The Protein Data Bank

Nucleic Acids Research

Volumn 28, Issue 1, 2000, Pages 235-242

  Berman, Helen M ^a   Westbrook, John ^a   Feng, Zukang ^a   Gilliland, Gary ^a,b   Bhat, T N ^a,b   Weissig, Helge ^a,c   Shindyalov, Ilya N ^c   Bourne, Philip E ^a,c,d,e  

^a RUTGERS UNIVERSITY   (United States)

^b NATIONAL INSTITUTE OF STANDARDS AND TECHNOLOGY   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d San Diego   (United States)

^e BURNHAM INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

AMINO ACID SEQUENCE; DATA BASE; INFORMATION CENTER; INFORMATION PROCESSING; INTERNET; MACROMOLECULE; PRIORITY JOURNAL; REVIEW; VALIDATION PROCESS;

EID: 0033954256     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/28.1.235     Document Type: Review

References (36)

1. Bernstein, F.C., Koetzle, T.F., Williams, G.J., Meyer, E.E., Brice, M.D., Rodgers, J.R., Kennard, O., Shimanouchi, T. and Tasumi, M. (1977) J. Mol. Biol., 112, 535-542.
2. Bourne, P., Berman, H.M., Watenpaugh, K., Westbrook, J.D. and Fitzgerald, P.M.D. (1997) Methods Enzymol., 277, 571-590.
3. Westbrook, J. and Bourne, P.E. (2000) Bioinformatics, in press.
4. Markley, J.L., Bax, A., Arata, Y., Hilbers, C.W., Kaptein, R., Sykes, B.D., Wright, P.E. and Wüthrich, K. (1998) J. Biomol. NMR, 12, 1-23.
5. Engh, R.A. and Huber, R. (1991) Acta Crystallogr., A47, 392-400.
6. Clowney, L., Jain, S.C., Srinivasan, A.R., Westbrook, J., Olson, W.K. and Berman, H.M. (1996) J. Am. Chem. Soc., 118, 509-518.
7. Gelbin, A., Schneider, B., Clowney, L., Hsieh, S.-H., Olson, W.K. and Berman, H.M. (1996) J. Am. Chem. Soc., 118, 519-528.
8. IUPAC-IUB Joint Commission on Biochemical Nomenclature (1983) Eur. J. Biochem., 131, 9-15.
9. Zhang, J., Cousens, L.S., Barr, P.J. and Sprang, S.R. (1991) Proc. Natl Acad. Sci. USA, 88, 3346-3450.
10. Laskowski, R.A., McArthur, M.W., Moss, D.S. and Thornton, J.M. (1993) J. Appl. Crystallogr., 26, 283-291.
11. Vaguine, A.A., Richelle, J. and Wodak, S.J. (1999) Acta Crystallogr., D55, 191-205.
12. Ulrich, E.L., Markley, J.L and Kyogoku, Y. (1989) Protein Seq. Data Anal., 2, 23-37.
13. Lee, B. and Richards, F.M. (1971) J. Mol. Biol., 55, 379-400.
14. Shindyalov, I.N. and Bourne, P.E. (1998) Protein Eng., 11, 739-747.
15. Gilliland, G.L. (1988) J. Cryst. Growth. 90, 51-59.
16. Pearson, W.R. and Lipman, D.J. (1988) Proc. Natl Acad. Sci. USA, 24, 2444-2448.
17. Bernstein, H.J., Bernstein, F.C. and Bourne, P.E. (1998) J. Appl. Crystallogr., 31, 282-295.
18. Laboratory, B.N. (1998) AutoDep, version 2.1. Upton, NY.
19. Quinn, G., Taylor, A., Wang, H.-P. and Bourne, P.E. (1999) Trends Biochem. Sci., 24, 321-324.
20. Quinn, G., Wang, H.-P., Martinez, D. and Bourne, P.E. (1999) Pacific Symp. Biocomput., 380-391.
21. Siddiqui, A. and Barton, G. (1996) Perspectives on Protein Engineering 1996, 2, (CD-ROM edition; Geisow, M.J. ed.) BIODIGM Ltd (UK). ISBN 0-9529015-0-1.
22. Orengo, C.A., Michie, A.D., Jones, S., Jones, D.T., Swindels, M.B. and Thornton, J.M. (1997) Structure, 5, 1093-1108.
23. Kabsch, W. and Sander, C. (1983) Biopolymers, 22, 2277-2637.
24. Holm, L. and Sander, C. (1998) Nucleic Acids Res., 26, 316-319.
25. Nayal, M., Hitz, B.C. and Honig, B. (1999) Protein Sci., 8, 676-679.
26. Dodge, C., Schneider, R. and Sander, C. (1998) Nucleic Acids Res., 26, 313-315.
27. Suhnel, J. (1996) Comput. Appl. Biosci., 12, 227-229.
28. Hogue, C., Ohkawa, H. and Bryant, S. (1996) Trends Biochem. Sci., 21, 226-229.
29. Berman, H.M., Olson, W.K., Beveridge, D.L., Westbrook, J., Gelbin, A., Demeny, T., Hsieh, S.H., Srinivasan, A.R. and Schneider, B. (1992) Biophys. J., 63, 751-759.
30. Weissig, H., Shindyalov, J.N. and Bourne, P.E. (1998) Acta Crystallogr., D54, 1085-1094.
31. Laskowski, R.A., Hutchinson, E.G., Michie, A.D., Wallace, A.C., Jones, M.L. and Thornton J.M. (1997) Trends Biochem. Sci., 22, 488-490.
32. Murzin, A.G., Brenner, S.E., Hubbard, T. and Chothia, C. (1995) J. Mol. Biol., 247, 536-540.
33. Neshich, G., Togawa, R., Vilella, W. and Honig, B. (1998) Protein Data Bank Quarterly Newsletter, 84.
34. Westhead, D., Slidel, T., Flores, T. and Thornton, J. (1998) Protein Sci., 8, 897-904.
35. Gibrat, J.-F., Madej, T. and Bryant, S.H. (1996) Curr. Opin. Struct. Biol., 6, 377-385.
36. Hooft, R.W.W., Sander, C. and Vriend, G. (1996) J. Appl. Crystallogr., 29, 714-716.