-
1
-
-
0004131381
-
-
Cold Spring Harbor Laboratory Press: New York, NY, USA
-
Coffin, J.M.; Hughes, S.H.; Varmus, H.E. Retroviruses. Cold Spring Harbor Laboratory Press: New York, NY, USA, 1997.
-
(1997)
Retroviruses
-
-
Coffin, J.M.1
Hughes, S.H.2
Varmus, H.E.3
-
2
-
-
0018716671
-
A detailed model of reverse transcription and tests of crucial aspects
-
Gilboa, E.; Mitra, S.W.; Goff, S.; Baltimore, D. A detailed model of reverse transcription and tests of crucial aspects. Cell 1979, 18, 93-100.
-
(1979)
Cell
, vol.18
, pp. 93-100
-
-
Gilboa, E.1
Mitra, S.W.2
Goff, S.3
Baltimore, D.4
-
3
-
-
0003543882
-
-
Cold Spring Harbor Laboratory Press: New York, NY, USA
-
Champoux, J.J. Reverse Transcriptase. Cold Spring Harbor Laboratory Press: New York, NY, USA, 1993.
-
(1993)
Reverse Transcriptase
-
-
Champoux, J.J.1
-
5
-
-
0028924567
-
Mechanism of inhibition of HIV-1 reverse transcriptase by non-nucleoside inhibitors
-
Esnouf, R.; Ren, J.; Ross, C.; Jones, Y.; Stammers, D.; Stuart, D. Mechanism of inhibition of HIV-1 reverse transcriptase by non-nucleoside inhibitors. Nat. Struct. Biol. 1995, 2, 303-308.
-
(1995)
Nat. Struct. Biol
, vol.2
, pp. 303-308
-
-
Esnouf, R.1
Ren, J.2
Ross, C.3
Jones, Y.4
Stammers, D.5
Stuart, D.6
-
6
-
-
0030586090
-
Structure of unliganded HIV-1 reverse transcriptase at 2.7 Å resolution: Implications of conformational changes for polymerization and inhibition mechanisms
-
Hsiou, Y.; Ding, J.; Das, K.; Clark, A. D., Jr.; Hughes, S.H.; Arnold, E. Structure of unliganded HIV-1 reverse transcriptase at 2.7 Å resolution: implications of conformational changes for polymerization and inhibition mechanisms. Structure 1996, 4, 853-860.
-
(1996)
Structure
, vol.4
, pp. 853-860
-
-
Hsiou, Y.1
Ding, J.2
Das, K.3
Clark Jr., A.D.4
Hughes, S.H.5
Arnold, E.6
-
7
-
-
0028842293
-
The structure of unliganded reverse transcriptase from the human immunodeficiency virus type 1
-
Rodgers, D.W.; Gamblin, S.J.; Harris, B.A.; Ray, S.; Culp, J.S.; Hellmig, B.; Woolf, D.J.; Debouck, C.; Harrison, S.C. The structure of unliganded reverse transcriptase from the human immunodeficiency virus type 1. Proc. Natl. Acad. Sci. USA 1995, 92, 1222-1226.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 1222-1226
-
-
Rodgers, D.W.1
Gamblin, S.J.2
Harris, B.A.3
Ray, S.4
Culp, J.S.5
Hellmig, B.6
Woolf, D.J.7
Debouck, C.8
Harrison, S.C.9
-
8
-
-
0035868713
-
Crystal structure of HIV-1 reverse transcriptase in complex with a polypurine tract RNA:DNA
-
Sarafianos, S.G.; Das, K.; Tantillo, C.; Clark, A.D., Jr.; Ding, J.; Whitcomb, J.M.; Boyer, P.L.; Hughes, S.H.; Arnold, E. Crystal structure of HIV-1 reverse transcriptase in complex with a polypurine tract RNA:DNA. EMBO J. 2001, 20, 1449-1461.
-
(2001)
EMBO J
, vol.20
, pp. 1449-1461
-
-
Sarafianos, S.G.1
Das, K.2
Tantillo, C.3
Clark Jr., A.D.4
Ding, J.5
Whitcomb, J.M.6
Boyer, P.L.7
Hughes, S.H.8
Arnold, E.9
-
9
-
-
0032509101
-
Structure and functional implications of the polymerase active site region in a complex of HIV-1 RT with a double-stranded DNA template-primer and an antibody Fab fragment at 2.8 A resolution
-
Ding, J.; Das, K.; Hsiou, Y.; Sarafianos, S.G.; Clark, A.D., Jr.; Jacobo-Molina, A.; Tantillo, C.; Hughes, S.H.; Arnold, E. Structure and functional implications of the polymerase active site region in a complex of HIV-1 RT with a double-stranded DNA template-primer and an antibody Fab fragment at 2.8 A resolution. J. Mol. Biol. 1998, 284, 1095-1111.
-
(1998)
J. Mol. Biol
, vol.284
, pp. 1095-1111
-
-
Ding, J.1
Das, K.2
Hsiou, Y.3
Sarafianos, S.G.4
Clark Jr., A.D.5
Jacobo-Molina, A.6
Tantillo, C.7
Hughes, S.H.8
Arnold, E.9
-
10
-
-
0033621167
-
Lamivudine (3TC) resistance in HIV-1 reverse transcriptase involves steric hindrance with beta-branched amino acids
-
Sarafianos, S.G.; Das, K.; Clark, A.D., Jr.; Ding, J.; Boyer, P.L.; Hughes, S.H.; Arnold, E. Lamivudine (3TC) resistance in HIV-1 reverse transcriptase involves steric hindrance with beta-branched amino acids. Proc. Natl. Acad. Sci. USA 1999, 96, 10027-10032.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 10027-10032
-
-
Sarafianos, S.G.1
Das, K.2
Clark Jr., A.D.3
Ding, J.4
Boyer, P.L.5
Hughes, S.H.6
Arnold, E.7
-
11
-
-
18744365757
-
Structures of HIV-1 reverse transcriptase with pre- and post-translocation AZTMP-terminated DNA
-
Sarafianos, S.G.; Clark, A.D., Jr.; Das, K.; Tuske, S.; Birktoft, J.J.; Ilankumaran, P.; Ramesha, A.R.; Sayer, J.M.; Jerina, D.M.; Boyer, P.L.; Hughes, S.H.; Arnold, E. Structures of HIV-1 reverse transcriptase with pre- and post-translocation AZTMP-terminated DNA. EMBO J. 2002, 21, 6614-6624.
-
(2002)
EMBO J
, vol.21
, pp. 6614-6624
-
-
Sarafianos, S.G.1
Clark Jr., A.D.2
Das, K.3
Tuske, S.4
Birktoft, J.J.5
Ilankumaran, P.6
Ramesha, A.R.7
Sayer, J.M.8
Jerina, D.M.9
Boyer, P.L.10
Hughes, S.H.11
Arnold, E.12
-
12
-
-
0032573488
-
Structure of a covalently trapped catalytic complex of HIV-1 reverse transcriptase: Implications for drug resistance
-
Huang, H.; Chopra, R.; Verdine, G.L.; Harrison, S.C. Structure of a covalently trapped catalytic complex of HIV-1 reverse transcriptase: implications for drug resistance. Science 1998, 282, 1669-1675.
-
(1998)
Science
, vol.282
, pp. 1669-1675
-
-
Huang, H.1
Chopra, R.2
Verdine, G.L.3
Harrison, S.C.4
-
13
-
-
2342453265
-
Structures of HIV-1 RT-DNA complexes before and after incorporation of the anti-AIDS drug tenofovir
-
Tuske, S.; Sarafianos, S.G.; Clark, A.D., Jr.; Ding, J.; Naeger, L.K.; White, K.L.; Miller, M.D.; Gibbs, C.S.; Boyer, P.L.; Clark, P.; Wang, G.; Gaffney, B.L.; Jones, R.A.; Jerina, D.M.; Hughes, S.H.; Arnold, E. Structures of HIV-1 RT-DNA complexes before and after incorporation of the anti-AIDS drug tenofovir. Nat. Struct. Mol. Biol. 2004, 11, 469-474.
-
(2004)
Nat. Struct. Mol. Biol
, vol.11
, pp. 469-474
-
-
Tuske, S.1
Sarafianos, S.G.2
Clark Jr., A.D.3
Ding, J.4
Naeger, L.K.5
White, K.L.6
Miller, M.D.7
Gibbs, C.S.8
Boyer, P.L.9
Clark, P.10
Wang, G.11
Gaffney, B.L.12
Jones, R.A.13
Jerina, D.M.14
Hughes, S.H.15
Arnold, E.16
-
14
-
-
0029075207
-
Structure of HIV-1 RT/TIBO R 86183 complex reveals similarity in the binding of diverse nonnucleoside inhibitors
-
Ding, J.; Das, K.; Moereels, H.; Koymans, L.; Andries, K.; Janssen, P.A.; Hughes, S.H.; Arnold, E. Structure of HIV-1 RT/TIBO R 86183 complex reveals similarity in the binding of diverse nonnucleoside inhibitors. Nat. Struct. Biol. 1995, 2, 407-415.
-
(1995)
Nat. Struct. Biol
, vol.2
, pp. 407-415
-
-
Ding, J.1
Das, K.2
Moereels, H.3
Koymans, L.4
Andries, K.5
Janssen, P.A.6
Hughes, S.H.7
Arnold, E.8
-
15
-
-
0030935265
-
Unique features in the structure of the complex between HIV-1 reverse transcriptase and the bis(heteroaryl)piperazine (BHAP) U-90152 explain resistance mutations for this nonnucleoside inhibitor
-
Esnouf, R.M.; Ren, J.; Hopkins, A.L.; Ross, C.K.; Jones, E.Y.; Stammers, D.K.; Stuart, D.I. Unique features in the structure of the complex between HIV-1 reverse transcriptase and the bis(heteroaryl)piperazine (BHAP) U-90152 explain resistance mutations for this nonnucleoside inhibitor. Proc. Natl. Acad. Sci. USA 1997, 94, 3984-3989.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 3984-3989
-
-
Esnouf, R.M.1
Ren, J.2
Hopkins, A.L.3
Ross, C.K.4
Jones, E.Y.5
Stammers, D.K.6
Stuart, D.I.7
-
16
-
-
0035368238
-
The Lys103Asn mutation of HIV-1 RT: A novel mechanism of drug resistance
-
Hsiou, Y.; Ding, J.; Das, K.; Clark, A.D., Jr.; Boyer, P.L.; Lewi, P.; Janssen, P.A.; Kleim, J.P.; Rosner, M.; Hughes, S.H.; Arnold, E. The Lys103Asn mutation of HIV-1 RT: a novel mechanism of drug resistance. J. Mol. Biol. 2001, 309, 437-445.
-
(2001)
J. Mol. Biol
, vol.309
, pp. 437-445
-
-
Hsiou, Y.1
Ding, J.2
Das, K.3
Clark Jr., A.D.4
Boyer, P.L.5
Lewi, P.6
Janssen, P.A.7
Kleim, J.P.8
Rosner, M.9
Hughes, S.H.10
Arnold, E.11
-
17
-
-
0026693137
-
Crystal structure at 3.5 A resolution of HIV-1 reverse transcriptase complexed with an inhibitor
-
Kohlstaedt, L.A.; Wang, J.; Friedman, J.M.; Rice, P.A.; Steitz, T.A. Crystal structure at 3.5 A resolution of HIV-1 reverse transcriptase complexed with an inhibitor. Science 1992, 256, 1783-1790.
-
(1992)
Science
, vol.256
, pp. 1783-1790
-
-
Kohlstaedt, L.A.1
Wang, J.2
Friedman, J.M.3
Rice, P.A.4
Steitz, T.A.5
-
18
-
-
0026572005
-
Structure of HIV-1 reverse transcriptase/DNA complex at 7 A resolution showing active site locations
-
Arnold, E.; Jacobo-Molina, A.; Nanni, R.G.; Williams, R.L.; Lu, X.; Ding, J.; Clark, A.D., Jr.; Zhang, A.; Ferris, A. L.; Clark, P. Structure of HIV-1 reverse transcriptase/DNA complex at 7 A resolution showing active site locations. Nature 1992, 357, 85-89.
-
(1992)
Nature
, vol.357
, pp. 85-89
-
-
Arnold, E.1
Jacobo-Molina, A.2
Nanni, R.G.3
Williams, R.L.4
Lu, X.5
Ding, J.6
Clark Jr., A.D.7
Zhang, A.8
Ferris, A.L.9
Clark, P.10
-
19
-
-
0021984004
-
Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP
-
Ollis, D.L.; Brick, P.; Hamlin, R.; Xuong, N.G.; Steitz, T.A. Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP. Nature 1985, 313, 762-766.
-
(1985)
Nature
, vol.313
, pp. 762-766
-
-
Ollis, D.L.1
Brick, P.2
Hamlin, R.3
Xuong, N.G.4
Steitz, T.A.5
-
20
-
-
0027318776
-
Crystal structure of human immunodeficiency virus type 1 reverse transcriptase complexed with double-stranded DNA at 3.0 A resolution shows bent DNA
-
Jacobo-Molina, A.; Ding, J.; Nanni, R.G.; Clark, A.D., Jr.; Lu, X.; Tantillo, C.; Williams, R.L.; Kamer, G.; Ferris, A.L.; Clark, P. Crystal structure of human immunodeficiency virus type 1 reverse transcriptase complexed with double-stranded DNA at 3.0 A resolution shows bent DNA. Proc. Natl. Acad. Sci. USA 1993, 90, 6320-6324.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 6320-6324
-
-
Jacobo-Molina, A.1
Ding, J.2
Nanni, R.G.3
Clark Jr., A.D.4
Lu, X.5
Tantillo, C.6
Williams, R.L.7
Kamer, G.8
Ferris, A.L.9
Clark, P.10
-
21
-
-
0028947588
-
High resolution structures of HIV-1 RT from four RT-inhibitor complexes
-
Ren, J.; Esnouf, R.; Garman, E.; Somers, D.; Ross, C.; Kirby, I.; Keeling, J.; Darby, G.; Jones, Y.; Stuart, D. High resolution structures of HIV-1 RT from four RT-inhibitor complexes. Nat. Struct. Biol. 1995, 2, 293-302.
