-
1
-
-
39349083915
-
Adapting proteostasis for disease intervention
-
18276881, .;():–. Epub 2008/02/16
-
Balch WE, Morimoto RI, Dillin A, Kelly JW, Adapting proteostasis for disease intervention. Science. 2008;319(5865):916–9. Epub 2008/02/16. doi: 10.1126/science.114144818276881
-
(2008)
Science
, vol.319
, Issue.5865
, pp. 916-919
-
-
Balch, W.E.1
Morimoto, R.I.2
Dillin, A.3
Kelly, J.W.4
-
3
-
-
33847066706
-
Functions of the proteasome: from protein degradation and immune surveillance to cancer therapy
-
17212580
-
Goldberg AL, Functions of the proteasome: from protein degradation and immune surveillance to cancer therapy. Biochem Soc Trans. 2007;35(Pt 1):12–7. 17212580
-
(2007)
Biochem Soc Trans
, vol.35
, pp. 12-17
-
-
Goldberg, A.L.1
-
4
-
-
65649115267
-
Recognition and processing of ubiquitin-protein conjugates by the proteasome
-
19489727, .;:–
-
Finley D, Recognition and processing of ubiquitin-protein conjugates by the proteasome. Annual review of biochemistry. 2009;78:477–513. doi: 10.1146/annurev.biochem.78.081507.10160719489727
-
(2009)
Annual review of biochemistry
, vol.78
, pp. 477-513
-
-
Finley, D.1
-
5
-
-
34548274872
-
Docking of the proteasomal ATPases' carboxyl termini in the 20S proteasome's alpha ring opens the gate for substrate entry
-
17803938
-
Smith DM, Chang SC, Park S, Finley D, Cheng Y, Goldberg AL, Docking of the proteasomal ATPases' carboxyl termini in the 20S proteasome's alpha ring opens the gate for substrate entry. Mol Cell. 2007;27(5):731–44. 17803938
-
(2007)
Mol Cell
, vol.27
, Issue.5
, pp. 731-744
-
-
Smith, D.M.1
Chang, S.C.2
Park, S.3
Finley, D.4
Cheng, Y.5
Goldberg, A.L.6
-
6
-
-
71149107057
-
Ubiquitinated proteins activate the proteasome by binding to Usp14/Ubp6, which causes 20S gate opening
-
20005843
-
Peth A, Besche HC, Goldberg AL, Ubiquitinated proteins activate the proteasome by binding to Usp14/Ubp6, which causes 20S gate opening. Mol Cell. 2009;36(5):794–804. doi: 10.1016/j.molcel.2009.11.01520005843
-
(2009)
Mol Cell
, vol.36
, Issue.5
, pp. 794-804
-
-
Peth, A.1
Besche, H.C.2
Goldberg, A.L.3
-
7
-
-
0037248908
-
ATP hydrolysis by the proteasome regulatory complex PAN serves multiple functions in protein degradation
-
12535522
-
Benaroudj N, Zwickl P, Seemuller E, Baumeister W, Goldberg AL, ATP hydrolysis by the proteasome regulatory complex PAN serves multiple functions in protein degradation. Mol Cell. 2003;11(1):69–78. 12535522
-
(2003)
Mol Cell
, vol.11
, Issue.1
, pp. 69-78
-
-
Benaroudj, N.1
Zwickl, P.2
Seemuller, E.3
Baumeister, W.4
Goldberg, A.L.5
-
8
-
-
0035266072
-
ATP-dependent proteases degrade their substrates by processively unraveling them from the degradation signal
-
11463387
-
Lee C, Schwartz MP, Prakash S, Iwakura M, Matouschek A, ATP-dependent proteases degrade their substrates by processively unraveling them from the degradation signal. Mol Cell. 2001;7(3):627–37. 11463387
-
(2001)
Mol Cell
, vol.7
, Issue.3
, pp. 627-637
-
-
Lee, C.1
Schwartz, M.P.2
Prakash, S.3
Iwakura, M.4
Matouschek, A.5
-
9
-
-
0035694696
-
Proteins are unfolded on the surface of the ATPase ring before transport into the proteasome
-
11779508
-
Navon A, Goldberg AL, Proteins are unfolded on the surface of the ATPase ring before transport into the proteasome. Mol Cell. 2001;8(6):1339–49. 11779508
-
(2001)
Mol Cell
, vol.8
, Issue.6
, pp. 1339-1349
-
-
Navon, A.1
Goldberg, A.L.2
-
10
-
-
0037179694
-
A cryptic protease couples deubiquitination and degradation by the proteasome
-
12353037
-
Yao T, Cohen RE, A cryptic protease couples deubiquitination and degradation by the proteasome. Nature. 2002;419(6905):403–7. 12353037
-
(2002)
Nature
, vol.419
, Issue.6905
, pp. 403-407
-
-
Yao, T.1
Cohen, R.E.2
-
11
-
-
0037131243
-
Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome
-
12183636
-
Verma R, Aravind L, Oania R, McDonald WH, Yates JR, 3rdKoonin EV, et al. Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome. Science. 2002;298(5593):611–5. 12183636
-
(2002)
Science
, vol.298
, Issue.5593
, pp. 611-615
-
-
Verma, R.1
Aravind, L.2
Oania, R.3
McDonald, W.H.4
Yates, J.R.5
Koonin, E.V.6
-
12
-
-
0033525086
-
The sizes of peptides generated from protein by mammalian 26 and 20 S proteasomes. Implications for understanding the degradative mechanism and antigen presentation
-
9920878
-
Kisselev AF, Akopian TN, Woo KM, Goldberg AL, The sizes of peptides generated from protein by mammalian 26 and 20 S proteasomes. Implications for understanding the degradative mechanism and antigen presentation. J Biol Chem. 1999;274(6):3363–71. 9920878
-
(1999)
J Biol Chem
, vol.274
, Issue.6
, pp. 3363-3371
-
-
Kisselev, A.F.1
Akopian, T.N.2
Woo, K.M.3
Goldberg, A.L.4
-
13
-
-
8744237281
-
Pathway for degradation of peptides generated by proteasomes: a key role for thimet oligopeptidase and other metallopeptidases
-
15328361
-
Saric T, Graef CI, Goldberg AL, Pathway for degradation of peptides generated by proteasomes: a key role for thimet oligopeptidase and other metallopeptidases. J Biol Chem. 2004;279(45):46723–32. 15328361
-
(2004)
J Biol Chem
, vol.279
, Issue.45
, pp. 46723-46732
-
-
Saric, T.1
Graef, C.I.2
Goldberg, A.L.3
-
14
-
-
0035050618
-
Caretaker or undertaker? The role of the proteasome in aging
-
11311314
-
Gaczynska M, Osmulski PA, Ward WF, Caretaker or undertaker? The role of the proteasome in aging. Mech Ageing Dev. 2001;122(3):235–54. 11311314
-
(2001)
Mech Ageing Dev
, vol.122
, Issue.3
, pp. 235-254
-
-
Gaczynska, M.1
Osmulski, P.A.2
Ward, W.F.3
-
15
-
-
0035139109
-
Cellular defenses against unfolded proteins: a cell biologist thinks about neurodegenerative diseases
-
11182078
-
Sherman MY, Goldberg AL, Cellular defenses against unfolded proteins: a cell biologist thinks about neurodegenerative diseases. Neuron. 2001;29(1):15–32. 11182078
-
(2001)
Neuron
, vol.29
, Issue.1
, pp. 15-32
-
-
Sherman, M.Y.1
Goldberg, A.L.2
-
16
-
-
34250882745
-
Regulation of Caenorhabditis elegans lifespan by a proteasomal E3 ligase complex
-
17392428
-
Ghazi A, Henis-Korenblit S, Kenyon C, Regulation of Caenorhabditis elegans lifespan by a proteasomal E3 ligase complex. Proc Natl Acad Sci U S A. 2007;104(14):5947–52. 17392428
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, Issue.14
, pp. 5947-5952
-
-
Ghazi, A.1
Henis-Korenblit, S.2
Kenyon, C.3
-
17
-
-
70349266064
-
Collapse of proteostasis represents an early molecular event in Caenorhabditis elegans aging
-
19706382
-
Ben-Zvi A, Miller EA, Morimoto RI, Collapse of proteostasis represents an early molecular event in Caenorhabditis elegans aging. Proc Natl Acad Sci U S A. 2009;106(35):14914–9. doi: 10.1073/pnas.090288210619706382
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, Issue.35
, pp. 14914-14919
-
-
Ben-Zvi, A.1
Miller, E.A.2
Morimoto, R.I.3
-
18
-
-
84883750565
-
Proteasome dysfunction in Drosophila signals to an Nrf2-dependent regulatory circuit aiming to restore proteostasis and prevent premature aging
-
23738891
-
Tsakiri EN, Sykiotis GP, Papassideri IS, Terpos E, Dimopoulos MA, Gorgoulis VG, et al. Proteasome dysfunction in Drosophila signals to an Nrf2-dependent regulatory circuit aiming to restore proteostasis and prevent premature aging. Aging Cell. 2013;12(5):802–13. doi: 10.1111/acel.1211123738891
-
(2013)
Aging Cell
, vol.12
, Issue.5
, pp. 802-813
-
-
Tsakiri, E.N.1
Sykiotis, G.P.2
Papassideri, I.S.3
Terpos, E.4
Dimopoulos, M.A.5
Gorgoulis, V.G.6
-
19
-
-
84894254592
-
Proteostasis and longevity: when does aging really begin?
