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Volumn 80, Issue 2, 2005, Pages 227-250

Why repetitive DNA is essential to genome function

Author keywords

Biocomputing; Chromatin domains; Data storage; Evolution; Junk DNA; Non coding DNA; Satellite DNA; Systems biology; Transcriptional regulation; Transposable element

Indexed keywords

NUCLEOPROTEIN; REPETITIVE DNA; SATELLITE DNA; SPACER DNA;

EID: 19044397450     PISSN: 14647931     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1464793104006657     Document Type: Review
Times cited : (234)

References (246)
  • 1
    • 0035880416 scopus 로고    scopus 로고
    • Quantitative effects on gene silencing by allelic variation at a tetranucleotide microsatellite
    • ALBANESE, V., BIGUET, N. F., KIEFER, H., BAYARD, E., MALLET, J. & MELONI, R. (2001). Quantitative effects on gene silencing by allelic variation at a tetranucleotide microsatellite. Human Molecular Genetics 10, 1785-1792.
    • (2001) Human Molecular Genetics , vol.10 , pp. 1785-1792
    • Albanese, V.1    Biguet, N.F.2    Kiefer, H.3    Bayard, E.4    Mallet, J.5    Meloni, R.6
  • 4
    • 0032167917 scopus 로고    scopus 로고
    • A knob-associated tandem repeat in maize capable of forming fold-back DNA segments: Are chromosome knobs megatransposons?
    • ANANIEV, E. V., PHILLIPS, R. L. & RINES, H. W. (1998a). A knob-associated tandem repeat in maize capable of forming fold-back DNA segments: are chromosome knobs megatransposons? Proceedings of the National Academy of Sciences, USA 95, 10785-10790.
    • (1998) Proceedings of the National Academy of Sciences, USA , vol.95 , pp. 10785-10790
    • Ananiev, E.V.1    Phillips, R.L.2    Rines, H.W.3
  • 6
    • 0031950437 scopus 로고    scopus 로고
    • Complex structure of knob DNA on maize chromosome 9: Retrotransposon invasion into heterochromatin
    • ANANIEV, E. V., PHILLIPS, R. L. & RINES, H. W. (1998c). Complex structure of knob DNA on maize chromosome 9: retrotransposon invasion into heterochromatin. Genetics 149, 2025-2037.
    • (1998) Genetics , vol.149 , pp. 2025-2037
    • Ananiev, E.V.1    Phillips, R.L.2    Rines, H.W.3
  • 8
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • ARABIDOPSIS GENOME INITIATIVE (2000). Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 12
    • 0035807812 scopus 로고    scopus 로고
    • Three retrotransposon families in the genome of Giardia lamblia: Two telomeric, one dead
    • ARKHIPOVA, I. R. & MORRISON, H. G. (2001). Three retrotransposon families in the genome of Giardia lamblia: two telomeric, one dead. Proceedings of the National Academy of Sciences, USA 98, 14497-14502.
    • (2001) Proceedings of the National Academy of Sciences, USA , vol.98 , pp. 14497-14502
    • Arkhipova, I.R.1    Morrison, H.G.2
  • 13
    • 0030986188 scopus 로고    scopus 로고
    • The hardwiring of development: Organisation and function of genomic regulatory systems
    • ARNONE, M. I. & DAVIDSON, E. H. (1997). The hardwiring of development: organisation and function of genomic regulatory systems. Development 124, 1851-1864.
    • (1997) Development , vol.124 , pp. 1851-1864
    • Arnone, M.I.1    Davidson, E.H.2
  • 14
    • 0043238093 scopus 로고    scopus 로고
    • From genes to genomes: Universal scale-invariant properties of microbial chromosome organisation
    • AUDIT, B. & OUZONIS, C. A. (2003). From genes to genomes: universal scale-invariant properties of microbial chromosome organisation. Journal of Molecular Biology 332, 617-633.
    • (2003) Journal of Molecular Biology , vol.332 , pp. 617-633
    • Audit, B.1    Ouzonis, C.A.2
  • 15
    • 0032004775 scopus 로고    scopus 로고
    • Matrix-attachment regions and structural colinearity in the genomes of two grass species
    • AVRAMOVA, Z., TIKHONOV, A., CHEN, M. & BENNETZEN, J. L. (1998). Matrix-attachment regions and structural colinearity in the genomes of two grass species. Nucleic Acids Research 26, 761-767.
    • (1998) Nucleic Acids Research , vol.26 , pp. 761-767
    • Avramova, Z.1    Tikhonov, A.2    Chen, M.3    Bennetzen, J.L.4
  • 16
    • 0032715524 scopus 로고    scopus 로고
    • Association of some potential hormone response elements in human genes with Alu family repeats
    • BABICH, V., AKSENOV, N., ALEXEENKO, V., OEI, S. L., BUCHLOW, G. & TOMILIN, N. (1999). Association of some potential hormone response elements in human genes with Alu family repeats. Gene 239, 341-349.
    • (1999) Gene , vol.239 , pp. 341-349
    • Babich, V.1    Aksenov, N.2    Alexeenko, V.3    Oei, S.L.4    Buchlow, G.5    Tomilin, N.6
  • 17
    • 0027316139 scopus 로고
    • Gradual evolution of a specific satellite DNA family in Drosophila ambigua, D. tristis, and D. obscura
    • BACHMANN, L. & SPERLICH, D. (1993). Gradual evolution of a specific satellite DNA family in Drosophila ambigua, D. tristis, and D. obscura. Molecular Biology and Evolution 10, 647-659.
    • (1993) Molecular Biology and Evolution , vol.10 , pp. 647-659
    • Bachmann, L.1    Sperlich, D.2
  • 18
    • 0142059650 scopus 로고    scopus 로고
    • An Alu transposition model for the origin and expansion of human segmental duplications
    • BAILEY, J. A., LIU, G. & EICHLER, E. E. (2003). An Alu transposition model for the origin and expansion of human segmental duplications. American Journal of Human Genetics 73, 823-834.
    • (2003) American Journal of Human Genetics , vol.73 , pp. 823-834
    • Bailey, J.A.1    Liu, G.2    Eichler, E.E.3
  • 19
    • 0033215058 scopus 로고    scopus 로고
    • Last but not least: Regulated poly(A) tail formation
    • BARABINO, S. M. L. & KELLER, W. (1999). Last but Not Least: Regulated Poly(A) Tail Formation. Cell 99, 9-11.
    • (1999) Cell , vol.99 , pp. 9-11
    • Barabino, S.M.L.1    Keller, W.2
  • 20
    • 0034445518 scopus 로고    scopus 로고
    • Surface protein variation by expression site switching in the relapsing fever agent Borrelia hermsii
    • BARBOUR, A. G., CARTER, C. J. & SOHASKEY, C. D. (2000). Surface protein variation by expression site switching in the relapsing fever agent Borrelia hermsii. Infection and Immunity 68, 7114-7121.
    • (2000) Infection and Immunity , vol.68 , pp. 7114-7121
    • Barbour, A.G.1    Carter, C.J.2    Sohaskey, C.D.3
  • 21
    • 0024554174 scopus 로고
    • The great GATC: DNA methylation in E. coli
    • BARRAS, F. & MARINUS, M. G. (1989). The great GATC: DNA methylation in E. coli. Trends in Genetics 5, 139-143.
    • (1989) Trends in Genetics , vol.5 , pp. 139-143
    • Barras, F.1    Marinus, M.G.2
  • 22
    • 0036240127 scopus 로고    scopus 로고
    • The mechanism and regulation of chromosomal V(D)J recombination
    • BASSING, C. H., SWAT, W. & ALT, F. W. (2002). The mechanism and regulation of chromosomal V(D)J recombination. Cell 109, S45-S55.
    • (2002) Cell , vol.109
    • Bassing, C.H.1    Swat, W.2    Alt, F.W.3
  • 23
    • 0035107767 scopus 로고    scopus 로고
    • The simple sequence contingency loci of Haemophilus influenzae and Neisseria meningitidis
    • BAYLISS, C. D., FIELD, D. & MOXON, E. R. (2001). The simple sequence contingency loci of Haemophilus influenzae and Neisseria meningitidis. Journal of Clinical Investigation 107, 657-662.
    • (2001) Journal of Clinical Investigation , vol.107 , pp. 657-662
    • Bayliss, C.D.1    Field, D.2    Moxon, E.R.3
  • 24
    • 0027500890 scopus 로고
    • Binding of the ubiquitous nuclear transcription factor YY1 to a cis regulatory sequence in the human LINE-1 transposable element
    • BECKER, K. G., SWERGOLD, G. D., OZATA, K. & THAYER, R. E. (1993). Binding of the ubiquitous nuclear transcription factor YY1 to a cis regulatory sequence in the human LINE-1 transposable element. Human Molecular Genetics 2, 1697-1702.
    • (1993) Human Molecular Genetics , vol.2 , pp. 1697-1702
    • Becker, K.G.1    Swergold, G.D.2    Ozata, K.3    Thayer, R.E.4
  • 25
    • 0017339723 scopus 로고
    • The diminution of heterochromatic chromosomal segments in Cyclops (Crustacea, Copepoda)
    • BEERMANN, S. (1977). The diminution of heterochromatic chromosomal segments in Cyclops (Crustacea, Copepoda). Chromosoma 60, 297-344.
    • (1977) Chromosoma , vol.60 , pp. 297-344
    • Beermann, S.1
  • 27
    • 0037381673 scopus 로고    scopus 로고
    • Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative estimate of approximately 125 Mb
    • BENNETT, M. D., LEITCH, I. J., PRICE, H. J. & JOHNSTON, J. S. (2003). Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative estimate of approximately 125 Mb. Annals of Botany 91, 547-557.
    • (2003) Annals of Botany , vol.91 , pp. 547-557
    • Bennett, M.D.1    Leitch, I.J.2    Price, H.J.3    Johnston, J.S.4
  • 28
    • 0033976643 scopus 로고    scopus 로고
    • Transposable elements contributions to plant gene and genome evolution
    • BENNETZEN, J. L. (2000). Transposable elements contributions to plant gene and genome evolution. Plant Molecular Biology 42, 251-269.
    • (2000) Plant Molecular Biology , vol.42 , pp. 251-269
    • Bennetzen, J.L.1
  • 29
    • 0036591882 scopus 로고    scopus 로고
    • The mRNA assembly line: Transcription and processing machines in the same factory
    • BENTLEY, D. (2002). The mRNA assembly line: transcription and processing machines in the same factory. Current Opinion in Cell Biology 14, 336-342.
    • (2002) Current Opinion in Cell Biology , vol.14 , pp. 336-342
    • Bentley, D.1
  • 30
    • 0036144048 scopus 로고    scopus 로고
    • DNA methylation patterns and epigenetic memory
    • BIRD, A. (2002). DNA methylation patterns and epigenetic memory. Genes and Development 16, 6-21.
    • (2002) Genes and Development , vol.16 , pp. 6-21
    • Bird, A.1
  • 31
    • 0038530976 scopus 로고    scopus 로고
    • Telomeric associated sequences of Drosophila recruit polycomb-group proteins in vivo and can induce pairing-sensitive repression
    • BOIVIN, A., GALLY, C., NETTER, S., ANXOLABEHERE, D. & RONSSERAY, S. (2003). Telomeric associated sequences of Drosophila recruit polycomb-group proteins in vivo and can induce pairing-sensitive repression. Genetics 164, 195-208.
