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Volumn 20, Issue 9, 2003, Pages 1420-1424

Nonrandom distribution of Alu elements in genes of various functional categories: Insight from analysis of human chromosomes 21 and 22

Author keywords

Alu; Chromosomes 21 and 22; Functional classification; Gene regulation; Repeat distribution; Retrotransposons

Indexed keywords

STRUCTURAL PROTEIN;

EID: 0042836785     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msg153     Document Type: Article
Times cited : (76)

References (33)
  • 4
    • 0032715524 scopus 로고    scopus 로고
    • Association of some potential hormone response elements in human genes with the Alu family repeats
    • Babich, V., N. Aksenov, V. Alexeenko, S. L. Oei, G. Buchlow, and N. Tomilin. 1999. Association of some potential hormone response elements in human genes with the Alu family repeats. Gene 239:341-349.
    • (1999) Gene , vol.239 , pp. 341-349
    • Babich, V.1    Aksenov, N.2    Alexeenko, V.3    Oei, S.L.4    Buchlow, G.5    Tomilin, N.6
  • 6
    • 0037022569 scopus 로고    scopus 로고
    • Genes, pseudogenes, and Alu sequence organization across human chromosomes 21 and 22
    • Chen, C., A. J. Gentles, J. Jurka, and S. Karlin. 2002. Genes, pseudogenes, and Alu sequence organization across human chromosomes 21 and 22. Proc. Natl. Acad. Sci. USA 99:2930-2935.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 2930-2935
    • Chen, C.1    Gentles, A.J.2    Jurka, J.3    Karlin, S.4
  • 7
    • 0022429759 scopus 로고
    • Integration site preferences of the Alu family and similar repetitive DNA sequences
    • Daniels, G. R., and P. L. Deininger. 1985. Integration site preferences of the Alu family and similar repetitive DNA sequences. Nucleic Acids Res. 13:8939-8954.
    • (1985) Nucleic Acids Res. , vol.13 , pp. 8939-8954
    • Daniels, G.R.1    Deininger, P.L.2
  • 9
    • 79960655760 scopus 로고    scopus 로고
    • The DNA sequence of human chromosome 22
    • Dunham, I., N. Shimizu, B. A. Roe et al. (25 co-authors). 1999. The DNA sequence of human chromosome 22. Nature 402:489-495.
    • (1999) Nature , vol.402 , pp. 489-495
    • Dunham, I.1    Shimizu, N.2    Roe, B.A.3
  • 10
    • 0028951144 scopus 로고
    • Nucleosome positioning by human Alu elements in chromatin
    • Englander, E. W., and B. H. Howard. 1995. Nucleosome positioning by human Alu elements in chromatin. J. Biol. Chem. 270:10091-10096.
    • (1995) J. Biol. Chem. , vol.270 , pp. 10091-10096
    • Englander, E.W.1    Howard, B.H.2
  • 11
    • 0027304429 scopus 로고
    • Nucleosome interactions with a human Alu element. Transcriptional repression and effects of template methylation
    • Englander, E. W., A. P. Wolffe, and B. H. Howard. 1993. Nucleosome interactions with a human Alu element. Transcriptional repression and effects of template methylation. J. Biol. Chem. 268:19565-19573.
    • (1993) J. Biol. Chem. , vol.268 , pp. 19565-19573
    • Englander, E.W.1    Wolffe, A.P.2    Howard, B.H.3
  • 13
    • 0037039323 scopus 로고    scopus 로고
    • Short interspersed transposable elements (SINEs) are excluded from imprinted regions in the human genome
    • Greally, J. M. 2002. Short interspersed transposable elements (SINEs) are excluded from imprinted regions in the human genome. Proc. Natl. Acad. Sci. USA 99:327-332.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 327-332
    • Greally, J.M.1
