The dog genome: Survey sequencing and comparative analysis

Science

Volumn 301, Issue 5641, 2003, Pages 1898-1903

  Kirkness, Ewen F ^a   Bafna, Vineet ^b   Halpern, Aaron L ^b   Levy, Samuel ^b   Remington, Karin ^b   Rusch, Douglas B ^b   Delcher, Arthur L ^a   Pop, Mihai ^a   Wang, Wei ^a   Fraser, Claire M ^a   Venter, J Craig ^b  

^a J CRAIG VENTER INSTITUTE   (United States)

^b Ctr for the Advancement of Genomics   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DISEASES; GENETIC ENGINEERING; MAPPING;

DOG GENOMES;

GENES;

CANID; GENOME;

ARTICLE; COMPARATIVE GENE MAPPING; DOG; GENE SEQUENCE; GENETIC POLYMORPHISM; GENETIC TRAIT; GENOME; HUMAN; HUMAN GENOME; MOUSE; MUTATION RATE; NONHUMAN; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; SYNTENY;

ANIMALS; CHROMOSOMES, MAMMALIAN; COMPUTATIONAL BIOLOGY; CONSERVED SEQUENCE; CONTIG MAPPING; DNA, INTERGENIC; DOGS; GENOME; GENOME, HUMAN; GENOMICS; HUMANS; LONG INTERSPERSED NUCLEOTIDE ELEMENTS; MALE; MICE; MOLECULAR SEQUENCE DATA; MUTATION; PHYLOGENY; PHYSICAL CHROMOSOME MAPPING; POLYMORPHISM, SINGLE NUCLEOTIDE; REPETITIVE SEQUENCES, NUCLEIC ACID; RNA, MESSENGER; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SHORT INTERSPERSED NUCLEOTIDE ELEMENTS; SYNTENY; VARIATION (GENETICS);

CANIDAE; CANIS FAMILIARIS; MAMMALIA;

EID: 0141596080     PISSN: 00368075     EISSN: None     Source Type: Journal    
DOI: 10.1126/science.1086432     Document Type: Article

References (30)

1. S. J. O'Brien et al., Science 286, 458 (1999).
2. S. J. O'Brien et al., Science 286, 479 (1999).
3. E. A. Ostrander, F. Galibert, D. F. Patterson, Trends Genet. 16, 117 (2000).
4. D. F. Patterson, J. Vet. Intern. Med. 14, 1 (2000).
5. D. F. Patterson, Canine Genetic Disease Information Systems: A Computerized Knowledge Base of Genetics Diseases in Dogs (Mosby Yearbook, St. Louis, MO, 2001).
6. K. Chase et al., Proc. Natl. Acad. Sci. U.S.A. 99, 9930 (2002).
7. R. H. Waterston et al., Nature 420, 520 (2002).
8. J. C. Venter et al., Science 291, 1304 (2001).
9. A. E. Vinogradov, Cytometry 31, 100 (1998).
10. E. S. Lander, M. S. Waterman, Genomics 2, 231 (1988).
11. E. W. Myers et al., Science 287, 2196 (2000).
12. A. F. Smit, G. Toth, A. D. Riggs, J. Jurka, J. Mol. Biol. 246, 401 (1995).
13. O. Madsen et al., Nature 409, 610 (2001).
14. W. J. Murphy et al., Nature 409, 614 (2001).
15. M. F. Minnick, L. C. Stillwell, J. M. Heineman, G. L. Stiegler, Gene 110, 235 (1992).
16. N. S. Vassetzky, D. A. Kramerov, Mamm. Genome 13, 50 (2002).
17. R. J. Mural et al., Science 296, 1661 (2002).
18. P. A. Davies, W. Wang, T. G. Hales, E. F. Kirkness, J. Biol. Chem. 278, 712 (2003).
19. J. K. Lowe et al., Genomics 82, 86 (2003).
20. X. Zhang, S. Firestein, Nature Neurosci. 5, 124 (2002).
21. I. Rodriguez et al., Nature Neurosci. 5, 134 (2002).
22. R. L. Tatusov et al., Nucleic Acids Res. 29, 22 (2001).
23. I. Dubchak et al., Genome Res. 10, 1304 (2000).
24. M. Breen et al., Genome Res. 11, 1784 (2001).
25. R. Guyon et al., Proc. Natl. Acad. Sci. U.S.A. 100, 5296 (2003).
26. J. A. Broulliette, J. R. Andrew, P. J. Venta, Mamm. Genome 11, 1079 (2000).
27. R. Sachidanandam et al., Nature 409, 928 (2001).
28. M. A. Batzer, P. L. Deininger, Nature Rev. Genet. 3, 370 (2002).
29. L. Lin et al., Cell 98, 365 (1999).
30. We thank E. Ostrander, E. Mignot, R. Wayne, and J. Pollinger for providing samples of DNA from dog and other canids. We are grateful to E. Ostrander and F. Galibert for providing the sequences of RH-mapped markers. We thank C. Fosler and H. Koo for help with sequence submissions to GenBank. This work was supported by the J. Craig Venter Science Foundation.