    • (2003) Genetics , vol.164 , pp. 195-208
    • Boivin, A.1    Gally, C.2    Netter, S.3    Anxolabehere, D.4    Ronsseray, S.5
  • 32
    • 0037069672 scopus 로고    scopus 로고
    • Large clusters of co-expressed genes in the Drosophila genome
    • BOUTANAEV, A. M., KALMYKOVA, A. I., SHEVELYOV, Y. Y. & NURMINSKY, D. I. (2002). Large clusters of co-expressed genes in the Drosophila genome. Nature 420, 666-669.
    • (2002) Nature , vol.420 , pp. 666-669
    • Boutanaev, A.M.1    Kalmykova, A.I.2    Shevelyov, Y.Y.3    Nurminsky, D.I.4
  • 33
    • 0029796901 scopus 로고    scopus 로고
    • DNA sequence insertion and evolutionary variation in gene regulation
    • BRITTEN, R. J. (1996). DNA sequence insertion and evolutionary variation in gene regulation. Proceedings of the National Academy of Sciences, USA 93, 9374-9377.
    • (1996) Proceedings of the National Academy of Sciences, USA , vol.93 , pp. 9374-9377
    • Britten, R.J.1
  • 34
    • 0014690698 scopus 로고
    • Gene regulation for higher cells: A theory
    • BRITTEN, R. J. & DAVIDSON, E. H. (1969). Gene regulation for higher cells: a theory. Science 165, 349-357.
    • (1969) Science , vol.165 , pp. 349-357
    • Britten, R.J.1    Davidson, E.H.2
  • 35
    • 0015070886 scopus 로고
    • Repetitive and nonrepetitive DNA sequences and a speculation on the origins of evolutionary novelty
    • BRITTEN, R. J. & DAVIDSON, E. H. (1971). Repetitive and nonrepetitive DNA sequences and a speculation on the origins of evolutionary novelty. Quarterly Review of Biology 46, 111-138.
    • (1971) Quarterly Review of Biology , vol.46 , pp. 111-138
    • Britten, R.J.1    Davidson, E.H.2
  • 36
    • 0014407722 scopus 로고
    • Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms
    • BRITTEN, R. J. & KOHNE, D. E. (1968). Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms. Science 161, 529-540.
    • (1968) Science , vol.161 , pp. 529-540
    • Britten, R.J.1    Kohne, D.E.2
  • 37
    • 0032865868 scopus 로고    scopus 로고
    • RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements
    • BROSIUS, J. (1999). RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements. Gene 238, 115-134.
    • (1999) Gene , vol.238 , pp. 115-134
    • Brosius, J.1
  • 38
    • 0042978644 scopus 로고    scopus 로고
    • Visualization of chromatin domains created by the gypsy insulator of Drosophila
    • BYRD, K. & CORCES, V. G. (2003). Visualization of chromatin domains created by the gypsy insulator of Drosophila. Journal of Cell Biology 162, 565-574.
    • (2003) Journal of Cell Biology , vol.162 , pp. 565-574
    • Byrd, K.1    Corces, V.G.2
  • 42
    • 0012340085 scopus 로고    scopus 로고
    • Finishing a whole-genome shotgun: Release 3 of the Drosophila melanogaster euchromatic genome sequence
    • 2002:RESEARCH0079. Epub 2002 Dec 23
    • CELNIKER, S. E., WHEELER, D. A., KRONMILLER, B., CARLSON, J. W., HALPERN, A., PATEL, S., ADAMS, M., CHAMPE, M., DUGAN, S. P., FRISE, E., et al. (2002). Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence. Genome Biol. 2002;3(12):RESEARCH0079. Epub 2002 Dec 23.
    • (2002) Genome Biol , vol.3 , Issue.12
    • Celniker, S.E.1    Wheeler, D.A.2    Kronmiller, B.3    Carlson, J.W.4    Halpern, A.5    Patel, S.6    Adams, M.7    Champe, M.8    Dugan, S.P.9    Frise, E.10
  • 43
    • 0034696750 scopus 로고    scopus 로고
    • The Bacillus subtilis AddAB helicase/nuclease is regulated by its cognate Chi sequence in vitro
    • CHEDIN, F., EHRLICH, S. D. & KOWALCZYKOWSKI, S. C. (2000). The Bacillus subtilis AddAB Helicase/Nuclease is regulated by its cognate Chi sequence in vitro. Journal of Molecular Biology 298, 7-20.
    • (2000) Journal of Molecular Biology , vol.298 , pp. 7-20
    • Chedin, F.1    Ehrlich, S.D.2    Kowalczykowski, S.C.3
  • 44
    • 0242360953 scopus 로고    scopus 로고
    • DNA transport during transformation
    • CHEN, I. & DUBNAU, D. (2003). DNA transport during transformation. Frontiers in Bioscience 8, S544-S556.
    • (2003) Frontiers in Bioscience , vol.8
    • Chen, I.1    Dubnau, D.2
  • 45
    • 0037660059 scopus 로고    scopus 로고
    • Erol-L, an ischemia-inducible gene from rat brain with homology to global ischemia-induced gene 11 (Giig11), is localized to neuronal dendrites by a dispersed identifier (ID) element-dependent mechanism
    • CHEN, D., KUNLIN, J., KAWAGUCHI, K., NAKAYAMA, M., ZHOU, X., XIONG, Z., ZHOU, A., MAO, X. O., GREENBERG, D. A., GRAHAM, S. H. & SIMON, R. P. (2003). Erol-L, an ischemia-inducible gene from rat brain with homology to global ischemia-induced gene 11 (Giig11), is localized to neuronal dendrites by a dispersed identifier (ID) element-dependent mechanism. Journal of Neurochemistry 85, 670-679.
    • (2003) Journal of Neurochemistry , vol.85 , pp. 670-679
    • Chen, D.1    Kunlin, J.2    Kawaguchi, K.3    Nakayama, M.4    Zhou, X.5    Xiong, Z.6    Zhou, A.7    Mao, X.O.8    Greenberg, D.A.9    Graham, S.H.10    Simon, R.P.11
  • 46
    • 0036671661 scopus 로고    scopus 로고
    • Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon
    • CHENG, Z., DONG, F., LANGDON, T., OUYANG, S., BUELL, C. R., GU, M., BLATTNER, F. R. & JIANG, J. (2002). Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon. Plant Cell 14, 1691-1704.
    • (2002) Plant Cell , vol.14 , pp. 1691-1704
    • Cheng, Z.1    Dong, F.2    Langdon, T.3    Ouyang, S.4    Buell, C.R.5    Gu, M.6    Blattner, F.R.7    Jiang, J.8
  • 47
    • 0038124436 scopus 로고    scopus 로고
    • A centromeric tandem repeat family originating from a part of Ty3/gypsy-retroelement in wheat and its relatives
    • CHENG, Z.-J. & MURATA, M. (2003). A centromeric tandem repeat family originating from a part of Ty3/gypsy-retroelement in wheat and its relatives. Genetics 164, 665-672.
    • (2003) Genetics , vol.164 , pp. 665-672
    • Cheng, Z.-J.1    Murata, M.2
  • 48
    • 0022388858 scopus 로고
    • The association of the interspersed repetitive KpnI sequences with the nuclear matrix
    • CHIMERA, J. A. & MUSICH, P. R. (1985). The association of the interspersed repetitive KpnI sequences with the nuclear matrix. Journal of Biological Chemistry 260, 9373-9379.
    • (1985) Journal of Biological Chemistry , vol.260 , pp. 9373-9379
    • Chimera, J.A.1    Musich, P.R.2
  • 49
    • 0035431654 scopus 로고    scopus 로고
    • Domain organisation at the centromere and neocentromere
    • CHOO, K. H. (2001). Domain organisation at the centromere and neocentromere. Developmental Cell 1, 165-177.
    • (2001) Developmental Cell , vol.1 , pp. 165-177
    • Choo, K.H.1
  • 51
    • 0026760180 scopus 로고
    • Telomere-associated repeats in Chironomus form discrete subfamilies generated by gene conversion
    • COHN, M. & EDSTROM, J.-L. (1992). Telomere-associated repeats in Chironomus form discrete subfamilies generated by gene conversion. Journal of Molecular Evolution 35, 114-122.
    • (1992) Journal of Molecular Evolution , vol.35 , pp. 114-122
    • Cohn, M.1    Edstrom, J.-L.2
  • 53
    • 0032481623 scopus 로고    scopus 로고
    • Isolation of an Alu repetitive DNAbinding protein and effect of CpG methylation on binding to its recognition sequence
    • COX, G. S., GUTKIN, D. W., HAAS, M. J. & COSGROVE, D. E. (1998). Isolation of an Alu repetitive DNAbinding protein and effect of CpG methylation on binding to its recognition sequence. Biochimica et Biophysica Acta 1396, 67-87.
    • (1998) Biochimica et Biophysica Acta , vol.1396 , pp. 67-87
    • Cox, G.S.1    Gutkin, D.W.2    Haas, M.J.3    Cosgrove, D.E.4
  • 55
    • 0031794379 scopus 로고    scopus 로고
    • Characterization of sequences associated with position-effect variegation at pericentric sites in Drosophila heterochromatin
    • CRYDERMAN, D. E., CUAYCONG, M. H., ELGIN, S. C. R. & WALLRATH, L. L. (1998). Characterization of sequences associated with position-effect variegation at pericentric sites in Drosophila heterochromatin. Chromosoma 107, 277-285.
    • (1998) Chromosoma , vol.107 , pp. 277-285
    • Cryderman, D.E.1    Cuaycong, M.H.2    Elgin, S.C.R.3    Wallrath, L.L.4
  • 56
    • 0036189045 scopus 로고    scopus 로고
    • Identification of a multicopy chromatin boundary element at the borders of silenced chromosomal domains
    • CUVIER, O., HART, C. M., KÄS, E. & LAEMMLI, U. K. (2002). Identification of a multicopy chromatin boundary element at the borders of silenced chromosomal domains. Chromosoma 110, 519-531.
    • (2002) Chromosoma , vol.110 , pp. 519-531
    • Cuvier, O.1    Hart, C.M.2    Käs, E.3    Laemmli, U.K.4
  • 57
    • 0018633234 scopus 로고
    • Regulation of gene expression: Possible role of repetitive sequences
    • DAVIDSON, E. H. & BRITTEN, R. J. (1979). Regulation of gene expression: possible role of repetitive sequences. Science 204, 1052-1059.
    • (1979) Science , vol.204 , pp. 1052-1059
    • Davidson, E.H.1    Britten, R.J.2
  • 58
    • 0037330273 scopus 로고    scopus 로고
    • RNA interference, transposons, and the centromere
    • DAWE, R. K. (2003). RNA interference, transposons, and the centromere. Plant Cell 15, 297-301.
    • (2003) Plant Cell , vol.15 , pp. 297-301
    • Dawe, R.K.1
  • 59
    • 0033514494 scopus 로고    scopus 로고
    • Variation in expression of the Haemophilus influenzae HMW adhesins: A prokaryotic system reminiscent of eukaryotes
    • DAWID, S., BARENKAMP, S. J. & STGEME, W. J. (1999). Variation in expression of the Haemophilus influenzae HMW adhesins: a prokaryotic system reminiscent of eukaryotes. Proceedings of the National Academy of Sciences, USA 96, 1077-1082.
