
    • 0034635335 scopus 로고    scopus 로고
    • Fully synthetic human combinatorial antibody libraries (HuCAL) based on modular consensus frameworks and CDRs randomized with trinucleotides
    • PMID: 10656818
    • Knappik A, Ge L, Honegger A, Pack P, Fischer M, Wellnhofer G, et al. Fully synthetic human combinatorial antibody libraries (HuCAL) based on modular consensus frameworks and CDRs randomized with trinucleotides. J Mol Biol 2000; 296:57-86. doi: 10.1006/jmbi.1999.3444 PMID: 10656818
    • (2000) J Mol Biol , vol.296 , pp. 57-86
    • Knappik, A.1    Ge, L.2    Honegger, A.3    Pack, P.4    Fischer, M.5    Wellnhofer, G.6
  • 12
    • 80053303946 scopus 로고    scopus 로고
    • HuCAL PLATINUM, a synthetic fab library optimized for sequence diversity and superior performance in mammalian expression systems
    • PMID: 21856311
    • Prassler J, Thiel S, Pracht C, Polzer A, Peters S, Bauer M, et al. HuCAL PLATINUM, a synthetic fab library optimized for sequence diversity and superior performance in mammalian expression systems. J Mol Biol 2011; 413:261-78. doi: 10.1016/j.jmb.2011.08.012 PMID: 21856311
    • (2011) J Mol Biol , vol.413 , pp. 261-278
    • Prassler, J.1    Thiel, S.2    Pracht, C.3    Polzer, A.4    Peters, S.5    Bauer, M.6
  • 13
    • 1842609526 scopus 로고    scopus 로고
    • Phage-displayed antibody libraries of synthetic heavy chain complementarity determining regions
    • PMID: 15066433
    • Sidhu SS, Li B, Chen Y, Fellouse FA, Eigenbrot C, Fuh G. Phage-displayed antibody libraries of synthetic heavy chain complementarity determining regions. J Mol Biol 2004; 338:299-310. PMID: 15066433
    • (2004) J Mol Biol , vol.338 , pp. 299-310
    • Sidhu, S.S.1    Li, B.2    Chen, Y.3    Fellouse, F.A.4    Eigenbrot, C.5    Fuh, G.6
  • 14
    • 34848848421 scopus 로고    scopus 로고
    • High-throughput generation of synthetic antibodies from highly functional minimalist phage-displayed libraries
    • PMID: 17825836
    • Fellouse FA, Esaki K, Birtalan S, Raptis D, Cancasci VJ, Koide A, et al. High-throughput Generation of Synthetic Antibodies from Highly Functional Minimalist Phage-displayed Libraries. J Mol Biol 2007; 373:924-40. doi: 10.1016/j.jmb.2007.08.005 PMID: 17825836
    • (2007) J Mol Biol , vol.373 , pp. 924-940
    • Fellouse, F.A.1    Esaki, K.2    Birtalan, S.3    Raptis, D.4    Cancasci, V.J.5    Koide, A.6
  • 15
    • 33845665382 scopus 로고    scopus 로고
    • Selection and characterization of Affibody ligands binding to Alzheimer amyloid beta peptides
    • PMID: 17088007
    • Grönwall C, Jonsson A, Lindström S, Gunneriusson E, Stâhl S, Herne N. Selection and characterization of Affibody ligands binding to Alzheimer amyloid beta peptides. J Biotechnol 2007; 128:162-83. PMID: 17088007
    • (2007) J Biotechnol , vol.128 , pp. 162-183
    • Grönwall, C.1    Jonsson, A.2    Lindström, S.3    Gunneriusson, E.4    Stâhl, S.5    Herne, N.6
  • 16
    • 84901281489 scopus 로고    scopus 로고
    • Potent and specific inhibition of glycosidases by small artificial binding proteins (Affitins)
    • Correa A, Pacheco S, Mechaly AE, Obal G, Béhar G, Mouratou B, et al. Potent and specific inhibition of glycosidases by small artificial binding proteins (Affitins). PLoS One 2014; 9. doi: 10.1371/journal.pone. 0097438
    • (2014) PLoS One , vol.9
    • Correa, A.1    Pacheco, S.2    Mechaly, A.E.3    Obal, G.4    Béhar, G.5    Mouratou, B.6
  • 17
    • 84875647768 scopus 로고    scopus 로고
    • Tolerance of the archaeal Sac7d scaffold protein to alternative library designs: Characterization of antiimmunoglobulin G Affitins
    • PMID: 23315487
    • Béhar G, Bellinzoni M, Maillasson M, Paillard-Laurance L, Alzari PM, He X, et al. Tolerance of the archaeal Sac7d scaffold protein to alternative library designs: characterization of antiimmunoglobulin G Affitins. Protein Eng Des Sel 2013; 26:267-75. doi: 10.1093/protein/gzs106 PMID: 23315487
    • (2013) Protein Eng des Sel , vol.26 , pp. 267-275
    • Béhar, G.1    Bellinzoni, M.2    Maillasson, M.3    Paillard-Laurance, L.4    Alzari, P.M.5    He, X.6
  • 18
    • 80052005787 scopus 로고    scopus 로고
    • Protease-resistant peptide ligands from a knottin scaffold library
    • PMID: 21615106
    • Getz J a., Rice JJ, Daugherty PS. Protease-resistant peptide ligands from a knottin scaffold library. ACS Chem Biol 2011; 6:837-44. doi: 10.1021/cb200039s PMID: 21615106
    • (2011) ACS Chem Biol , vol.6 , pp. 837-844
    • Getz, J.A.1    Rice, J.J.2    Daugherty, P.S.3
  • 19
    • 84855593201 scopus 로고    scopus 로고
    • Engineering knottins as novel binding agents
    • PMID: 22230571
    • Moore SJ, Cochran JR. Engineering knottins as novel binding agents. Methods Enzymol2012; 503:223-51. doi: 10.1016/B978-0-12-396962-0.00009-4 PMID: 22230571
    • (2012) Methods Enzymol , vol.503 , pp. 223-251
    • Moore, S.J.1    Cochran, J.R.2
  • 20
    • 84873414124 scopus 로고    scopus 로고