-
(1995)
Nat. Struct. Biol
, vol.2
, pp. 293-302
-
-
Ren, J.1
Esnouf, R.2
Garman, E.3
Somers, D.4
Ross, C.5
Kirby, I.6
Keeling, J.7
Darby, G.8
Jones, Y.9
Stuart, D.10
-
22
-
-
0028079067
-
2.2 A resolution structure of the amino-terminal half of HIV-1 reverse transcriptase (fingers and palm subdomains)
-
Unge, T.; Knight, S.; Bhikhabhai, R.; Lovgren, S.; Dauter, Z.; Wilson, K.; Strandberg, B. 2.2 A resolution structure of the amino-terminal half of HIV-1 reverse transcriptase (fingers and palm subdomains). Structure 1994, 2, 953-961.
-
(1994)
Structure
, vol.2
, pp. 953-961
-
-
Unge, T.1
Knight, S.2
Bhikhabhai, R.3
Lovgren, S.4
Dauter, Z.5
Wilson, K.6
Strandberg, B.7
-
23
-
-
71749100912
-
Structural basis for the role of the K65R mutation in HIV-1 reverse transcriptase polymerization, excision antagonism, and tenofovir resistance
-
Das, K.; Bandwar, R.P.; White, K.L.; Feng, J.Y.; Sarafianos, S.G.; Tuske, S.; Tu, X.; Clark, A. D., Jr.; Boyer, P.L.; Hou, X.; Gaffney, B.L.; Jones, R.A.; Miller, M.D.; Hughes, S.H.; Arnold, E. Structural basis for the role of the K65R mutation in HIV-1 reverse transcriptase polymerization, excision antagonism, and tenofovir resistance. J. Biol. Chem. 2009, 284, 35092-35100.
-
(2009)
J. Biol. Chem
, vol.284
, pp. 35092-35100
-
-
Das, K.1
Bandwar, R.P.2
White, K.L.3
Feng, J.Y.4
Sarafianos, S.G.5
Tuske, S.6
Tu, X.7
Clark Jr., A.D.8
Boyer, P.L.9
Hou, X.10
Gaffney, B.L.11
Jones, R.A.12
Miller, M.D.13
Hughes, S.H.14
Arnold, E.15
-
24
-
-
0034435564
-
Structural basis for the resilience of efavirenz (DMP-266) to drug resistance mutations in HIV-1 reverse transcriptase
-
Ren, J.; Milton, J.; Weaver, K.L.; Short, S.A.; Stuart, D.I.; Stammers, D.K. Structural basis for the resilience of efavirenz (DMP-266) to drug resistance mutations in HIV-1 reverse transcriptase. Structure 2000, 8, 1089-1094.
-
(2000)
Structure
, vol.8
, pp. 1089-1094
-
-
Ren, J.1
Milton, J.2
Weaver, K.L.3
Short, S.A.4
Stuart, D.I.5
Stammers, D.K.6
-
25
-
-
40349091258
-
High-resolution structures of HIV-1 reverse transcriptase/TMC278 complexes: Strategic flexibility explains potency against resistance mutations
-
Das, K.; Bauman, J.D.; Clark, A. D., Jr.; Frenkel, Y.V.; Lewi, P.J.; Shatkin, A.J.; Hughes, S.H.; Arnold, E. High-resolution structures of HIV-1 reverse transcriptase/TMC278 complexes: strategic flexibility explains potency against resistance mutations. Proc. Natl. Acad. Sci. USA 2008, 105, 1466-1471.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 1466-1471
-
-
Das, K.1
Bauman, J.D.2
Clark Jr., A.D.3
Frenkel, Y.V.4
Lewi, P.J.5
Shatkin, A.J.6
Hughes, S.H.7
Arnold, E.8
-
26
-
-
0030596068
-
Crystal structures of 8-Cl and 9-Cl TIBO complexed with wild-type HIV-1 RT and 8-Cl TIBO complexed with the Tyr181Cys HIV-1 RT drug-resistant mutant
-
Das, K.; Ding, J.; Hsiou, Y.; Clark, A.D., Jr.; Moereels, H.; Koymans, L.; Andries, K.; Pauwels, R.; Janssen, P.A.; Boyer, P.L.; Clark, P.; Smith, R.H., Jr.; Kroeger Smith, M.B.; Michejda, C.J.; Hughes, S.H.; Arnold, E. Crystal structures of 8-Cl and 9-Cl TIBO complexed with wild-type HIV-1 RT and 8-Cl TIBO complexed with the Tyr181Cys HIV-1 RT drug-resistant mutant. J. Mol. Biol. 1996, 264, 1085-1100.
-
(1996)
J. Mol. Biol
, vol.264
, pp. 1085-1100
-
-
Das, K.1
Ding, J.2
Hsiou, Y.3
Clark Jr., A.D.4
Moereels, H.5
Koymans, L.6
Andries, K.7
Pauwels, R.8
Janssen, P.A.9
Boyer, P.L.10
Clark, P.11
Smith Jr., R.H.12
Kroeger Smith, M.B.13
Michejda, C.J.14
Hughes, S.H.15
Arnold, E.16
-
27
-
-
33751529192
-
Crystal structures of clinically relevant Lys103Asn/Tyr181Cys double mutant HIV-1 reverse transcriptase in complexes with ATP and non-nucleoside inhibitor HBY 097
-
Das, K.; Sarafianos, S. G.; Clark, A. D., Jr.; Boyer, P. L.; Hughes, S. H.; Arnold, E. Crystal structures of clinically relevant Lys103Asn/Tyr181Cys double mutant HIV-1 reverse transcriptase in complexes with ATP and non-nucleoside inhibitor HBY 097. J. Mol. Biol. 2007, 365, 77-89.
-
(2007)
J. Mol. Biol
, vol.365
, pp. 77-89
-
-
Das, K.1
Sarafianos, S.G.2
Clark Jr., A.D.3
Boyer, P.L.4
Hughes, S.H.5
Arnold, E.6
-
28
-
-
0029644484
-
Structure of HIV-1 reverse transcriptase in a complex with the non-nucleoside inhibitor alpha-APA R 95845 at 2.8 A resolution
-
Ding, J.; Das, K.; Tantillo, C.; Zhang, W.; Clark, A.D., Jr.; Jessen, S.; Lu, X.; Hsiou, Y.; Jacobo-Molina, A.; Andries, K. Structure of HIV-1 reverse transcriptase in a complex with the non-nucleoside inhibitor alpha-APA R 95845 at 2.8 A resolution. Structure 1995, 3, 365-379.
-
(1995)
Structure
, vol.3
, pp. 365-379
-
-
Ding, J.1
Das, K.2
Tantillo, C.3
Zhang, W.4
Clark Jr., A.D.5
Jessen, S.6
Lu, X.7
Hsiou, Y.8
Jacobo-Molina, A.9
Andries, K.10
-
29
-
-
13144282707
-
Structures of Tyr188Leu mutant and wild-type HIV-1 reverse transcriptase complexed with the non-nucleoside inhibitor HBY 097: Inhibitor flexibility is a useful design feature for reducing drug resistance
-
Hsiou, Y.; Das, K.; Ding, J.; Clark, A.D., Jr.; Kleim, J.P.; Rosner, M.; Winkler, I.; Riess, G.; Hughes, S.H.; Arnold, E. Structures of Tyr188Leu mutant and wild-type HIV-1 reverse transcriptase complexed with the non-nucleoside inhibitor HBY 097: inhibitor flexibility is a useful design feature for reducing drug resistance. J. Mol. Biol. 1998, 284, 313-323.
-
(1998)
J. Mol. Biol
, vol.284
, pp. 313-323
-
-
Hsiou, Y.1
Das, K.2
Ding, J.3
Clark Jr., A.D.4
Kleim, J.P.5
Rosner, M.6
Winkler, I.7
Riess, G.8
Hughes, S.H.9
Arnold, E.10
-
30
-
-
0036229823
-
Structural basis for the inhibitory efficacy of efavirenz (DMP-266), MSC194 and PNU142721 towards the HIV-1 RT K103N mutant
-
Lindberg, J.; Sigurdsson, S.; Lowgren, S.; Andersson, H.O.; Sahlberg, C.; Noreen, R.; Fridborg, K.; Zhang, H.; Unge, T. Structural basis for the inhibitory efficacy of efavirenz (DMP-266), MSC194 and PNU142721 towards the HIV-1 RT K103N mutant. Eur. J. Biochem. 2002, 269, 1670-1677.
-
(2002)
Eur. J. Biochem
, vol.269
, pp. 1670-1677
-
-
Lindberg, J.1
Sigurdsson, S.2
Lowgren, S.3
Andersson, H.O.4
Sahlberg, C.5
Noreen, R.6
Fridborg, K.7
Zhang, H.8
Unge, T.9
-
31
-
-
3242657912
-
Structure of HIV-1 reverse transcriptase bound to an inhibitor active against mutant reverse transcriptases resistant to other nonnucleoside inhibitors
-
Pata, J. D.; Stirtan, W. G.; Goldstein, S. W.; Steitz, T. A. Structure of HIV-1 reverse transcriptase bound to an inhibitor active against mutant reverse transcriptases resistant to other nonnucleoside inhibitors. Proc. Natl. Acad. Sci. USA 2004, 101, 10548-10553.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 10548-10553
-
-
Pata, J.D.1
Stirtan, W.G.2
Goldstein, S.W.3
Steitz, T.A.4
-
32
-
-
0034640387
-
Binding of the second generation non-nucleoside inhibitor S-1153 to HIV-1 reverse transcriptase involves extensive main chain hydrogen bonding
-
Ren, J.; Nichols, C.; Bird, L.E.; Fujiwara, T.; Sugimoto, H.; Stuart, D.I.; Stammers, D.K. Binding of the second generation non-nucleoside inhibitor S-1153 to HIV-1 reverse transcriptase involves extensive main chain hydrogen bonding. J. Biol. Chem. 2000, 275, 14316-14320.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 14316-14320
-
-
Ren, J.1
Nichols, C.2
Bird, L.E.3
Fujiwara, T.4
Sugimoto, H.5
Stuart, D.I.6
Stammers, D.K.7
-
33
-
-
0842289678
-
Crystal structures of HIV-1 reverse transcriptases mutated at codons 100, 106 and 108 and mechanisms of resistance to non-nucleoside inhibitors
-
Ren, J.; Nichols, C.E.; Chamberlain, P.P.; Weaver, K.L.; Short, S.A.; Stammers, D.K. Crystal structures of HIV-1 reverse transcriptases mutated at codons 100, 106 and 108 and mechanisms of resistance to non-nucleoside inhibitors. J. Mol. Biol. 2004, 336, 569-578.
-
(2004)
J. Mol. Biol
, vol.336
, pp. 569-578
-
-
Ren, J.1
Nichols, C.E.2
Chamberlain, P.P.3
Weaver, K.L.4
Short, S.A.5
Stammers, D.K.6
-
34
-
-
33746838109
-
Structural insights into mechanisms of non-nucleoside drug resistance for HIV-1 reverse transcriptases mutated at codons 101 or 138
-
Ren, J.; Nichols, C.E.; Stamp, A.; Chamberlain, P.P.; Ferris, R.; Weaver, K.L.; Short, S.A.; Stammers, D. K. Structural insights into mechanisms of non-nucleoside drug resistance for HIV-1 reverse transcriptases mutated at codons 101 or 138. FEBS J. 2006, 273, 3850-3860.
-
(2006)
FEBS J
, vol.273
, pp. 3850-3860
-
-
Ren, J.1
Nichols, C.E.2
Stamp, A.3
Chamberlain, P.P.4
Ferris, R.5
Weaver, K.L.6
Short, S.A.7
Stammers, D.K.8
-
35
-
-
64649098298
-
HIV-1 reverse transcriptase can simultaneously engage its DNA/RNA substrate at both DNA polymerase and RNase H active sites: Implications for RNase H inhibition
-
Beilhartz, G.L.; Wendeler, M.; Baichoo, N.; Rausch, J.; Le Grice, S.; Gotte, M. HIV-1 reverse transcriptase can simultaneously engage its DNA/RNA substrate at both DNA polymerase and RNase H active sites: implications for RNase H inhibition. J. Mol. Biol. 2009, 388, 462-474.
-
(2009)
J. Mol. Biol
, vol.388
, pp. 462-474
-
-
Beilhartz, G.L.1
Wendeler, M.2
Baichoo, N.3
Rausch, J.4
le Grice, S.5
Gotte, M.6
-
36
-
-
0025040632
-
An attempt to unify the structure of polymerases
-
Delarue, M.; Poch, O.; Tordo, N.; Moras, D.; Argos, P. An attempt to unify the structure of polymerases. Protein Eng. 1990, 3, 461-467.
-
(1990)
Protein Eng
, vol.3
, pp. 461-467
-
-
Delarue, M.1
Poch, O.2
Tordo, N.3
Moras, D.4
Argos, P.5
-
37
-
-
0024784519
-
Identification of four conserved motifs among the RNA-dependent polymerase encoding elements
-
Poch, O.; Sauvaget, I.; Delarue, M.; Tordo, N. Identification of four conserved motifs among the RNA-dependent polymerase encoding elements. EMBO J. 1989, 8, 3867-3874.
-
(1989)
EMBO J
, vol.8
, pp. 3867-3874
-
-
Poch, O.1
Sauvaget, I.2
Delarue, M.3
Tordo, N.4
-
38
-
-
2642604727
-
Computer analysis of retroviral pol genes: Assignment of enzymatic functions to specific sequences and homologies with nonviral enzymes
-
Johnson, M.S.; McClure, M.A.; Feng, D.F.; Gray, J.; Doolittle, R.F. Computer analysis of retroviral pol genes: assignment of enzymatic functions to specific sequences and homologies with nonviral enzymes. Proc. Natl. Acad. Sci. USA 1986, 83, 7648-7652.
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 7648-7652
-
-
Johnson, M.S.1
McClure, M.A.2
Feng, D.F.3
Gray, J.4
Doolittle, R.F.5
-
39
-
-
0025006614
-
Origin and evolution of retroelements based upon their reverse transcriptase sequences
-
Xiong, Y.; Eickbush, T.H. Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J. 1990, 9, 3353-3362.