-
24592319
-
Labbadia J, Morimoto RI, Proteostasis and longevity: when does aging really begin?F1000prime reports. 2014;6:7. doi: 10.12703/P6-724592319
-
(2014)
F1000prime reports
, vol.6
, pp. 7
-
-
Labbadia, J.1
Morimoto, R.I.2
-
20
-
-
84898834965
-
Proteasome activation delays aging in vitro and in vivo
-
24681338, .;:–
-
Chondrogianni N, Sakellari M, Lefaki M, Papaevgeniou N, Gonos ES, Proteasome activation delays aging in vitro and in vivo. Free Radic Biol Med. 2014;71:303–20. doi: 10.1016/j.freeradbiomed.2014.03.03124681338
-
(2014)
Free Radic Biol Med
, vol.71
, pp. 303-320
-
-
Chondrogianni, N.1
Sakellari, M.2
Lefaki, M.3
Papaevgeniou, N.4
Gonos, E.S.5
-
21
-
-
77950366349
-
Transcription factor Nrf1 mediates the proteasome recovery pathway after proteasome inhibition in mammalian cells
-
20385086
-
Radhakrishnan SK, Lee CS, Young P, Beskow A, Chan JY, Deshaies RJ, Transcription factor Nrf1 mediates the proteasome recovery pathway after proteasome inhibition in mammalian cells. Mol Cell. 2010;38(1):17–28. doi: 10.1016/j.molcel.2010.02.02920385086
-
(2010)
Mol Cell
, vol.38
, Issue.1
, pp. 17-28
-
-
Radhakrishnan, S.K.1
Lee, C.S.2
Young, P.3
Beskow, A.4
Chan, J.Y.5
Deshaies, R.J.6
-
22
-
-
79959823394
-
Specific SKN-1/Nrf stress responses to perturbations in translation elongation and proteasome activity
-
21695230, .;():
-
Li X, Matilainen O, Jin C, Glover-Cutter KM, Holmberg CI, Blackwell TK, Specific SKN-1/Nrf stress responses to perturbations in translation elongation and proteasome activity. PLoS Genet. 2011;7(6):e1002119. doi: 10.1371/journal.pgen.100211921695230
-
(2011)
PLoS Genet
, vol.7
, Issue.6
, pp. e1002119
-
-
Li, X.1
Matilainen, O.2
Jin, C.3
Glover-Cutter, K.M.4
Holmberg, C.I.5
Blackwell, T.K.6
-
23
-
-
84890203542
-
Regulation of proteasome activity in health and disease
-
23994620
-
Schmidt M, Finley D, Regulation of proteasome activity in health and disease. Biochimica et biophysica acta. 2014;1843(1):13–25. doi: 10.1016/j.bbamcr.2013.08.01223994620
-
(2014)
Biochimica et biophysica acta
, vol.1843
, Issue.1
, pp. 13-25
-
-
Schmidt, M.1
Finley, D.2
-
24
-
-
33748439489
-
An arsenite-inducible 19S regulatory particle-associated protein adapts proteasomes to proteotoxicity
-
16973439, ..;():–. Epub 2006/09/16
-
Stanhill A, Haynes CM, Zhang Y, Min G, Steele MC, Kalinina J, et al. An arsenite-inducible 19S regulatory particle-associated protein adapts proteasomes to proteotoxicity. Mol Cell. 2006;23(6):875–85. Epub 2006/09/16. 16973439
-
(2006)
Mol Cell
, vol.23
, Issue.6
, pp. 875-885
-
-
Stanhill, A.1
Haynes, C.M.2
Zhang, Y.3
Min, G.4
Steele, M.C.5
Kalinina, J.6
-
25
-
-
44349160257
-
Proteasomal adaptation to environmental stress links resistance to proteotoxicity with longevity in Caenorhabditis elegans
-
18467495, ..;():–. Epub 2008/05/10
-
Yun C, Stanhill A, Yang Y, Zhang Y, Haynes CM, Xu CF, et al. Proteasomal adaptation to environmental stress links resistance to proteotoxicity with longevity in Caenorhabditis elegans. Proc Natl Acad Sci U S A. 2008;105(19):7094–9. Epub 2008/05/10. doi: 10.1073/pnas.070702510518467495
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, Issue.19
, pp. 7094-7099
-
-
Yun, C.1
Stanhill, A.2
Yang, Y.3
Zhang, Y.4
Haynes, C.M.5
Xu, C.F.6
-
26
-
-
77952647809
-
skn-1-Dependent and -independent regulation of aip-1 expression following metabolic stress in Caenorhabditis elegans
-
20351174, .;():–. Epub 2010/03/31
-
Ferguson AA, Springer MG, Fisher AL, skn-1-Dependent and -independent regulation of aip-1 expression following metabolic stress in Caenorhabditis elegans. Mol Cell Biol. 2010;30(11):2651–67. Epub 2010/03/31. doi: 10.1128/MCB.01340-0920351174
-
(2010)
Mol Cell Biol
, vol.30
, Issue.11
, pp. 2651-2667
-
-
Ferguson, A.A.1
Springer, M.G.2
Fisher, A.L.3
-
27
-
-
33845448653
-
Proteasomal ubiquitin receptor RPN-10 controls sex determination in Caenorhabditis elegans
-
17050737
-
Shimada M, Kanematsu K, Tanaka K, Yokosawa H, Kawahara H, Proteasomal ubiquitin receptor RPN-10 controls sex determination in Caenorhabditis elegans. Mol Biol Cell. 2006;17(12):5356–71. 17050737
-
(2006)
Mol Biol Cell
, vol.17
, Issue.12
, pp. 5356-5371
-
-
Shimada, M.1
Kanematsu, K.2
Tanaka, K.3
Yokosawa, H.4
Kawahara, H.5
-
28
-
-
0034774617
-
A protein-protein interaction map of the Caenorhabditis elegans 26S proteasome
-
11559592
-
Davy A, Bello P, Thierry-Mieg N, Vaglio P, Hitti J, Doucette-Stamm L, et al. A protein-protein interaction map of the Caenorhabditis elegans 26S proteasome. EMBO reports. 2001;2(9):821–8. 11559592
-
(2001)
EMBO reports
, vol.2
, Issue.9
, pp. 821-828
-
-
Davy, A.1
Bello, P.2
Thierry-Mieg, N.3
Vaglio, P.4
Hitti, J.5
Doucette-Stamm, L.6
-
29
-
-
0029806477
-
The multiubiquitin-chain-binding protein Mcb1 is a component of the 26S proteasome in Saccharomyces cerevisiae and plays a nonessential, substrate-specific role in protein turnover
-
8887631
-
van Nocker S, Sadis S, Rubin DM, Glickman M, Fu H, Coux O, et al. The multiubiquitin-chain-binding protein Mcb1 is a component of the 26S proteasome in Saccharomyces cerevisiae and plays a nonessential, substrate-specific role in protein turnover. Mol Cell Biol. 1996;16(11):6020–8. 8887631
-
(1996)
Mol Cell Biol
, vol.16
, Issue.11
, pp. 6020-6028
-
-
van Nocker, S.1