  • 14
    • 0034674170 scopus 로고    scopus 로고
    • Alu-mediated phylogenetic novelties in gene regulation and development
    • Hamdi, H. K., H. Nishio, J. Tavis, R. Zielinski, and A. Dugaiczyk. 2000. Alu-mediated phylogenetic novelties in gene regulation and development. J. Mol. Biol. 299:931-939.
    • (2000) J. Mol. Biol. , vol.299 , pp. 931-939
    • Hamdi, H.K.1    Nishio, H.2    Tavis, J.3    Zielinski, R.4    Dugaiczyk, A.5
  • 15
    • 0034682403 scopus 로고    scopus 로고
    • The DNA sequence of human chromosome 21
    • Hattori, M., A. Fujiyama, T. D. Taylor et al. (64 co-authors). 2000. The DNA sequence of human chromosome 21. Nature 405:311-319.
    • (2000) Nature , vol.405 , pp. 311-319
    • Hattori, M.1    Fujiyama, A.2    Taylor, T.D.3
  • 17
    • 0030331832 scopus 로고    scopus 로고
    • Integration of retroposable elements in mammals: Selection of target sites
    • Jurka, J., and P. Klonowski. 1996. Integration of retroposable elements in mammals: selection of target sites. J. Mol. Evol. 43:685-689.
    • (1996) J. Mol. Evol. , vol.43 , pp. 685-689
    • Jurka, J.1    Klonowski, P.2
  • 18
    • 0031894399 scopus 로고    scopus 로고
    • Mammalian retroposons integrate at kinkable DNA sites
    • Jurka, J., P. Klonowski, and E. N. Trifonov. 1998. Mammalian retroposons integrate at kinkable DNA sites. J. Biomol. Struct. Dyn. 15:717-721.
    • (1998) J. Biomol. Struct. Dyn. , vol.15 , pp. 717-721
    • Jurka, J.1    Klonowski, P.2    Trifonov, E.N.3
  • 19
    • 0025736539 scopus 로고
    • Reconstruction and analysis of human Alu genes
    • Jurka, J., and A. Milosavljevic, 1991. Reconstruction and analysis of human Alu genes. J. Mol. Evol. 32:105-121.
    • (1991) J. Mol. Evol. , vol.32 , pp. 105-121
    • Jurka, J.1    Milosavljevic, A.2
  • 20
    • 0342298816 scopus 로고
    • A fundamental division in the Alu family of repeated sequences
    • Jurka, J., and T. Smith. 1988. A fundamental division in the Alu family of repeated sequences. Proc. Natl. Acad. Sci. USA 85:4775-4778.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 4775-4778
    • Jurka, J.1    Smith, T.2
  • 21
    • 0030860770 scopus 로고    scopus 로고
    • Transposable elements as sources of variation in animals and plants
    • Kidwell, M. G., and D. Lisch. 1997. Transposable elements as sources of variation in animals and plants. Proc. Natl. Acad. Sci. USA 94:7704-7711.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 7704-7711
    • Kidwell, M.G.1    Lisch, D.2
  • 22
    • 0023946286 scopus 로고
    • Human genome organization: Alu, lines, and the molecular structure of metaphase chromosome bands
    • Korenberg, J. R., and M. C. Rykowski. 1988. Human genome organization: Alu, lines, and the molecular structure of metaphase chromosome bands. Cell 53:391-400.
    • (1988) Cell , vol.53 , pp. 391-400
    • Korenberg, J.R.1    Rykowski, M.C.2
  • 23
    • 0024558422 scopus 로고
    • Sequence conservation in Alu evolution
    • Labuda, D., and G. Striker. 1989. Sequence conservation in Alu evolution. Nucleic Acids Res. 17:2477-2491.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 2477-2491
    • Labuda, D.1    Striker, G.2
  • 24
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander, E. S., L. M. Linton, B. Birren et al. (255 co-authors). 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921.
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1    Linton, L.M.2    Birren, B.3