    • Combinatorial design of an anticalin directed against the extra-domain B for the specific targeting of oncofetal fibronectin
    • PMID: 23238252
    • Gebauer M, Schiefner A, Matschiner G, Skerra A. Combinatorial Design of an Anticalin Directed against the Extra-Domain B for the Specific Targeting of Oncofetal Fibronectin. J Mol Biol 2013; 425:780-802. doi: 10.1016/j.jmb.2012.12.004 PMID: 23238252
    • (2013) J Mol Biol , vol.425 , pp. 780-802
    • Gebauer, M.1    Schiefner, A.2    Matschiner, G.3    Skerra, A.4
  • 21
    • 84863448581 scopus 로고    scopus 로고
    • Generation, characterization and structural data of chymase binding proteins based on the human Fyn kinase SH3 domain
    • PMID: 22653218
    • Schlatter D, Brack S, Banner DW, Batey S, Benz J, Bertschinger J, et al. Generation, characterization and structural data of chymase binding proteins based on the human Fyn kinase SH3 domain. MAbs 2012; 4:497-508. doi: 10.4161/mabs.20452 PMID: 22653218
    • (2012) MAbs , vol.4 , pp. 497-508
    • Schlatter, D.1    Brack, S.2    Banner, D.W.3    Batey, S.4    Benz, J.5    Bertschinger, J.6
  • 22
    • 79957773363 scopus 로고    scopus 로고
    • Highly stable binding proteins derived from the hyperthermo-philicSso7d scaffold
    • PMID: 21515282
    • Gera N, Hussain M, Wright RC, Rao BM. Highly stable binding proteins derived from the hyperthermo-philicSso7d scaffold. J Mol Biol 2011;409:601-16. doi: 10.1016/j.jmb.2011.04.020 PMID: 21515282
    • (2011) J Mol Biol , vol.409 , pp. 601-616
    • Gera, N.1    Hussain, M.2    Wright, R.C.3    Rao, B.M.4
  • 23
    • 84901286571 scopus 로고    scopus 로고
    • Tracking Molecular Recognition at the Atomic Level with a New Protein Scaffold Based on the OB-Fold
    • PMID:24465865
    • Steemson JD, Baake M, Rakonjac J, Arcus VL, Liddament MT. Tracking Molecular Recognition at the Atomic Level with a New Protein Scaffold Based on the OB-Fold. PLoS One 2014; 9:e86050. doi: 10. 1371/journal.pone.0086050 PMID: 24465865
    • (2014) PLoS One , vol.9 , pp. e86050
    • Steemson, J.D.1    Baake, M.2    Rakonjac, J.3    Arcus, V.L.4    Liddament, M.T.5
  • 24
    • 0026563253 scopus 로고
    • Semisynthetic combinatorial antibody libraries: A chemical solution to the diversity problem
    • PMID:1584777
    • Barbas CF, Bain JD, Hoekstra DM, Lerner RA. Semisynthetic combinatorial antibody libraries: a chemical solution to the diversity problem. Proc Natl Acad Sci U S A1992; 89:4457-61. doi: 10.1073/pnas. 89.10.4457 PMID: 1584777
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 4457-4461
    • Barbas, C.F.1    Bain, J.D.2    Hoekstra, D.M.3    Lerner, R.A.4
  • 25
    • 77953591801 scopus 로고    scopus 로고
    • The functional capacity of the natural amino acids for molecular recognition
    • PMID: 20383388
    • Birtalan S, Fisher RD, Sidhu SS. The functional capacity of the natural amino acids for molecular recognition. Mol Biosyst2010; 6:1186-94. doi: 10.1039/b927393j PMID: 20383388
    • (2010) Mol Biosyst , vol.6 , pp. 1186-1194
    • Birtalan, S.1    Fisher, R.D.2    Sidhu, S.S.3
  • 26
    • 4344714933 scopus 로고    scopus 로고
    • Synthetic antibodies from a four-amino-acid code: A dominant role for tyrosine in antigen recognition
    • PMID: 15306681
    • Fellouse FA, Wiesmann C, Sidhu SS. Synthetic antibodies from a four-amino-acid code: a dominant role for tyrosine in antigen recognition. Proc Natl Acad Sci U S A 2004; 101:12467-72. doi: 10.1073/pnas.0401786101 PMID: 15306681
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 12467-12472
    • Fellouse, F.A.1    Wiesmann, C.2    Sidhu, S.S.3
  • 27
    • 2342624119 scopus 로고    scopus 로고
    • High-affinity binders selected from designed ankyrin repeat protein libraries
    • PMID: 15097997
    • Binz HK, Amstutz P, Kohl A, Stumpp MT, Briand C, Forrer P, et al. High-affinity binders selected from designed ankyrin repeat protein libraries. Nat Biotechnol 2004; 22:575-82. PMID: 15097997
    • (2004) Nat Biotechnol , vol.22 , pp. 575-582
    • Binz, H.K.1    Amstutz, P.2    Kohl, A.3    Stumpp, M.T.4    Briand, C.5    Forrer, P.6
  • 28
    • 84892930656 scopus 로고    scopus 로고
    • Design, construction, and characterization of a second-generation DARPin library with reduced hydrophobicity
    • PMID: 23868333
    • Seeger MA, Zbinden R, Flütsch A, Gutte PGM, Engeler S, Roschitzki-Voser H, et al. Design, construction, and characterization of a second-generation DARPin library with reduced hydrophobicity. Protein Sci 2013; 22:1239-57. doi: 10.1002/pro.2312 PMID: 23868333
    • (2013) Protein Sci , vol.22 , pp. 1239-1257
    • Seeger, M.A.1    Zbinden, R.2    Flütsch, A.3    Gutte, P.G.M.4    Engeler, S.5    Roschitzki-Voser, H.6
  • 29
    • 0032509129 scopus 로고    scopus 로고
    • The fibronectin type III domain as a scaffold for novel binding proteins
    • PMID: 9837732
