Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome

Genome Research

Volumn 11, Issue 10, 2001, Pages 1660-1676

  Meyers, B C ^a   Tingey, S V ^a   Morgante, M ^a  

^a DUPONT COMPANY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENE PRODUCT; INTEGRASE; PROTEIN HUCK; PROTEIN JI; PROTEIN OPIE; RNA DIRECTED DNA POLYMERASE; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; COMPARATIVE STUDY; CONTROLLED STUDY; DATA BASE; DNA HYBRIDIZATION; DNA LIBRARY; DNA SEQUENCE; GENE CONSTRUCT; GENE EXPRESSION; GENE LIBRARY; GENETIC ANALYSIS; GENETIC CODE; GENETIC TRANSCRIPTION; GENOME; INFORMATION; LONG TERMINAL REPEAT; MAIZE; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN ISOLATION; PUBLICATION; RANDOMIZATION; RETROPOSON; RICE; SEQUENCE ANALYSIS; SEQUENCE TAGGED SITE; SPECIES;

CHROMOSOMES, ARTIFICIAL, BACTERIAL; DNA, INTERGENIC; GC RICH SEQUENCE; GENOME, PLANT; MULTIGENE FAMILY; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RETROELEMENTS; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; TRANSCRIPTION, GENETIC; ZEA MAYS;

BACTERIA (MICROORGANISMS); EMBRYOPHYTA; EUKARYOTA; ZEA MAYS;

EID: 0034755894     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.188201     Document Type: Article

References (63)

1. Transcription sites are not correlated with chromosome territories in wheat nuclei
2. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
3. Chromosome-specific molecular organization of maize (Zea mays L.) centromeric regions
4. Complex structure of knob DNA on maize choromosome 9: Retrotransposon invasion into heterochromatin
5. Nuclear DNA content of some important plant species
6. The distribution of genes in the genomes of Gramineae
7. Distribution of genes in the genome of Arabidopsis thaliana and its implications for the genome organization of plants
8. The distribution of T-DNA in the genomes of transgenic Arabidopsis and rice
9. Active maize genes are unmodified and flanked by diverse classes of modified, highly repetitive DNA
10. The contributions of retroelements to plant genome organization, function and evolution
11. Comparative sequence analysis of plant nuclear genomes Microcolinearity and its many exceptions
12. Do plants have a one-way ticket to genome obesity?
13. The isochore organization of the human genome
14. G+C content variation along and among the Saccharomyces cerevisiae chromosomes
15. Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome
16. Meiotic drive of chromosomal knobs reshaped the maize genome
17. The gene distribution of the maize genome
18. Two classes of genes in plants
19. Sequence organization and conservation in sh2/a1-homologous regions of sorghum and rice
20. Fine structure and evolution of the rDNA intergenic spacer in rice and other cereals
21. Knob heterochromatin homology in maize and its relatives
22. Bacterial cloning systems
23. Characterisation of four dispersed repetitive DNA sequences from Zea mays and their use in constructing contiguous DNA fragments using YAC clones
24. Generation and analysis of 25 Mb of genomic DNA from the pufferfish Fugu rubripes by sequence scanning
25. High gene density is conserved at syntenic loci of small and large grass genomes
26. Ty1-copia group retrotransposons and the evolution of retroelements in the eukaryotes
27. Extreme heterogeneity of Ty1-copia group retrotransposons in plants
28. Genome size and the proportion of repeated nucleotide sequence DNA in plants
29. Identification and high-density mapping of gene-rich regions in chromosome group 1 of wheat
30. Consed: A graphical tool for sequence finishing
31. The genome of Zea mays, its organization and homology to related grasses
32. The chromosomal distributions of Ty1-copia group retrotransposable elements in higher plants and their implications for genome evolution
33. Speciation and domestication in maize and its wild relatives: Evidence from the globulin-1 gene
34. Silencing of retrotransposons in Arabidopsis and reactivation by the ddm1 mutation
35. Zeon-1, a member of a new maize retrotransposon family
36. Initial sequencing and analysis of the human genome
37. Evolution of the copia retrotransposon in the Drosophila melanogaster species subgroup
38. Plant retrotransposons
39. An abundant LINE-like element amplified in the genome of Lilium speciosum
40. Amplicons of maize zein genes are conserved within genic but expanded and constricted in intergenic regions
41. Complete sequence of the maize chloroplast genome: Gene content, hotspots of divergence and fine tuning of genetic information by transcript editing
42. Rice transposable elements: A survey of 73,000 sequence-tagged connectors
43. Extreme structural heterogeneity among the members of a maize retrotransposon family
44. A contiguous 60 kb genomic stretch from barley reveals molecular evidence for gene islands in a monocot genome
45. The Ty1-copia group retrotransposons in Vicia species: Copy number, sequence heterogeneity and chromosomal localisation
46. Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome
47. Nested retrotransposons in the intergenic regions of the maize genome
48. The paleontology of intergene retrotransposons of maize
49. A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion
50. Gypsy-like retrotransposons are widespread in the plant kingdom
51. BARE-1 insertion site preferences and evolutionary conservation of RNA and cDNA processing sites
52. Evolution of the Gypsy endogenous retrovirus in the Drosophila melanogaster subgroup
53. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
54. Colinearity and its exceptions in orthologous adh regions of maize and sorghum
55. PREM-1, a putative maize retroelement has LTR (long terminal repeat) sequences that are preferentially transcribed in pollen
56. The sequence of the human genome
57. Retrotransposon BARE-1 and its role in genome evolution in the genus Hordeum
58. Copia-like retrotransposons are ubiquitous among plants
59. Retrotransposons in the flanking regions of normal plant genes: A role for copia-like elements in the evolution of gene structure and expression
60. Shotgun sequencing
61. Molecular characterization of a short interspersed repetitive element from tobacco that exhibits sequences homology to specific tRNAs