    • (1999) Proceedings of the National Academy of Sciences, USA , vol.96 , pp. 1077-1082
    • Dawid, S.1    Barenkamp, S.J.2    Stgeme, W.J.3
  • 63
    • 0033119484 scopus 로고    scopus 로고
    • Revising the selfish DNA hypothesis: New evidence on accumulation of transposable elements in heterochromatin
    • DIMITRI, P. & JUNAKOVIC, N. (1999). Revising the selfish DNA hypothesis: new evidence on accumulation of transposable elements in heterochromatin. Trends in Genetics 15, 123-124.
    • (1999) Trends in Genetics , vol.15 , pp. 123-124
    • Dimitri, P.1    Junakovic, N.2
  • 64
    • 0024708749 scopus 로고
    • Position effect varicgation in Drosophila melanogaster: Relationship between suppression effect and the amount of Y chromosome
    • DIMITRI, P. & PISANO, C. (1989). Position effect varicgation in Drosophila melanogaster: relationship between suppression effect and the amount of Y chromosome. Genetics 122, 793-800.
    • (1989) Genetics , vol.122 , pp. 793-800
    • Dimitri, P.1    Pisano, C.2
  • 65
    • 0018894384 scopus 로고
    • Selfish genes, the phenotype paradigm and genome evolution
    • DOOLITTLE, W. F. & SAPIENZA, C. (1980). Selfish genes, the phenotype paradigm and genome evolution. Nature 284, 601-603.
    • (1980) Nature , vol.284 , pp. 601-603
    • Doolittle, W.F.1    Sapienza, C.2
  • 66
    • 0020478245 scopus 로고
    • Molecular drive: A cohesive mode of species evolution
    • DOVER, G. A. (1982). Molecular drive: a cohesive mode of species evolution. Nature 299, 111-117.
    • (1982) Nature , vol.299 , pp. 111-117
    • Dover, G.A.1
  • 67
    • 0020554116 scopus 로고
    • Closely related species of Drosophila can contain different libraries of middle repetitive DNA sequences
    • DOWSETT, A. P. (1983). Closely related species of Drosophila can contain different libraries of middle repetitive DNA sequences. Chromosoma 88, 104-108.
    • (1983) Chromosoma , vol.88 , pp. 104-108
    • Dowsett, A.P.1
  • 68
    • 0031022584 scopus 로고    scopus 로고
    • Volatility of internal eliminated segments in germ line genes of hypotrichous ciliates
    • DUBOIS, M. L. & PRESCOTT, D. M. (1997). Volatility of internal eliminated segments in germ line genes of hypotrichous ciliates. Molecular and Cellular Biology 17, 326-337.
    • (1997) Molecular and Cellular Biology , vol.17 , pp. 326-337
    • Dubois, M.L.1    Prescott, D.M.2
  • 69
    • 0035500899 scopus 로고    scopus 로고
    • Recent duplication, domain accretion and the dynamic mutation of the human genome
    • EICHLER, E. E. (2001). Recent duplication, domain accretion and the dynamic mutation of the human genome. Trends in Genetics 17, 661-669.
    • (2001) Trends in Genetics , vol.17 , pp. 661-669
    • Eichler, E.E.1
  • 70
    • 0042027896 scopus 로고    scopus 로고
    • Structural dynamics of eukaryotic chromosome evolution
    • EICHLER, E. E. & SANKOFF, D. (2003). Structural dynamics of eukaryotic chromosome evolution. Science 301, 793-797.
    • (2003) Science , vol.301 , pp. 793-797
    • Eichler, E.E.1    Sankoff, D.2
  • 71
    • 0033374593 scopus 로고    scopus 로고
    • Characteristics of Chi distribution on different bacterial genomes
    • EL KAROUI, M., BIAUDET, V., SCHBATH, S. & GRUSS, A. (1999). Characteristics of Chi distribution on different bacterial genomes. Research in Microbiology 150, 579-587.
    • (1999) Research in Microbiology , vol.150 , pp. 579-587
    • El Karoui, M.1    Biaudet, V.2    Schbath, S.3    Gruss, A.4
  • 72
    • 0035976716 scopus 로고    scopus 로고
    • Transcription attenuation associated with bacterial repetitive extragenic BIME elements
    • ESPELI, O., MOULIN, L. & BOCCARD, F. (2001). Transcription attenuation associated with bacterial repetitive extragenic BIME elements. Journal of Molecular Biology 314, 375-386.
    • (2001) Journal of Molecular Biology , vol.314 , pp. 375-386
    • Espeli, O.1    Moulin, L.2    Boccard, F.3
  • 75
    • 0033972531 scopus 로고    scopus 로고
    • Genomic organisation and chromatin structure of Plasmodium falciparum chromosome ends
    • FIGUEIREDO, L. M., PIRRIT, L. A. & SCHERF, A. (2000). Genomic organisation and chromatin structure of Plasmodium falciparum chromosome ends. Molecular and Biochemical Parasitology 106, 169-174.
    • (2000) Molecular and Biochemical Parasitology , vol.106 , pp. 169-174
    • Figueiredo, L.M.1    Pirrit, L.A.2    Scherf, A.3
  • 76
    • 0037083982 scopus 로고    scopus 로고
    • A central role for Plasmodium falciparum subtelomeric regions in spatial positioning and telomere length regulation
    • FIGUEIREDO, L. M., FREITAS-JUNIOR, L. H., BOTTIUS, E., OLIVO-MARTIN, J.-C. & SCHERT, A. (2002). A central role for Plasmodium falciparum subtelomeric regions in spatial positioning and telomere length regulation. EMBO Journal 21, 815-824.
    • (2002) EMBO Journal , vol.21 , pp. 815-824
    • Figueiredo, L.M.1    Freitas-Junior, L.H.2    Bottius, E.3    Olivo-Martin, J.-C.4    Schert, A.5
  • 77
    • 0025083797 scopus 로고
    • Chromosomal evolution in Cervidac
    • FONTANA, F. & RUBINI, M. (1990). Chromosomal evolution in Cervidac. Biosystems 24, 157-174.
    • (1990) Biosystems , vol.24 , pp. 157-174
    • Fontana, F.1    Rubini, M.2
  • 78
    • 0037308917 scopus 로고    scopus 로고
    • The new RENT family of repetitive elements in Nicotiana species harbors gene regulatory elements related to the tCUP cryptic promoter
    • FOSTER, E., HATTORI, J., ZHANG, P., LABBE, H., MARTIN-HELLER, T., LI-POOK-THAN, J., OUELLET, T., MALLET, K. & MIKI, B. (2003). The new RENT family of repetitive elements in Nicotiana species harbors gene regulatory elements related to the tCUP cryptic promoter. Genome 46, 146-155.
    • (2003) Genome , vol.46 , pp. 146-155
    • Foster, E.1    Hattori, J.2    Zhang, P.3    Labbe, H.4    Martin-Heller, T.5    Li-Pook-Than, J.6    Ouellet, T.7    Mallet, K.8    Miki, B.9
  • 79
    • 0033522443 scopus 로고    scopus 로고
    • Cohabitation of insulators and silencing elements in yeast subtelomeric regions
    • FOUREL, G., REVARDEL, E., KOERING, C. E. & GILSON, E. (1999). Cohabitation of insulators and silencing elements in yeast subtelomeric regions. EMBO Journal 18, 2522-2537.
    • (1999) EMBO Journal , vol.18 , pp. 2522-2537
    • Fourel, G.1    Revardel, E.2    Koering, C.E.3    Gilson, E.4
  • 80
    • 0033828386 scopus 로고    scopus 로고
    • A family of cAMP-response-element-related DNA sequences with meiotic recombination hotspot activity in Schizosaccharomyces pombe
    • FOX, M. E., YAMADA, T., OHTA, K. & SMITH, G. R. (2000). A family of cAMP-response-element-related DNA sequences with meiotic recombination hotspot activity in Schizosaccharomyces pombe. Genetics 156, 59-68.
    • (2000) Genetics , vol.156 , pp. 59-68
    • Fox, M.E.1    Yamada, T.2    Ohta, K.3    Smith, G.R.4
  • 81
    • 0025231233 scopus 로고
    • Repetitive DNA sequences linked to the sea urchin spec genes contain transcriptional enhancer-like elements
    • GAN, L., ZHANG, W. & KLEIN, W. H. (1990). Repetitive DNA sequences linked to the sea urchin spec genes contain transcriptional enhancer-like elements. Developmental Biology 139, 180-196.
    • (1990) Developmental Biology , vol.139 , pp. 180-196
    • Gan, L.1    Zhang, W.2    Klein, W.H.3
  • 82
    • 0035997348 scopus 로고    scopus 로고
    • V(D)J recombination: RAG proteins, repair factors, and regulation
    • GELLERT, M. (2002). V(D)J recombination: RAG proteins, repair factors, and regulation. Annual Review of Biochemistry 71, 101-132.
    • (2002) Annual Review of Biochemistry , vol.71 , pp. 101-132
    • Gellert, M.1
  • 83
    • 0033638334 scopus 로고    scopus 로고
    • A chromatin insulator determines the nuclear localizations of DNA
    • GERASIMOVA, T. I., BVRD, K. & CORGES, V. G. (2000). A chromatin insulator determines the nuclear localizations of DNA. Molecular Cell 6, 1025-1035.
    • (2000) Molecular Cell , vol.6 , pp. 1025-1035
    • Gerasimova, T.I.1    Bvrd, K.2    Corges, V.G.3
  • 85
    • 0000661051 scopus 로고    scopus 로고
    • Organisation and function of transcription regulatory elements
    • (eds. F. C. Neidhardt et al.). ASM Press, Washington, D.C.
    • GRALLA, J. D. & COLLADO-VIDES, J. (1996). Organisation and function of transcription regulatory elements. In Escherichia coli and Salmonella Cellular and Molecular Biology, 2nd ed., (eds. F. C. Neidhardt et al.), pp. 1232-1245. ASM Press, Washington, D.C.
    • (1996) Escherichia coli and Salmonella Cellular and Molecular Biology, 2nd Ed. , pp. 1232-1245
    • Gralla, J.D.1    Collado-Vides, J.2
  • 86
    • 0034307716 scopus 로고    scopus 로고
    • It takes two transposons to tango: Transposable-element-mediated chromosomal rearrangements
    • GRAY, Y. H. (2000). It takes two transposons to tango: transposable-element-mediated chromosomal rearrangements. Trends in Genetics 16, 461-468.
    • (2000) Trends in Genetics , vol.16 , pp. 461-468
    • Gray, Y.H.1
  • 88
    • 0036532235 scopus 로고    scopus 로고
    • Heterochromatin: New possibilities for the inheritance of structure
    • GREWAL, S. I. & ELGIN, S. C. (2002). Heterochromatin: new possibilities for the inheritance of structure. Current Opinion in Genetics and Development 12, 178-187.