    • Koide A, Bailey CW, Huang X, Koide S. The fibronectin type III domain as a scaffold for novel binding proteins. J Mol Biol 1998; 284:1141-51. doi: 10.1006/jmbi.1998.2238 PMID: 9837732
    • (1998) J Mol Biol , vol.284 , pp. 1141-1151
    • Koide, A.1    Bailey, C.W.2    Huang, X.3    Koide, S.4
  • 30
    • 78650468405 scopus 로고    scopus 로고
    • Adnectins: Engineered target-binding protein therapeutics
    • PMID: 21068165
    • Lipovsek D. Adnectins: engineered target-binding protein therapeutics. Protein Eng Des Sel 2011; 24:3-9. doi: 10.1093/protein/gzq097 PMID: 21068165
    • (2011) Protein Eng des Sel , vol.24 , pp. 3-9
    • Lipovsek, D.1
  • 31
    • 84855802142 scopus 로고    scopus 로고
    • Teaching an old scaffold new tricks: Monobodies constructed using alternative surfaces of the FN3 scaffold
    • PMID: 22198408
    • Koide A, Wojcik J, Gilbreth RN, Hoey RJ, Koide S. Teaching an old scaffold new tricks: Monobodies constructed using alternative surfaces of the FN3 scaffold. J Mol Biol 2012; 415:393-405. doi: 10.1016/j.jmb.2011.12.019 PMID: 22198408
    • (2012) J Mol Biol , vol.415 , pp. 393-405
    • Koide, A.1    Wojcik, J.2    Gilbreth, R.N.3    Hoey, R.J.4    Koide, S.5
  • 32
    • 84930811671 scopus 로고    scopus 로고
    • Selection of high-affinity Centyrin FN3 domains from a simple library diversified at a combination of strand and loop positions
    • Diem MD, Hyun L, Yi F, Hippensteel R, Kuhar E, Lowenstein C, et al. Selection of high-affinity Centyrin FN3 domains from a simple library diversified at a combination of strand and loop positions. Protein Eng Des Sel 2014. doi: 10.1093/protein/gzu016
    • (2014) Protein Eng des Sel
    • Diem, M.D.1    Hyun, L.2    Yi, F.3    Hippensteel, R.4    Kuhar, E.5    Lowenstein, C.6
  • 33
    • 77950502609 scopus 로고    scopus 로고
    • A potent and highly specific FN3 monobody inhibitor of the Abl SH2 domain
    • PMID: 20357770
    • Wojcik J, Hantschel O, Grebien F, Kaupe I, Bennett KL, Barkinge J, et al. A potent and highly specific FN3 monobody inhibitor of the Abl SH2 domain. Nat Struct Mol Biol 2010; 17:519-27. doi: 10.1038/nsmb.1793 PMID: 20357770
    • (2010) Nat Struct Mol Biol , vol.17 , pp. 519-527
    • Wojcik, J.1    Hantschel, O.2    Grebien, F.3    Kaupe, I.4    Bennett, K.L.5    Barkinge, J.6
  • 34
    • 70350464362 scopus 로고    scopus 로고
    • Accelerating phage-display library selection by reversible and site-specific biotinylation
    • PMID: 19737805
    • Koide A, Wojcik J, Gilbreth RN, Reichel A, Piehler J, Koide S. Accelerating phage-display library selection by reversible and site-specific biotinylation. Protein Eng Des Sel 2009; 22:685-90. doi: 10.1093/protein/gzp053 PMID: 19737805
    • (2009) Protein Eng des Sel , vol.22 , pp. 685-690
    • Koide, A.1    Wojcik, J.2    Gilbreth, R.N.3    Reichel, A.4    Piehler, J.5    Koide, S.6
  • 35
    • 77954757013 scopus 로고    scopus 로고
    • Stability and CDR composition biases enrich binder functionality landscapes
    • PMID: 20540948
    • Hackel BJ, Ackerman ME, Howland SW, Wittrup KD. Stability and CDR Composition Biases Enrich Binder Functionality Landscapes. J Mol Biol 2010; 401:84-96. doi: 10.1016/j.jmb.2010.06.004 PMID: 20540948
    • (2010) J Mol Biol , vol.401 , pp. 84-96
    • Hackel, B.J.1    Ackerman, M.E.2    Howland, S.W.3    Wittrup, K.D.4
  • 36
    • 34247098240 scopus 로고    scopus 로고
    • Evolution of an interloop disulfide bond in high-affinity antibody mimics based on fibronectin type III domain and selected by yeast surface display: Molecular convergence with single-domain camelid and shark antibodies
    • PMID: 17382960
    • Lipovšek D, Lippow SM, Hackel BJ, Gregson MW, Cheng P, Kapila A, et al. Evolution of an Interloop Disulfide Bond in High-Affinity Antibody Mimics Based on Fibronectin Type III Domain and Selected by Yeast Surface Display: Molecular Convergence with Single-Domain Camelid and Shark Antibodies. J Mol Biol 2007; 368:1024-41. doi: 10.1016/j.jmb.2007.02.029 PMID: 17382960
    • (2007) J Mol Biol , vol.368 , pp. 1024-1041
    • Lipovšek, D.1    Lippow, S.M.2    Hackel, B.J.3    Gregson, M.W.4    Cheng, P.5    Kapila, A.6
  • 37
    • 48749101428 scopus 로고    scopus 로고
    • Picomolar affinity fibronectin domains engineered utilizing loop length diversity, recursive mutagenesis, and loop shuffling
    • PMID:18602401
    • Hackel BJ, Kapila A, Dane Wittrup K. Picomolar Affinity Fibronectin Domains Engineered Utilizing Loop Length Diversity, Recursive Mutagenesis, and Loop Shuffling. J Mol Biol 2008; 381:1238-52. doi: 10. 1016/j.jmb.2008.06.051 PMID: 18602401
    • (2008) J Mol Biol , vol.381 , pp. 1238-1252
    • Hackel, B.J.1    Kapila, A.2    Dane Wittrup, K.3
  • 38
    • 84874998080 scopus 로고    scopus 로고
    • Anti-idiotypic monobodies derived from a fibronectin scaffold
    • PMID: 23394681
    • Sullivan M, Brooks L, Weidenborner P. Anti-Idiotypic Monobodies Derived from a Fibronectin Scaffold. Biochemistry 2013; 52:1802-13. doi: 10.1021/bi3016668 PMID: 23394681