-
(1990)
EMBO J
, vol.9
, pp. 3353-3362
-
-
Xiong, Y.1
Eickbush, T.H.2
-
40
-
-
0031039885
-
A minor groove binding track in reverse transcriptase
-
Bebenek, K.; Beard, W.A.; Darden, T.A.; Li, L.; Prasad, R.; Luton, B.A.; Gorenstein, D.G.; Wilson, S.H.; Kunkel, T.A. A minor groove binding track in reverse transcriptase. Nat. Struct. Biol. 1997, 4, 194-197.
-
(1997)
Nat. Struct. Biol
, vol.4
, pp. 194-197
-
-
Bebenek, K.1
Beard, W.A.2
Darden, T.A.3
Li, L.4
Prasad, R.5
Luton, B.A.6
Gorenstein, D.G.7
Wilson, S.H.8
Kunkel, T.A.9
-
41
-
-
33646379868
-
Structural determinants of slippage-mediated mutations by human immunodeficiency virus type 1 reverse transcriptase
-
Hamburgh, M.E.; Curr, K.A.; Monaghan, M.; Rao, V.R.; Tripathi, S.; Preston, B.D.; Sarafianos, S.; Arnold, E.; Darden, T.; Prasad, V.R. Structural determinants of slippage-mediated mutations by human immunodeficiency virus type 1 reverse transcriptase. J. Biol. Chem. 2006, 281, 7421-7428.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 7421-7428
-
-
Hamburgh, M.E.1
Curr, K.A.2
Monaghan, M.3
Rao, V.R.4
Tripathi, S.5
Preston, B.D.6
Sarafianos, S.7
Arnold, E.8
Darden, T.9
Prasad, V.R.10
-
42
-
-
0030977397
-
Alanine-scanning mutations in the primer grip of p66 HIV-1 reverse transcriptase result in selective loss of RNA priming activity
-
Powell, M.D.; Ghosh, M.; Jacques, P.S.; Howard, K.J.; Le Grice, S.F.; Levin, J.G. Alanine-scanning mutations in the primer grip of p66 HIV-1 reverse transcriptase result in selective loss of RNA priming activity. J. Biol. Chem. 1997, 272, 13262-13269.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 13262-13269
-
-
Powell, M.D.1
Ghosh, M.2
Jacques, P.S.3
Howard, K.J.4
le Grice, S.F.5
Levin, J.G.6
-
43
-
-
0030008999
-
Alterations to the primer grip of p66 HIV-1 reverse transcriptase and their consequences for template-primer utilization
-
Ghosh, M.; Jacques, P.S.; Rodgers, D.W.; Ottman, M.; Darlix, J.L.; Le Grice, S.F. Alterations to the primer grip of p66 HIV-1 reverse transcriptase and their consequences for template-primer utilization. Biochemistry 1996, 35, 8553-8562.
-
(1996)
Biochemistry
, vol.35
, pp. 8553-8562
-
-
Ghosh, M.1
Jacques, P.S.2
Rodgers, D.W.3
Ottman, M.4
Darlix, J.L.5
le Grice, S.F.6
-
44
-
-
0037047073
-
Mutations in the RNase H domain of HIV-1 reverse transcriptase affect the initiation of DNA synthesis and the specificity of RNase H cleavage in vivo
-
Julias, J.G.; McWilliams, M.J.; Sarafianos, S.G.; Arnold, E.; Hughes, S.H. Mutations in the RNase H domain of HIV-1 reverse transcriptase affect the initiation of DNA synthesis and the specificity of RNase H cleavage in vivo. Proc. Natl. Acad. Sci. USA 2002, 99, 9515-9520.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 9515-9520
-
-
Julias, J.G.1
McWilliams, M.J.2
Sarafianos, S.G.3
Arnold, E.4
Hughes, S.H.5
-
45
-
-
0033214560
-
Mutations in the primer grip region of HIV reverse transcriptase can increase replication fidelity
-
Wisniewski, M.; Palaniappan, C.; Fu, Z.; Le Grice, S.F.; Fay, P.; Bambara, R.A. Mutations in the primer grip region of HIV reverse transcriptase can increase replication fidelity. J. Biol. Chem. 1999, 274, 28175-28184.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 28175-28184
-
-
Wisniewski, M.1
Palaniappan, C.2
Fu, Z.3
le Grice, S.F.4
Fay, P.5
Bambara, R.A.6
-
46
-
-
0030924328
-
Mutating a conserved motif of the HIV-1 reverse transcriptase palm subdomain alters primer utilization
-
Ghosh, M.; Williams, J.; Powell, M.D.; Levin, J.G.; Le Grice, S.F. Mutating a conserved motif of the HIV-1 reverse transcriptase palm subdomain alters primer utilization. Biochemistry 1997, 36, 5758-5768.
-
(1997)
Biochemistry
, vol.36
, pp. 5758-5768
-
-
Ghosh, M.1
Williams, J.2
Powell, M.D.3
Levin, J.G.4
le Grice, S.F.5
-
47
-
-
0028172953
-
Mutating the primer grip of p66 HIV-1 reverse transcriptase implicates tryptophan-229 in template-primer utilization
-
Jacques, P.S.; Wohrl, B.M.; Ottmann, M.; Darlix, J.L.; Le Grice, S.F. Mutating the primer grip of p66 HIV-1 reverse transcriptase implicates tryptophan-229 in template-primer utilization. J. Biol. Chem. 1994, 269, 26472-26478.
-
(1994)
J. Biol. Chem
, vol.269
, pp. 26472-26478
-
-
Jacques, P.S.1
Wohrl, B.M.2
Ottmann, M.3
Darlix, J.L.4
le Grice, S.F.5
-
48
-
-
0032518398
-
Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution
-
Doublie, S.; Tabor, S.; Long, A.M.; Richardson, C.C.; Ellenberger, T. Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution. Nature 1998, 391, 251-258.
-
(1998)
Nature
, vol.391
, pp. 251-258
-
-
Doublie, S.1
Tabor, S.2
Long, A.M.3
Richardson, C.C.4
Ellenberger, T.5
-
49
-
-
0032535528
-
Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: Structural basis for nucleotide incorporation
-
Li, Y.; Korolev, S.; Waksman, G. Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation. EMBO J. 1998, 17, 7514-7525.
-
(1998)
EMBO J
, vol.17
, pp. 7514-7525
-
-
Li, Y.1
Korolev, S.2
Waksman, G.3
-
50
-
-
0030592095
-
Structure of Taq polymerase with DNA at the polymerase active site
-
Eom, S.H.; Wang, J.; Steitz, T.A. Structure of Taq polymerase with DNA at the polymerase active site. Nature 1996, 382, 278-281.
-
(1996)
Nature
, vol.382
, pp. 278-281
-
-
Eom, S.H.1
Wang, J.2
Steitz, T.A.3
-
51
-
-
0034687083
-
Interactions of conformationally biased north and south 2'-fluoro-2', 3'-dideoxynucleoside 5'-triphosphates with the active site of HIV-1 reverse transcriptase
-
Mu, L.; Sarafianos, S.G.; Nicklaus, M.C.; Russ, P.; Siddiqui, M.A.; Ford, H., Jr.; Mitsuya, H.; Le, R.; Kodama, E.; Meier, C.; Knispel, T.; Anderson, L.; Barchi, J.J., Jr.; Marquez, V.E. Interactions of conformationally biased north and south 2'-fluoro-2', 3'-dideoxynucleoside 5'-triphosphates with the active site of HIV-1 reverse transcriptase. Biochemistry 2000, 39, 11205-11215.
-
(2000)
Biochemistry
, vol.39
, pp. 11205-11215
-
-
Mu, L.1
Sarafianos, S.G.2
Nicklaus, M.C.3
Russ, P.4
Siddiqui, M.A.5
Ford Jr., H.6
Mitsuya, H.7
le, R.8
Kodama, E.9
Meier, C.10
Knispel, T.11
Anderson, L.12
Barchi Jr., J.J.13
Marquez, V.E.14
-
52
-
-
0031028380
-
Conferring RNA polymerase activity to a DNA polymerase: A single residue in reverse transcriptase controls substrate selection
-
Gao, G.; Orlova, M.; Georgiadis, M.M.; Hendrickson, W.A.; Goff, S.P. Conferring RNA polymerase activity to a DNA polymerase: a single residue in reverse transcriptase controls substrate selection. Proc. Natl. Acad. Sci. USA 1997, 94, 407-411.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 407-411
-
-
Gao, G.1
Orlova, M.2
Georgiadis, M.M.3
Hendrickson, W.A.4
Goff, S.P.5
-
53
-
-
0034724175
-
Analysis of mutations at positions 115 and 116 in the dNTP binding site of HIV-1 reverse transcriptase
-
Boyer, P.L.; Sarafianos, S.G.; Arnold, E.; Hughes, S.H. Analysis of mutations at positions 115 and 116 in the dNTP binding site of HIV-1 reverse transcriptase. Proc. Natl. Acad. Sci. USA 2000, 97, 3056-3061.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 3056-3061
-
-
Boyer, P.L.1
Sarafianos, S.G.2
Arnold, E.3
Hughes, S.H.4
-
54
-
-
0029757502
-
Human immunodeficiency virus type 1 reverse transcriptase: Role of Tyr115 in deoxynucleotide binding and misinsertion fidelity of DNA synthesis
-
Martin-Hernandez, A.M.; Domingo, E.; Menendez-Arias, L. Human immunodeficiency virus type 1 reverse transcriptase: role of Tyr115 in deoxynucleotide binding and misinsertion fidelity of DNA synthesis. EMBO J. 1996, 15, 4434-4442.
-
(1996)
EMBO J
, vol.15
, pp. 4434-4442
-
-
Martin-Hernandez, A.M.1
Domingo, E.2
Menendez-Arias, L.3
-
56
-
-
0028918674
-
Development of HIV-1 resistance to (-)2'-deoxy-3'-thiacytidine in patients with AIDS or advanced AIDS-related complex
-
Wainberg, M. A.; Salomon, H.; Gu, Z.; Montaner, J. S.; Cooley, T. P.; McCaffrey, R.; Ruedy, J.; Hirst, H.M.; Cammack, N.; Cameron, J. Development of HIV-1 resistance to (-)2'-deoxy-3'-thiacytidine in patients with AIDS or advanced AIDS-related complex. AIDS 1995, 9, 351-357.
-
(1995)
AIDS
, vol.9
, pp. 351-357
-
-
Wainberg, M.A.1
Salomon, H.2
Gu, Z.3
Montaner, J.S.4
Cooley, T.P.5
McCaffrey, R.6
Ruedy, J.7
Hirst, H.M.8
Cammack, N.9
Cameron, J.10
-
57
-
-
0026465275
-
Novel mutation in the human immunodeficiency virus type 1 reverse transcriptase gene that encodes cross-resistance to 2',3'-dideoxyinosine and 2',3'-dideoxycytidine
-
Gu, Z.; Gao, Q.; Li, X.; Parniak, M.A.; Wainberg, M.A. Novel mutation in the human immunodeficiency virus type 1 reverse transcriptase gene that encodes cross-resistance to 2',3'-dideoxyinosine and 2',3'-dideoxycytidine. J. Virol. 1992, 66, 7128-7135.
-
(1992)
J. Virol
, vol.66
, pp. 7128-7135
-
-
Gu, Z.1
Gao, Q.2
Li, X.3
Parniak, M.A.4
Wainberg, M.A.5
-
58
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi, R.; Billeter, M.; Wuthrich, K. MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graph. 1996, 14, 51-55.
-
(1996)
J. Mol. Graph
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wuthrich, K.3
-
59
-
-
0023657032
-
Kinetic mechanism of DNA polymerase I (Klenow)
-
Kuchta, R.D.; Mizrahi, V.; Benkovic, P.A.; Johnson, K.A.; Benkovic, S. J. Kinetic mechanism of DNA polymerase I (Klenow). Biochemistry 1987, 26, 8410-8417.
-
(1987)
Biochemistry
, vol.26
, pp. 8410-8417
-
-
Kuchta, R.D.1
Mizrahi, V.2
Benkovic, P.A.3
Johnson, K.A.4
Benkovic, S.J.5
-
60
-
-
0026026192
-
An induced-fit kinetic mechanism for DNA replication fidelity: Direct measurement by single-turnover kinetics
-
Wong, I.; Patel, S.S.; Johnson, K.A. An induced-fit kinetic mechanism for DNA replication fidelity: direct measurement by single-turnover kinetics. Biochemistry 1991, 30, 526-537.
-
(1991)
Biochemistry
, vol.30
, pp. 526-537
-
-
Wong, I.1
Patel, S.S.2
Johnson, K.A.3
-
61
-
-
0026033193
-
Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant
-
Patel, S.S.; Wong, I.; Johnson, K.A. Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant. Biochemistry 1991, 30, 511-525.
-
(1991)
Biochemistry
, vol.30
, pp. 511-525
-
-
Patel, S.S.1
Wong, I.2
Johnson, K.A.3
-
62
-
-
0027092323
-
Mechanism and fidelity of HIV reverse transcriptase
-
Kati, W.M.; Johnson, K.A.; Jerva, L.F.; Anderson, K.S. Mechanism and fidelity of HIV reverse transcriptase. J. Biol. Chem. 1992, 267, 25988-25997.
-
(1992)
J. Biol. Chem
, vol.267
, pp. 25988-25997
-
-
Kati, W.M.1
Johnson, K.A.2
Jerva, L.F.3
Anderson, K.S.4
-
63
-
-
0040978680
-
Refined model for primer/template binding by HIV-1 reverse transcriptase: Pre-steady-state kinetic analyses of primer/template binding and nucleotide incorporation events distinguish between different binding modes depending on the nature of the nucleic acid substrate
-
Wohrl, B.M.; Krebs, R.; Goody, R.S.; Restle, T. Refined model for primer/template binding by HIV-1 reverse transcriptase: pre-steady-state kinetic analyses of primer/template binding and nucleotide incorporation events distinguish between different binding modes depending on the nature of the nucleic acid substrate. J. Mol. Biol. 1999, 292, 333-344.
-
(1999)
J. Mol. Biol
, vol.292
, pp. 333-344
-
-
Wohrl, B.M.1
Krebs, R.2
Goody, R.S.3
Restle, T.4
-
64
-
-
1342313235
-
The structural mechanism of translocation and helicase activity in T7 RNA polymerase
-
Yin, Y. W.; Steitz, T. A. The structural mechanism of translocation and helicase activity in T7 RNA polymerase. Cell 2004, 116, 393-404.