    • (2002) Current Opinion in Genetics and Development , vol.12 , pp. 178-187
    • Grewal, S.I.1    Elgin, S.C.2
  • 89
    • 0035989050 scopus 로고    scopus 로고
    • α-satellite DNA and vector composition influence rates of human artificial chromosome formation
    • GRIMES, B., RHOADES, A. & WILLARD, H. (2002). α-Satellite DNA and vector composition influence rates of human artificial chromosome formation. Molecular Therapy 5, 798-805.
    • (2002) Molecular Therapy , vol.5 , pp. 798-805
    • Grimes, B.1    Rhoades, A.2    Willard, H.3
  • 90
    • 0042836785 scopus 로고    scopus 로고
    • Non-random distribution of alu elements in genes of various functional categories: Insight from analysis of human chromosomes 21 and 22
    • GROVER, D., MAJUMDER, P. P., RAO, C. B., BRAHMACHARI, S. K. & MUKERJI, M. (2003). Non-random distribution of alu elements in genes of various functional categories: insight from analysis of human chromosomes 21 and 22. Molecular Biology and Evolution 20, 1420-1424.
    • (2003) Molecular Biology and Evolution , vol.20 , pp. 1420-1424
    • Grover, D.1    Majumder, P.P.2    Rao, C.B.3    Brahmachari, S.K.4    Mukerji, M.5
  • 92
    • 0033615491 scopus 로고    scopus 로고
    • A species of small antisense RNA in posttranscriptional gene silencing in plants
    • HAMILTON, A. J. & BAULCOMBE, D. C. (1999). A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 286, 950-952.
    • (1999) Science , vol.286 , pp. 950-952
    • Hamilton, A.J.1    Baulcombe, D.C.2
  • 93
    • 2442667886 scopus 로고    scopus 로고
    • Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes
    • HAN, J. S., SZAK, S. T. & BOEKE, J. D. (2004). Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes. Nature 429, 268-274
    • (2004) Nature , vol.429 , pp. 268-274
    • Han, J.S.1    Szak, S.T.2    Boeke, J.D.3
  • 94
    • 0029862490 scopus 로고    scopus 로고
    • Structure and dynamic organisation of centromeres/prekinetochores in the nucleus of mammalian cells
    • HE, D. & BRINKLEY, B. R. (1996). Structure and dynamic organisation of centromeres/prekinetochores in the nucleus of mammalian cells. Journal of Cell Science 109, 2693-2704.
    • (1996) Journal of Cell Science , vol.109 , pp. 2693-2704
    • He, D.1    Brinkley, B.R.2
  • 95
    • 0032881595 scopus 로고    scopus 로고
    • Molecular switches - The ON and OFF of bacterial phase variation
    • HENDERSON, I. R., OWEN, P. & NATARO, J. P. (1999). Molecular switches - the ON and OFF of bacterial phase variation. Molecular Microbiology 33, 919-932.
    • (1999) Molecular Microbiology , vol.33 , pp. 919-932
    • Henderson, I.R.1    Owen, P.2    Nataro, J.P.3
  • 96
    • 0030136596 scopus 로고    scopus 로고
    • Dosage-dependent modification of position-effect variegation in Drosophila
    • HENIKOFF, S. (1996). Dosage-dependent modification of position-effect variegation in Drosophila. Bioessays 18, 401-409.
    • (1996) Bioessays , vol.18 , pp. 401-409
    • Henikoff, S.1
  • 97
    • 0035839066 scopus 로고    scopus 로고
    • The centromere paradox: Stable inheritance with rapidly evolving DNA
    • HENIKOFF, S., AHMAD, K. & MALIK, H. S. (2001). The centromere paradox: stable inheritance with rapidly evolving DNA. Science 293, 1098-1102.
    • (2001) Science , vol.293 , pp. 1098-1102
    • Henikoff, S.1    Ahmad, K.2    Malik, H.S.3
  • 98
    • 0034953140 scopus 로고    scopus 로고
    • Site-specific recognition of a 70 base-pair element containing d(GA)n repeats mediates bithoraxoid polycomb group response element-dependent silencing
    • HODGSON, J. W., ARGIROPOULOS, B. & BROCK, H. W. (2001). Site-specific recognition of a 70 base-pair element containing d(GA)n repeats mediates bithoraxoid polycomb group response element-dependent silencing. Molecular and Cellular Biology 21, 4528-4543.
    • (2001) Molecular and Cellular Biology , vol.21 , pp. 4528-4543
    • Hodgson, J.W.1    Argiropoulos, B.2    Brock, H.W.3
  • 99
    • 19044367983 scopus 로고    scopus 로고
    • special November-December double issue on bacterial repeats
    • HOFNUNG, M. & SHAPIRO, J. (1999). Research in Microbiology 150 (special November-December double issue on bacterial repeats).
    • (1999) Research in Microbiology , vol.150
    • Hofnung, M.1    Shapiro, J.2
  • 101
    • 0030340346 scopus 로고    scopus 로고
    • Specific binding sites for a pol III transcriptional repressor and pol II transcription factor YY1 within the internucleosomal spacer region in primate Alu repetitive elements
    • HUMPHREY, G. W., ENGLANDER, E. W. & HOWARD, B. H. (1996). Specific binding sites for a pol III transcriptional repressor and pol II transcription factor YY1 within the internucleosomal spacer region in primate Alu repetitive elements. Gene Expression 6, 151-168.
    • (1996) Gene Expression , vol.6 , pp. 151-168
    • Humphrey, G.W.1    Englander, E.W.2    Howard, B.H.3
  • 102
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • INTERNATIONAL HUMAN GENOME CONSORTIUM (2001). Initial sequencing and analysis of the human genome. Nature 409, 860-921.
    • (2001) Nature , vol.409 , pp. 860-921
  • 103
    • 0033822364 scopus 로고    scopus 로고
    • Large-scale human promoter mapping using CpG islands
    • IOSHIKHES, I. P. & ZHANG, M. Q. (2000). Large-scale human promoter mapping using CpG islands. Nature Genetics 26, 61-63.
    • (2000) Nature Genetics , vol.26 , pp. 61-63
    • Ioshikhes, I.P.1    Zhang, M.Q.2
  • 104
    • 0036989929 scopus 로고    scopus 로고
    • Molecular characterization of the Pb recombination hotspot in the mouse major histocompatibility complex class II region
    • ISOBE, T., YASHINO, M., MIZUNO, K.-I., LINDAHL, K. F., KOIDE, T., GAUDIERI, S., GOJOBORI, T. & SHIROISHI, T. (2002). Molecular characterization of the Pb recombination hotspot in the mouse major histocompatibility complex class II region. Genomics 80, 229-235.
    • (2002) Genomics , vol.80 , pp. 229-235
    • Isobe, T.1    Yashino, M.2    Mizuno, K.-I.3    Lindahl, K.F.4    Koide, T.5    Gaudieri, S.6    Gojobori, T.7    Shiroishi, T.8
  • 106
    • 54249116230 scopus 로고
    • Genetic regulatory mechanisms in the synthesis of proteins
    • JACOB, F. & MONOD, J. (1961). Genetic regulatory mechanisms in the synthesis of proteins. Journal of Molecular Biology 3, 318-356.
    • (1961) Journal of Molecular Biology , vol.3 , pp. 318-356
    • Jacob, F.1    Monod, J.2
  • 108
    • 0037183881 scopus 로고    scopus 로고
    • An RNA-guided pathway for the epigenome
    • JENUWEIN, T. (2002). An RNA-guided pathway for the epigenome. Science 297, 2215-2218.
    • (2002) Science , vol.297 , pp. 2215-2218
    • Jenuwein, T.1
  • 109
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • JENUWEIN, T. & ALLIS, C. D. (2001). Translating the histone code. Science 293, 1074-1080.
    • (2001) Science , vol.293 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 110
    • 0026021682 scopus 로고
    • Phase variation of gonococcal pili by frameshift mutation in pilC, a novel gene for pilus assembly
    • JONSSON, A. B., NYBERG, G. & NORMARK, S. (1991). Phase variation of gonococcal pili by frameshift mutation in pilC, a novel gene for pilus assembly. EMBO Journal 10, 477-488.
    • (1991) EMBO Journal , vol.10 , pp. 477-488
    • Jonsson, A.B.1    Nyberg, G.2    Normark, S.3
  • 111
    • 0037301560 scopus 로고    scopus 로고
    • Origin of a substantial fraction of human regulatory sequences from transposable elements
    • JORDAN, I. K., ROGOZIN, I. B., GLAZKO, G. V. & KOONIN, E. V. (2003). Origin of a substantial fraction of human regulatory sequences from transposable elements. Trends in Genetics 19, 68-72.
    • (2003) Trends in Genetics , vol.19 , pp. 68-72
    • Jordan, I.K.1    Rogozin, I.B.2    Glazko, G.V.3    Koonin, E.V.4
  • 114
    • 0031081111 scopus 로고    scopus 로고
    • Simple sequence repeats as a source of quantitative variation
    • KASHI, Y., KING, D. & DOLLER, M. S. (1997). Simple sequence repeats as a source of quantitative variation. Trends in Genetics 13, 74-78.
    • (1997) Trends in Genetics , vol.13 , pp. 74-78
    • Kashi, Y.1    King, D.2    Doller, M.S.3
  • 116
    • 0035404678 scopus 로고    scopus 로고
    • Linking class-switch recombination with somatic hypermutation
    • KINOSHITA, K. & HONJO, T. (2001). Linking class-switch recombination with somatic hypermutation. Nature Reviews Molecular Cell Biology 2, 493-503.
    • (2001) Nature Reviews Molecular Cell Biology , vol.2 , pp. 493-503
    • Kinoshita, K.1    Honjo, T.2
  • 119
    • 0036500993 scopus 로고    scopus 로고
    • Systems biology: A brief overview
    • KITANO, H. (2002). Systems biology: a brief overview. Science 295, 1662-1664.
    • (2002) Science , vol.295 , pp. 1662-1664
    • Kitano, H.1
  • 120
    • 0027978876 scopus 로고
    • Delocalization of Vg1 mRNA from the vegetal cortex in Xenopus oocytes after destruction of Xlsirt RNA
    • KLOC, M. & ETKIN, L. D. (1994). Delocalization of Vg1 mRNA from the vegetal cortex in Xenopus oocytes after destruction of Xlsirt RNA. Science 265, 1101-1103.
    • (1994) Science , vol.265 , pp. 1101-1103
    • Kloc, M.1    Etkin, L.D.2
  • 121
    • 0033106406 scopus 로고    scopus 로고
    • A novel human DNA-binding protein with sequence similarity to a subfamily of redox proteins which is able to repress RNA-polymcrase-III-driven transcription of the Alu-family retroposons in vitro
    • KROPOTOV, A., SEDOVA, V., IVANOV, V., SAZEEVA, N., TIMILIN, A., KRUTILINA, R., OEI, S. L., GRIESENBECK, J., BUCHLOW, G. & TOMILIN, N. (1999). A novel human DNA-binding protein with sequence similarity to a subfamily of redox proteins which is able to repress RNA-polymcrase-III-driven transcription of the Alu-family retroposons in vitro. European Journal of Biochemistry 260, 336-346.