    • (2013) Biochemistry , vol.52 , pp. 1802-1813
    • Sullivan, M.1    Brooks, L.2    Weidenborner, P.3
  • 39
    • 67650555401 scopus 로고    scopus 로고
    • RNA display design of fibronectin-based intrabodies that detect and inhibit sars-cov N protein
    • Liao H-I, Olson CA, Hwang S, Deng H, Wong E, Baric RS, et al. mRNA display design of fibronectin-based intrabodies that detect and inhibit sars-cov N protein. J Biol Chem 2009; 284:M901547200. doi: 10.1074/jbc.M901547200
    • (2009) J Biol Chem , vol.284 , pp. M901547200
    • Liao, H.-I.1    Olson, C.A.2    Hwang, S.3    Deng, H.4    Wong, E.5    Baric, R.S.6
  • 40
    • 79956340760 scopus 로고    scopus 로고
    • Isoform-specific monobody inhibitors of small ubiquitin-related modifiers engineered using structure-guided library design
    • PMID: 21518904
    • Gilbreth RN, Truong K, Madu I, Koide A, Wojcik JB, Li N-S, et al. Isoform-specific monobody inhibitors of small ubiquitin-related modifiers engineered using structure-guided library design. Proc Natl Acad Sci U S A 2011; 108:7751-6. doi: 10.1073/pnas.1102294108 PMID: 21518904
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 7751-7756
    • Gilbreth, R.N.1    Truong, K.2    Madu, I.3    Koide, A.4    Wojcik, J.B.5    Li, N.-S.6
  • 41
    • 84855599223 scopus 로고    scopus 로고
    • Designed ankyrin repeat proteins (DAR-Pins): From research to therapy
    • PMID: 22230567
    • Tamaskovic R, Simon M, Stefan N, Schwill M, Plückthun A. Designed ankyrin repeat proteins (DAR-Pins): From research to therapy. Methods Enzymol 2012; 503:101-34. doi: 10.1016/B978-0-12-396962-0.00005-7 PMID: 22230567
    • (2012) Methods Enzymol , vol.503 , pp. 101-134
    • Tamaskovic, R.1    Simon, M.2    Stefan, N.3    Schwill, M.4    Plückthun, A.5
  • 42
    • 80054079725 scopus 로고    scopus 로고
    • Ribosome display selection of a murine IgG1 fab binding affibody molecule allowing species selective recovery of monoclonal antibodies
    • PMID: 21197589
    • Grimm S, Yu F, Nygren PA. Ribosome display selection of a murine IgG1 fab binding affibody molecule allowing species selective recovery of monoclonal antibodies. Mol Biotechnol 2011; 48:263-76. doi:10.1007/s12033-010-9367-1 PMID: 21197589
    • (2011) Mol Biotechnol , vol.48 , pp. 263-276
    • Grimm, S.1    Yu, F.2    Nygren, P.A.3
  • 43
    • 84855604118 scopus 로고    scopus 로고
    • Anticalins: Small engineered binding proteins based on the lipocalin scaffold
    • PMID: 22230569
    • Gebauer M, Skerra A. Anticalins: Small engineered binding proteins based on the lipocalin scaffold. Methods Enzymol 2012; 503:157-88. doi: 10.1016/B978-0-12-396962-0.00007-0 PMID: 22230569
    • (2012) Methods Enzymol , vol.503 , pp. 157-188
    • Gebauer, M.1    Skerra, A.2
  • 44
    • 33845661569 scopus 로고    scopus 로고
    • Binding hot spots in the TEM1-BLIP interface in light of its modular architecture
    • PMID: 17070843
    • Reichmann D, Cohen M, Abramovich R, Dym O, Lim D, Strynadka NCJ, et al. Binding Hot Spots in the TEM1-BLIP Interface in Light of its Modular Architecture. J Mol Biol 2007; 365:663-79. doi: 10.1016/j. jmb.2006.09.076 PMID: 17070843
    • (2007) J Mol Biol , vol.365 , pp. 663-679
    • Reichmann, D.1    Cohen, M.2    Abramovich, R.3    Dym, O.4    Lim, D.5    Strynadka, N.C.J.6
  • 45
    • 0029056922 scopus 로고
    • Energetics of protein-protein interactions: Analysis ofthe Barnase-Barstar interface by single mutations and double mutant cycles
    • PMID: 7739054
    • Schreiber G, Fersht AR. Energetics of protein-protein interactions: Analysis ofthe Barnase-Barstar interface by single mutations and double mutant cycles. J Mol Biol 1995; 248:478-86. doi: 10.1016/S0022-2836(95)80064-6 PMID: 7739054
    • (1995) J Mol Biol , vol.248 , pp. 478-486
    • Schreiber, G.1    Fersht, A.R.2
  • 46
    • 0029764534 scopus 로고    scopus 로고
    • A mutational analysis ofthe binding of two different proteins to the same antibody
    • PMID: 8703938
    • Dall'Acqua W, Goldman ER, Eisenstein E, Mariuzza RA. A Mutational Analysis ofthe Binding of Two Different Proteins to the Same Antibody. Biochemistry 1996; 35:9667-76. doi: 10.1021/bi960819i PMID: 8703938
    • (1996) Biochemistry , vol.35 , pp. 9667-9676
    • Dall'Acqua, W.1    Goldman, E.R.2    Eisenstein, E.3    Mariuzza, R.A.4
  • 47
    • 0027132013 scopus 로고
    • Comparison of a structural and a functional epitope
    • PMID: 7504735
    • Cunningham BC, Wells JA. Comparison of a structural and a functional epitope. J Mol Biol 1993; 234:554-63. doi: 10.1006/jmbi.1993.1611 PMID: 7504735
    • (1993) J Mol Biol , vol.234 , pp. 554-563
    • Cunningham, B.C.1    Wells, J.A.2
  • 48
    • 0028916599 scopus 로고
    • A hot spot of binding energy in a hormone-receptor interface
    • PMID: 7529940
    • Clackson T, Wells JA. A hot spot of binding energy in a hormone-receptor interface. Science (80-) 1995; 267:383-6. doi: 10.1126/science.7529940 PMID: 7529940