-
(2004)
Cell
, vol.116
, pp. 393-404
-
-
Yin, Y.W.1
Steitz, T.A.2
-
65
-
-
33646516020
-
Effects of nucleotides and nucleotide analogue inhibitors of HIV-1 reverse transcriptase in a ratchet model of polymerase translocation
-
Gotte, M. Effects of nucleotides and nucleotide analogue inhibitors of HIV-1 reverse transcriptase in a ratchet model of polymerase translocation. Current Pharm. Des. 2006, 12, 1867-1877.
-
(2006)
Current Pharm. Des
, vol.12
, pp. 1867-1877
-
-
Gotte, M.1
-
66
-
-
34047257841
-
The pyrophosphate analogue foscarnet traps the pre-translocational state of HIV-1 reverse transcriptase in a Brownian ratchet model of polymerase translocation
-
Marchand B.; Tchesnokov E.P.; Götte M. The pyrophosphate analogue foscarnet traps the pre-translocational state of HIV-1 reverse transcriptase in a Brownian ratchet model of polymerase translocation. J. Biol. Chem. 2007, 282, 3337-3346.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 3337-3346
-
-
Marchand, B.1
Tchesnokov, E.P.2
Götte, M.3
-
67
-
-
0027184481
-
A general two-metal-ion mechanism for catalytic RNA
-
Steitz, T.A.; Steitz, J.A. A general two-metal-ion mechanism for catalytic RNA. Proc. Natl. Acad. Sci. USA 1993, 90, 6498-6502.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 6498-6502
-
-
Steitz, T.A.1
Steitz, J.A.2
-
68
-
-
0032518374
-
A mechanism for all polymerases
-
Steitz, T.A. A mechanism for all polymerases. Nature 1998, 391, 231-232.
-
(1998)
Nature
, vol.391
, pp. 231-232
-
-
Steitz, T.A.1
-
69
-
-
0028049441
-
Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP
-
Pelletier, H.; Sawaya, M.R.; Kumar, A.; Wilson, S.H.; Kraut, J. Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP. Science 1994, 264, 1891-1903.
-
(1994)
Science
, vol.264
, pp. 1891-1903
-
-
Pelletier, H.1
Sawaya, M.R.2
Kumar, A.3
Wilson, S.H.4
Kraut, J.5
-
70
-
-
0028136070
-
Crystal structure of rat DNA polymerase beta: Evidence for a common polymerase mechanism
-
Sawaya, M.R.; Pelletier, H.; Kumar, A.; Wilson, S.H.; Kraut, J. Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism. Science 1994, 264, 1930-1935.
-
(1994)
Science
, vol.264
, pp. 1930-1935
-
-
Sawaya, M.R.1
Pelletier, H.2
Kumar, A.3
Wilson, S.H.4
Kraut, J.5
-
71
-
-
2342531101
-
Antiviral drugs in current clinical use
-
De Clercq, E. Antiviral drugs in current clinical use. J. Clin. Virol. 2004, 30, 115-133.
-
(2004)
J. Clin. Virol
, vol.30
, pp. 115-133
-
-
de Clercq, E.1
-
72
-
-
0034566114
-
Inhibitors of HIV-1 reverse transcriptase
-
Parniak, M.A.; Sluis-Cremer, N. Inhibitors of HIV-1 reverse transcriptase. Adv. Pharmacol. 2000, 49, 67-109.
-
(2000)
Adv. Pharmacol
, vol.49
, pp. 67-109
-
-
Parniak, M.A.1
Sluis-Cremer, N.2
-
73
-
-
0023785829
-
Inhibition of human immunodeficiency virus (HIV-1/HTLV-IIIBa-L) replication in fresh and cultured human peripheral blood monocytes/ macrophages by azidothymidine and related 2',3'-dideoxynucleosides
-
Perno, C.F.; Yarchoan, R.; Cooney, D.A.; Hartman, N.R.; Gartner, S.; Popovic, M.; Hao, Z.; Gerrard, T.L.; Wilson, Y.A.; Johns, D.G.Inhibition of human immunodeficiency virus (HIV-1/HTLV-IIIBa-L) replication in fresh and cultured human peripheral blood monocytes/ macrophages by azidothymidine and related 2',3'-dideoxynucleosides. J. Exp. Med. 1988, 168, 1111-1125.
-
(1988)
J. Exp. Med
, vol.168
, pp. 1111-1125
-
-
Perno, C.F.1
Yarchoan, R.2
Cooney, D.A.3
Hartman, N.R.4
Gartner, S.5
Popovic, M.6
Hao, Z.7
Gerrard, T.L.8
Wilson, Y.A.9
Johns, D.G.10
-
74
-
-
0033805002
-
Role of nucleoside diphosphate kinase in the activation of anti-HIV nucleoside analogs
-
Schneider, B.; Sarfati, R.; Deville-Bonne, D.; Véron, M. Role of nucleoside diphosphate kinase in the activation of anti-HIV nucleoside analogs. J. Bioenerg. Biomembr. 2000, 36, 317-324.
-
(2000)
J. Bioenerg. Biomembr
, vol.36
, pp. 317-324
-
-
Schneider, B.1
Sarfati, R.2
Deville-Bonne, D.3
Véron, M.4
-
75
-
-
0037131314
-
Improving nucleoside diphosphate kinase for antiviral nucleotide analogs activation
-
Gallois-Montbrun, S.; Schneider, B.; Chen, Y.; Giacomoni-Fernandes, V.; Mulard, L.; Morera, S.; Janin, J.; Deville-Bonne, D.; Véron, M. Improving nucleoside diphosphate kinase for antiviral nucleotide analogs activation. J. Biol. Chem. 2002, 277, 39953-39959
-
(2002)
J. Biol. Chem
, vol.277
, pp. 39953-39959
-
-
Gallois-Montbrun, S.1
Schneider, B.2
Chen, Y.3
Giacomoni-Fernandes, V.4
Mulard, L.5
Morera, S.6
Janin, J.7
Deville-Bonne, D.8
Véron, M.9
-
76
-
-
0030703245
-
Pre-steady-state kinetic characterization of wild type and 3'-azido-3'-deoxythymidine (AZT) resistant human immunodeficiency virus type 1 reverse transcriptase: Implication of RNA directed DNA polymerization in the mechanism of AZT resistance
-
Kerr, S.G.; Anderson, K.S. Pre-steady-state kinetic characterization of wild type and 3'-azido-3'-deoxythymidine (AZT) resistant human immunodeficiency virus type 1 reverse transcriptase: implication of RNA directed DNA polymerization in the mechanism of AZT resistance. Biochemistry 1997, 36, 14064-14070.
-
(1997)
Biochemistry
, vol.36
, pp. 14064-14070
-
-
Kerr, S.G.1
Anderson, K.S.2
-
77
-
-
0033524447
-
Mechanistic studies comparing the incorporation of (+) and (-) isomers of 3TCTP by HIV-1 reverse transcriptase
-
Feng, J.Y.; Anderson, K.S. Mechanistic studies comparing the incorporation of (+) and (-) isomers of 3TCTP by HIV-1 reverse transcriptase. Biochemistry 1999, 38, 55-63.
-
(1999)
Biochemistry
, vol.38
, pp. 55-63
-
-
Feng, J.Y.1
Anderson, K.S.2
-
78
-
-
48349089930
-
2'-deoxy-4'-C-ethynyl-2-halo-adenosines active against drug-resistant human immunodeficiency virus type 1 variants
-
Kawamoto, A.; Kodama, E.; Sarafianos, S.G.; Sakagami, Y.; Kohgo, S.; Kitano, K.; Ashida, N.; Iwai, Y.; Hayakawa, H.; Nakata, H.; Mitsuya, H.; Arnold, E.; Matsuoka, M. 2'-deoxy-4'-C-ethynyl-2-halo-adenosines active against drug-resistant human immunodeficiency virus type 1 variants. Int. J. Biochem. Cell Biol. 2008, 40, 2410-2420.
-
(2008)
Int. J. Biochem. Cell Biol
, vol.40
, pp. 2410-2420
-
-
Kawamoto, A.1
Kodama, E.2
Sarafianos, S.G.3
Sakagami, Y.4
Kohgo, S.5
Kitano, K.6
Ashida, N.7
Iwai, Y.8
Hayakawa, H.9
Nakata, H.10
Mitsuya, H.11
Arnold, E.12
Matsuoka, M.13
-
79
-
-
72149100464
-
Mechanism of inhibition of HIV-1 reverse transcriptase by 4'-ethynyl-2-fluoro-2'-deoxyadenosine triphosphate, a translocation defective reverse transcriptase inhibitor
-
Michailidis, E.; Marchand, B.; Kodama, E.N.; Singh, K.; Matsuoka, M.; Kirby, K.A.; Ryan, E.M.; Sawani, A.M.; Nagy, E.; Ashida, N.; Mitsuya, H.; Parniak, M.A.; Sarafianos, S.G. Mechanism of inhibition of HIV-1 reverse transcriptase by 4'-ethynyl-2-fluoro-2'-deoxyadenosine triphosphate, a translocation defective reverse transcriptase inhibitor. J. Biol. Chem. 2009, 284, 35681-35691.
-
(2009)
J. Biol. Chem
, vol.284
, pp. 35681-35691
-
-
Michailidis, E.1
Marchand, B.2
Kodama, E.N.3
Singh, K.4
Matsuoka, M.5
Kirby, K.A.6
Ryan, E.M.7
Sawani, A.M.8
Nagy, E.9
Ashida, N.10
Mitsuya, H.11
Parniak, M.A.12
Sarafianos, S.G.13
-
80
-
-
0028172345
-
Locations of anti-AIDS drug binding sites and resistance mutations in the three-dimensional structure of HIV-1 reverse transcriptase. Implications for mechanisms of drug inhibition and resistance
-
Tantillo, C.; Ding, J.; Jacobo-Molina, A.; Nanni, R.G.; Boyer, P.L.; Hughes, S.H.; Pauwels, R.; Andries, K.; Janssen, P.A.; Arnold, E. Locations of anti-AIDS drug binding sites and resistance mutations in the three-dimensional structure of HIV-1 reverse transcriptase. Implications for mechanisms of drug inhibition and resistance. J. Mol. Biol. 1994, 243, 369-387.
-
(1994)
J. Mol. Biol
, vol.243
, pp. 369-387
-
-
Tantillo, C.1
Ding, J.2
Jacobo-Molina, A.3
Nanni, R.G.4
Boyer, P.L.5
Hughes, S.H.6
Pauwels, R.7
Andries, K.8
Janssen, P.A.9
Arnold, E.10
-
81
-
-
0035912717
-
Nonnucleoside reverse transcriptase inhibitors are chemical enhancers of dimerization of the HIV type 1 reverse transcriptase
-
Tachedjian, G.; Orlova, M.; Sarafianos, S.G.; Arnold, E.; Goff, S.P. Nonnucleoside reverse transcriptase inhibitors are chemical enhancers of dimerization of the HIV type 1 reverse transcriptase. Proc. Natl. Acad. Sci. USA 2001, 98, 7188-7193.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 7188-7193
-
-
Tachedjian, G.1
Orlova, M.2
Sarafianos, S.G.3
Arnold, E.4
Goff, S.P.5
-
82
-
-
0003853626
-
ACD Labs/LogP dB 3.5 and ChemSketch 3.5
-
Spessard, G.O. ACD Labs/LogP dB 3.5 and ChemSketch 3.5. J. Chem. Inf. Comput. Sci. 1998, 38, 1250-1253.
-
(1998)
J. Chem. Inf. Comput. Sci
, vol.38
, pp. 1250-1253
-
-
Spessard, G.O.1
-
83
-
-
0029150042
-
Human immunodeficiency virus reverse transcriptase substrate-induced conformational changes and the mechanism of inhibition by nonnucleoside inhibitors
-
Rittinger, K.; Divita, G.; Goody, R.S. Human immunodeficiency virus reverse transcriptase substrate-induced conformational changes and the mechanism of inhibition by nonnucleoside inhibitors. Proc. Natl. Acad. Sci. USA 1995, 92, 8046-8049.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 8046-8049
-
-
Rittinger, K.1
Divita, G.2
Goody, R.S.3
-
84
-
-
0028925773
-
Mechanism of inhibition of HIV-1 reverse transcriptase by nonnucleoside inhibitors
-
Spence, R.A.; Kati, W.M.; Anderson, K.S.; Johnson, K.A. Mechanism of inhibition of HIV-1 reverse transcriptase by nonnucleoside inhibitors. Science 1995, 267, 988-993.
-
(1995)
Science
, vol.267
, pp. 988-993
-
-
Spence, R.A.1
Kati, W.M.2
Anderson, K.S.3
Johnson, K.A.4
-
85
-
-
0036696712
-
Targeting HIV: Antiretroviral therapy and development of drug resistance
-
Menendez-Arias, L. Targeting HIV: antiretroviral therapy and development of drug resistance. Trends Pharmacol. Sci. 2002, 23, 381-388.
-
(2002)
Trends Pharmacol. Sci
, vol.23
, pp. 381-388
-
-
Menendez-Arias, L.1
-
86
-
-
43049105858
-
Mechanisms of resistance to nucleoside analogue inhibitors of HIV-1 reverse transcriptase
-
Menendez-Arias, L. Mechanisms of resistance to nucleoside analogue inhibitors of HIV-1 reverse transcriptase. Virus Res. 2008, 134, 124-146.
-
(2008)
Virus Res
, vol.134
, pp. 124-146
-
-
Menendez-Arias, L.1
-
87
-
-
0027285372
-
Rapid in vitro selection of human immunodeficiency virus type 1 resistant to 3'-thiacytidine inhibitors due to a mutation in the YMDD region of reverse transcriptase
-
Tisdale, M.; Kemp, S.D.; Parry, N.R.; Larder, B.A. Rapid in vitro selection of human immunodeficiency virus type 1 resistant to 3'-thiacytidine inhibitors due to a mutation in the YMDD region of reverse transcriptase. Proc. Natl. Acad. Sci. USA 1993, 90, 5653-5656.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 5653-5656
-
-
Tisdale, M.1
Kemp, S.D.2
Parry, N.R.3
Larder, B.A.4
-
88
-
-
0029757751
-
Reduced replication of 3TC-resistant HIV-1 variants in primary cells due to a processivity defect of the reverse transcriptase enzyme
-
Back, N.K.; Nijhuis, M.; Keulen, W.; Boucher, C.A.; Oude Essink, B.O.; van Kuilenburg, A.B.; van Gennip, A.H.; Berkhout, B. Reduced replication of 3TC-resistant HIV-1 variants in primary cells due to a processivity defect of the reverse transcriptase enzyme. EMBO J. 1996, 15, 4040-4049.