    • (1999) European Journal of Biochemistry , vol.260 , pp. 336-346
    • Kropotov, A.1    Sedova, V.2    Ivanov, V.3    Sazeeva, N.4    Timilin, A.5    Krutilina, R.6    Oei, S.L.7    Griesenbeck, J.8    Buchlow, G.9    Tomilin, N.10
  • 122
    • 0030631527 scopus 로고    scopus 로고
    • Nonhistone chromatin proteins HMG1 and HMG2 stabilise one of the sequence-specific complexes, formed on the promoter of human retroposons of the ALU-family, by other nuclear proteins
    • KROPOTOV, A. V., YAU, P., BRADBURY, P. & TOMILIN, N. (1997). Nonhistone chromatin proteins HMG1 and HMG2 stabilise one of the sequence-specific complexes, formed on the promoter of human retroposons of the ALU-family, by other nuclear proteins. Molekuliarnaia Genetika, Mikrobiologia, I Virusologia 4, 32-36.
    • (1997) Molekuliarnaia Genetika, Mikrobiologia, I Virusologia , vol.4 , pp. 32-36
    • Kropotov, A.V.1    Yau, P.2    Bradbury, P.3    Tomilin, N.4
  • 123
    • 0031774102 scopus 로고    scopus 로고
    • Directional gene silencing induced by a complex subtelomeric satellite in Drosophila
    • KURENOVA, E., CHAMPION, L., BIESSMANN, H. & MASON, J. M. (1998). Directional gene silencing induced by a complex subtelomeric satellite in Drosophila. Chromosoma 107, 311-320.
    • (1998) Chromosoma , vol.107 , pp. 311-320
    • Kurenova, E.1    Champion, L.2    Biessmann, H.3    Mason, J.M.4
  • 124
    • 0037131524 scopus 로고    scopus 로고
    • Setting the boundaries of chromatin domains and nuclear organization
    • LABRADOR, M. & CORCES, V. G. (2002). Setting the boundaries of chromatin domains and nuclear organization. Cell 111, 151-154.
    • (2002) Cell , vol.111 , pp. 151-154
    • Labrador, M.1    Corces, V.G.2
  • 125
    • 0026842288 scopus 로고
    • Scaffold-associated regions: Cis-acting determinants of chromatin structural loops and functional domains
    • LAEMMLI, U. K., KÄS, E., POLJAK, L. & ADACHI, Y. (1992). Scaffold-associated regions: cis-acting determinants of chromatin structural loops and functional domains. Current Opinion in Genetics and Development 2, 275-285.
    • (1992) Current Opinion in Genetics and Development , vol.2 , pp. 275-285
    • Laemmli, U.K.1    Käs, E.2    Poljak, L.3    Adachi, Y.4
  • 126
    • 0035014738 scopus 로고    scopus 로고
    • Protosilencers in Saccharomyces cerevisiae subtelomeric regions
    • LEBRUN, E., REVARDEL, E., BOSCHERON, C., LI, R., GILSON, E. & FOUREL, G. (2001). Protosilencers in Saccharomyces cerevisiae subtelomeric regions. Genetics 158, 167-176.
    • (2001) Genetics , vol.158 , pp. 167-176
    • Lebrun, E.1    Revardel, E.2    Boscheron, C.3    Li, R.4    Gilson, E.5    Fourel, G.6
  • 128
    • 0028410524 scopus 로고
    • Gross chromosome rearrangements mediated by transposable elements in Drosophila melanogaster
    • LIM, J. K. & SIMMONS, M. J. (1994). Gross chromosome rearrangements mediated by transposable elements in Drosophila melanogaster. Bioessays 16, 269-275.
    • (1994) Bioessays , vol.16 , pp. 269-275
    • Lim, J.K.1    Simmons, M.J.2
  • 129
    • 0035189042 scopus 로고    scopus 로고
    • Roles of DNA adenine methylation in regulating bacterial gene expression and virulence
    • LOW, D. A., WEYAND, N. J. & MAHAN, M. J. (2001). Roles of DNA adenine methylation in regulating bacterial gene expression and virulence. Infection and Immunity 69, 7197-7204.
    • (2001) Infection and Immunity , vol.69 , pp. 7197-7204
    • Low, D.A.1    Weyand, N.J.2    Mahan, M.J.3
  • 130
    • 0345306751 scopus 로고    scopus 로고
    • The origins of genome complexity
    • LYNCH, M. & CONERY, J. (2003). The origins of genome complexity. Science 302, 1401-1404.
    • (2003) Science , vol.302 , pp. 1401-1404
    • Lynch, M.1    Conery, J.2
  • 131
    • 0034612242 scopus 로고    scopus 로고
    • LINE-1 elements and X chromosome inactivation: A function for 'junk' DNA?
    • LYON, M. F. (2000). LINE-1 elements and X chromosome inactivation: a function for 'junk' DNA? Proceedings of the National Academy of Sciences, USA 97, 6248-6249.
    • (2000) Proceedings of the National Academy of Sciences, USA , vol.97 , pp. 6248-6249
    • Lyon, M.F.1
  • 132
    • 0034812517 scopus 로고    scopus 로고
    • Juxtaposition of an active promoter to vsp genes via site-specific DNA inversions generates antigenic variation in Mycoplasma bovis
    • LYSNYANSKY, Y. R., RON, Y. & YOGEV, D. (2001). Juxtaposition of an active promoter to vsp genes via site-specific DNA inversions generates antigenic variation in Mycoplasma bovis. Journal of Bacteriology 183, 5698-5708.
    • (2001) Journal of Bacteriology , vol.183 , pp. 5698-5708
    • Lysnyansky, Y.R.1    Ron, Y.2    Yogev, D.3
  • 134
    • 0037007221 scopus 로고    scopus 로고
    • GAGA can mediate enhancer function in trans by linking two separate DNA molecules
    • MAHMOUDI, T., KATSANI, K. R. & VERRIJZER, C. P. (2002). GAGA can mediate enhancer function in trans by linking two separate DNA molecules. EMBO Journal 21, 1775-1781.
    • (2002) EMBO Journal , vol.21 , pp. 1775-1781
    • Mahmoudi, T.1    Katsani, K.R.2    Verrijzer, C.P.3
  • 136
    • 0242298325 scopus 로고    scopus 로고
    • Maintenance of heterochromatin by RNA interference of tandem repeals
    • MARTIENSSEN, R. A. (2003). Maintenance of heterochromatin by RNA interference of tandem repeals. Nature Genetics 35, 213-214.
    • (2003) Nature Genetics , vol.35 , pp. 213-214
    • Martienssen, R.A.1
  • 137
    • 0035839105 scopus 로고    scopus 로고
    • RNA: Guiding gene silencing
    • MATZKE, M., MATZKE, A. J. & KOOTER, J. M. (2001). RNA: guiding gene silencing. Science 293, 1080-1083.
    • (2001) Science , vol.293 , pp. 1080-1083
    • Matzke, M.1    Matzke, A.J.2    Kooter, J.M.3
  • 138
    • 0032562596 scopus 로고    scopus 로고
    • A distinctive class of integron in the Vibrio cholerae genome
    • MAZEL, D., DYCHINCO, B., WEBB, V. A. & DAVIES, J. (1998). A distinctive class of integron in the Vibrio cholerae genome. Science 280, 605-608.
    • (1998) Science , vol.280 , pp. 605-608
    • Mazel, D.1    Dychinco, B.2    Webb, V.A.3    Davies, J.4
  • 139
    • 0035099397 scopus 로고    scopus 로고
    • On the roles of heterochromatin and cochromatin in meiosis in Drosophila: Mapping chromosomal pairing sites and testing candidate mutations for effects on X-Y nondisjunction and meiotic drive in male meiosis
    • MCKEE, B. D., HONG, C. S. & DAS, S. (2000). On the roles of heterochromatin and cochromatin in meiosis in Drosophila: mapping chromosomal pairing sites and testing candidate mutations for effects on X-Y nondisjunction and meiotic drive in male meiosis. Genetica 109, 77-93.
    • (2000) Genetica , vol.109 , pp. 77-93
    • McKee, B.D.1    Hong, C.S.2    Das, S.3
  • 140
    • 0034596989 scopus 로고    scopus 로고
    • Transcriptional silencing and promoter methylation triggered by double-stranded RNA
    • METTE, M. F., AUFSATZ, W., VAN DER WINDEN, J., MATZKE, M. A. & MATZKE, A. J. (2000). Transcriptional silencing and promoter methylation triggered by double-stranded RNA. EMBO Journal 19, 5194-5201.
    • (2000) EMBO Journal , vol.19 , pp. 5194-5201
    • Mette, M.F.1    Aufsatz, W.2    Van Der Winden, J.3    Matzke, M.A.4    Matzke, A.J.5
  • 141
    • 0034755894 scopus 로고    scopus 로고
    • Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome
    • MEYERS, B. C., TINGEY, S. V. & MORGANTE, M. (2001). Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome. Genome Research 11, 1660-1676.
    • (2001) Genome Research , vol.11 , pp. 1660-1676
    • Meyers, B.C.1    Tingey, S.V.2    Morgante, M.3
  • 142
    • 0031732044 scopus 로고    scopus 로고
    • Retrotransposon-related DNA sequences in the centromeres of grass chromosomes
    • MILLER, J. T., DONG, F., JACKSON, S. A., SONG, J. & JIANG, J. (1998). Retrotransposon-related DNA sequences in the centromeres of grass chromosomes. Genetics 150, 1615-1623.
    • (1998) Genetics , vol.150 , pp. 1615-1623
    • Miller, J.T.1    Dong, F.2    Jackson, S.A.3    Song, J.4    Jiang, J.5
  • 143
    • 0033736104 scopus 로고    scopus 로고
    • Evolutionary dynamics of the SGM transposon family in the Drosophila obscura species group
    • MILLER, W. J., NAGEL, A., BACHMANN, J. & BACHMANN, L. (2000). Evolutionary dynamics of the SGM transposon family in the Drosophila obscura species group. Molecular Biology and Evolution 17, 1597-1609.
    • (2000) Molecular Biology and Evolution , vol.17 , pp. 1597-1609
    • Miller, W.J.1    Nagel, A.2    Bachmann, J.3    Bachmann, L.4
  • 144
    • 0034159917 scopus 로고    scopus 로고
    • Evaluation and characterization of catabolite-responsive elements (cre) of Bacillus subtilis
    • MIWA, Y., NAKATA, A., OGIWARA, A., YAMAMOTO, M. & FUJITA, Y. (2000). Evaluation and characterization of catabolite-responsive elements (cre) of Bacillus subtilis. Nucleic Acids Research 28, 1206-1210.
    • (2000) Nucleic Acids Research , vol.28 , pp. 1206-1210
    • Miwa, Y.1    Nakata, A.2    Ogiwara, A.3    Yamamoto, M.4    Fujita, Y.5
  • 145
    • 0024596295 scopus 로고
    • Methyl-directed DNA mismatch correction
    • MODRICH, P. (1989). Methyl-directed DNA mismatch correction. Journal of Biological Chemistry 264, 6597-6600.
    • (1989) Journal of Biological Chemistry , vol.264 , pp. 6597-6600
    • Modrich, P.1
  • 146
  • 147
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • MOUSE GENOME SEQUENCING CONSORTIUM (2002). Initial sequencing and comparative analysis of the mouse genome. Nature 420, 520-562.