Sadis, S.2
Rubin, D.M.3
Glickman, M.4
Fu, H.5
Coux, O.6
-
30
-
-
44349116590
-
Proteasome subunit Rpn13 is a novel ubiquitin receptor
-
18497817
-
Husnjak K, Elsasser S, Zhang N, Chen X, Randles L, Shi Y, et al. Proteasome subunit Rpn13 is a novel ubiquitin receptor. Nature. 2008;453(7194):481–8. doi: 10.1038/nature0692618497817
-
(2008)
Nature
, vol.453
, Issue.7194
, pp. 481-488
-
-
Husnjak, K.1
Elsasser, S.2
Zhang, N.3
Chen, X.4
Randles, L.5
Shi, Y.6
-
31
-
-
44349094727
-
Ubiquitin docking at the proteasome through a novel pleckstrin-homology domain interaction
-
18497827
-
Schreiner P, Chen X, Husnjak K, Randles L, Zhang N, Elsasser S, et al. Ubiquitin docking at the proteasome through a novel pleckstrin-homology domain interaction. Nature. 2008;453(7194):548–52. doi: 10.1038/nature0692418497827
-
(2008)
Nature
, vol.453
, Issue.7194
, pp. 548-552
-
-
Schreiner, P.1
Chen, X.2
Husnjak, K.3
Randles, L.4
Zhang, N.5
Elsasser, S.6
-
32
-
-
0036661040
-
Reverse genetic analysis of the Caenorhabditis elegans 26S proteasome subunits by RNA interference
-
12437114
-
Takahashi M, Iwasaki H, Inoue H, Takahashi K, Reverse genetic analysis of the Caenorhabditis elegans 26S proteasome subunits by RNA interference. Biological chemistry. 2002;383(7–8):1263–6. 12437114
-
(2002)
Biological chemistry
, vol.383
, Issue.7-8
, pp. 1263-1266
-
-
Takahashi, M.1
Iwasaki, H.2
Inoue, H.3
Takahashi, K.4
-
33
-
-
84865266808
-
A genome-scale resource for in vivo tag-based protein function exploration in C. elegans
-
22901814
-
Sarov M, Murray JI, Schanze K, Pozniakovski A, Niu W, Angermann K, et al. A genome-scale resource for in vivo tag-based protein function exploration in C. elegans. Cell. 2012;150(4):855–66. doi: 10.1016/j.cell.2012.08.00122901814
-
(2012)
Cell
, vol.150
, Issue.4
, pp. 855-866
-
-
Sarov, M.1
Murray, J.I.2
Schanze, K.3
Pozniakovski, A.4
Niu, W.5
Angermann, K.6
-
34
-
-
33745192054
-
The nuclear ubiquitin-proteasome system
-
16687735
-
von Mikecz A, The nuclear ubiquitin-proteasome system. J Cell Sci. 2006;119(Pt 10):1977–84. 16687735
-
(2006)
J Cell Sci
, vol.119
, pp. 1977-1984
-
-
von Mikecz, A.1
-
35
-
-
77958604450
-
Structure of Rpn10 and its interactions with polyubiquitin chains and the proteasome subunit Rpn12
-
20739285
-
Riedinger C, Boehringer J, Trempe JF, Lowe ED, Brown NR, Gehring K, et al. Structure of Rpn10 and its interactions with polyubiquitin chains and the proteasome subunit Rpn12. J Biol Chem. 2010;285(44):33992–4003. doi: 10.1074/jbc.M110.13451020739285
-
(2010)
J Biol Chem
, vol.285
, Issue.44
, pp. 33992-34003
-
-
Riedinger, C.1
Boehringer, J.2
Trempe, J.F.3
Lowe, E.D.4
Brown, N.R.5
Gehring, K.6
-
36
-
-
79955366725
-
A screenable in vivo assay to study proteostasis networks in Caenorhabditis elegans
-
21288877
-
Segref A, Torres S, Hoppe T, A screenable in vivo assay to study proteostasis networks in Caenorhabditis elegans. Genetics. 2011;187(4):1235–40. doi: 10.1534/genetics.111.12679721288877
-
(2011)
Genetics
, vol.187
, Issue.4
, pp. 1235-1240
-
-
Segref, A.1
Torres, S.2
Hoppe, T.3
-
37
-
-
0035069707
-
Arsenite-inducible RNA-associated protein (AIRAP) protects cells from arsenite toxicity
-
11525245, .;():–. Epub 2001/08/30
-
Sok J, Calfon M, Lu J, Lichtlen P, Clark SG, Ron D, Arsenite-inducible RNA-associated protein (AIRAP) protects cells from arsenite toxicity. Cell Stress Chaperones. 2001;6(1):6–15. Epub 2001/08/30. 11525245
-
(2001)
Cell Stress Chaperones
, vol.6
, Issue.1
, pp. 6-15
-
-
Sok, J.1
Calfon, M.2
Lu, J.3
Lichtlen, P.4
Clark, S.G.5
Ron, D.6
-
38
-
-
0029984892
-
Degradation of oxidized proteins in K562 human hematopoietic cells by proteasome
-
8663134
-
Grune T, Reinheckel T, Davies KJ, Degradation of oxidized proteins in K562 human hematopoietic cells by proteasome. J Biol Chem. 1996;271(26):15504–9. 8663134
-
(1996)
J Biol Chem
, vol.271
, Issue.26
, pp. 15504-15509
-
-
Grune, T.1
Reinheckel, T.2
Davies, K.J.3
-
39
-
-
0028912676
-
Proteolysis in cultured liver epithelial cells during oxidative stress. Role of the multicatalytic proteinase complex, proteasome
-
7836468
-
Grune T, Reinheckel T, Joshi M, Davies KJ, Proteolysis in cultured liver epithelial cells during oxidative stress. Role of the multicatalytic proteinase complex, proteasome. J Biol Chem. 1995;270(5):2344–51. 7836468
-
(1995)
J Biol Chem
, vol.270
, Issue.5
, pp. 2344-2351
-
-
Grune, T.1
Reinheckel, T.2
Joshi, M.3
Davies, K.J.4
-
40
-
-
33747083190
-
Genome-wide RNAi screening identifies protein damage as a regulator of osmoprotective gene expression
-
16880390, .;():–. Epub 2006/08/02
-
Lamitina T, Huang CG, Strange K, Genome-wide RNAi screening identifies protein damage as a regulator of osmoprotective gene expression. Proc Natl Acad Sci U S A. 2006;103(32):12173–8. Epub 2006/08/02. 16880390
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, Issue.32
, pp. 12173-12178
-
-
Lamitina, T.1
Huang, C.G.2
Strange, K.3
-
41
-
-
2342652188
-
Genome-wide RNA interference screen identifies previously undescribed regulators of polyglutamine aggregation
-
..;():–
-
Nollen EA, Garcia SM, van HG, Kim S, Chavez A, Morimoto RI, et al. Genome-wide RNA interference screen identifies previously undescribed regulators of polyglutamine aggregation. ProcNatlAcadSciUSA. 2004;101(17):6403–8.