    • (1995) Science (80-) , vol.267 , pp. 383-386
    • Clackson, T.1    Wells, J.A.2
  • 49
    • 0032495872 scopus 로고    scopus 로고
    • Binding interaction of the heregulinbetaegf domain with ErbB3and ErbB4 receptors assessed by alanine scanning mutagenesis
    • PMID:9565587
    • Jones JT. Binding Interaction ofthe Heregulinbetaegf Domain with ErbB3and ErbB4 Receptors Assessed by Alanine Scanning Mutagenesis. J Biol Chem 1998; 273:11667-74. doi: 10.1074/jbc.273. 19.11667 PMID: 9565587
    • (1998) J Biol Chem , vol.273 , pp. 11667-11674
    • Jones, J.T.1
  • 50
    • 84866984245 scopus 로고    scopus 로고
    • Designed hydrophilic and charge mutations of the fibronectin domain: Towards tailored protein biodistribution
    • PMID: 22691700
    • Hackel BJ, Sathirachinda A, Gambhir SS. Designed hydrophilic and charge mutations of the fibronectin domain: Towards tailored protein biodistribution. Protein Eng Des Sel 2012; 25:639-47. doi: 10.1093/protein/gzs036 PMID: 22691700
    • (2012) Protein Eng des Sel , vol.25 , pp. 639-647
    • Hackel, B.J.1    Sathirachinda, A.2    Gambhir, S.S.3
  • 51
    • 0032479179 scopus 로고    scopus 로고
    • Anatomy of hot spots in protein interfaces
    • PMID:9653027
    • Bogan AA, Thorn KS. Anatomy of hot spots in protein interfaces. J Mol Biol 1998; 280:1-9. doi: 10. 1006/jmbi.1998.1843 PMID: 9653027
    • (1998) J Mol Biol , vol.280 , pp. 1-9
    • Bogan, A.A.1    Thorn, K.S.2
  • 52
    • 0036469060 scopus 로고    scopus 로고
    • Unraveling hot spots in binding interfaces: Progress and challenges
    • PMID: 11839484
    • DeLano WL. Unraveling hot spots in binding interfaces: progress and challenges. CurrOpin Struct Biol 2002; 12:14-20. doi: 10.1016/S0959-440X(02)00283-XPMID: 11839484
    • (2002) CurrOpin Struct Biol , vol.12 , pp. 14-20
    • DeLano, W.L.1
  • 53
    • 84862025262 scopus 로고    scopus 로고
    • Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing
    • PMID: 22634563
    • Whitehead TA, Chevalier A, Song Y, Dreyfus C, Fleishman SJ, DeMattos C, et al. Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing. Nat Biotechnol 2012; 30:543-8. doi: 10.1038/nbt.2214 PMID: 22634563
    • (2012) Nat Biotechnol , vol.30 , pp. 543-548
    • Whitehead, T.A.1    Chevalier, A.2    Song, Y.3    Dreyfus, C.4    Fleishman, S.J.5    DeMattos, C.6
  • 54
    • 77956544553 scopus 로고    scopus 로고
    • Coevolution of PDZdomain-ligand interactions analyzed by high-throughput phage display and deep sequencing
    • PMID: 20714644
    • Ernst A, Gfeller D, Kan Z, Seshagiri S, Kim PM, Bader GD, et al. Coevolution of PDZdomain-ligand interactions analyzed by high-throughput phage display and deep sequencing. Mol Biosyst 2010; 6:1782-90. doi: 10.1039/c0mb00061b PMID: 20714644
    • (2010) Mol Biosyst , vol.6 , pp. 1782-1790
    • Ernst, A.1    Gfeller, D.2    Kan, Z.3    Seshagiri, S.4    Kim, P.M.5    Bader, G.D.6
  • 55
    • 84869080668 scopus 로고    scopus 로고
    • Deep sequencing of systematic combinatorial libraries reveals-lactamase sequence constraints at high resolution
    • PMID: 23017428
    • Deng Z, Huang W, Bakkalbasi E, Brown NG, Adamski CJ, Rice K, et al. Deep sequencing of systematic combinatorial libraries reveals-lactamase sequence constraints at high resolution. J Mol Biol 2012; 424:150-67. doi: 10.1016/j.jmb.2012.09.014 PMID: 23017428
    • (2012) J Mol Biol , vol.424 , pp. 150-167
    • Deng, Z.1    Huang, W.2    Bakkalbasi, E.3    Brown, N.G.4    Adamski, C.J.5    Rice, K.6
  • 56
    • 78649893449 scopus 로고    scopus 로고
    • By-passing in vitro screening-Next generation sequencing technologies applied to antibody display and in silico candidate selection
    • Ravn U, Gueneau F, Baerlocher L, Osteras M, Desmurs M, Malinge P, et al. By-passing in vitro screening-Next generation sequencing technologies applied to antibody display and in silico candidate selection. Nucleic Acids Res 2010; 38. doi: 10.1093/nar/gkq789
    • (2010) Nucleic Acids Res , pp. 38
    • Ravn, U.1    Gueneau, F.2    Baerlocher, L.3    Osteras, M.4    Desmurs, M.5    Malinge, P.6
  • 57
    • 0030994634 scopus 로고    scopus 로고
    • Yeast surface display for screening combinatorial polypeptide libraries
    • PMID: 9181578
    • Boder ET, Wittrup KD. Yeast surface display for screening combinatorial polypeptide libraries. Nat Biotechnol 1997; 15:553-7. doi: 10.1038/nbt0697-553 PMID: 9181578
    • (1997) Nat Biotechnol , vol.15 , pp. 553-557
    • Boder, E.T.1    Wittrup, K.D.2
  • 58
    • 77954656041 scopus 로고    scopus 로고
    • An improved yeast transformation method forthe generation of very large human antibody libraries (supplementary info)
    • Benatuil L, Perez JM, Belk J, Hsieh C-M. An improved yeast transformation method forthe generation of very large human antibody libraries (supplementary info). Protein Eng Des Sel 2010; 23:9-10.
