Evolutionary dynamics of the SGM transposon family in the Drosophila obscura species group

Molecular Biology and Evolution

Volumn 17, Issue 11, 2000, Pages 1597-1609

  Miller, W J ^a   Nagel, A ^a   Bachmann, J ^a   Bachmann, L ^a  

^a UNIVERSITY OF VIENNA   (Austria)

Author keywords

Drosophila genomics; Genome evolution; Interspersed repeats; Mobile elements; Repetitive DNA; Satellite DNA; Transposons

Indexed keywords

REPETITIVE DNA; SATELLITE DNA;

ARTICLE; DROSOPHILA; GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROMOTER REGION; SPECIES DIFFERENCE; TRANSPOSON;

ACARI; DROSOPHILA AMBIGUA; DROSOPHILA GUANCHE; DROSOPHILA MADEIRENSIS; DROSOPHILA MELANOGASTER; DROSOPHILA MIRANDA; DROSOPHILA OBSCURA; DROSOPHILA SUBOBSCURA; MELANOGASTER; OBSCURA GROUP; SOPHOPHORA;

EID: 0033736104     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a026259     Document Type: Article

References (79)

1. Transposition mediated by RAG1 and RAG2 and its implications for the evolution of the immune system
2. Centromeres from telomeres? The centromeric region of the Y chromosome of Drosophila melanogaster contains a tandem array of telomeric HeT- A- and TART-related sequences
3. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
4. Evolutionary changes of the structure of mobile genetic elements in Drosophila
5. Satellite DNA and speciation: A species specific satellite DNA of Drosophila guanche
6. Evolution of a telomere associated satellite DNA sequence in the genome of Drosophila tristis and related species
7. Characterization of a species-specific satellite DNA family of Dolichopoda schiavazzii (Orthoptera, Rhaphidophoridae) cave crickets
8. Tandemly repeated satellite DNA of Dolichopoda schiavazzii: A test for models on the evolution of highly repetitive DNA
9. Positional cloning of the mouse retrovirus restriction gene Fv1
10. Cosuppression comes to the animals
11. Transcription of a satellite DNA on two Y chromosome loops of Drosophila melanogaster
12. Mobile inverted-repeat elements of the Tourist family are associated with the genes of many cereal grasses
13. Transposable elements map in a conserved pattern of distribution extending from beta-heterochromatin to centromeres in Drosophila melanogaster
14. Something from nothing: The evolution and utility of satellite repeats
15. High genetic instability of heterochromatin after transposition of the LINE-like I factor in Drosophila melanogaster
16. Revising the selfish DNA hypothesis: New evidence on accumulation of transposable elements in heterochromatin
17. Expansions of transgene repeats cause heterochromatin formation and gene silencing in Drosophila
18. Transgene repeat arrays interact with distal heterochromatin and cause silencing in cis and trans
19. Conservation and divergence in multigene families: Alternatives to selection and drift
20. Transposition of mobile genetic elements in interspecific hybrids of Drosophila
21. Cytological localization and organization of dispersed middle repetitive DNA sequences of Drosophila subobscura
22. Long terminal repeat retrotransposons jump between species
23. An isolate of human immunodeficiency virus type 1 originally classified as subtype I represents a complex mosaic comprising three different group M subtypes (A, G, and I)
24. Mitochondrial DNA evolution in the obscura species subgroup of Drosophila
25. A species specific satellite DNA family of Drosophila subsilvestris appearing predominantly in B chromosomes
26. Nested insertions of short mobile sequences in Drosophila P elements
27. The pvB370 satellite DNA family of the Drosophila virilis group and its evolutionary relation to mobile dispersed genetic pDv elements
28. DNA transposition by the RAG1 and RAG2 proteins: A possible source of oncogenic translocations
29. Short inverted-repeat transposable elements in teleost fish and implications for a mechanism of their amplification
30. Taming of transposable elements by homolog-dependent gene silencing
31. A conserved repetitive DNA element located in the centromeres of cereal chromosomes
32. The biology of heterochromatin
33. Evidence for the role of recombination in the regulatory evolution of Saccharomyces cerevisiae Ty elements
34. The role of interelement selection in Saccharomyces cerevisiae Ty element evolution
35. Repeats in genomic DNA: Mining and meaning
36. L1 repeat is a basic unit of heterochromatin satellites in Cetaceans
37. Centromeres, CENP-B and Tigger too
38. Virtually full-length subtype F and F/D recombinant HIV-1 from Africa and South America
39. Synonymous rates at the RpII215 gene of Drosophila. Variation among species and across the coding region
40. Transposable elements, gene silencing and macroevolution
41. LTR transposons and the evolution of eukaryotic enhancers
42. Evidence for retrotranscription of protein-coding genes in the Drosophila subobscura genome
43. Characterization and evolution of the Adh genomic region in Drosophila guanche and Drosophila madeirensis
44. Homology-dependent gene silencing in transgenic plants: What does it really tell us?
45. Evolution of satellite DNAs from the genus Palorus - Experimental evidence for the 'library' hypothesis
46. P homologous sequences are tandemly repeated in the genome of Drosophila guanche
47. Molecular Domestication of mobile elements
48. Molecular domestication - More than a sporadic episode in evolution
49. Structure and expression of the clustered P element homologues in Drosophila subobscura and D. guanche
50. P element domestication: A stationary P element may encode a 66kDa repressor-like protein in the Drosophila montium species subgroup
51. A P element has induced intron formation in Drosophila
52. Structure, molecular evolution and maintenance of copy number of extended repeated structures in the X-heterochromatin of Drosophila melanogaster
53. Co-suppression in Drosophila: Gene silencing of Alcohol dehydrogenase by white-Adh transcends is Polycomb dependent
54. Cosuppression of nonhomologous transcends in Drosophila involves mutually related endogenous sequences
55. Telomeres and telomerase: More than the end of the line
56. Structure and origin of the P element related gene cluster of Drosophila madeirensis
57. DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences
58. Gypsy transposition correlates with the production of a retroviral envelope-like protein under the tissue-specific control of the Drosophila flamenco gene
59. Transposable elements are stable structural components of Drosophila melanogaster heterochromatin
60. Flamenco, a gene controlling the gypsy retrovirus of Drosophila melanogaster
61. Molecular phylogeny and divergence times of drosophilid species
62. The neighbor-joining method: A new method for reconstructing phylogenetic trees
63. Investigation of the organization of mammalian chromosomes at the DNA sequence level
64. DNA sequencing with chain-terminating inhibitors
65. Epigenetic phenomena in filamentous fungi: Useful paradigm or repeat-induced confusion
66. Tiggers and DNA transposon fossils in the human genome
67. Identification and characterization of 14 transposon-like elements in the noncoding regions of members of the Xa21 family of disease resistance genes in rice
68. Long range periodicities in mouse satellite DNA
69. A duplication including the Y allele of Lcp2 and the TRIM retrotransposon at the Lcp locus on the degenerating neo-Y chromosome of Drosophila miranda: Molecular structure and mechanism by which it may have arisen
70. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4
71. Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
72. A transposable element can drive the concerted evolution of tandemly repetitious DNA
73. The pogo transposable element family of Drosophila melanogaster
74. GEM, a cluster of repetitive sequences in the Drosophila subobscura genome
75. Transposable elements and the evolution of gene expression
76. Epigenetics: Regulation through repression
77. Cytosine methylation and the ecology of intragenomic parasites
78. Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heart-breaker into genic regions of maize
79. Dispersed repeats in Drosophila virilis: Elements mobilized by interspecific hybridization