-
(1996)
EMBO J
, vol.15
, pp. 4040-4049
-
-
Back, N.K.1
Nijhuis, M.2
Keulen, W.3
Boucher, C.A.4
Oude Essink, B.O.5
van Kuilenburg, A.B.6
van Gennip, A.H.7
Berkhout, B.8
-
89
-
-
0037708010
-
Negative effect of the M184V mutation in HIV-1 reverse transcriptase on initiation of viral DNA synthesis
-
Wei, X.; Liang, C.; Gotte, M.; Wainberg, M.A. Negative effect of the M184V mutation in HIV-1 reverse transcriptase on initiation of viral DNA synthesis. Virology 2003, 311, 202-212.
-
(2003)
Virology
, vol.311
, pp. 202-212
-
-
Wei, X.1
Liang, C.2
Gotte, M.3
Wainberg, M.A.4
-
90
-
-
0030892246
-
Human immunodeficiency virus type 1 reverse transcriptase genotype and drug susceptibility changes in infected individuals receiving dideoxyinosine monotherapy for 1 to 2 years
-
Winters, M.A.; Shafer, R.W.; Jellinger, R.A.; Mamtora, G.; Gingeras, T.; Merigan, T.C. Human immunodeficiency virus type 1 reverse transcriptase genotype and drug susceptibility changes in infected individuals receiving dideoxyinosine monotherapy for 1 to 2 years. Antimicrob Agents Chemother 1997, 41, 757-762.
-
(1997)
Antimicrob Agents Chemother
, vol.41
, pp. 757-762
-
-
Winters, M.A.1
Shafer, R.W.2
Jellinger, R.A.3
Mamtora, G.4
Gingeras, T.5
Merigan, T.C.6
-
91
-
-
0029896847
-
Endogenous reverse transcription assays reveal high-level resistance to the triphosphate of (-)2'-dideoxy-3'-thiacytidine by mutated M184V human immunodeficiency virus type 1
-
Quan, Y.; Gu, Z.; Li, X.; Li, Z.; Morrow, C.D.; Wainberg, M.A. Endogenous reverse transcription assays reveal high-level resistance to the triphosphate of (-)2'-dideoxy-3'-thiacytidine by mutated M184V human immunodeficiency virus type 1. J. Virol. 1996, 70, 5642-5645.
-
(1996)
J. Virol
, vol.70
, pp. 5642-5645
-
-
Quan, Y.1
Gu, Z.2
Li, X.3
Li, Z.4
Morrow, C.D.5
Wainberg, M.A.6
-
92
-
-
0034088720
-
Resistance profile of the human immunodeficiency virus type 1 reverse transcriptase inhibitor abacavir (1592U89) after monotherapy and combination therapy. CNA2001 Investigative Group
-
Harrigan, P.R.; Stone, C.; Griffin, P.; Najera, I.; Bloor, S.; Kemp, S.; Tisdale, M.; Larder, B. Resistance profile of the human immunodeficiency virus type 1 reverse transcriptase inhibitor abacavir (1592U89) after monotherapy and combination therapy. CNA2001 Investigative Group. J. Infect. Dis. 2000, 181, 912-920.
-
(2000)
J. Infect. Dis
, vol.181
, pp. 912-920
-
-
Harrigan, P.R.1
Stone, C.2
Griffin, P.3
Najera, I.4
Bloor, S.5
Kemp, S.6
Tisdale, M.7
Larder, B.8
-
93
-
-
0033995190
-
HIV-1 reverse transcriptase (RT) genotype and susceptibility to RT inhibitors during abacavir monotherapy and combination therapy
-
Miller, V.; Ait-Khaled, M.; Stone, C.; Griffin, P.; Mesogiti, D.; Cutrell, A.; Harrigan, R.; Staszewski, S.; Katlama, C.; Pearce, G.; Tisdale, M. HIV-1 reverse transcriptase (RT) genotype and susceptibility to RT inhibitors during abacavir monotherapy and combination therapy. AIDS 2000, 14, 163-171.
-
(2000)
AIDS
, vol.14
, pp. 163-171
-
-
Miller, V.1
Ait-Khaled, M.2
Stone, C.3
Griffin, P.4
Mesogiti, D.5
Cutrell, A.6
Harrigan, R.7
Staszewski, S.8
Katlama, C.9
Pearce, G.10
Tisdale, M.11
-
94
-
-
2942564337
-
Designing anti-AIDS drugs targeting the major mechanism of HIV-1 RT resistance to nucleoside analog drugs
-
Sarafianos, S.G.; Hughes, S.H.; Arnold, E. Designing anti-AIDS drugs targeting the major mechanism of HIV-1 RT resistance to nucleoside analog drugs. Int. J. Biochem. Cell. Biol. 2004, 36, 1706-1715.
-
(2004)
Int. J. Biochem. Cell. Biol
, vol.36
, pp. 1706-1715
-
-
Sarafianos, S.G.1
Hughes, S.H.2
Arnold, E.3
-
95
-
-
79952083958
-
-
15th CROI Conference On Retroviruses and Opportunistic Infections Boston, MA, USA, 3-6 February, accessed on 9 November 2009
-
Murphy, R.; Zala, C.; Ochoa, C.; Tharnish, P.; Fromentin, E.; Asil, G.; UHurwitz, S.J.; Kivel, N.M.; Schinazi, R.F. Pharmacokinetics and potent anti-HIV Activity of Amdoxovir plus Zidovudine in a randomized double-blind placebo-controlled study. 15th CROI Conference on Retroviruses and Opportunistic Infections, Boston, MA, USA, 3-6 February 2008. Available noline at: http://www.natap.org/2008/CROI/croi96.htm (accessed on 9 November 2009).
-
(2008)
Pharmacokinetics and Potent Anti-HIV Activity of Amdoxovir Plus Zidovudine In a Randomized Double-blind Placebo-controlled Study
-
-
Murphy, R.1
Zala, C.2
Ochoa, C.3
Tharnish, P.4
Fromentin, E.5
Asil, G.6
Uhurwitz, S.J.7
Kivel, N.M.8
Schinazi, R.F.9
-
97
-
-
17344362757
-
Elvucitabine: Potent Antiviral activity demonstrated in multi-drug resistant HIV infection
-
Dunkle, L.M.; Gathe, J.C.; Pedevillano, D.E.; Robison, H.G.; Rice, W.G.; Pottage, J.C.J.; Team, A.S. Elvucitabine: Potent Antiviral activity demonstrated in multi-drug resistant HIV infection. Antivir. Ther. 2003, 8, S5.
-
(2003)
Antivir. Ther
, vol.8
-
-
Dunkle, L.M.1
Gathe, J.C.2
Pedevillano, D.E.3
Robison, H.G.4
Rice, W.G.5
Pottage, J.C.J.6
Team, A.S.7
-
98
-
-
26044432728
-
In vitro activity of SPD754, a new deoxycytidine nucleoside reverse transcriptase inhibitor (NRTI), against 215 HIV-1 isolates resistant to other NRTIs
-
Bethell, R.C.; Lie, Y.S.; Parkin, N.T. In vitro activity of SPD754, a new deoxycytidine nucleoside reverse transcriptase inhibitor (NRTI), against 215 HIV-1 isolates resistant to other NRTIs. Antivir. Chem. Chemother. 2005, 16, 295-302.
-
(2005)
Antivir. Chem. Chemother
, vol.16
, pp. 295-302
-
-
Bethell, R.C.1
Lie, Y.S.2
Parkin, N.T.3
-
99
-
-
0031046557
-
Comparative enzymatic study of HIV-1 reverse transcriptase resistant to 2',3'-dideoxynucleotide analogs using the single-nucleotide incorporation assay
-
Ueno, T.; Mitsuya, H. Comparative enzymatic study of HIV-1 reverse transcriptase resistant to 2',3'-dideoxynucleotide analogs using the single-nucleotide incorporation assay. Biochemistry 1997, 36, 1092-1099.
-
(1997)
Biochemistry
, vol.36
, pp. 1092-1099
-
-
Ueno, T.1
Mitsuya, H.2
-
100
-
-
0028784434
-
Enzymatic characterization of human immunodeficiency virus type 1 reverse transcriptase resistant to multiple 2',3'-dideoxynucleoside 5'-triphosphates
-
Ueno, T.; Shirasaka, T.; Mitsuya, H. Enzymatic characterization of human immunodeficiency virus type 1 reverse transcriptase resistant to multiple 2',3'-dideoxynucleoside 5'-triphosphates. J. Biol. Chem. 1995, 270, 23605-23611.
-
(1995)
J. Biol. Chem
, vol.270
, pp. 23605-23611
-
-
Ueno, T.1
Shirasaka, T.2
Mitsuya, H.3
-
101
-
-
0028940084
-
Emergence of human immunodeficiency virus type 1 variants with resistance to multiple dideoxynucleosides in patients receiving therapy with dideoxynucleosides
-
Shirasaka, T.; Kavlick, M. F.; Ueno, T.; Gao, W.Y.; Kojima, E.; Alcaide, M.L.; Chokekijchai, S.; Roy, B.M.; Arnold, E.; Yarchoan, R. Emergence of human immunodeficiency virus type 1 variants with resistance to multiple dideoxynucleosides in patients receiving therapy with dideoxynucleosides. Proc. Natl. Acad. Sci. USA 1995, 92, 2398-2402.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 2398-2402
-
-
Shirasaka, T.1
Kavlick, M.F.2
Ueno, T.3
Gao, W.Y.4
Kojima, E.5
Alcaide, M.L.6
Chokekijchai, S.7
Roy, B.M.8
Arnold, E.9
Yarchoan, R.10
-
102
-
-
0030048748
-
Multidrug-resistant human immunodeficiency virus type 1 strains resulting from combination antiretroviral therapy
-
Iversen, A.K.; Shafer, R.W.; Wehrly, K.; Winters, M.A.; Mullins, J.I.; Chesebro, B.; Merigan, T.C. Multidrug-resistant human immunodeficiency virus type 1 strains resulting from combination antiretroviral therapy. J. Virol. 1996, 70, 1086-1090.
-
(1996)
J. Virol
, vol.70
, pp. 1086-1090
-
-
Iversen, A.K.1
Shafer, R.W.2
Wehrly, K.3
Winters, M.A.4
Mullins, J.I.5
Chesebro, B.6
Merigan, T.C.7
-
103
-
-
0036829992
-
The molecular mechanism of multidrug resistance by the Q151M human immunodeficiency virus type 1 reverse transcriptase and its suppression using alpha-boranophosphate nucleotide analogues
-
Deval, J.; Selmi, B.; Boretto, J.; Egloff, M.P.; Guerreiro, C.; Sarfati, S.; Canard, B. The molecular mechanism of multidrug resistance by the Q151M human immunodeficiency virus type 1 reverse transcriptase and its suppression using alpha-boranophosphate nucleotide analogues. J. Biol. Chem. 2002, 277, 42097-42104.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 42097-42104
-
-
Deval, J.1
Selmi, B.2
Boretto, J.3
Egloff, M.P.4
Guerreiro, C.5
Sarfati, S.6
Canard, B.7
-
104
-
-
0025950055
-
Resistance to ddI and sensitivity to AZT induced by a mutation in HIV-1 reverse transcriptase
-
St Clair, M.H.; Martin, J.L.; Tudor-Williams, G.; Bach, M.C.; Vavro, C.L.; King, D.M.; Kellam, P.; Kemp, S.D.; Larder, B.A. Resistance to ddI and sensitivity to AZT induced by a mutation in HIV-1 reverse transcriptase. Science 1991, 253, 1557-1559.
-
(1991)
Science
, vol.253
, pp. 1557-1559
-
-
St. Clair, M.H.1
Martin, J.L.2
Tudor-Williams, G.3
Bach, M.C.4
Vavro, C.L.5
King, D.M.6
Kellam, P.7
Kemp, S.D.8
Larder, B.A.9
-
105
-
-
0027162732
-
Mechanism of resistance of human immunodeficiency virus type 1 to 2',3'-dideoxyinosine
-
Martin, J.L.; Wilson, J.E.; Haynes, R.L.; Furman, P.A. Mechanism of resistance of human immunodeficiency virus type 1 to 2',3'-dideoxyinosine. Proc. Natl. Acad. Sci. USA 1993, 90, 6135-6139.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 6135-6139
-
-
Martin, J.L.1
Wilson, J.E.2
Haynes, R.L.3
Furman, P.A.4
-
106
-
-
2942616457
-
A loss of viral replicative capacity correlates with altered DNA polymerization kinetics by the human immunodeficiency virus reverse transcriptase bearing the K65R and L74V dideoxynucleoside resistance substitutions
-
Deval, J.; Navarro, J.M.; Selmi, B.; Courcambeck, J.; Boretto, J.; Halfon, P.; Garrido-Urbani, S.; Sire, J.; Canard, B. A loss of viral replicative capacity correlates with altered DNA polymerization kinetics by the human immunodeficiency virus reverse transcriptase bearing the K65R and L74V dideoxynucleoside resistance substitutions. J. Biol. Chem. 2004, 279, 25489-25496.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 25489-25496
-
-
Deval, J.1
Navarro, J.M.2
Selmi, B.3
Courcambeck, J.4
Boretto, J.5
Halfon, P.6
Garrido-Urbani, S.7
Sire, J.8
Canard, B.9
-
107
-
-
0028332029
-
Novel mutation (V75T) in human immunodeficiency virus type 1 reverse transcriptase confers resistance to 2',3'-didehydro-2',3'-dideoxythymidine in cell culture
-
Lacey, S.F.; Larder, B.A. Novel mutation (V75T) in human immunodeficiency virus type 1 reverse transcriptase confers resistance to 2',3'-didehydro-2',3'-dideoxythymidine in cell culture. Antimicrob. Agents Chemother. 1994, 38, 1428-1432.