-
(2004)
ProcNatlAcadSciUSA
, vol.101
, Issue.17
, pp. 6403-6408
-
-
Nollen, E.A.1
Garcia, S.M.2
van, H.G.3
Kim, S.4
Chavez, A.5
Morimoto, R.I.6
-
42
-
-
0034946830
-
Effect of proteasome inhibition on cellular oxidative damage, antioxidant defences and nitric oxide production
-
11432971
-
Lee MH, Hyun DH, Jenner P, Halliwell B, Effect of proteasome inhibition on cellular oxidative damage, antioxidant defences and nitric oxide production. J Neurochem. 2001;78(1):32–41. 11432971
-
(2001)
J Neurochem
, vol.78
, Issue.1
, pp. 32-41
-
-
Lee, M.H.1
Hyun, D.H.2
Jenner, P.3
Halliwell, B.4
-
43
-
-
0037860832
-
Role of the proteasome in protein oxidation and neural viability following low-level oxidative stress
-
12832045
-
Ding Q, Reinacker K, Dimayuga E, Nukala V, Drake J, Butterfield DA, et al. Role of the proteasome in protein oxidation and neural viability following low-level oxidative stress. FEBS Lett. 2003;546(2–3):228–32. 12832045
-
(2003)
FEBS Lett
, vol.546
, Issue.2-3
, pp. 228-232
-
-
Ding, Q.1
Reinacker, K.2
Dimayuga, E.3
Nukala, V.4
Drake, J.5
Butterfield, D.A.6
-
44
-
-
3042811126
-
A single amino acid substitution in a proteasome subunit triggers aggregation of ubiquitinated proteins in stressed neuronal cells
-
15198663
-
Li Z, Arnaud L, Rockwell P, Figueiredo-Pereira ME, A single amino acid substitution in a proteasome subunit triggers aggregation of ubiquitinated proteins in stressed neuronal cells. J Neurochem. 2004;90(1):19–28. 15198663
-
(2004)
J Neurochem
, vol.90
, Issue.1
, pp. 19-28
-
-
Li, Z.1
Arnaud, L.2
Rockwell, P.3
Figueiredo-Pereira, M.E.4
-
45
-
-
84873417130
-
A conserved role for the 20S proteasome and Nrf2 transcription factor in oxidative stress adaptation in mammals, Caenorhabditis elegans and Drosophila melanogaster
-
23038734
-
Pickering AM, Staab TA, Tower J, Sieburth D, Davies KJ, A conserved role for the 20S proteasome and Nrf2 transcription factor in oxidative stress adaptation in mammals, Caenorhabditis elegans and Drosophila melanogaster. The Journal of experimental biology. 2013;216(Pt 4):543–53. doi: 10.1242/jeb.07475723038734
-
(2013)
The Journal of experimental biology
, vol.216
, pp. 543-553
-
-
Pickering, A.M.1
Staab, T.A.2
Tower, J.3
Sieburth, D.4
Davies, K.J.5
-
46
-
-
0034646426
-
Effects of heat shock, heat shock protein 40 (HDJ-2), and proteasome inhibition on protein aggregation in cellular models of Huntington's disease
-
10717003
-
Wyttenbach A, Carmichael J, Swartz J, Furlong RA, Narain Y, Rankin J, et al. Effects of heat shock, heat shock protein 40 (HDJ-2), and proteasome inhibition on protein aggregation in cellular models of Huntington's disease. Proc Natl Acad Sci U S A. 2000;97(6):2898–903. 10717003
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, Issue.6
, pp. 2898-2903
-
-
Wyttenbach, A.1
Carmichael, J.2
Swartz, J.3
Furlong, R.A.4
Narain, Y.5
Rankin, J.6
-
47
-
-
0002858113
-
Proteasome inhibitors cause induction of heat shock proteins and trehalose, which together confer thermotolerance in Saccharomyces cerevisiae
-
9418850
-
Lee DH, Goldberg AL, Proteasome inhibitors cause induction of heat shock proteins and trehalose, which together confer thermotolerance in Saccharomyces cerevisiae. Mol Cell Biol. 1998;18(1):30–8. 9418850
-
(1998)
Mol Cell Biol
, vol.18
, Issue.1
, pp. 30-38
-
-
Lee, D.H.1
Goldberg, A.L.2
-
48
-
-
84862991002
-
Stress and aging induce distinct polyQ protein aggregation states
-
22645345
-
Moronetti Mazzeo LE, Dersh D, Boccitto M, Kalb RG, Lamitina T, Stress and aging induce distinct polyQ protein aggregation states. Proc Natl Acad Sci U S A. 2012;109(26):10587–92. doi: 10.1073/pnas.110876610922645345
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, Issue.26
, pp. 10587-10592
-
-
Moronetti Mazzeo, L.E.1
Dersh, D.2
Boccitto, M.3
Kalb, R.G.4
Lamitina, T.5
-
49
-
-
84866297918
-
Delaying aging and the aging-associated decline in protein homeostasis by inhibition of tryptophan degradation
-
22927396
-
van der Goot AT, Zhu W, Vazquez-Manrique RP, Seinstra RI, Dettmer K, Michels H, et al. Delaying aging and the aging-associated decline in protein homeostasis by inhibition of tryptophan degradation. Proc Natl Acad Sci U S A. 2012;109(37):14912–7. doi: 10.1073/pnas.120308310922927396
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, Issue.37
, pp. 14912-14917
-
-
van der Goot, A.T.1
Zhu, W.2
Vazquez-Manrique, R.P.3
Seinstra, R.I.4
Dettmer, K.5
Michels, H.6
-
50
-
-
0042626242
-
SKN-1 links C. elegans mesendodermal specification to a conserved oxidative stress response
-
12869585
-
An JH, Blackwell TK, SKN-1 links C. elegans mesendodermal specification to a conserved oxidative stress response. Genes and Development. 2003;17(15):1882–93. 12869585
-
(2003)
Genes and Development
, vol.17
, Issue.15
, pp. 1882-1893
-
-
An, J.H.1
Blackwell, T.K.2
-
51
-
-
0032127939
-
Negative regulation of the heat shock transcriptional response by HSBP1
-
9649501, .;():–. Epub 1998/07/03
-
Satyal SH, Chen D, Fox SG, Kramer JM, Morimoto RI, Negative regulation of the heat shock transcriptional response by HSBP1. Genes Dev. 1998;12(13):1962–74. Epub 1998/07/03. 9649501
-
(1998)
Genes Dev
, vol.12
, Issue.13
, pp. 1962-1974
-
-
Satyal, S.H.1
Chen, D.2
Fox, S.G.3
Kramer, J.M.4
Morimoto, R.I.5
-
52
-
-
0032053198
-
Identification of stress-responsive genes in Caenorhabditis elegans using RT-PCR differential display
-
9512531
-
Tawe WN, Eschbach ML, Walter RD, Henkle-Duhrsen K, Identification of stress-responsive genes in Caenorhabditis elegans using RT-PCR differential display. Nucleic Acids Res. 1998;26(7):1621–7. 9512531
-
(1998)
Nucleic Acids Res
, vol.26
, Issue.7
, pp. 1621-1627
-
-
Tawe, W.N.1
Eschbach, M.L.2
Walter, R.D.3
Henkle-Duhrsen, K.4
-
53
-
-
0036279460
-
Reporter transgenes for study of oxidant stress in Caenorhabditis elegans
-
12078522, .;:–
-
Link CD, Johnson CJ, Reporter transgenes for study of oxidant stress in Caenorhabditis elegans. Methods Enzymol. 2002;353:497–505. 12078522
-
(2002)
Methods Enzymol
, vol.353
, pp. 497-505
-
-
Link, C.D.1
Johnson, C.J.2
-
54
-
-
0032706619
-
Direct observation of stress response in Caenorhabditis elegans using a reporter transgene
-
.;():–
-
Link CD, Cypser JR, Johnson CJ, Johnson TE, Direct observation of stress response in Caenorhabditis elegans using a reporter transgene. Cell StressChaperones. 1999;4(4):235–42.
