Genomewide analysis of Drosophila GAGA factor target genes reveals context-dependent DNA binding

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 5, 2003, Pages 2580-2585

  Van Steensel, Bas ^a,d   Delrow, Jeffrey ^b   Bussemaker, Harmen J ^c,d  

^a NETHERLANDS CANCER INSTITUTE   (Netherlands)

^b Fred Hutchinson Cancer Research Center   (United States)

^c Och Spine at New York Presbyterian Hospitals   (United States)

^d UNIVERSITY OF AMSTERDAM   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; DNA; GAGA FACTOR; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

ARTICLE; CHROMATIN; DNA BINDING; DROSOPHILA; EXON; GENETIC TRANSCRIPTION; GENOME; INTRON; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; TRANSCRIPTION REGULATION;

AMINO ACID MOTIFS; ANIMALS; CHROMATIN; DNA; DNA METHYLATION; DNA, COMPLEMENTARY; DNA-BINDING PROTEINS; DROSOPHILA; DROSOPHILA PROTEINS; EXONS; EXPRESSED SEQUENCE TAGS; GENOME; HOMEODOMAIN PROTEINS; INTRONS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEIN BINDING; REGRESSION ANALYSIS; SOFTWARE; TIME FACTORS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 0037418234     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0438000100     Document Type: Article

References (28)

1. Biggin, M. D. (2001) Nat. Genet. 28, 303-304.
2. Farkas, G., Gausz, J., Galloni, M., Reuter, G., Gyurkovics, H. & Karch, F. (1994) Nature 371, 806-808.
3. Croston, G. E., Kerrigan, L. A., Lira, L. M., Marshak, D. R. & Kadonaga, J. T. (1991) Science 251, 643-649.
4. Lu, Q., Wallrath, L. L., Granok, H. & Elgin, S. C. (1993) Mol. Cell. Biol. 13, 2802-2814.
5. Weber, J. A., Taxman, D. J., Lu, Q. & Gilmour, D. S. (1997) Mol. Cell. Biol. 17, 3799-3808.
6. Okada, M. & Hirose, S. (1998) Mol. Cell. Biol. 18, 2455-2561.
7. Hagstrom, K., Muller, M. & Schedl, P. (1997) Genetics 146, 1365-1380.
8. Mishra, R. K., Mihaly, J., Barges, S., Spierer, A., Karch, F., Hagstrom, K., Schweinsberg, S. E. & Schedl, P. (2001) Mol. Cell. Biol. 21, 1311-1318.
9. Wall, G., Varga-Weisz, P. D., Sandaltzopoulos, R. & Becker, P. B. (1995) EMBO J. 14, 1727-1736.
10. Bhat, K. M., Farkas, G., Karch, F., Gyurkovics, H., Gausz, J. & Schedl, P. (1996) Development (Cambridge, U.K.) 122, 1113-1124.
11. Omichinski, J. G., Pedone, P. V., Felsenfeld, G., Gronenborn, A. M. & Clore, G. M. (1997) Nat. Struct. Biol. 4, 122-132.
12. Wilkins, R. C. & Lis, J. T. (1997) Nucleic Acids Res. 25, 3963-3968.
13. Tsukiyama, T., Becker, P. B. & Wu, C. (1994) Nature 367, 525-532.
14. O'Brien, T., Wilkins, R. C., Giardina, C. & Lis, J. T. (1995) Genes Dev. 9, 1098-1110.
15. Strutt, H., Cavalli, G. & Paro, R. (1997) EMBO J. 16, 3621-3632.
16. van Steensel, B., Delrow, J. & Henikoff, S. (2001) Nat. Genet. 27, 304-308.
17. Benyajati, C., Mueller, L., Xu, N., Pappano, M., Gao, J., Mosammaparast, M., Conklin, D., Granok, H., Craig, C. & Elgin, S. (1997) Nucleic Acids Res. 25, 3345-3353.
18. Platero, J. S., Csink, A. K., Quintanilla, A. & Henikoff, S. (1998) J. Cell Biol. 140, 1297-1306.
19. van Steensel, B. & Henikoff, S. (2000) Nat. Biotechnol. 18, 424-428.
20. Rubin, G. M., Hong, L., Brokstein, P., Evans-Holm, M., Frise, E., Stapleton, M. & Harvey, D. A. (2000) Science 287, 2222-2224.
21. Long, A. D., Mangalam, H. J., Chan, B. Y., Tolleri, L., Hatfield, G. W. & Baldi, P. (2001) J. Biol. Chem. 276, 19937-19944.
22. Benjamini, Y. & Hochberg, Y. (1995) J. R. Stat. Soc. B 57, 289-300.
23. Bussemaker, H. J., Li, H. & Siggia, E. D. (2001) Nat. Genet. 27, 167-171.
24. Wilkins, R. C. & Lis, J. T. (1998) Nucleic Acids Res. 26, 2672-2678.
25. Granok, H., Leibovitch, B. A., Shaffer, C. D. & Elgin, S. C. (1995) Curr. Biol. 5, 238-241.
26. Katsani, K. R., Hajibagheri, M. A. & Verrijzer, C. P. (1999) EMBO J. 18, 698-708.
27. Espinás, M. L., Jimenez-Garcia, E., Vaquero, A., Canudas, S., Bernues, J. & Azorin, F. (1999) J. Biol. Chem. 274, 16461-16469.
28. Lieb, J. D., Liu, X., Botstein, D. & Brown, P. O. (2001) Nat. Genet. 28, 327-334.