-
(1994)
Antimicrob. Agents Chemother
, vol.38
, pp. 1428-1432
-
-
Lacey, S.F.1
Larder, B.A.2
-
108
-
-
37549001376
-
Mechanistic insights into the role of Val75 of HIV-1 reverse transcriptase in misinsertion and mispair extension fidelity of DNA synthesis
-
Matamoros, T.; Kim, B.; Menendez-Arias, L. Mechanistic insights into the role of Val75 of HIV-1 reverse transcriptase in misinsertion and mispair extension fidelity of DNA synthesis. J. Mol. Biol. 2008, 375, 1234-1248.
-
(2008)
J. Mol. Biol
, vol.375
, pp. 1234-1248
-
-
Matamoros, T.1
Kim, B.2
Menendez-Arias, L.3
-
109
-
-
0035957999
-
The valine-to-threonine 75 substitution in human immunodeficiency virus type 1 reverse transcriptase and its relation with stavudine resistance
-
Selmi, B.; Boretto, J.; Navarro, J.M.; Sire, J.; Longhi, S.; Guerreiro, C.; Mulard, L.; Sarfati, S.; Canard, B. The valine-to-threonine 75 substitution in human immunodeficiency virus type 1 reverse transcriptase and its relation with stavudine resistance. J. Biol. Chem. 2001, 276, 13965-13974.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 13965-13974
-
-
Selmi, B.1
Boretto, J.2
Navarro, J.M.3
Sire, J.4
Longhi, S.5
Guerreiro, C.6
Mulard, L.7
Sarfati, S.8
Canard, B.9
-
110
-
-
33845275093
-
In vitro human immunodeficiency virus type 1 resistance selections with combinations of tenofovir and emtricitabine or abacavir and lamivudine
-
Margot, N.A.; Waters, J.M.; Miller, M.D. In vitro human immunodeficiency virus type 1 resistance selections with combinations of tenofovir and emtricitabine or abacavir and lamivudine. Antimicrob. Agents Chemother. 2006, 50, 4087-4095.
-
(2006)
Antimicrob. Agents Chemother
, vol.50
, pp. 4087-4095
-
-
Margot, N.A.1
Waters, J.M.2
Miller, M.D.3
-
111
-
-
20644436472
-
In vitro selection and characterization of HIV-1 with reduced susceptibility to PMPA
-
Wainberg, M.A.; Miller, M.D.; Quan, Y.; Salomon, H.; Mulato, A.S.; Lamy, P.D.; Margot, N.A.; Anton, K.E.; Cherrington, J.M. In vitro selection and characterization of HIV-1 with reduced susceptibility to PMPA. Antivir. Ther. 1999, 4, 87-94.
-
(1999)
Antivir. Ther
, vol.4
, pp. 87-94
-
-
Wainberg, M.A.1
Miller, M.D.2
Quan, Y.3
Salomon, H.4
Mulato, A.S.5
Lamy, P.D.6
Margot, N.A.7
Anton, K.E.8
Cherrington, J.M.9
-
112
-
-
0038143190
-
Dioxolane guanosine 5'-triphosphate, an alternative substrate inhibitor of wild-type and mutant HIV-1 reverse transcriptase. Steady state and pre-steady state kinetic analyses
-
Jeffrey, J.L.; Feng, J.Y.; Qi, C.C.; Anderson, K.S.; Furman, P.A. Dioxolane guanosine 5'-triphosphate, an alternative substrate inhibitor of wild-type and mutant HIV-1 reverse transcriptase. Steady state and pre-steady state kinetic analyses. J. Biol. Chem. 2003, 278, 18971-18979.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 18971-18979
-
-
Jeffrey, J.L.1
Feng, J.Y.2
Qi, C.C.3
Anderson, K.S.4
Furman, P.A.5
-
113
-
-
0036839746
-
Molecular mechanisms of resistance to human immunodeficiency virus type 1 with reverse transcriptase mutations K65R and K65R+M184V and their effects on enzyme function and viral replication capacity
-
White, K.L.; Margot, N.A.; Wrin, T.; Petropoulos, C.J.; Miller, M.D.; Naeger, L.K. Molecular mechanisms of resistance to human immunodeficiency virus type 1 with reverse transcriptase mutations K65R and K65R+M184V and their effects on enzyme function and viral replication capacity. Antimicrob. Agents Chemother. 2002, 46, 3437-3446.
-
(2002)
Antimicrob. Agents Chemother
, vol.46
, pp. 3437-3446
-
-
White, K.L.1
Margot, N.A.2
Wrin, T.3
Petropoulos, C.J.4
Miller, M.D.5
Naeger, L.K.6
-
114
-
-
0035930584
-
Mechanism-based suppression of dideoxynucleotide resistance by K65R human immunodeficiency virus reverse transcriptase using an alpha-boranophosphate nucleoside analogue
-
Selmi, B.; Boretto, J.; Sarfati, S.R.; Guerreiro, C.; Canard, B. Mechanism-based suppression of dideoxynucleotide resistance by K65R human immunodeficiency virus reverse transcriptase using an alpha-boranophosphate nucleoside analogue. J. Biol. Chem. 2001, 276, 48466-48472.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 48466-48472
-
-
Selmi, B.1
Boretto, J.2
Sarfati, S.R.3
Guerreiro, C.4
Canard, B.5
-
115
-
-
34250847144
-
Molecular mechanisms of bidirectional antagonism between K65R and thymidine analog mutations in HIV-1 reverse transcriptase
-
Parikh, U.M.; Zelina, S.; Sluis-Cremer, N.; Mellors, J.W. Molecular mechanisms of bidirectional antagonism between K65R and thymidine analog mutations in HIV-1 reverse transcriptase. AIDS 2007, 21, 1405-1414.
-
(2007)
AIDS
, vol.21
, pp. 1405-1414
-
-
Parikh, U.M.1
Zelina, S.2
Sluis-Cremer, N.3
Mellors, J.W.4
-
116
-
-
33845997466
-
Molecular mechanism by which the K70E mutation in human immunodeficiency virus type 1 reverse transcriptase confers resistance to nucleoside reverse transcriptase inhibitors
-
Sluis-Cremer, N.; Sheen, C.W.; Zelina, S.; Torres, P.S.; Parikh, U.M.; Mellors, J.W. Molecular mechanism by which the K70E mutation in human immunodeficiency virus type 1 reverse transcriptase confers resistance to nucleoside reverse transcriptase inhibitors. Antimicrob. Agents Chemother. 2007, 51, 48-53.
-
(2007)
Antimicrob. Agents Chemother
, vol.51
, pp. 48-53
-
-
Sluis-Cremer, N.1
Sheen, C.W.2
Zelina, S.3
Torres, P.S.4
Parikh, U.M.5
Mellors, J.W.6
-
117
-
-
0347052875
-
Mechanistic basis for reduced viral and enzymatic fitness of HIV-1 reverse transcriptase containing both K65R and M184V mutations
-
Deval, J.; White, K.L.; Miller, M.D.; Parkin, N.T.; Courcambeck, J.; Halfon, P.; Selmi, B.; Boretto, J.; Canard, B. Mechanistic basis for reduced viral and enzymatic fitness of HIV-1 reverse transcriptase containing both K65R and M184V mutations. J. Biol. Chem. 2004, 279, 509-516.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 509-516
-
-
Deval, J.1
White, K.L.2
Miller, M.D.3
Parkin, N.T.4
Courcambeck, J.5
Halfon, P.6
Selmi, B.7
Boretto, J.8
Canard, B.9
-
118
-
-
0032506055
-
Phenotypic mechanism of HIV-1 resistance to 3'-azido-3'-deoxythymidine (AZT): Increased polymerization processivity and enhanced sensitivity to pyrophosphate of the mutant viral reverse transcriptase
-
Arion, D.; Kaushik, N.; McCormick, S.; Borkow, G.; Parniak, M.A. Phenotypic mechanism of HIV-1 resistance to 3'-azido-3'-deoxythymidine (AZT): increased polymerization processivity and enhanced sensitivity to pyrophosphate of the mutant viral reverse transcriptase. Biochemistry 1998, 37, 15908-15917.
-
(1998)
Biochemistry
, vol.37
, pp. 15908-15917
-
-
Arion, D.1
Kaushik, N.2
McCormick, S.3
Borkow, G.4
Parniak, M.A.5
-
119
-
-
0032506228
-
Unblocking of chain-terminated primer by HIV-1 reverse transcriptase through a nucleotide-dependent mechanism
-
Meyer, P.R.; Matsuura, S.E.; So, A.G.; Scott, W.A. Unblocking of chain-terminated primer by HIV-1 reverse transcriptase through a nucleotide-dependent mechanism. Proc. Natl. Acad. Sci. USA 1998, 95, 13471-13476.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 13471-13476
-
-
Meyer, P.R.1
Matsuura, S.E.2
So, A.G.3
Scott, W.A.4
-
120
-
-
0035031936
-
Selective excision of AZTMP by drug-resistant human immunodeficiency virus reverse transcriptase
-
Boyer, P.L.; Sarafianos, S.G.; Arnold, E.; Hughes, S.H. Selective excision of AZTMP by drug-resistant human immunodeficiency virus reverse transcriptase. J. Virol. 2001, 75, 4832-4842.
-
(2001)
J. Virol
, vol.75
, pp. 4832-4842
-
-
Boyer, P.L.1
Sarafianos, S.G.2
Arnold, E.3
Hughes, S.H.4
-
121
-
-
0033165851
-
A mechanism of AZT resistance: An increase in nucleotide-dependent primer unblocking by mutant HIV-1 reverse transcriptase
-
Meyer, P.R.; Matsuura, S. E.; Mian, A.M.; So, A.G.; Scott, W.A. A mechanism of AZT resistance: an increase in nucleotide-dependent primer unblocking by mutant HIV-1 reverse transcriptase. Mol. Cell. 1999, 4, 35-43.
-
(1999)
Mol. Cell
, vol.4
, pp. 35-43
-
-
Meyer, P.R.1
Matsuura, S.E.2
Mian, A.M.3
So, A.G.4
Scott, W.A.5
-
122
-
-
0034425841
-
Differential removal of thymidine nucleotide analogues from blocked DNA chains by human immunodeficiency virus reverse transcriptase in the presence of physiological concentrations of 2'-deoxynucleoside triphosphates
-
Meyer, P.R.; Matsuura, S.E.; Schinazi, R.F.; So, A.G.; Scott, W.A. Differential removal of thymidine nucleotide analogues from blocked DNA chains by human immunodeficiency virus reverse transcriptase in the presence of physiological concentrations of 2'-deoxynucleoside triphosphates. Antimicrob Agents Chemother 2000, 44, 3465-3472.
-
(2000)
Antimicrob Agents Chemother
, vol.44
, pp. 3465-3472
-
-
Meyer, P.R.1
Matsuura, S.E.2
Schinazi, R.F.3
So, A.G.4
Scott, W.A.5
-
123
-
-
33846339830
-
3'-Azido-3'-deoxythymidine-(5')-tetraphospho-(5')-adenosine, the product of ATP-mediated excision of chain-terminating AZTMP, is a potent chain-terminating substrate for HIV-1 reverse transcriptase
-
Dharmasena, S.; Pongracz, Z.; Arnold, E.; Sarafianos, S.G.; Parniak, M.A. 3'-Azido-3'-deoxythymidine-(5')-tetraphospho-(5')-adenosine, the product of ATP-mediated excision of chain-terminating AZTMP, is a potent chain-terminating substrate for HIV-1 reverse transcriptase. Biochemistry 2007, 46, 828-836.
-
(2007)
Biochemistry
, vol.46
, pp. 828-836
-
-
Dharmasena, S.1
Pongracz, Z.2
Arnold, E.3
Sarafianos, S.G.4
Parniak, M.A.5
-
124
-
-
0026755210
-
Biochemical studies on the reverse transcriptase and RNase H activities from human immunodeficiency virus strains resistant to 3'-azido-3'-deoxythymidine
-
Lacey, S.F.; Reardon, J.E.; Furfine, E.S.; Kunkel, T.A.; Bebenek, K.; Eckert, K.A.; Kemp, S.D.; Larder, B.A. Biochemical studies on the reverse transcriptase and RNase H activities from human immunodeficiency virus strains resistant to 3'-azido-3'-deoxythymidine. J. Biol. Chem. 1992, 267, 15789-15794.
-
(1992)
J. Biol. Chem
, vol.267
, pp. 15789-15794
-
-
Lacey, S.F.1
Reardon, J.E.2
Furfine, E.S.3
Kunkel, T.A.4
Bebenek, K.5
Eckert, K.A.6
Kemp, S.D.7
Larder, B.A.8
-
125
-
-
79952080789
-
-
Ph.D Dissertation, Rutgers The State University Of New Jersey-New Brunswick, New Jersey, USA, accessed on 9 November 2009
-
Tu, X. Structural studies of HIV-1 reverse transcriptase: resistanceto azt via atp-mediated excision. Ph.D Dissertation, Rutgers The State University Of New Jersey-New Brunswick, New Jersey, USA, 2008. Available online: http://mss3.libraries.rutgers.edu/dlr/TMP/rutgers-lib_24491-PDF-1.pdf (accessed on 9 November 2009).