-
(1999)
Cell StressChaperones
, vol.4
, Issue.4
, pp. 235-242
-
-
Link, C.D.1
Cypser, J.R.2
Johnson, C.J.3
Johnson, T.E.4
-
55
-
-
84876869300
-
Identification of a tissue-selective heat shock response regulatory network
-
23637632, .;():
-
Guisbert E, Czyz DM, Richter K, McMullen PD, Morimoto RI, Identification of a tissue-selective heat shock response regulatory network. PLoS Genet. 2013;9(4):e1003466. doi: 10.1371/journal.pgen.100346623637632
-
(2013)
PLoS Genet
, vol.9
, Issue.4
, pp. e1003466
-
-
Guisbert, E.1
Czyz, D.M.2
Richter, K.3
McMullen, P.D.4
Morimoto, R.I.5
-
56
-
-
84866182143
-
RPN-6 determines C. elegans longevity under proteotoxic stress conditions
-
22922647
-
Vilchez D, Morantte I, Liu Z, Douglas PM, Merkwirth C, Rodrigues AP, et al. RPN-6 determines C. elegans longevity under proteotoxic stress conditions. Nature. 2012;489(7415):263–8. doi: 10.1038/nature1131522922647
-
(2012)
Nature
, vol.489
, Issue.7415
, pp. 263-268
-
-
Vilchez, D.1
Morantte, I.2
Liu, Z.3
Douglas, P.M.4
Merkwirth, C.5
Rodrigues, A.P.6
-
57
-
-
84863181604
-
Decreased proteasomal activity causes age-related phenotypes and promotes the development of metabolic abnormalities
-
22210478
-
Tomaru U, Takahashi S, Ishizu A, Miyatake Y, Gohda A, Suzuki S, et al. Decreased proteasomal activity causes age-related phenotypes and promotes the development of metabolic abnormalities. The American journal of pathology. 2012;180(3):963–72. doi: 10.1016/j.ajpath.2011.11.01222210478
-
(2012)
The American journal of pathology
, vol.180
, Issue.3
, pp. 963-972
-
-
Tomaru, U.1
Takahashi, S.2
Ishizu, A.3
Miyatake, Y.4
Gohda, A.5
Suzuki, S.6
-
58
-
-
84904990897
-
Proteasome-Mediated Processing of Nrf1 Is Essential for Coordinate Induction of All Proteasome Subunits and p97
-
Sha Z, Goldberg AL, Proteasome-Mediated Processing of Nrf1 Is Essential for Coordinate Induction of All Proteasome Subunits and p97. Curr Biol. 2014.
-
(2014)
Curr Biol
-
-
Sha, Z.1
Goldberg, A.L.2
-
59
-
-
84856557856
-
Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets
-
21940837
-
Xiong Q, Ancona N, Hauser ER, Mukherjee S, Furey TS, Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets. Genome Res. 2012;22(2):386–97. doi: 10.1101/gr.124370.11121940837
-
(2012)
Genome Res
, vol.22
, Issue.2
, pp. 386-397
-
-
Xiong, Q.1
Ancona, N.2
Hauser, E.R.3
Mukherjee, S.4
Furey, T.S.5
-
60
-
-
66149175591
-
Oxidative stress and longevity in Caenorhabditis elegans as mediated by SKN-1
-
19627265, .;():–. Epub 2009/07/25
-
Park SK, Tedesco PM, Johnson TE, Oxidative stress and longevity in Caenorhabditis elegans as mediated by SKN-1. Aging Cell. 2009;8(3):258–69. Epub 2009/07/25. doi: 10.1111/j.1474-9726.2009.00473.x19627265
-
(2009)
Aging Cell
, vol.8
, Issue.3
, pp. 258-269
-
-
Park, S.K.1
Tedesco, P.M.2
Johnson, T.E.3
-
61
-
-
44849125102
-
C. elegans dss-1 is functionally conserved and required for oogenesis and larval growth
-
18471277
-
Pispa J, Palmen S, Holmberg CI, Jantti J, C. elegans dss-1 is functionally conserved and required for oogenesis and larval growth. BMC Dev Biol. 2008;8:51. doi: 10.1186/1471-213X-8-5118471277
-
(2008)
BMC Dev Biol
, vol.8
, pp. 51
-
-
Pispa, J.1
Palmen, S.2
Holmberg, C.I.3
Jantti, J.4
-
62
-
-
0027165193
-
Cloning of a cDNA which encodes a novel ubiquitin-like protein
-
8395831
-
Kumar S, Yoshida Y, Noda M, Cloning of a cDNA which encodes a novel ubiquitin-like protein. Biochem Biophys Res Commun. 1993;195(1):393–9. 8395831
-
(1993)
Biochem Biophys Res Commun
, vol.195
, Issue.1
, pp. 393-399
-
-
Kumar, S.1
Yoshida, Y.2
Noda, M.3
-
63
-
-
0030695339
-
Characterization of NEDD8, a developmentally down-regulated ubiquitin-like protein
-
9353319
-
Kamitani T, Kito K, Nguyen HP, Yeh ET, Characterization of NEDD8, a developmentally down-regulated ubiquitin-like protein. J Biol Chem. 1997;272(45):28557–62. 9353319
-
(1997)
J Biol Chem
, vol.272
, Issue.45
, pp. 28557-28562
-
-
Kamitani, T.1
Kito, K.2
Nguyen, H.P.3
Yeh, E.T.4
-
64
-
-
0032146145
-
A new NEDD8-ligating system for cullin-4A
-
9694792
-
Osaka F, Kawasaki H, Aida N, Saeki M, Chiba T, Kawashima S, et al. A new NEDD8-ligating system for cullin-4A. Genes Dev. 1998;12(15):2263–8. 9694792
-
(1998)
Genes Dev
, vol.12
, Issue.15
, pp. 2263-2268
-
-
Osaka, F.1
Kawasaki, H.2
Aida, N.3
Saeki, M.4
Chiba, T.5
Kawashima, S.6
-
65
-
-
17844411190
-
NEDD8 recruits E2-ubiquitin to SCF E3 ligase
-
11483504
-
Kawakami T, Chiba T, Suzuki T, Iwai K, Yamanaka K, Minato N, et al. NEDD8 recruits E2-ubiquitin to SCF E3 ligase. EMBO J. 2001;20(15):4003–12. 11483504
-
(2001)
EMBO J
, vol.20
, Issue.15
, pp. 4003-4012
-
-
Kawakami, T.1
Chiba, T.2
Suzuki, T.3
Iwai, K.4
Yamanaka, K.5
Minato, N.6
-
66
-
-
82455179484
-
Systematic and quantitative assessment of the ubiquitin-modified proteome
-
21906983
-
Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, et al. Systematic and quantitative assessment of the ubiquitin-modified proteome. Mol Cell. 2011;44(2):325–40. doi: 10.1016/j.molcel.2011.08.02521906983
-
(2011)
Mol Cell
, vol.44
, Issue.2
, pp. 325-340
-
-
Kim, W.1
Bennett, E.J.2