    • (2010) Protein Eng des Sel , vol.23 , pp. 9-10
    • Benatuil, L.1    Perez, J.M.2    Belk, J.3    Hsieh, C.-M.4
  • 59
    • 67651098660 scopus 로고    scopus 로고
    • Highly avid magnetic bead capture: An efficient selection method for de novo protein engineering utilizing yeast surface display
    • PMID: 19363813
    • Ackerman M, Levary D, Tobon G, Hackel B, Orcutt KD, Wittrup KD. Highly avid magnetic bead capture: An efficient selection method for de novo protein engineering utilizing yeast surface display. Biotechnol Prog 2009; 25:774-83. doi: 10.1002/btpr.174 PMID: 19363813
    • (2009) Biotechnol Prog , vol.25 , pp. 774-783
    • Ackerman, M.1    Levary, D.2    Tobon, G.3    Hackel, B.4    Orcutt, K.D.5    Wittrup, K.D.6
  • 60
    • 34247176809 scopus 로고    scopus 로고
    • Isolating and engineering human antibodies using yeast surface display
    • PMID: 17406305
    • Chao G, Lau WL, Hackel BJ, Sazinsky SL, Lippow SM, Wittrup KD. Isolating and engineering human antibodies using yeast surface display. Nat Protoc 2006; 1:755-68. doi: 10.1038/nprot.2006.94 PMID: 17406305
    • (2006) Nat Protoc , vol.1 , pp. 755-768
    • Chao, G.1    Lau, W.L.2    Hackel, B.J.3    Sazinsky, S.L.4    Lippow, S.M.5    Wittrup, K.D.6
  • 61
    • 84893723345 scopus 로고    scopus 로고
    • Library preparation methods for next-generation sequencing: Tone down the bias
    • PMID: 24440557
    • Van Dijk EL, Jaszczyszyn Y, Thermes C. Library preparation methods for next-generation sequencing: tone down the bias. Exp Cell Res 2014; 322:12-20. doi: 10.1016/j.yexcr.2014.01.008 PMID: 24440557
    • (2014) Exp Cell Res , vol.322 , pp. 12-20
    • Van Dijk, E.L.1    Jaszczyszyn, Y.2    Thermes, C.3
  • 62
    • 84857271408 scopus 로고    scopus 로고
    • Length and GC-biases during sequencing library amplification: A comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries
    • PMID: 22313406
    • Dabney J, Meyer M. Length and GC-biases during sequencing library amplification: a comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries. Biotechniques 2012; 52:87-94. doi: 10.2144/000113809 PMID: 22313406
    • (2012) Biotechniques , vol.52 , pp. 87-94
    • Dabney, J.1    Meyer, M.2
  • 64
    • 0033397980 scopus 로고    scopus 로고
    • Python: A programming language for software integration and development
    • PMID: 10660911
    • Sanner M. Python: a programming language for software integration and development. J Mol Graph Model 1999; 17:57-61. PMID: 10660911
    • (1999) J Mol Graph Model , vol.17 , pp. 57-61
    • Sanner, M.1
  • 65
    • 34548847733 scopus 로고    scopus 로고
    • Using circular dichroism spectra to estimate protein secondary structure
    • PMID: 17406547
    • Greenfield NJ. Using circular dichroism spectra to estimate protein secondary structure. Nat Protoc 2006; 1:2876-90. doi: 10.1038/nprot.2006.202 PMID: 17406547
    • (2006) Nat Protoc , vol.1 , pp. 2876-2890
    • Greenfield, N.J.1
  • 66
    • 18544397601 scopus 로고    scopus 로고
    • Directed evolution of high-affinity antibody mimics using mRNA display
    • PMID: 12204693
    • Xu L, Aha P, Gu K, Kuimelis RG, Kurz M, Lam T, et al. Directed evolution of high-affinity antibody mimics using mRNA display. Chem Biol 2002; 9:933-42. doi: 10.1016/S1074-5521(02)00187-4 PMID: 12204693
    • (2002) Chem Biol , vol.9 , pp. 933-942
    • Xu, L.1    Aha, P.2    Gu, K.3    Kuimelis, R.G.4    Kurz, M.5    Lam, T.6
  • 67
    • 0030925920 scopus 로고    scopus 로고
    • Pfam: A comprehensive database of protein domain families based on seed alignments
    • PMID: 9223186
    • Sonnhammer ELL, Eddy SR, Durbin R. Pfam: A comprehensive database of protein domain families based on seed alignments. Proteins Struct Funct Genet 1997; 28:405-20. doi: 10.1002/(SICI)1097-0134(199707)28:3〈05::AID-PROT10〉3.0.CO;2-L PMID: 9223186
    • (1997) Proteins Struct Funct Genet , vol.28 , pp. 405-420
    • Sonnhammer, E.L.L.1    Eddy, S.R.2    Durbin, R.3
  • 70
    • 0034703474 scopus 로고    scopus 로고
    • Two proteins with the same structure respond very differently to mutation: The role of plasticity in protein stability
    • PMID:10986129
    • Cota E, Hamill SJ, Fowler SB, Clarke J. Two proteins with the same structure respond very differently to mutation: the role of plasticity in protein stability. J Mol Biol 2000; 302:713-25. doi: 10.1006/jmbi. 2000.4053 PMID: 10986129
    • (2000) J Mol Biol , vol.302 , pp. 713-725
    • Cota, E.1    Hamill, S.J.2    Fowler, S.B.3    Clarke, J.4
  • 71
    • 33644783935 scopus 로고    scopus 로고
    • Tyrosine plays a dominant functional role in the paratope of a synthetic antibody derived from a four amino acid code
    • PMID: 16413576
    • Fellouse FA, Barthelemy PA, Kelley RF, Sidhu SS. Tyrosine Plays a Dominant Functional Role in the Paratope of a Synthetic Antibody Derived from a Four Amino Acid Code. J Mol Biol 2006; 357:100-14. doi: 10.1016/j.jmb.2005.11.092 PMID: 16413576
    • (2006) J Mol Biol , vol.357 , pp. 100-114
    • Fellouse, F.A.1    Barthelemy, P.A.2    Kelley, R.F.3    Sidhu, S.S.4
  • 72
    • 40849097408 scopus 로고    scopus 로고
    • The intrinsic contributions of tyrosine, serine, glycine and arginine to the affinity and specificity of antibodies
    • PMID: 18336836