-
(2008)
Structural Studies of HIV-1 Reverse Transcriptase: Resistanceto Azt Via Atp-mediated Excision
-
-
Tu, X.1
-
126
-
-
0042316944
-
Site-specific footprinting reveals differences in the translocation status of HIV-1 reverse transcriptase. Implications for polymerase translocation and drug resistance
-
Marchand, B.; Gotte, M. Site-specific footprinting reveals differences in the translocation status of HIV-1 reverse transcriptase. Implications for polymerase translocation and drug resistance. J. Biol. Chem. 2003, 278, 35362-35372.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 35362-35372
-
-
Marchand, B.1
Gotte, M.2
-
127
-
-
0038521318
-
Trapping HIV-1 reverse transcriptase before and after translocation on DNA
-
Sarafianos, S.G.; Clark, A.D., Jr.; Tuske, S.; Squire, C.J.; Das, K.; Sheng, D.; Ilankumaran, P.; Ramesha, A.R.; Kroth, H.; Sayer, J.M.; Jerina, D.M.; Boyer, P.L.; Hughes, S.H.; Arnold, E. Trapping HIV-1 reverse transcriptase before and after translocation on DNA. J. Biol. Chem. 2003, 278, 16280-16288.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 16280-16288
-
-
Sarafianos, S.G.1
Clark Jr., A.D.2
Tuske, S.3
Squire, C.J.4
Das, K.5
Sheng, D.6
Ilankumaran, P.7
Ramesha, A.R.8
Kroth, H.9
Sayer, J.M.10
Jerina, D.M.11
Boyer, P.L.12
Hughes, S.H.13
Arnold, E.14
-
128
-
-
34247365561
-
Stable complexes formed by HIV-1 reverse transcriptase at distinct positions on the primer-template controlled by binding deoxynucleoside triphosphates or foscarnet
-
Meyer, P.R.; Rutvisuttinunt, W.; Matsuura, S.E.; So, A.G.; Scott, W.A. Stable complexes formed by HIV-1 reverse transcriptase at distinct positions on the primer-template controlled by binding deoxynucleoside triphosphates or foscarnet. J. Mol. Biol. 2007, 369, 41-54.
-
(2007)
J. Mol. Biol
, vol.369
, pp. 41-54
-
-
Meyer, P.R.1
Rutvisuttinunt, W.2
Matsuura, S.E.3
So, A.G.4
Scott, W.A.5
-
129
-
-
0030987309
-
Nucleotide-induced stable complex formation by HIV-1 reverse transcriptase
-
Tong, W.; Lu, C.D.; Sharma, S.K.; Matsuura, S.; So, A.G.; Scott, W.A. Nucleotide-induced stable complex formation by HIV-1 reverse transcriptase. Biochemistry 1997, 36, 5749-5757.
-
(1997)
Biochemistry
, vol.36
, pp. 5749-5757
-
-
Tong, W.1
Lu, C.D.2
Sharma, S.K.3
Matsuura, S.4
So, A.G.5
Scott, W.A.6
-
130
-
-
34547641773
-
Effects of the translocation status of human immunodeficiency virus type 1 reverse transcriptase on the efficiency of excision of tenofovir
-
Marchand, B.; White, K.L.; Ly, J.K.; Margot, N.A.; Wang, R.; McDermott, M.; Miller, M.D.; Götte, M. Effects of the translocation status of human immunodeficiency virus type 1 reverse transcriptase on the efficiency of excision of tenofovir. Antimicrob. Agents Chemother. 2007, 51, 2911-2919.
-
(2007)
Antimicrob. Agents Chemother
, vol.51
, pp. 2911-2919
-
-
Marchand, B.1
White, K.L.2
Ly, J.K.3
Margot, N.A.4
Wang, R.5
McDermott, M.6
Miller, M.D.7
Götte, M.8
-
131
-
-
0036124432
-
The M184V mutation reduces the selective excision of zidovudine 5'-monophosphate (AZTMP) by the reverse transcriptase of human immunodeficiency virus type 1
-
Boyer, P.L.; Sarafianos, S.G.; Arnold, E.; Hughes, S.H. The M184V mutation reduces the selective excision of zidovudine 5'-monophosphate (AZTMP) by the reverse transcriptase of human immunodeficiency virus type 1. J. Virol. 2002, 76, 3248-3256.
-
(2002)
J. Virol
, vol.76
, pp. 3248-3256
-
-
Boyer, P.L.1
Sarafianos, S.G.2
Arnold, E.3
Hughes, S.H.4
-
132
-
-
0142100752
-
The M184V mutation in the reverse transcriptase of human immunodeficiency virus type 1 impairs rescue of chain-terminated DNA synthesis
-
Gotte, M.; Arion, D.; Parniak, M.A.; Wainberg, M.A. The M184V mutation in the reverse transcriptase of human immunodeficiency virus type 1 impairs rescue of chain-terminated DNA synthesis. J. Virol. 2000, 74, 3579-3585.
-
(2000)
J. Virol
, vol.74
, pp. 3579-3585
-
-
Gotte, M.1
Arion, D.2
Parniak, M.A.3
Wainberg, M.A.4
-
133
-
-
0033770149
-
Molecular mechanisms of HIV-1 resistance to nucleoside reverse transcriptase inhibitors (NRTIs)
-
Sluis-Cremer, N.; Arion, D.; Parniak, M.A. Molecular mechanisms of HIV-1 resistance to nucleoside reverse transcriptase inhibitors (NRTIs). Cell Mol. Life Sci. 2000, 57, 1408-1422.
-
(2000)
Cell Mol. Life Sci
, vol.57
, pp. 1408-1422
-
-
Sluis-Cremer, N.1
Arion, D.2
Parniak, M.A.3
-
134
-
-
0029028067
-
Potential mechanism for sustained antiretroviral efficacy of AZT-3TC combination therapy
-
Larder, B.A.; Kemp, S.D.; Harrigan, P.R. Potential mechanism for sustained antiretroviral efficacy of AZT-3TC combination therapy. Science 1995, 269, 696-699.
-
(1995)
Science
, vol.269
, pp. 696-699
-
-
Larder, B.A.1
Kemp, S.D.2
Harrigan, P.R.3
-
135
-
-
21444452131
-
The L74V mutation in human immunodeficiency virus type 1 reverse transcriptase counteracts enhanced excision of zidovudine monophosphate associated with thymidine analog resistance mutations
-
Miranda, L.R.; Gotte, M.; Liang, F.; Kuritzkes, D.R. The L74V mutation in human immunodeficiency virus type 1 reverse transcriptase counteracts enhanced excision of zidovudine monophosphate associated with thymidine analog resistance mutations. Antimicrob. Agents Chemother. 2005, 49, 2648-2656.
-
(2005)
Antimicrob. Agents Chemother
, vol.49
, pp. 2648-2656
-
-
Miranda, L.R.1
Gotte, M.2
Liang, F.3
Kuritzkes, D.R.4
-
136
-
-
27544431950
-
A combination of decreased NRTI incorporation and decreased excision determines the resistance profile of HIV-1 K65R RT
-
White, K.L.; Margot, N.A.; Ly, J.K.; Chen, J.M.; Ray, A.S.; Pavelko, M.; Wang, R.; McDermott, M.; Swaminathan, S.; Miller, M.D. A combination of decreased NRTI incorporation and decreased excision determines the resistance profile of HIV-1 K65R RT. AIDS 2005, 19, 1751-1760.
-
(2005)
AIDS
, vol.19
, pp. 1751-1760
-
-
White, K.L.1
Margot, N.A.2
Ly, J.K.3
Chen, J.M.4
Ray, A.S.5
Pavelko, M.6
Wang, R.7
McDermott, M.8
Swaminathan, S.9
Miller, M.D.10
-
137
-
-
21444443785
-
Impaired rescue of chain-terminated DNA synthesis associated with the L74V mutation in human immunodeficiency virus type 1 reverse transcriptase
-
Frankel, F.A.; Marchand, B.; Turner, D.; Gotte, M.; Wainberg, M.A. Impaired rescue of chain-terminated DNA synthesis associated with the L74V mutation in human immunodeficiency virus type 1 reverse transcriptase. Antimicrob. Agents Chemother. 2005, 49, 2657-2664.
-
(2005)
Antimicrob. Agents Chemother
, vol.49
, pp. 2657-2664
-
-
Frankel, F.A.1
Marchand, B.2
Turner, D.3
Gotte, M.4
Wainberg, M.A.5
-
138
-
-
0026454435
-
A. 3'-Azido-3'-deoxythymidine resistance suppressed by a mutation conferring human immunodeficiency virus type 1 resistance to nonnucleoside reverse transcriptase inhibitors
-
Larder, B. A. 3'-Azido-3'-deoxythymidine resistance suppressed by a mutation conferring human immunodeficiency virus type 1 resistance to nonnucleoside reverse transcriptase inhibitors. Antimicrob. Agents Chemother. 1992, 36, 2664-2669.
-
(1992)
Antimicrob. Agents Chemother
, vol.36
, pp. 2664-2669
-
-
Larder, B.1
-
139
-
-
0028333887
-
Susceptibilities of human immunodeficiency virus type 1 enzyme and viral variants expressing multiple resistance-engendering amino acid substitutions to reverse transcriptase inhibitors
-
Byrnes, V.W.; Emini, E.A.; Schleif, W.A.; Condra, J.H.; Schneider, C.L.; Long, W.J.; Wolfgang, J.A.; Graham, D.J.; Gotlib, L.; Schlabach, A.J. Susceptibilities of human immunodeficiency virus type 1 enzyme and viral variants expressing multiple resistance-engendering amino acid substitutions to reverse transcriptase inhibitors. Antimicrob. Agents Chemother. 1994, 38, 1404-1407.
-
(1994)
Antimicrob. Agents Chemother
, vol.38
, pp. 1404-1407
-
-
Byrnes, V.W.1
Emini, E.A.2
Schleif, W.A.3
Condra, J.H.4
Schneider, C.L.5
Long, W.J.6
Wolfgang, J.A.7
Graham, D.J.8
Gotlib, L.9
Schlabach, A.J.10
-
140
-
-
0142040125
-
The Y181C substitution in 3'-azido-3'-deoxythymidine-resistant human immunodeficiency virus, type 1, reverse transcriptase suppresses the ATP-mediated repair of the 3'-azido-3'-deoxythymidine 5'-monophosphate-terminated primer
-
Selmi, B.; Deval, J.; Alvarez, K.; Boretto, J.; Sarfati, S.; Guerreiro, C.; Canard, B. The Y181C substitution in 3'-azido-3'-deoxythymidine-resistant human immunodeficiency virus, type 1, reverse transcriptase suppresses the ATP-mediated repair of the 3'-azido-3'-deoxythymidine 5'-monophosphate-terminated primer. J. Biol. Chem. 2003, 278, 40464-40472.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 40464-40472
-
-
Selmi, B.1
Deval, J.2
Alvarez, K.3
Boretto, J.4
Sarfati, S.5
Guerreiro, C.6
Canard, B.7
-
141
-
-
0029792446
-
Zidovudine resistance is suppressed by mutations conferring resistance of human immunodeficiency virus type 1 to foscarnet
-
Tachedjian, G.; Mellors, J.; Bazmi, H.; Birch, C.; Mills, J. Zidovudine resistance is suppressed by mutations conferring resistance of human immunodeficiency virus type 1 to foscarnet. J. Virol. 1996, 70, 7171-7181.
-
(1996)
J. Virol
, vol.70
, pp. 7171-7181
-
-
Tachedjian, G.1
Mellors, J.2
Bazmi, H.3
Birch, C.4
Mills, J.5
-
142
-
-
0030840407
-
Mutations in the pol gene of human immunodeficiency virus type 1 in infected patients receiving didanosine and hydroxyurea combination therapy
-
De Antoni, A.; Foli, A.; Lisziewicz, J.; Lori, F. Mutations in the pol gene of human immunodeficiency virus type 1 in infected patients receiving didanosine and hydroxyurea combination therapy. J. Infect. Dis. 1997, 176, 899-903.
-
(1997)
J. Infect. Dis
, vol.176
, pp. 899-903
-
-
de Antoni, A.1
Foli, A.2
Lisziewicz, J.3
Lori, F.4
-
143
-
-
0032533207
-
A 6-basepair insert in the reverse transcriptase gene of human immunodeficiency virus type 1 confers resistance to multiple nucleoside inhibitors
-
Winters, M.A.; Coolley, K.L.; Girard, Y.A.; Levee, D.J.; Hamdan, H.; Shafer, R.W.; Katzenstein, D.A.; Merigan, T.C. A 6-basepair insert in the reverse transcriptase gene of human immunodeficiency virus type 1 confers resistance to multiple nucleoside inhibitors. J. Clin. Invest. 1998, 102, 1769-1775.
-
(1998)
J. Clin. Invest
, vol.102
, pp. 1769-1775
-
-
Winters, M.A.1
Coolley, K.L.2
Girard, Y.A.3
Levee, D.J.4
Hamdan, H.5
Shafer, R.W.6
Katzenstein, D.A.7
Merigan, T.C.8
-
144
-
-
0034329473
-
Role of a dipeptide insertion between codons 69 and 70 of HIV-1 reverse transcriptase in the mechanism of AZT resistance
-
Mas, A.; Parera, M.; Briones, C.; Soriano, V.; Martinez, M.A.; Domingo, E.; Menendez-Arias, L. Role of a dipeptide insertion between codons 69 and 70 of HIV-1 reverse transcriptase in the mechanism of AZT resistance. EMBO J. 2000, 19, 5752-5761.
-
(2000)
EMBO J
, vol.19
, pp. 5752-5761
-
-
Mas, A.1
Parera, M.2
Briones, C.3
Soriano, V.4
Martinez, M.A.5
Domingo, E.6
Menendez-Arias, L.7
-
145
-
-
1442349112
-
Molecular mechanisms of tenofovir resistance conferred by human immunodeficiency virus type 1 reverse transcriptase containing a diserine insertion after residue 69 and multiple thymidine analog-associated mutations
-
White, K.L.; Chen, J.M.; Margot, N.A.; Wrin, T.; Petropoulos, C.J.; Naeger, L.K.; Swaminathan, S.; Miller, M.D. Molecular mechanisms of tenofovir resistance conferred by human immunodeficiency virus type 1 reverse transcriptase containing a diserine insertion after residue 69 and multiple thymidine analog-associated mutations. Antimicrob. Agents Chemother. 2004, 48, 992-1003.
-
(2004)
Antimicrob. Agents Chemother
, vol.48
, pp. 992-1003
-
-
White, K.L.1
Chen, J.M.2
Margot, N.A.3
Wrin, T.4
Petropoulos, C.J.5
Naeger, L.K.6
Swaminathan, S.7
Miller, M.D.8
-
146
-
-
0036720770
-
Nucleoside analog resistance caused by insertions in the fingers of human immunodeficiency virus type 1 reverse transcriptase involves ATP-mediated excision
-
Boyer, P.L.; Sarafianos, S.G.; Arnold, E.; Hughes, S.H. Nucleoside analog resistance caused by insertions in the fingers of human immunodeficiency virus type 1 reverse transcriptase involves ATP-mediated excision. J. Virol. 2002, 76, 9143-9151.