Huttlin, E.L.3
Guo, A.4
Li, J.5
Possemato, A.6
-
67
-
-
84862908377
-
Changes in the ratio of free NEDD8 to ubiquitin triggers NEDDylation by ubiquitin enzymes
-
22004789
-
Hjerpe R, Thomas Y, Chen J, Zemla A, Curran S, Shpiro N, et al. Changes in the ratio of free NEDD8 to ubiquitin triggers NEDDylation by ubiquitin enzymes. Biochem J. 2012;441(3):927–36. doi: 10.1042/BJ2011167122004789
-
(2012)
Biochem J
, vol.441
, Issue.3
, pp. 927-936
-
-
Hjerpe, R.1
Thomas, Y.2
Chen, J.3
Zemla, A.4
Curran, S.5
Shpiro, N.6
-
68
-
-
0038325675
-
Mouse Apg16L, a novel WD-repeat protein, targets to the autophagic isolation membrane with the Apg12-Apg5 conjugate
-
12665549
-
Mizushima N, Kuma A, Kobayashi Y, Yamamoto A, Matsubae M, Takao T, et al. Mouse Apg16L, a novel WD-repeat protein, targets to the autophagic isolation membrane with the Apg12-Apg5 conjugate. J Cell Sci. 2003;116(Pt 9):1679–88. 12665549
-
(2003)
J Cell Sci
, vol.116
, pp. 1679-1688
-
-
Mizushima, N.1
Kuma, A.2
Kobayashi, Y.3
Yamamoto, A.4
Matsubae, M.5
Takao, T.6
-
69
-
-
84890849916
-
The two C. elegans ATG-16 homologs have partially redundant functions in the basal autophagy pathway
-
24185444
-
Zhang H, Wu F, Wang X, Du H, Wang X, Zhang H, The two C. elegans ATG-16 homologs have partially redundant functions in the basal autophagy pathway. Autophagy. 2013;9(12):1965–74. 24185444
-
(2013)
Autophagy
, vol.9
, Issue.12
, pp. 1965-1974
-
-
Zhang, H.1
Wu, F.2
Wang, X.3
Du, H.4
Wang, X.5
Zhang, H.6
-
70
-
-
84887132374
-
Arginine methylation modulates autophagic degradation of PGL granules in C. elegans
-
24140420
-
Li S, Yang P, Tian E, Zhang H, Arginine methylation modulates autophagic degradation of PGL granules in C. elegans. Mol Cell. 2013;52(3):421–33. doi: 10.1016/j.molcel.2013.09.01424140420
-
(2013)
Mol Cell
, vol.52
, Issue.3
, pp. 421-433
-
-
Li, S.1
Yang, P.2
Tian, E.3
Zhang, H.4
-
71
-
-
12344299679
-
Bm-CPI-2, a cystatin from Brugia malayi nematode parasites, differs from Caenorhabditis elegans cystatins in a specific site mediating inhibition of the antigen-processing enzyme AEP
-
15664654
-
Murray J, Manoury B, Balic A, Watts C, Maizels RM, Bm-CPI-2, a cystatin from Brugia malayi nematode parasites, differs from Caenorhabditis elegans cystatins in a specific site mediating inhibition of the antigen-processing enzyme AEP. Molecular and biochemical parasitology. 2005;139(2):197–203. 15664654
-
(2005)
Molecular and biochemical parasitology
, vol.139
, Issue.2
, pp. 197-203
-
-
Murray, J.1
Manoury, B.2
Balic, A.3
Watts, C.4
Maizels, R.M.5
-
72
-
-
78650716872
-
Reversal of autophagy dysfunction in the TgCRND8 mouse model of Alzheimer's disease ameliorates amyloid pathologies and memory deficits
-
..;():–
-
Yang DS, Stavrides P, Mohan PS, Kaushik S, Kumar A, Ohno M, et al. Reversal of autophagy dysfunction in the TgCRND8 mouse model of Alzheimer's disease ameliorates amyloid pathologies and memory deficits. Brain: a journal of neurology. 2011;134(Pt 1):258–77.
-
(2011)
Brain: a journal of neurology
, vol.134
, pp. 258-277
-
-
Yang, D.S.1
Stavrides, P.2
Mohan, P.S.3
Kaushik, S.4
Kumar, A.5
Ohno, M.6
-
73
-
-
25844490465
-
The C. elegans p38 MAPK pathway regulates nuclear localization of the transcription factor SKN-1 in oxidative stress response
-
16166371, ..;():–. Epub 2005/09/17
-
Inoue H, Hisamoto N, An JH, Oliveira RP, Nishida E, Blackwell TK, et al. The C. elegans p38 MAPK pathway regulates nuclear localization of the transcription factor SKN-1 in oxidative stress response. Genes Dev. 2005;19(19):2278–83. Epub 2005/09/17. 16166371
-
(2005)
Genes Dev
, vol.19
, Issue.19
, pp. 2278-2283
-
-
Inoue, H.1
Hisamoto, N.2
An, J.H.3
Oliveira, R.P.4
Nishida, E.5
Blackwell, T.K.6
-
74
-
-
40449100030
-
Direct multiplexed measurement of gene expression with color-coded probe pairs
-
18278033, ..;():–. Epub 2008/02/19
-
Geiss GK, Bumgarner RE, Birditt B, Dahl T, Dowidar N, Dunaway DL, et al. Direct multiplexed measurement of gene expression with color-coded probe pairs. Nat Biotechnol. 2008;26(3):317–25. Epub 2008/02/19. doi: 10.1038/nbt138518278033
-
(2008)
Nat Biotechnol
, vol.26
, Issue.3
, pp. 317-325
-
-
Geiss, G.K.1
Bumgarner, R.E.2
Birditt, B.3
Dahl, T.4
Dowidar, N.5
Dunaway, D.L.6
-
75
-
-
66349105688
-
The WD40 repeat protein WDR-23 functions with the CUL4/DDB1 ubiquitin ligase to regulate nuclear abundance and activity of SKN-1 in Caenorhabditis elegans
-
19273594, .;():–. Epub 2009/03/11
-
Choe KP, Przybysz AJ, Strange K, The WD40 repeat protein WDR-23 functions with the CUL4/DDB1 ubiquitin ligase to regulate nuclear abundance and activity of SKN-1 in Caenorhabditis elegans. Mol Cell Biol. 2009;29(10):2704–15. Epub 2009/03/11. doi: 10.1128/MCB.01811-0819273594
-
(2009)
Mol Cell Biol
, vol.29
, Issue.10
, pp. 2704-2715
-
-
Choe, K.P.1
Przybysz, A.J.2
Strange, K.3
-
76
-
-
0032526161
-
The GATA-factor elt-2 is essential for formation of the Caenorhabditis elegans intestine
-
.;():–
-
Fukushige T, Hawkins MG, McGhee JD, The GATA-factor elt-2 is essential for formation of the Caenorhabditis elegans intestine. DevBiol. 1998;198(2):286–302.