    • (2002) Nature , vol.420 , pp. 520-562
  • 148
    • 0028230861 scopus 로고
    • Ingrowth by photoreceptor axons induces transcription of a retrotransposon in the developing Drosophila brain
    • MOZER, B. A. & BENZER, S. (1994). Ingrowth by photoreceptor axons induces transcription of a retrotransposon in the developing Drosophila brain. Development 120, 1049-1058.
    • (1994) Development , vol.120 , pp. 1049-1058
    • Mozer, B.A.1    Benzer, S.2
  • 149
    • 0036009057 scopus 로고    scopus 로고
    • Analysis of hypermethylation in the RPS element suggests a signal function for short inverted repeats in de novo methylation
    • MÜLLER, A., MARINS, M., KAMISUGI, Y. & MEYER, P. (2002). Analysis of hypermethylation in the RPS element suggests a signal function for short inverted repeats in de novo methylation. Plant Molecular Biology 48, 383-399.
    • (2002) Plant Molecular Biology , vol.48 , pp. 383-399
    • Müller, A.1    Marins, M.2    Kamisugi, Y.3    Meyer, P.4
  • 150
    • 0029975889 scopus 로고    scopus 로고
    • Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator
    • MÜLLER, J., OEHLER, S. & MÜLLER-HILL, B. (1996). Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator. Journal of Molecular Biology 257, 21-29.
    • (1996) Journal of Molecular Biology , vol.257 , pp. 21-29
    • Müller, J.1    Oehler, S.2    Müller-Hill, B.3
  • 152
    • 0037355216 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres
    • NAGAKI, K., TALBERT, P. B., ZHONG, C. X., DAWE, R. K., HENIKOFF, S. & JIANG, J. (2003b). Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres. Genetics 163, 1221-1225.
    • (2003) Genetics , vol.163 , pp. 1221-1225
    • Nagaki, K.1    Talbert, P.B.2    Zhong, C.X.3    Dawe, R.K.4    Henikoff, S.5    Jiang, J.6
  • 153
    • 0035500898 scopus 로고    scopus 로고
    • Transposable elements are found in a large number of human protein coding regions
    • NEKRUTENKO, A. & LI, W.-H. (2001). Transposable elements are found in a large number of human protein coding regions. Trends in Genetics 17, 619-625.
    • (2001) Trends in Genetics , vol.17 , pp. 619-625
    • Nekrutenko, A.1    Li, W.-H.2
  • 154
    • 0036251775 scopus 로고    scopus 로고
    • Many human genes are transcribed from the antisense promoter of L1 retrotransposon
    • NIGUMANN, P., REDIK, K., MATLIK, K. & SPEEK, M. (2002). Many human genes are transcribed from the antisense promoter of L1 retrotransposon. Genomics 79, 628-634.
    • (2002) Genomics , vol.79 , pp. 628-634
    • Nigumann, P.1    Redik, K.2    Matlik, K.3    Speek, M.4
  • 158
    • 0018857680 scopus 로고
    • Selfish DNA: The ultimate parasite
    • ORGEL, L. E. & CRICK, F. H. (1980). Selfish DNA: the ultimate parasite. Nature 284, 604-607.
    • (1980) Nature , vol.284 , pp. 604-607
    • Orgel, L.E.1    Crick, F.H.2
  • 159
    • 0029907412 scopus 로고    scopus 로고
    • Repeated sequences from the Arabidopsis thaliana genome function as enhancers in transgenic tobacco
    • OTT, R. W. & HANSEN, L. K. (1996). Repeated sequences from the Arabidopsis thaliana genome function as enhancers in transgenic tobacco. Molecular and General Genetics 252, 563-571.
    • (1996) Molecular and General Genetics , vol.252 , pp. 563-571
    • Ott, R.W.1    Hansen, L.K.2
  • 160
    • 0026703046 scopus 로고
    • Variation across species in the size of the nuclear genome supports the junk-DNA explanation for the C-value paradox
    • PAGEL, M. & JOHNSTONE, R. A. (1992). Variation across species in the size of the nuclear genome supports the junk-DNA explanation for the C-value paradox. Proceedings of the Royal Society of London B: Biological Science 249(1325), 119-124.
    • (1992) Proceedings of the Royal Society of London B: Biological Science , vol.249 , Issue.1325 , pp. 119-124
    • Pagel, M.1    Johnstone, R.A.2
  • 161
    • 0942279615 scopus 로고    scopus 로고
    • Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery
    • PAL-BHADRA, M., LEIBOVITCH, B. A., GANDHI, S. G., RAO, M., BHADRA, U., BIRCHLER, J. A. & ELGIN, S. C. R. (2004). Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery. Science 303, 669-672.
    • (2004) Science , vol.303 , pp. 669-672
    • Pal-Bhadra, M.1    Leibovitch, B.A.2    Gandhi, S.G.3    Rao, M.4    Bhadra, U.5    Birchler, J.A.6    Elgin, S.C.R.7
  • 162
    • 0346786214 scopus 로고    scopus 로고
    • Retrotransposons provide an evolutionarily robust non-telomerase mechanism to maintain telomeres
    • PARDUE, M. L. & DEBARYSHE, P. G. (2003). Retrotransposons provide an evolutionarily robust non-telomerase mechanism to maintain telomeres. Annual Review of Genetics 37, 485-511.
    • (2003) Annual Review of Genetics , vol.37 , pp. 485-511
    • Pardue, M.L.1    DeBaryshe, P.G.2
  • 163
    • 0036043750 scopus 로고    scopus 로고
    • Distribution of LINEs and other repetitive elements in the karyotype of the bat Carollia: Implications for X-chromosome inactivation
    • PARISH, D. A., VISE, P., WICHMAN, H. A., BULL, J. J. & BAKER, R. J. (2002). Distribution of LINEs and other repetitive elements in the karyotype of the bat Carollia: implications for X-chromosome inactivation. Cytogenetics and Genome Research 96, 191-197.
    • (2002) Cytogenetics and Genome Research , vol.96 , pp. 191-197
    • Parish, D.A.1    Vise, P.2    Wichman, H.A.3    Bull, J.J.4    Baker, R.J.5
  • 165
    • 0030111477 scopus 로고    scopus 로고
    • DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences
    • PELISSIER, T., TUTOIS, S., TOURMENTE, S., DERAGON, J. M. & PICARD, G. (1996). DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences. Genetica 97, 141-151.
    • (1996) Genetica , vol.97 , pp. 141-151
    • Pelissier, T.1    Tutois, S.2    Tourmente, S.3    Deragon, J.M.4    Picard, G.5
  • 167
    • 0035058360 scopus 로고    scopus 로고
    • Evolution of genome size: New approaches to an old problem
    • PETROV, D. A. (2001). Evolution of genome size: new approaches to an old problem. Trends in Genetics 17, 23-28.
    • (2001) Trends in Genetics , vol.17 , pp. 23-28
    • Petrov, D.A.1
  • 169
    • 0035999991 scopus 로고    scopus 로고
    • CpGProD: Identifying CpG islands associated with transcription start sites in large genomic mammalian sequences
    • PONGER, L. & MOUCHIROUD, D. (2002). CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences. Bioinformatics 18, 631-633.
    • (2002) Bioinformatics , vol.18 , pp. 631-633
    • Ponger, L.1    Mouchiroud, D.2
  • 170
    • 0034574433 scopus 로고    scopus 로고
    • Genome gymnastics: Unique modes of DNA evolution and processing in ciliates
    • PRESCOTT, D. M. (2000). Genome gymnastics: unique modes of DNA evolution and processing in ciliates. Nature Reviews Genetics 1, 191-198.
    • (2000) Nature Reviews Genetics , vol.1 , pp. 191-198
    • Prescott, D.M.1
  • 172
    • 0033522444 scopus 로고    scopus 로고
    • Limitations on natural TPE in yeast
    • PRYDE, F. E. & LOUIS, E. J. (1999). Limitations on natural TPE in yeast. EMBO Journal 18, 2538-2550.
    • (1999) EMBO Journal , vol.18 , pp. 2538-2550
    • Pryde, F.E.1    Louis, E.J.2
  • 175
    • 0037072660 scopus 로고    scopus 로고
    • Small RNAs correspond to centromere heterochromatic repeats
    • REINHART, B. J. & BARTEL, D. P. (2002). Small RNAs correspond to centromere heterochromatic repeats. Science 297, 1831.
    • (2002) Science , vol.297 , pp. 1831
    • Reinhart, B.J.1    Bartel, D.P.2
  • 176
    • 0032913075 scopus 로고    scopus 로고
    • HmbR a hemoglobin-binding outer membrane protein of Neisseria meningitidis undergoes phase variation
    • RICHARDSON, A. R. & STOJILJKOVIC, I. (1999). HmbR a hemoglobin-binding outer membrane protein of Neisseria meningitidis undergoes phase variation. Journal of Bacteriology 18, 2067-2074.
    • (1999) Journal of Bacteriology , vol.18 , pp. 2067-2074
    • Richardson, A.R.1    Stojiljkovic, I.2
  • 177
    • 0037068372 scopus 로고    scopus 로고
    • DNA methylation and chromatin: Unraveling the tangled web
    • ROBERTSON, K. D. (2002). DNA methylation and chromatin: unraveling the tangled web. Oncogene 21, 5361-5379.
    • (2002) Oncogene , vol.21 , pp. 5361-5379
    • Robertson, K.D.1
  • 178
    • 0033215297 scopus 로고    scopus 로고
    • Identification and characterization of nuclear matrix-attachment regions in the human serpin gene cluster at 14q32.1
    • ROLLINI, P., NAMCIU, S. J., MARSDEN, M. D. & FOURNIER, R. E. K. (1999). Identification and characterization of nuclear matrix-attachment regions in the human serpin gene cluster at 14q32.1. Nucleic Acids Research 27, 3779-3791.
    • (1999) Nucleic Acids Research , vol.27 , pp. 3779-3791
    • Rollini, P.1    Namciu, S.J.2    Marsden, M.D.3    Fournier, R.E.K.4
  • 180
    • 0037194732 scopus 로고    scopus 로고
    • Chromosomal clustering of muscle expressed genes in Caenorhabditis elegans
    • ROY, P. J., STUARP, J. M., LUND, J. & KIM, S. K. (2002). Chromosomal clustering of muscle expressed genes in Caenorhabditis elegans. Nature 418, 975-979.
    • (2002) Nature , vol.418 , pp. 975-979
    • Roy, P.J.1    Stuarp, J.M.2    Lund, J.3    Kim, S.K.4
  • 181
    • 0037100664 scopus 로고    scopus 로고
    • Selective stimulation of translational expression by Alu RNA
    • RUBIN, C. M., KIMURA, R. H. & SCHMID, C. W. (2002). Selective stimulation of translational expression by Alu RNA. Nucleic Acids Research 30, 3253-3261.
    • (2002) Nucleic Acids Research , vol.30 , pp. 3253-3261
    • Rubin, C.M.1    Kimura, R.H.2    Schmid, C.W.3
  • 182
    • 0346612701 scopus 로고    scopus 로고
    • Regulation of eukaryotic DNA replication and nuclear structure
    • RUI, W. J. (1999). Regulation of eukaryotic DNA replication and nuclear structure. Cell Research 9, 163-170.