    • Birtalan S, Zhang Y, Fellouse FA, Shao L, Schaefer G, Sidhu SS. The Intrinsic Contributions of Tyrosine, Serine, Glycine and Arginine to the Affinity and Specificity of Antibodies. J Mol Biol 2008; 377:1518-28. doi: 10.1016/j.jmb.2008.01.093 PMID: 18336836
    • (2008) J Mol Biol , vol.377 , pp. 1518-1528
    • Birtalan, S.1    Zhang, Y.2    Fellouse, F.A.3    Shao, L.4    Schaefer, G.5    Sidhu, S.S.6
  • 73
    • 65749099472 scopus 로고    scopus 로고
    • The importance of being tyrosine: Lessons in molecular recognition from minimalist synthetic binding proteins
    • PMID: 19298050
    • Koide S, Sidhu SS. The importance of being tyrosine: lessons in molecular recognition from minimalist synthetic binding proteins. ACS Chem Biol 2009; 4:325-34. doi: 10.1021/cb800314v PMID: 19298050
    • (2009) ACS Chem Biol , vol.4 , pp. 325-334
    • Koide, S.1    Sidhu, S.S.2
  • 74
    • 0035964254 scopus 로고    scopus 로고
    • Stabilization of a fibronectin type III domain by the removal of unfavorable electrostatic interactions on the protein surface
    • PMID: 11513611
    • Koide A, Jordan MR, Horner SR, Batori V, Koide S. Stabilization of a Fibronectin Type III Domain by the Removal of Unfavorable Electrostatic Interactions on the Protein Surface. Biochemistry 2001; 40:10326-33. doi: 10.1021/bi010916y PMID: 11513611
    • (2001) Biochemistry , vol.40 , pp. 10326-10333
    • Koide, A.1    Jordan, M.R.2    Horner, S.R.3    Batori, V.4    Koide, S.5
  • 75
    • 84940644968 scopus 로고
    • A mathematical theory of communication
    • Shannon CE. A mathematical theory of communication. Bell Syst Tech J 1948; 27:623-56.
    • (1948) Bell Syst Tech J , vol.27 , pp. 623-656
    • Shannon, C.E.1
  • 76
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • PMID: 1438297
    • Henikoff S, Henikoff JG. Amino acid substitution matrices from protein blocks. Proc Natl Acad Sci U S A 1992; 89:10915-9. doi: 10.1073/pnas.89.22.10915 PMID: 1438297
    • (1992) Proc Natl Acad Sci U S A , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 77
    • 0028111743 scopus 로고
    • Sequence statistics reliably predict stabilizing mutations in a protein domain
    • PMID: 8028003
    • Steipe B, Schiller B, Pluckthun A, Steinbacher S. Sequence statistics reliably predict stabilizing mutations in a protein domain. J Mol Biol 1994; 240:188-92. PMID: 8028003
    • (1994) J Mol Biol , vol.240 , pp. 188-192
    • Steipe, B.1    Schiller, B.2    Pluckthun, A.3    Steinbacher, S.4
  • 78
    • 0023734473 scopus 로고
    • Novel non-templated nucleotide addition reactions catalyzed by procaryotic and eucaryotic DNA polymerases
    • PMID: 2460825
    • Clark JM. Novel non-templated nucleotide addition reactions catalyzed by procaryotic and eucaryotic DNA polymerases. Nucleic Acids Res 1988; 16:9677-86. doi: 10.1093/nar/16.20.9677 PMID: 2460825
    • (1988) Nucleic Acids Res , vol.16 , pp. 9677-9686
    • Clark, J.M.1
  • 79
    • 0001514262 scopus 로고
    • Statistics of local complexity in amino acid sequences and sequence databases
    • Wootton JC, Federhen S. Statistics of local complexity in amino acid sequences and sequence databases. ComputChem 1993; 17:149-63. doi: 10.1016/0097-8485(93)85006-X
    • (1993) ComputChem , vol.17 , pp. 149-163
    • Wootton, J.C.1    Federhen, S.2
  • 80
    • 24044445550 scopus 로고    scopus 로고
    • Antibody mimics based on human fibronectin type three domain engineered for thermostability and high-affinity binding to vascular endothelial growth factor receptortwo
    • PMID: 16087651
    • Parker MH, Chen Y, Danehy F, Dufu K, Ekstrom J, Getmanova E, et al. Antibody mimics based on human fibronectin type three domain engineered for thermostability and high-affinity binding to vascular endothelial growth factor receptortwo. Protein Eng Des Sel 2005; 18:435-44. doi: 10.1093/protein/gzi050 PMID: 16087651
    • (2005) Protein Eng des Sel , vol.18 , pp. 435-444
    • Parker, M.H.1    Chen, Y.2    Danehy, F.3    Dufu, K.4    Ekstrom, J.5    Getmanova, E.6
  • 81
    • 84867069553 scopus 로고    scopus 로고
    • Construction of a stability landscape of the CH3 domain of human IgG1 by combining directed evolution with high throughput sequencing
    • PMID: 22846908
    • Traxlmayr MW, Hasenhindl C, Hackl M, Stadlmayr G, Rybka JD, Borth N, et al. Construction of a stability landscape of the CH3 domain of human IgG1 by combining directed evolution with high throughput sequencing. J Mol Biol 2012; 423:397-412. doi: 10.1016/j.jmb.2012.07.017 PMID: 22846908
    • (2012) J Mol Biol , vol.423 , pp. 397-412
    • Traxlmayr, M.W.1    Hasenhindl, C.2    Hackl, M.3    Stadlmayr, G.4    Rybka, J.D.5    Borth, N.6
  • 83
    • 0242551578 scopus 로고    scopus 로고
    • Expressed murine and human CDR-H3 intervals of equal length exhibit distinct repertoires that differ in their amino acid composition and predicted range of structures
    • PMID: 14636599
    • Zemlin M, Klinger M, Link J, Zemlin C, Bauer K, Engler JA, et al. Expressed Murine and Human CDR-H3 Intervals of Equal Length Exhibit Distinct Repertoires that Differ in their Amino Acid Composition and Predicted Range of Structures. J Mol Biol 2003; 334:733-49. doi: 10.1016/j.jmb.2003.10.007 PMID: 14636599
    • (2003) J Mol Biol , vol.334 , pp. 733-749