-
(1998)
DevBiol
, vol.198
, Issue.2
, pp. 286-302
-
-
Fukushige, T.1
Hawkins, M.G.2
McGhee, J.D.3
-
77
-
-
60549094760
-
ELT-2 is the predominant transcription factor controlling differentiation and function of the C. elegans intestine, from embryo to adult
-
19111532, ..;():–. Epub 2008/12/30
-
McGhee JD, Fukushige T, Krause MW, Minnema SE, Goszczynski B, Gaudet J, et al. ELT-2 is the predominant transcription factor controlling differentiation and function of the C. elegans intestine, from embryo to adult. Dev Biol. 2009;327(2):551–65. Epub 2008/12/30. doi: 10.1016/j.ydbio.2008.11.03419111532
-
(2009)
Dev Biol
, vol.327
, Issue.2
, pp. 551-565
-
-
McGhee, J.D.1
Fukushige, T.2
Krause, M.W.3
Minnema, S.E.4
Goszczynski, B.5
Gaudet, J.6
-
78
-
-
33846818720
-
The ELT-2 GATA-factor and the global regulation of transcription in the C. elegans intestine
-
17113066, ..;():–. Epub 2006/11/23
-
McGhee JD, Sleumer MC, Bilenky M, Wong K, McKay SJ, Goszczynski B, et al. The ELT-2 GATA-factor and the global regulation of transcription in the C. elegans intestine. Dev Biol. 2007;302(2):627–45. Epub 2006/11/23. 17113066
-
(2007)
Dev Biol
, vol.302
, Issue.2
, pp. 627-645
-
-
McGhee, J.D.1
Sleumer, M.C.2
Bilenky, M.3
Wong, K.4
McKay, S.J.5
Goszczynski, B.6
-
79
-
-
54949117914
-
GATA transcription factor required for immunity to bacterial and fungal pathogens
-
17183709, .;:. Epub 2006/12/22
-
Kerry S, TeKippe M, Gaddis NC, Aballay A, GATA transcription factor required for immunity to bacterial and fungal pathogens. PLoS ONE. 2006;1:e77. Epub 2006/12/22. 17183709
-
(2006)
PLoS ONE
, vol.1
, pp. e77
-
-
Kerry, S.1
TeKippe, M.2
Gaddis, N.C.3
Aballay, A.4
-
80
-
-
0033569919
-
Regulation of metallothionein gene transcription. Identification of upstream regulatory elements and transcription factors responsible for cell-specific expression of the metallothionein genes from Caenorhabditis elegans
-
10514435, .;():–. Epub 1999/10/09
-
Moilanen LH, Fukushige T, Freedman JH, Regulation of metallothionein gene transcription. Identification of upstream regulatory elements and transcription factors responsible for cell-specific expression of the metallothionein genes from Caenorhabditis elegans. J Biol Chem. 1999;274(42):29655–65. Epub 1999/10/09. 10514435
-
(1999)
J Biol Chem
, vol.274
, Issue.42
, pp. 29655-29665
-
-
Moilanen, L.H.1
Fukushige, T.2
Freedman, J.H.3
-
81
-
-
33749014641
-
A conserved role for a GATA transcription factor in regulating epithelial innate immune responses
-
16968778, .;():–. Epub 2006/09/14
-
Shapira M, Hamlin BJ, Rong J, Chen K, Ronen M, Tan MW, A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Proc Natl Acad Sci U S A. 2006;103(38):14086–91. Epub 2006/09/14. 16968778
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, Issue.38
, pp. 14086-14091
-
-
Shapira, M.1
Hamlin, B.J.2
Rong, J.3
Chen, K.4
Ronen, M.5
Tan, M.W.6
-
82
-
-
84872143888
-
Direct and indirect gene regulation by a life-extending FOXO protein in C. elegans: roles for GATA factors and lipid gene regulators
-
23312285
-
Zhang P, Judy M, Lee SJ, Kenyon C, Direct and indirect gene regulation by a life-extending FOXO protein in C. elegans: roles for GATA factors and lipid gene regulators. Cell Metab. 2013;17(1):85–100. doi: 10.1016/j.cmet.2012.12.01323312285
-
(2013)
Cell Metab
, vol.17
, Issue.1
, pp. 85-100
-
-
Zhang, P.1
Judy, M.2
Lee, S.J.3
Kenyon, C.4
-
83
-
-
0038493550
-
Characterization of chronic low-level proteasome inhibition on neural homeostasis
-
12871590
-
Ding Q, Dimayuga E, Martin S, Bruce-Keller AJ, Nukala V, Cuervo AM, et al. Characterization of chronic low-level proteasome inhibition on neural homeostasis. J Neurochem. 2003;86(2):489–97. 12871590
-
(2003)
J Neurochem
, vol.86
, Issue.2
, pp. 489-497
-
-
Ding, Q.1
Dimayuga, E.2
Martin, S.3
Bruce-Keller, A.J.4
Nukala, V.5
Cuervo, A.M.6
-
84
-
-
34250183177
-
HDAC6 rescues neurodegeneration and provides an essential link between autophagy and the UPS
-
17568747
-
Pandey UB, Nie Z, Batlevi Y, McCray BA, Ritson GP, Nedelsky NB, et al. HDAC6 rescues neurodegeneration and provides an essential link between autophagy and the UPS. Nature. 2007;447(7146):859–63. 17568747
-
(2007)
Nature
, vol.447
, Issue.7146
, pp. 859-863
-
-
Pandey, U.B.1
Nie, Z.2
Batlevi, Y.3
McCray, B.A.4
Ritson, G.P.5
Nedelsky, N.B.6
-
85
-
-
0042691506
-
Autophagy genes are essential for dauer development and life-span extension in C. elegans
-
12958363
-
Melendez A, Talloczy Z, Seaman M, Eskelinen EL, Hall DH, Levine B, Autophagy genes are essential for dauer development and life-span extension in C. elegans. Science. 2003;301(5638):1387–91. 12958363
-
(2003)
Science
, vol.301
, Issue.5638
, pp. 1387-1391
-
-
Melendez, A.1
Talloczy, Z.2
Seaman, M.3
Eskelinen, E.L.4
Hall, D.H.5
Levine, B.6
-
86
-
-
84883063789
-
The TFEB orthologue HLH-30 regulates autophagy and modulates longevity in Caenorhabditis elegans
-
23925298, ..;:
-
Lapierre LR, De Magalhaes Filho CD, McQuary PR, Chu CC, Visvikis O, Chang JT, et al. The TFEB orthologue HLH-30 regulates autophagy and modulates longevity in Caenorhabditis elegans. Nature communications. 2013;4:2267. doi: 10.1038/ncomms326723925298
-
(2013)
Nature communications
, vol.4
, pp. 2267
-
-
Lapierre, L.R.1
De Magalhaes Filho, C.D.2
McQuary, P.R.3
Chu, C.C.4
Visvikis, O.5
Chang, J.T.6
-
87
-
-
84923340794
-
Guidelines for monitoring autophagy in Caenorhabditis elegans
-
..:0
-
Zhang H, Chang JT, Guo B, Hansen M, Jia K, Kovacs AL, et al. Guidelines for monitoring autophagy in Caenorhabditis elegans. Autophagy. 2015:0.
-
(2015)
Autophagy
-
-
Zhang, H.1
Chang, J.T.2
Guo, B.3
Hansen, M.4
Jia, K.5
Kovacs, A.L.6
-
88
-
-
67650249774
-
epg-1 functions in autophagy-regulated processes and may encode a highly divergent Atg13 homolog in C. elegans
-
19377305
-
Tian E, Wang F, Han J, Zhang H, epg-1 functions in autophagy-regulated processes and may encode a highly divergent Atg13 homolog in C. elegans. Autophagy. 2009;5(5):608–15. 19377305
-
(2009)
Autophagy
, vol.5
, Issue.5
, pp. 608-615
-
-
Tian, E.1
Wang, F.2
Han, J.3
Zhang, H.4
-
89
-
-
33846918203
-
New assay using fluorogenic substrates and immunofluorescence staining to measure cysteine cathepsin activity in live cell subpopulations
-
.;():–
-
Creasy BM, Hartmann CB, White FK, McCoy KL, New assay using fluorogenic substrates and immunofluorescence staining to measure cysteine cathepsin activity in live cell subpopulations. Cytometry Part A: the journal of the International Society for Analytical Cytology. 2007;71(2):114–23.