    • (1999) Cell Research , vol.9 , pp. 163-170
    • Rui, W.J.1
  • 183
    • 0037008211 scopus 로고    scopus 로고
    • Identification of a soybean protein that interacts with GAGA element dinucleotide repeat DNA
    • SANGWAN, I. & O'BRIAN, M. R. (2002). Identification of a soybean protein that interacts with GAGA element dinucleotide repeat DNA. Plant Physiology 129, 1788-1794.
    • (2002) Plant Physiology , vol.129 , pp. 1788-1794
    • Sangwan, I.1    O'Brian, M.R.2
  • 185
    • 0028284205 scopus 로고
    • Variable expression of the Ope outer membrane protein in Neisseria meningitidis is caused by size variation of a promoter containing poly-cytidine
    • SARKARI, J., PANDIT, N., MOXON, E. R. & ACHTMAN, M. (1994). Variable expression of the Ope outer membrane protein in Neisseria meningitidis is caused by size variation of a promoter containing poly-cytidine. Molecular Microbiology 13, 207-217.
    • (1994) Molecular Microbiology , vol.13 , pp. 207-217
    • Sarkari, J.1    Pandit, N.2    Moxon, E.R.3    Achtman, M.4
  • 187
    • 0037464584 scopus 로고    scopus 로고
    • DNA triplet repeats mediate heterochromatin-protein-1-sensitive variegated gene silencing
    • SAVELIEV, A., EVERETT, C., SHARPE, T., WEBSTER, Z. & FESTENSTEIN, R. (2003). DNA triplet repeats mediate heterochromatin-protein-1-sensitive variegated gene silencing. Nature 422, 909-913.
    • (2003) Nature , vol.422 , pp. 909-913
    • Saveliev, A.1    Everett, C.2    Sharpe, T.3    Webster, Z.4    Festenstein, R.5
  • 188
    • 0035015553 scopus 로고    scopus 로고
    • An analysis of the factory model for chromosome replication and segregation in bacteria
    • SAWITZKE, J. & AUSTIN, S. (2001). An analysis of the factory model for chromosome replication and segregation in bacteria. Molecular Microbiology 40, 786-794.
    • (2001) Molecular Microbiology , vol.40 , pp. 786-794
    • Sawitzke, J.1    Austin, S.2
  • 190
    • 0029685023 scopus 로고    scopus 로고
    • Alu: Structure, origin, evolution, significance, and function of one-tenth of human DNA
    • SCHMID, C. (1996). Alu: structure, origin, evolution, significance, and function of one-tenth of human DNA. Progress in Nucleic Acids Research and Molecular Biology 53, 283-319.
    • (1996) Progress in Nucleic Acids Research and Molecular Biology , vol.53 , pp. 283-319
    • Schmid, C.1
  • 192
    • 0037324675 scopus 로고    scopus 로고
    • Position-effect variegation and the genetic dissection of chromatin regulation in Drosophila
    • SCHOTTA, G., EBERT, A., DORN, R. & REUTER, G. (2003). Position-effect variegation and the genetic dissection of chromatin regulation in Drosophila. Seminars in Cell and Developmental Biology 14, 67-75.
    • (2003) Seminars in Cell and Developmental Biology , vol.14 , pp. 67-75
    • Schotta, G.1    Ebert, A.2    Dorn, R.3    Reuter, G.4
  • 193
    • 0035812788 scopus 로고    scopus 로고
    • Genomic and genetic definition of a functional human centromere
    • SCHUELER, M. G., HIGGINS, A. W., RUDD, M. K., GUSTASHAW, K. & WILLARD, H. F. (2001). Genomic and genetic definition of a functional human centromere. Science 294, 109-115.
    • (2001) Science , vol.294 , pp. 109-115
    • Schueler, M.G.1    Higgins, A.W.2    Rudd, M.K.3    Gustashaw, K.4    Willard, H.F.5
  • 194
    • 0025641736 scopus 로고
    • Premeiotic instability of repeated sequences in Neurospora crassa
    • SELKER, E. U. (1990). Premeiotic instability of repeated sequences in Neurospora crassa. Annual Review of Genetics 24, 579-613.
    • (1990) Annual Review of Genetics , vol.24 , pp. 579-613
    • Selker, E.U.1
  • 196
    • 0032774523 scopus 로고    scopus 로고
    • Genome system architecture and natural genetic engineering in evolution
    • SHAPIRO, J. A. (1999a). Genome system architecture and natural genetic engineering in evolution. Annals of the New York Academy of Science 870, 23-35.
    • (1999) Annals of the New York Academy of Science , vol.870 , pp. 23-35
    • Shapiro, J.A.1
  • 197
    • 0033288598 scopus 로고    scopus 로고
    • Transposable elements as the key to a 21st Century view of evolution
    • SHAPIRO, J. A. (1999b). Transposable elements as the key to a 21st Century view of evolution. Genetica 107, 171-179.
    • (1999) Genetica , vol.107 , pp. 171-179
    • Shapiro, J.A.1
  • 198
    • 0036962768 scopus 로고    scopus 로고
    • Genome organisation and reorganisation in evolution: Formatting for computation and function
    • From Epigenesis to Epigenetics: The Genome in Context (eds. L. Van Speybroeck, G. Van de Vijver and D. Dc Waele)
    • SHAPIRO, J. A. (2002a). Genome organisation and reorganisation in evolution: formatting for computation and function. In From Epigenesis to Epigenetics: The Genome in Context (eds. L. Van Speybroeck, G. Van de Vijver and D. Dc Waele). Annals of the New York Academy of Science 981, 111-134.
    • (2002) Annals of the New York Academy of Science , vol.981 , pp. 111-134
    • Shapiro, J.A.1
  • 199
    • 0036032439 scopus 로고    scopus 로고
    • Repetitive DNA, genome system architecture and genome reorganisation
    • SHAPIRO, J. A. (2002b). Repetitive DNA, genome system architecture and genome reorganisation. Research in Microbiology 150, 447-453.
    • (2002) Research in Microbiology , vol.150 , pp. 447-453
    • Shapiro, J.A.1
  • 200
    • 0037326172 scopus 로고    scopus 로고
    • Identification of a novel 'chromosome scaffold' protein that associates with Tec elements undergoing en masse elimination in Euplotes crassus
    • SHARP, S. I., PICKRELL, J. K. & JAHN, C. L, (2003). Identification of a novel 'chromosome scaffold' protein that associates with Tec elements undergoing en masse elimination in Euplotes crassus. Molecular Biology of the Cell 14, 571-584.
    • (2003) Molecular Biology of the Cell , vol.14 , pp. 571-584
    • Sharp, S.I.1    Pickrell, J.K.2    Jahn, C.L.3
  • 202
    • 0141615769 scopus 로고    scopus 로고
    • Conserved fragments of transposable elements in intergenic regions: Evidence for widespread recruitment of MIR-and L2-derived sequences within the mouse and human genomes
    • SILVA, J. C., SHABALINA, S. A., HARRIS, D. G., SPOUGE, J. L. & KONDRASHOVI, A. S. (2003). Conserved fragments of transposable elements in intergenic regions: evidence for widespread recruitment of MIR-and L2-derived sequences within the mouse and human genomes. Genetical Research 82, 1-18.
    • (2003) Genetical Research , vol.82 , pp. 1-18
    • Silva, J.C.1    Shabalina, S.A.2    Harris, D.G.3    Spouge, J.L.4    Kondrashovi, A.S.5
  • 204
    • 0347635470 scopus 로고    scopus 로고
    • Binding of mouse VL30 retrotransposon RNA to PSF protein induces genes repressed by PSF: Effects on steroidogenesis and oncogenesis
    • SONG, X., SUI, A. & GAREN, A. (2004). Binding of mouse VL30 retrotransposon RNA to PSF protein induces genes repressed by PSF: Effects on steroidogenesis and oncogenesis. Proceedings of the National Academy of Sciences, USA 101, 621-626.
    • (2004) Proceedings of the National Academy of Sciences, USA , vol.101 , pp. 621-626
    • Song, X.1    Sui, A.2    Garen, A.3
  • 205
    • 0034999474 scopus 로고    scopus 로고
    • Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes
    • SPEEK, M. (2001). Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes. Molecular and Cellular Biology 21, 1973-1985.
    • (2001) Molecular and Cellular Biology , vol.21 , pp. 1973-1985
    • Speek, M.1
  • 206
    • 0001849829 scopus 로고
    • Position-effect variegation in Drosophila
    • (eds. M. Ashburner and E. Novitski). Academic Press, New York
    • SPOFFORD, J. B. (1976). Position-effect variegation in Drosophila. In The Genetics and Biology of Drosophila (eds. M. Ashburner and E. Novitski), pp. 955-1018. Academic Press, New York.
    • (1976) The Genetics and Biology of Drosophila , pp. 955-1018
    • Spofford, J.B.1
  • 207
    • 0025736987 scopus 로고
    • Nucleolus organiser-suppressed position-effect variegation in Drosophila melanogaster
    • SPOFFORD, J. B. & DESALLE, R. (1991). Nucleolus organiser-suppressed position-effect variegation in Drosophila melanogaster. Genetical Research 57, 245-255.
    • (1991) Genetical Research , vol.57 , pp. 245-255
    • Spofford, J.B.1    Desalle, R.2
  • 209
    • 0023377194 scopus 로고
    • Common mechanism controlling phase and antigenic variation in pathogenic neisseriae
    • STERN, A. & MEYER, T. F. (1987). Common mechanism controlling phase and antigenic variation in pathogenic neisseriae. Molecular Microbiology 1, 5-12.
    • (1987) Molecular Microbiology , vol.1 , pp. 5-12
    • Stern, A.1    Meyer, T.F.2
  • 210
    • 0342905062 scopus 로고    scopus 로고
    • Members of the SRY family regulate the human LINE retrotransposons
    • TCHÉNIO, T., CASELLA, J.-F. & HEIDMANN, T. (2000). Members of the SRY family regulate the human LINE retrotransposons. Nucleic Acids Research 28, 411-415.
    • (2000) Nucleic Acids Research , vol.28 , pp. 411-415
    • Tchénio, T.1    Casella, J.-F.2    Heidmann, T.3
  • 212
    • 0037404124 scopus 로고    scopus 로고
    • Cloning of the human RHOB gene promoter: Characterization of a VNTR sequence that affects transcriptional activity
    • TOVAR, D., FAYE, J. C. & FAVRE, G. (2003). Cloning of the human RHOB gene promoter: characterization of a VNTR sequence that affects transcriptional activity. Genomics 81, 525-530.
    • (2003) Genomics , vol.81 , pp. 525-530
    • Tovar, D.1    Faye, J.C.2    Favre, G.3
  • 213
    • 0032775704 scopus 로고    scopus 로고
    • Elucidating sequence codes: Three codes for evolution
    • TRIFONOV, E. N. (1999). Elucidating sequence codes: three codes for evolution. Annals of the New York Academy of Science 870, 330-338.
    • (1999) Annals of the New York Academy of Science , vol.870 , pp. 330-338
    • Trifonov, E.N.1
  • 215
    • 0031282531 scopus 로고    scopus 로고
    • Chromatin containing CENP-A and alpha-satellite DNA is a major component of the inner kinetochore plate
    • VAFA, O. & SULLIVAN, K. F. (1997). Chromatin containing CENP-A and alpha-satellite DNA is a major component of the inner kinetochore plate. Current Biology 7, 897-900.