-
(2002)
J. Virol
, vol.76
, pp. 9143-9151
-
-
Boyer, P.L.1
Sarafianos, S.G.2
Arnold, E.3
Hughes, S.H.4
-
147
-
-
0037334586
-
Effects of dipeptide insertions between codons 69 and 70 of human immunodeficiency virus type 1 reverse transcriptase on primer unblocking, deoxynucleoside triphosphate inhibition, and DNA chain elongation
-
Meyer, P.R.; Lennerstrand, J.; Matsuura, S.E.; Larder, B.A.; Scott, W.A. Effects of dipeptide insertions between codons 69 and 70 of human immunodeficiency virus type 1 reverse transcriptase on primer unblocking, deoxynucleoside triphosphate inhibition, and DNA chain elongation. J. Virol. 2003, 77, 3871-3877.
-
(2003)
J. Virol
, vol.77
, pp. 3871-3877
-
-
Meyer, P.R.1
Lennerstrand, J.2
Matsuura, S.E.3
Larder, B.A.4
Scott, W.A.5
-
148
-
-
2642518791
-
Molecular determinants of multi-nucleoside analogue resistance in HIV-1 reverse transcriptases containing a dipeptide insertion in the fingers subdomain: Effect of mutations D67N and T215Y on removal of thymidine nucleotide analogues from blocked DNA primers
-
Matamoros, T.; Franco, S.; Vazquez-Alvarez, B.M.; Mas, A.; Martinez, M.A.; Menendez-Arias, L. Molecular determinants of multi-nucleoside analogue resistance in HIV-1 reverse transcriptases containing a dipeptide insertion in the fingers subdomain: effect of mutations D67N and T215Y on removal of thymidine nucleotide analogues from blocked DNA primers. J. Biol. Chem. 2004, 279, 24569-24577.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 24569-24577
-
-
Matamoros, T.1
Franco, S.2
Vazquez-Alvarez, B.M.3
Mas, A.4
Martinez, M.A.5
Menendez-Arias, L.6
-
149
-
-
17544391491
-
A novel human immunodeficiency virus type 1 reverse transcriptase mutational pattern confers phenotypic lamivudine resistance in the absence of mutation 184V
-
Hertogs, K.; Bloor, S.; De Vroey, V.; van Den Eynde, C.; Dehertogh, P.; van Cauwenberge, A.; Sturmer, M.; Alcorn, T.; Wegner, S.; van Houtte, M.; Miller, V.; Larder, B.A. A novel human immunodeficiency virus type 1 reverse transcriptase mutational pattern confers phenotypic lamivudine resistance in the absence of mutation 184V. Antimicrob. Agents Chemother. 2000, 44, 568-573.
-
(2000)
Antimicrob. Agents Chemother
, vol.44
, pp. 568-573
-
-
Hertogs, K.1
Bloor, S.2
de Vroey, V.3
van Den Eynde, C.4
Dehertogh, P.5
van Cauwenberge, A.6
Sturmer, M.7
Alcorn, T.8
Wegner, S.9
van Houtte, M.10
Miller, V.11
Larder, B.A.12
-
150
-
-
0141706723
-
Mutations E44D and V118I in the reverse transcriptase of HIV-1 play distinct mechanistic roles in dual resistance to AZT and 3TC
-
Girouard, M.; Diallo, K.; Marchand, B.; McCormick, S.; Gotte, M. Mutations E44D and V118I in the reverse transcriptase of HIV-1 play distinct mechanistic roles in dual resistance to AZT and 3TC. J. Biol. Chem. 2003, 278, 34403-34410.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 34403-34410
-
-
Girouard, M.1
Diallo, K.2
Marchand, B.3
McCormick, S.4
Gotte, M.5
-
151
-
-
34250811908
-
Mutations in human immunodeficiency virus type 1 RNase H primer grip enhance 3'-azido-3'-deoxythymidine resistance
-
Delviks-Frankenberry, K.A.; Nikolenko, G.N.; Barr, R.; Pathak, V.K. Mutations in human immunodeficiency virus type 1 RNase H primer grip enhance 3'-azido-3'-deoxythymidine resistance. J. Virol. 2007, 81, 6837-6845.
-
(2007)
J. Virol
, vol.81
, pp. 6837-6845
-
-
Delviks-Frankenberry, K.A.1
Nikolenko, G.N.2
Barr, R.3
Pathak, V.K.4
-
152
-
-
33846063300
-
Mutations in the connection domain of HIV-1 reverse transcriptase increase 3'-azido-3'-deoxythymidine resistance
-
Nikolenko, G.N.; Delviks-Frankenberry, K.A.; Palmer, S.; Maldarelli, F.; Fivash, M.J., Jr.; Coffin, J.M.; Pathak, V.K. Mutations in the connection domain of HIV-1 reverse transcriptase increase 3'-azido-3'-deoxythymidine resistance. Proc. Natl. Acad. Sci. USA 2007, 104, 317-322.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 317-322
-
-
Nikolenko, G.N.1
Delviks-Frankenberry, K.A.2
Palmer, S.3
Maldarelli, F.4
Fivash Jr., M.J.5
Coffin, J.M.6
Pathak, V.K.7
-
153
-
-
41149145592
-
Amino acid mutation N348I in the connection subdomain of human immunodeficiency virus type 1 reverse transcriptase confers multiclass resistance to nucleoside and nonnucleoside reverse transcriptase inhibitors
-
Hachiya, A.; Kodama, E.N.; Sarafianos, S.G.; Schuckmann, M.M.; Sakagami, Y.; Matsuoka, M.; Takiguchi, M.; Gatanaga, H.; Oka, S. Amino acid mutation N348I in the connection subdomain of human immunodeficiency virus type 1 reverse transcriptase confers multiclass resistance to nucleoside and nonnucleoside reverse transcriptase inhibitors. J. Virol. 2008, 82, 3261-3270.
-
(2008)
J. Virol
, vol.82
, pp. 3261-3270
-
-
Hachiya, A.1
Kodama, E.N.2
Sarafianos, S.G.3
Schuckmann, M.M.4
Sakagami, Y.5
Matsuoka, M.6
Takiguchi, M.7
Gatanaga, H.8
Oka, S.9
-
154
-
-
38049028352
-
N348I in the connection domain of HIV-1 reverse transcriptase confers zidovudine and nevirapine resistance
-
Yap, S.H.; Sheen, C.W.; Fahey, J.; Zanin, M.; Tyssen, D.; Lima, V.D.; Wynhoven, B.; Kuiper, M.; Sluis-Cremer, N.; Harrigan, P. R.; Tachedjian, G. N348I in the connection domain of HIV-1 reverse transcriptase confers zidovudine and nevirapine resistance. PLoS Med. 2007, 4, e335.
-
(2007)
PLoS Med
, vol.4
-
-
Yap, S.H.1
Sheen, C.W.2
Fahey, J.3
Zanin, M.4
Tyssen, D.5
Lima, V.D.6
Wynhoven, B.7
Kuiper, M.8
Sluis-Cremer, N.9
Harrigan, P.R.10
Tachedjian, G.11
-
155
-
-
52049107430
-
Connection domain mutations N348I and A360V in HIV-1 reverse transcriptase enhance resistance to 3'-azido-3'-deoxythymidine through both RNase H-dependent and -independent mechanisms
-
Ehteshami, M.; Beilhartz, G.L.; Scarth, B.J.; Tchesnokov, E.P.; McCormick, S.; Wynhoven, B.; Harrigan, P.R.; Gotte, M. Connection domain mutations N348I and A360V in HIV-1 reverse transcriptase enhance resistance to 3'-azido-3'-deoxythymidine through both RNase H-dependent and -independent mechanisms. J. Biol. Chem. 2008, 283, 22222-22232.
-
(2008)
J. Biol. Chem
, vol.283
, pp. 22222-22232
-
-
Ehteshami, M.1
Beilhartz, G.L.2
Scarth, B.J.3
Tchesnokov, E.P.4
McCormick, S.5
Wynhoven, B.6
Harrigan, P.R.7
Gotte, M.8
-
156
-
-
33645784386
-
Why do HIV-1 and HIV-2 use different pathways to develop AZT resistance?
-
Boyer, P.L.; Sarafianos, S.G.; Clark, P.K.; Arnold, E.; Hughes, S.H. Why do HIV-1 and HIV-2 use different pathways to develop AZT resistance? PLoS Pathog. 2006, 2, e10.
-
(2006)
PLoS Pathog
, vol.2
-
-
Boyer, P.L.1
Sarafianos, S.G.2
Clark, P.K.3
Arnold, E.4
Hughes, S.H.5
-
157
-
-
0037195081
-
Structure of HIV-2 reverse transcriptase at 2.35-A resolution and the mechanism of resistance to non-nucleoside inhibitors
-
Ren, J.; Bird, L.E.; Chamberlain, P.P.; Stewart-Jones, G.B.; Stuart, D.I.; Stammers, D.K. Structure of HIV-2 reverse transcriptase at 2.35-A resolution and the mechanism of resistance to non-nucleoside inhibitors. Proc. Natl. Acad. Sci. USA 2002, 99, 14410-14415.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 14410-14415
-
-
Ren, J.1
Bird, L.E.2
Chamberlain, P.P.3
Stewart-Jones, G.B.4
Stuart, D.I.5
Stammers, D.K.6
-
158
-
-
9944232661
-
Taking aim at a moving target: Designing drugs to inhibit drug-resistant HIV-1 reverse transcriptases
-
Sarafianos, S.G.; Das, K.; Hughes, S.H.; Arnold, E. Taking aim at a moving target: designing drugs to inhibit drug-resistant HIV-1 reverse transcriptases. Curr. Opin. Struct. Biol. 2004, 14, 716-730.
-
(2004)
Curr. Opin. Struct. Biol
, vol.14
, pp. 716-730
-
-
Sarafianos, S.G.1
Das, K.2
Hughes, S.H.3
Arnold, E.4
-
159
-
-
58149133507
-
Structure and function of HIV-1 reverse transcriptase: Molecular mechanisms of polymerization and inhibition
-
Sarafianos, S.G.; Marchand, B.; Das, K.; Himmel, D.M.; Parniak, M.A.; Hughes, S.H.; Arnold, E. Structure and function of HIV-1 reverse transcriptase: molecular mechanisms of polymerization and inhibition. J. Mol. Biol. 2009, 385, 693-713.
-
(2009)
J. Mol. Biol
, vol.385
, pp. 693-713
-
-
Sarafianos, S.G.1
Marchand, B.2
Das, K.3
Himmel, D.M.4
Parniak, M.A.5
Hughes, S.H.6
Arnold, E.7
-
160
-
-
0035965124
-
Structural mechanisms of drug resistance for mutations at codons 181 and 188 in HIV-1 reverse transcriptase and the improved resilience of second generation non-nucleoside inhibitors
-
Ren, J.; Nichols, C.; Bird, L.; Chamberlain, P.; Weaver, K.; Short, S.; Stuart, D.I.; Stammers, D.K. Structural mechanisms of drug resistance for mutations at codons 181 and 188 in HIV-1 reverse transcriptase and the improved resilience of second generation non-nucleoside inhibitors. J. Mol. Biol. 2001, 312, 795-805.
-
(2001)
J. Mol. Biol
, vol.312
, pp. 795-805
-
-
Ren, J.1
Nichols, C.2
Bird, L.3
Chamberlain, P.4
Weaver, K.5
Short, S.6
Stuart, D.I.7
Stammers, D.K.8
-
161
-
-
43049144549
-
Structural basis for drug resistance mechanisms for non-nucleoside inhibitors of HIV reverse transcriptase
-
Ren, J.; Stammers, D.K. Structural basis for drug resistance mechanisms for non-nucleoside inhibitors of HIV reverse transcriptase. Virus Res. 2008, 134, 157-170.
-
(2008)
Virus Res
, vol.134
, pp. 157-170
-
-
Ren, J.1
Stammers, D.K.2
-
162
-
-
33646078264
-
Interaction kinetic characterization of HIV-1 reverse transcriptase non-nucleoside inhibitor resistance
-
Geitmann, M.; Unge, T; Danielson, U.H. Interaction kinetic characterization of HIV-1 reverse transcriptase non-nucleoside inhibitor resistance. J. Med. Chem. 2006, 49, 2375-2387.
-
(2006)
J. Med. Chem
, vol.49
, pp. 2375-2387
-
-
Geitmann, M.1
Unge, T.2
Danielson, U.H.3
-
163
-
-
2342620790
-
Roles of conformational and positional adaptability in structure-based design of TMC125-R165335 (etravirine) and related non-nucleoside reverse transcriptase inhibitors that are highly potent and effective against wild-type and drug-resistant HIV-1 variants
-
Das, K.; Clark, A.D., Jr.; Lewi, P.J.; Heeres, J.; De Jonge, M.R.; Koymans, L.M.; Vinkers, H.M.; Daeyaert, F.; Ludovici, D. W.; Kukla, M. J.; De Corte, B.; Kavash, R. W.; Ho, C. Y.; Ye, H.; Lichtenstein, M.A.; Andries, K.; Pauwels, R.; De Bethune, M.P.; Boyer, P.L.; Clark, P.; Hughes, S.H.; Janssen, P. A.; Arnold, E. Roles of conformational and positional adaptability in structure-based design of TMC125-R165335 (etravirine) and related non-nucleoside reverse transcriptase inhibitors that are highly potent and effective against wild-type and drug-resistant HIV-1 variants. J. Med. Chem. 2004, 47, 2550-2560.
-
(2004)
J. Med. Chem
, vol.47
, pp. 2550-2560
-
-
Das, K.1
Clark Jr., A.D.2
Lewi, P.J.3
Heeres, J.4
de Jonge, M.R.5
Koymans, L.M.6
Vinkers, H.M.7
Daeyaert, F.8
Ludovici, D.W.9
Kukla, M.J.10
de Corte, B.11
Kavash, R.W.12
Ho, C.Y.13
Ye, H.14
Lichtenstein, M.A.15
Andries, K.16
Pauwels, R.17
de Bethune, M.P.18
Boyer, P.L.19
Clark, P.20
Hughes, S.H.21
Janssen, P.A.22
Arnold, E.23
more..
|