    • Zemlin, M.1    Klinger, M.2    Link, J.3    Zemlin, C.4    Bauer, K.5    Engler, J.A.6
  • 84
    • 0001528720 scopus 로고    scopus 로고
    • Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules
    • Fraczkiewicz R, Braun W. Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules. J ComputChem 1998; 19:319-33. doi: 10.1002/(SICI)1096-987X (199802)19:3〈319::AID-JCC6〉3.0.CO;2-W
    • (1998) J ComputChem , vol.19 , pp. 319-333
    • Fraczkiewicz, R.1    Braun, W.2
  • 85
    • 0043237620 scopus 로고    scopus 로고
    • The functional binding epitope of a high affinity variant of human growth hormone mapped by shotgun alanine-scanning mutagenesis: Insights into the mechanisms responsible for improved affinity
    • PMID: 12946357
    • Pal G, Kossiakoff AA, Sidhu SS. The functional binding epitope of a high affinity variant of human growth hormone mapped by shotgun alanine-scanning mutagenesis: insights into the mechanisms responsible for improved affinity. J Mol Biol 2003; 332:195-204. PMID: 12946357
    • (2003) J Mol Biol , vol.332 , pp. 195-204
    • Pal, G.1    Kossiakoff, A.A.2    Sidhu, S.S.3
  • 86
    • 0035366379 scopus 로고    scopus 로고
    • Protein functional epitopes: Hot spots, dynamics and combinatorial libraries
    • PMID:11406388
    • Ma B, Wolfson HJ, Nussinov R. Protein functional epitopes: Hot spots, dynamics and combinatorial libraries. CurrOpin Struct Biol 2001; 11:364-9. doi: 10.1016/S0959-440X(00)00216-5 PMID:11406388
    • (2001) CurrOpin Struct Biol , vol.11 , pp. 364-369
    • Ma, B.1    Wolfson, H.J.2    Nussinov, R.3
  • 87
    • 0037195144 scopus 로고    scopus 로고
    • A simple physical model for binding energy hot spots in protein-protein complexes
    • PMID: 12381794
    • Kortemme T, Baker D. A simple physical model for binding energy hot spots in protein-protein complexes. Proc Natl Acad Sci U S A 2002; 99:14116-21. doi: 10.1073/pnas.202485799 PMID: 12381794
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 14116-14121
    • Kortemme, T.1    Baker, D.2
  • 88
    • 0034049316 scopus 로고    scopus 로고
    • Quantitative analysis of the effect of the mutation frequency on the affinity maturation of single chain Fv antibodies
    • PMID: 10688877
    • Daugherty PS, Chen G, Iverson BL, Georgiou G. Quantitative analysis of the effect of the mutation frequency on the affinity maturation of single chain Fv antibodies. Proc Natl Acad Sci U S A 2000; 97:2029-34. doi: 10.1073/pnas.030527597 PMID: 10688877
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 2029-2034
    • Daugherty, P.S.1    Chen, G.2    Iverson, B.L.3    Georgiou, G.4
  • 89
    • 3042681604 scopus 로고    scopus 로고
    • Protein tolerance to random amino acid change
    • PMID: 15197260
    • Guo HH, Choe J, Loeb LA. Protein tolerance to random amino acid change. Proc Natl Acad Sci U S A 2004; 101:9205-10. doi: 10.1073/pnas.0403255101 PMID: 15197260
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 9205-9210
    • Guo, H.H.1    Choe, J.2    Loeb, L.A.3
  • 90
    • 0030737949 scopus 로고    scopus 로고
    • Generation of large libraries of random mutants in Bacillus subtills by PCR-based plasmid multimerization
    • PMID: 9266088
    • Shafikhani S, Siegel RA, Ferrari E, Schellenberger V. Generation of large libraries of random mutants in Bacillus subtills by PCR-based plasmid multimerization. Biotechniques 1997; 23:304-10. PMID: 9266088
    • (1997) Biotechniques , vol.23 , pp. 304-310
    • Shafikhani, S.1    Siegel, R.A.2    Ferrari, E.3    Schellenberger, V.4
  • 92
    • 4444291734 scopus 로고    scopus 로고
    • Activation of apoptosis in vivo by a hydrocarbon-stapled BH3 helix
    • PMID: 15353804
    • Walensky LD, Kung AL, Escher I, Malia TJ, Barbuto S, Wright RD, et al. Activation of apoptosis in vivo by a hydrocarbon-stapled BH3 helix. Science 2004; 305:1466-70. doi: 10.1126/science.1099191 PMID: 15353804
    • (2004) Science , vol.305 , pp. 1466-1470
    • Walensky, L.D.1    Kung, A.L.2    Escher, I.3    Malia, T.J.4    Barbuto, S.5    Wright, R.D.6
  • 93
    • 0032578554 scopus 로고    scopus 로고
    • Structural analysis of the nurse shark (new) antigen receptor (NAR): Molecular convergence of NAR and unusual mammalian immunoglobulins
    • PMID: 9751746
    • Roux KH, Greenberg AS, Greene L, Strelets L, Avila D, McKinney EC, et al. Structural analysis of the nurse shark (new) antigen receptor (NAR): molecular convergence of NAR and unusual mammalian immunoglobulins. Proc Natl Acad Sci U SA 1998; 95:11804-9. doi: 10.1073/pnas.95.20.11804 PMID: 9751746
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 11804-11809
    • Roux, K.H.1    Greenberg, A.S.2    Greene, L.3    Strelets, L.4    Avila, D.5    McKinney, E.C.6
  • 94
    • 0028168145 scopus 로고
    • Sequence and structure of VH domain from naturally occurring camel heavy chain immunoglobulins lacking light chains
    • PMID: 7831284
    • Muyldermans S, Atarhouch T, Saldanha J, Barbosa JA, Hamers R. Sequence and structure of VH domain from naturally occurring camel heavy chain immunoglobulins lacking light chains. Protein Eng 1994; 7:1129-35. doi: 10.1093/protein/7.9.1129 PMID: 7831284
    • (1994) Protein Eng , vol.7 , pp. 1129-1135
    • Muyldermans, S.1    Atarhouch, T.2    Saldanha, J.3    Barbosa, J.A.4    Hamers, R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.