    • (1997) Current Biology , vol.7 , pp. 897-900
    • Vafa, O.1    Sullivan, K.F.2
  • 216
    • 0029041235 scopus 로고
    • Variable expression of class 1 outer membrane protein in Neisseria meningitidis is caused by variation in the spacing between the -10 and -35 regions of the promoter
    • VAN DER ENDE, A., HOPMAN, C. T., ZAAT, S., ESSINK, B. B., BERKHOUT, B. & DANKERT, J. (1995). Variable expression of class 1 outer membrane protein in Neisseria meningitidis is caused by variation in the spacing between the -10 and -35 regions of the promoter. Journal of Bacteriology 177, 2475-2480.
    • (1995) Journal of Bacteriology , vol.177 , pp. 2475-2480
    • Van Der Ende, A.1    Hopman, C.T.2    Zaat, S.3    Essink, B.B.4    Berkhout, B.5    Dankert, J.6
  • 217
    • 0242287927 scopus 로고    scopus 로고
    • The eukaryotic genome: A system regulated at different hierarchical levels
    • VAN DRIEL, R., FRANSZ, P. F. & VERSCHURE, P. J. (2003). The eukaryotic genome: a system regulated at different hierarchical levels. Journal of Cell Science 116, 4067-4075.
    • (2003) Journal of Cell Science , vol.116 , pp. 4067-4075
    • Van Driel, R.1    Fransz, P.F.2    Verschure, P.J.3
  • 218
    • 0029153564 scopus 로고
    • The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element
    • VANSANT, G. & REYNOLDS, W. F. (1995). The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element. Proceedings of the National Academy of Sciences, USA 92, 8229-8233.
    • (1995) Proceedings of the National Academy of Sciences, USA , vol.92 , pp. 8229-8233
    • Vansant, G.1    Reynolds, W.F.2
  • 221
    • 0242384184 scopus 로고    scopus 로고
    • B1 and related SINEs in mammalian genomes
    • VASSETZKY, N. S., TEN, O. A. & KRAMEROV, D. A. (2003). B1 and related SINEs in mammalian genomes. Gene 319, 149-160.
    • (2003) Gene , vol.319 , pp. 149-160
    • Vassetzky, N.S.1    Ten, O.A.2    Kramerov, D.A.3
  • 223
    • 0141854009 scopus 로고    scopus 로고
    • The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes
    • VERSTEEG, R., VAN SCHAIK, B. D., VAN BATENBURG, M. F., ROOS, M., MONAJEMI, R., CARON, H., BUSSEMAKER, H. J. & VAN KAMPEN, A. H. (2003). The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes. Genome Research 13, 1998-2004.
    • (2003) Genome Research , vol.13 , pp. 1998-2004
    • Versteeg, R.1    Van Schaik, B.D.2    Van Batenburg, M.F.3    Roos, M.4    Monajemi, R.5    Caron, H.6    Bussemaker, H.J.7    Van Kampen, A.H.8
  • 224
    • 0242380288 scopus 로고    scopus 로고
    • Selfish DNA is maladaptive: Evidence from the plant Red List
    • VINOGRADOV, A. E. (2003). Selfish DNA is maladaptive: evidence from the plant Red List. Trends in Genetics 19, 609-614.
    • (2003) Trends in Genetics , vol.19 , pp. 609-614
    • Vinogradov, A.E.1
  • 225
    • 0037072661 scopus 로고    scopus 로고
    • Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi
    • VOLPE, T. A., KIDNER, C., HALL, I. M., TENG, G., GREWAL, S. I. & MARTIENSSEN, R. A. (2002). Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 297, 1833-1837.
    • (2002) Science , vol.297 , pp. 1833-1837
    • Volpe, T.A.1    Kidner, C.2    Hall, I.M.3    Teng, G.4    Grewal, S.I.5    Martienssen, R.A.6
  • 227
    • 0008146244 scopus 로고    scopus 로고
    • 3′-End processing of pre-mRNA in eukaryotes
    • WAHLE, E. & RUEGSEGGER, U. (1999). 3′-End processing of pre-mRNA in eukaryotes. FEMS Microbiology Reviews 23, 277-295.
    • (1999) FEMS Microbiology Reviews , vol.23 , pp. 277-295
    • Wahle, E.1    Ruegsegger, U.2
  • 228
    • 0032076461 scopus 로고    scopus 로고
    • Beyond the nucleosome: Epigenetic aspects of position-effect variegation in Drosophila
    • WAKIMOTO, B. T. (1998). Beyond the nucleosome: epigenetic aspects of position-effect variegation in Drosophila. Cell 93, 321-324.
    • (1998) Cell , vol.93 , pp. 321-324
    • Wakimoto, B.T.1
  • 229
    • 0035872920 scopus 로고
    • Analysis of a VMP-like sequence (vis) locus in Borrelia garinii and Vls homologues among four Borrelia burgdorferi sensu lalo species
    • WANG, G., VAN DAM, A. P. & DANKERT, J. (1995). Analysis of a VMP-like sequence (vis) locus in Borrelia garinii and Vls homologues among four Borrelia burgdorferi sensu lalo species. FEMS Microbiological Letters 199, 39-45.
    • (1995) FEMS Microbiological Letters , vol.199 , pp. 39-45
    • Wang, G.1    Van Dam, A.P.2    Dankert, J.3
  • 230
    • 0023413830 scopus 로고
    • Primate brain-specific cytoplasmic transcript of the Alu repeat family
    • WATSON, J. B. & SUTCLIFFE, J. G. (1987). Primate brain-specific cytoplasmic transcript of the Alu repeat family. Molecular and Cellular Biology 7, 3324-3327.
    • (1987) Molecular and Cellular Biology , vol.7 , pp. 3324-3327
    • Watson, J.B.1    Sutcliffe, J.G.2
  • 231
    • 0022555861 scopus 로고
    • Nonviral retroposons: Genes, pseudogenes and transposable elements generated by the reverse flow of genetic information
    • WEINER, A. M., DEININGER, P. L. & EFSTRATIADIS, A. (1986). Nonviral retroposons: Genes, pseudogenes and transposable elements generated by the reverse flow of genetic information. Annual Review of Biochemistry 55, 631-661.
    • (1986) Annual Review of Biochemistry , vol.55 , pp. 631-661
    • Weiner, A.M.1    Deininger, P.L.2    Efstratiadis, A.3
  • 233
    • 0035892245 scopus 로고    scopus 로고
    • Temporal control of DNA replication and the adaptive value of chromatin diminution in copepods
    • WYNGAARD, G. A. & GREGORY, T. R. (2001). Temporal control of DNA replication and the adaptive value of chromatin diminution in copepods. Journal of Experimental Zoology 291, 310-316.
    • (2001) Journal of Experimental Zoology , vol.291 , pp. 310-316
    • Wyngaard, G.A.1    Gregory, T.R.2
  • 234
    • 0035861492 scopus 로고    scopus 로고
    • Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: High-resolution mapping of replication origins
    • WYRICK, J. J., APARICIO, J. G., CHEN, T., BARNETT, J. D., JENNINGS, E. G., YOUNG, R. A., BELL, S. P. & APARICIO, O. M. (2001). Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins. Science 14, 2357-2360.
    • (2001) Science , vol.14 , pp. 2357-2360
    • Wyrick, J.J.1    Aparicio, J.G.2    Chen, T.3    Barnett, J.D.4    Jennings, E.G.5    Young, R.A.6    Bell, S.P.7    Aparicio, O.M.8
  • 236
    • 0033579468 scopus 로고    scopus 로고
    • Tandem B1 elements located in a mouse methylation center provide a target for de novo DNA methylation
    • YATES, P. A., BURMAN, R. W., MUMMANENI, P., KRUSSEL, S. & TURKER, M. S. (1999). Tandem B1 elements located in a mouse methylation center provide a target for de novo DNA methylation. Journal of Biological Chemistry 274, 36357-36361.
    • (1999) Journal of Biological Chemistry , vol.274 , pp. 36357-36361
    • Yates, P.A.1    Burman, R.W.2    Mummaneni, P.3    Krussel, S.4    Turker, M.S.5
  • 239
    • 0032549745 scopus 로고    scopus 로고
    • Genomic cis-regulatory logic: Experimental and computational analysis of a sea urchin gene
    • YUH, C. H., BOLOURI, H. & DAVIDSON, E. H. (1998). Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene. Science 279, 1896-1902.
    • (1998) Science , vol.279 , pp. 1896-1902
    • Yuh, C.H.1    Bolouri, H.2    Davidson, E.H.3
  • 240
    • 0033574638 scopus 로고    scopus 로고
    • A second gene encoding the mouse proteosome activator b subunit is part of a LINE1 element and is driven by a LINE1 promoter
    • ZAISS, D. M. W. & KLOETZEL, P.-M. (1999). A second gene encoding the mouse proteosome activator b subunit is part of a LINE1 element and is driven by a LINE1 promoter. Journal of Molecular Biology 287, 829-835.
    • (1999) Journal of Molecular Biology , vol.287 , pp. 829-835
    • Zaiss, D.M.W.1    Kloetzel, P.-M.2
  • 243
    • 0034696570 scopus 로고    scopus 로고
    • A novel Pax-6 binding site in rodent B1 repetitive elements: Coevolution between developmental regulation and repeated elements?
    • ZHOU, Y.-H., ZHENG, J. B., GU, X., LI, W.-H. & SAUNDERS, G. F. (2000). A novel Pax-6 binding site in rodent B1 repetitive elements: coevolution between developmental regulation and repeated elements? Gene, 245, 319-328.
    • (2000) Gene , vol.245 , pp. 319-328
    • Zhou, Y.-H.1    Zheng, J.B.2    Gu, X.3    Li, W.-H.4    Saunders, G.F.5
  • 244
    • 0036852096 scopus 로고    scopus 로고
    • Novel Pax6 binding sites in the human genome and the role of repetitive elements in the evolution of gene regulation
    • ZHOU, Y.-H., ZHENG, J. B., GU, X., SAUNDERS, G. F. & YUNG, W.-K. A. (2002). Novel Pax6 binding sites in the human genome and the role of repetitive elements in the evolution of gene regulation. Genome Research 12, 1716-1722.
    • (2002) Genome Research , vol.12 , pp. 1716-1722
    • Zhou, Y.-H.1    Zheng, J.B.2    Gu, X.3    Saunders, G.F.4    Yung, W.-K.A.5
  • 245
    • 0038609020 scopus 로고    scopus 로고
    • Examination of sequence homology between human chromosome 20 and the mouse genome: Intense conservation of many genomic elements
    • ZHU, L., SWERGOLD, G. D. & SELDIN, M. F. (2003). Examination of sequence homology between human chromosome 20 and the mouse genome: intense conservation of many genomic elements. Human Genetics 113, 60-70.
    • (2003) Human Genetics , vol.113 , pp. 60-70
    • Zhu, L.1    Swergold, G.D.2    Seldin, M.F.3
  • 246
    • 0036021705 scopus 로고    scopus 로고
    • Why so many noncoding nucleotides? The eukaryote genome as an epigenetic machine
    • ZUCKERKANDL, E. (2002). Why so many noncoding nucleotides? The eukaryote genome as an epigenetic machine. Genetica 115, 105-129.
    • (2002) Genetica , vol.115 , pp. 105-129
    • Zuckerkandl, E.1


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