  • 25
    • 84981323186 scopus 로고    scopus 로고
    • A CPF site and ALU repeat in the distal promoter region are implicated in regulation of human CETP gene expression
    • Le Goff, W., M. Guerin, M. J. Chapman, and J. Thillet. 2003. A CPF site and ALU repeat in the distal promoter region are implicated in regulation of human CETP gene expression. J. Lipid Res. 16:16.
    • (2003) J. Lipid Res. , vol.16 , pp. 16
    • Le Goff, W.1    Guerin, M.2    Chapman, M.J.3    Thillet, J.4
  • 26
    • 0033491758 scopus 로고    scopus 로고
    • Analysis of mouse intron 7 DNA sequence of the APP gene: Comparison with the human homologue
    • Li, L., T. Ohman, S. S. Deeb, and K. I. Fukuchi. 1999. Analysis of mouse intron 7 DNA sequence of the APP gene: comparison with the human homologue. DNA Seq. 10:219-228.
    • (1999) DNA Seq. , vol.10 , pp. 219-228
    • Li, L.1    Ohman, T.2    Deeb, S.S.3    Fukuchi, K.I.4
  • 28
    • 0035973888 scopus 로고    scopus 로고
    • An Alu cassette in the human epithelial sodium channel
    • Oh, Y. S., S. Lee, C. Won, and D. G. Warnock. 2001. An Alu cassette in the human epithelial sodium channel. Biochim. Biophys. Acta 1520:94-98.
    • (2001) Biochim. Biophys. Acta , vol.1520 , pp. 94-98
    • Oh, Y.S.1    Lee, S.2    Won, C.3    Warnock, D.G.4
  • 29
    • 0035802397 scopus 로고    scopus 로고
    • Similar integration but different stability of Alus and LINEs in the human genome
    • Pavlicek, A., K. Jabbari, J. Paces, V. Paces, J. V. Hejnar, and G. Bernardi. 2001. Similar integration but different stability of Alus and LINEs in the human genome. Gene 276:39-45.
    • (2001) Gene , vol.276 , pp. 39-45
    • Pavlicek, A.1    Jabbari, K.2    Paces, J.3    Paces, V.4    Hejnar, J.V.5    Bernardi, G.6
  • 30
    • 0026551945 scopus 로고
    • Distribution of interspersed repeats (Alu and Kpn) on NotI restriction fragments of human chromosome 21
    • Sainz, J., L. Pevny, Y. Wu, C. R. Cantor, and C. L. Smith. 1992, Distribution of interspersed repeats (Alu and Kpn) on NotI restriction fragments of human chromosome 21. Proc. Natl. Acad. Sci. USA 89:1080-1084.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 1080-1084
    • Sainz, J.1    Pevny, L.2    Wu, Y.3    Cantor, C.R.4    Smith, C.L.5
  • 31
    • 0029685023 scopus 로고    scopus 로고
    • Alu: Structure, origin, evolution, significance and function of one-tenth of human DNA
    • Schmid, C. W. 1996. Alu: structure, origin, evolution, significance and function of one-tenth of human DNA. Prog. Nucleic Acid Res. Mol. Biol. 53:283-319.
    • (1996) Prog. Nucleic Acid Res. Mol. Biol. , vol.53 , pp. 283-319
    • Schmid, C.W.1
  • 32
    • 0035065510 scopus 로고    scopus 로고
    • Retrotransposons as epigenefic mediators of phenotypic variation in mammals
    • Whitelaw, E., and D. I. Martin. 2001. Retrotransposons as epigenefic mediators of phenotypic variation in mammals. Nat. Genet. 27:361-365.
    • (2001) Nat. Genet. , vol.27 , pp. 361-365
    • Whitelaw, E.1    Martin, D.I.2
  • 33
    • 0023478607 scopus 로고
    • Existence of at least three distinct Alu subfamilies
    • Willard, C., H. T. Nguyen, and C. W. Schmid. 1987. Existence of at least three distinct Alu subfamilies. J. Mol. Evol. 26:180-186.
    • (1987) J. Mol. Evol. , vol.26 , pp. 180-186
    • Willard, C.1    Nguyen, H.T.2    Schmid, C.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.