-
(2007)
Cytometry Part A: the journal of the International Society for Analytical Cytology
, vol.71
, Issue.2
, pp. 114-123
-
-
Creasy, B.M.1
Hartmann, C.B.2
White, F.K.3
McCoy, K.L.4
-
90
-
-
84887610189
-
Statistical tests for measures of colocalization in biological microscopy
-
24117417
-
McDonald JH, Dunn KW, Statistical tests for measures of colocalization in biological microscopy. J Microsc. 2013;252(3):295–302. doi: 10.1111/jmi.1209324117417
-
(2013)
J Microsc
, vol.252
, Issue.3
, pp. 295-302
-
-
McDonald, J.H.1
Dunn, K.W.2
-
91
-
-
21844467751
-
The vacuolar H+ -ATPase mediates intracellular acidification required for neurodegeneration in C. elegans
-
16005300
-
Syntichaki P, Samara C, Tavernarakis N, The vacuolar H+ -ATPase mediates intracellular acidification required for neurodegeneration in C. elegans. Curr Biol. 2005;15(13):1249–54. 16005300
-
(2005)
Curr Biol
, vol.15
, Issue.13
, pp. 1249-1254
-
-
Syntichaki, P.1
Samara, C.2
Tavernarakis, N.3
-
92
-
-
0017082272
-
Ammonia inhibition of protein degradation in isolated rat hepatocytes. Quantitative ultrastructural alterations in the lysosomal system
-
939253
-
Seglen PO, Reith A, Ammonia inhibition of protein degradation in isolated rat hepatocytes. Quantitative ultrastructural alterations in the lysosomal system. Experimental cell research. 1976;100(2):276–80. 939253
-
(1976)
Experimental cell research
, vol.100
, Issue.2
, pp. 276-280
-
-
Seglen, P.O.1
Reith, A.2
-
93
-
-
84937574462
-
Autophagic Degradation of the 26S Proteasome Is Mediated by the Dual ATG8/Ubiquitin Receptor RPN10 in Arabidopsis
-
26004230
-
Marshall RS, Li F, Gemperline DC, Book AJ, Vierstra RD, Autophagic Degradation of the 26S Proteasome Is Mediated by the Dual ATG8/Ubiquitin Receptor RPN10 in Arabidopsis. Mol Cell. 2015;58(6):1053–66. doi: 10.1016/j.molcel.2015.04.02326004230
-
(2015)
Mol Cell
, vol.58
, Issue.6
, pp. 1053-1066
-
-
Marshall, R.S.1
Li, F.2
Gemperline, D.C.3
Book, A.J.4
Vierstra, R.D.5
-
94
-
-
84884593127
-
Proteasomes activate aggresome disassembly and clearance by producing unanchored ubiquitin chains
-
24035499
-
Hao R, Nanduri P, Rao Y, Panichelli RS, Ito A, Yoshida M, et al. Proteasomes activate aggresome disassembly and clearance by producing unanchored ubiquitin chains. Mol Cell. 2013;51(6):819–28. doi: 10.1016/j.molcel.2013.08.01624035499
-
(2013)
Mol Cell
, vol.51
, Issue.6
, pp. 819-828
-
-
Hao, R.1
Nanduri, P.2
Rao, Y.3
Panichelli, R.S.4
Ito, A.5
Yoshida, M.6
-
95
-
-
84927139452
-
Chaperone-mediated 26S proteasome remodeling facilitates free K63 ubiquitin chain production and aggresome clearance
-
25713068
-
Nanduri P, Hao R, Fitzpatrick T, Yao TP, Chaperone-mediated 26S proteasome remodeling facilitates free K63 ubiquitin chain production and aggresome clearance. J Biol Chem. 2015;290(15):9455–64. doi: 10.1074/jbc.M114.62795025713068
-
(2015)
J Biol Chem
, vol.290
, Issue.15
, pp. 9455-9464
-
-
Nanduri, P.1
Hao, R.2
Fitzpatrick, T.3
Yao, T.P.4
-
96
-
-
84928963751
-
Widespread Proteome Remodeling and Aggregation in Aging C. elegans
-
25957690
-
Walther DM, Kasturi P, Zheng M, Pinkert S, Vecchi G, Ciryam P, et al. Widespread Proteome Remodeling and Aggregation in Aging C. elegans. Cell. 2015;161(4):919–32. doi: 10.1016/j.cell.2015.03.03225957690
-
(2015)
Cell
, vol.161
, Issue.4
, pp. 919-932
-
-
Walther, D.M.1
Kasturi, P.2
Zheng, M.3
Pinkert, S.4
Vecchi, G.5
Ciryam, P.6
-
97
-
-
84862736551
-
Degradation of damaged proteins: the main function of the 20S proteasome
-
22727423, .;:–
-
Pickering AM, Davies KJ, Degradation of damaged proteins: the main function of the 20S proteasome. Progress in molecular biology and translational science. 2012;109:227–48. doi: 10.1016/B978-0-12-397863-9.00006-722727423
-
(2012)
Progress in molecular biology and translational science
, vol.109
, pp. 227-248
-
-
Pickering, A.M.1
Davies, K.J.2
-
98
-
-
84937412433
-
20S proteasome activation promotes life span extension and resistance to proteotoxicity in Caenorhabditis elegans
-
Chondrogianni N, Georgila K, Kourtis N, Tavernarakis N, Gonos ES, 20S proteasome activation promotes life span extension and resistance to proteotoxicity in Caenorhabditis elegans. FASEB journal: official publication of the Federation of American Societies for Experimental Biology. 2014.
-
(2014)
FASEB journal: official publication of the Federation of American Societies for Experimental Biology
-
-
Chondrogianni, N.1
Georgila, K.2
Kourtis, N.3
Tavernarakis, N.4
Gonos, E.S.5
-
99
-
-
0041706156
-
A proteomics approach to understanding protein ubiquitination
-
12872131
-
Peng J, Schwartz D, Elias JE, Thoreen CC, Cheng D, Marsischky G, et al. A proteomics approach to understanding protein ubiquitination. Nat Biotechnol. 2003;21(8):921–6. 12872131
-
(2003)
Nat Biotechnol
, vol.21
, Issue.8
, pp. 921-926
-
-
Peng, J.1
Schwartz, D.2
Elias, J.E.3
Thoreen, C.C.4
Cheng, D.5
Marsischky, G.6
-
100
-
-
78651225388
-
Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling
-
20639865
-
Xu G, Paige JS, Jaffrey SR, Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling. Nat Biotechnol. 2010;28(8):868–73. doi: 10.1038/nbt.165420639865
-
(2010)
Nat Biotechnol
, vol.28
, Issue.8
, pp. 868-873
-
-
Xu, G.1
Paige, J.S.2
Jaffrey, S.R.3
-
101
-
-
0030898710
-
Proteasome inhibition leads to a heat-shock response, induction of endoplasmic reticulum chaperones, and thermotolerance
-
9083035
-
Bush KT, Goldberg AL, Nigam SK, Proteasome inhibition leads to a heat-shock response, induction of endoplasmic reticulum chaperones, and thermotolerance. J Biol Chem. 1997;272(14):9086–92. 9083035
-
(1997)
J Biol Chem
, vol.272
, Issue.14
, pp. 9086-9092
-
-
Bush, K.T.1
Goldberg, A.L.2
Nigam, S.K.3
-
102
-
-
0031841818
-
Heat shock response and protein degradation: regulation of HSF2 by the ubiquitin-proteasome pathway
-
9710593
-
Mathew A, Mathur SK, Morimoto RI, Heat shock response and protein degradation: regulation of HSF2 by the ubiquitin-proteasome pathway. Mol Cell Biol. 1998;18(9):5091–8. 9710593
-
(1998)
Mol Cell Biol
, vol.18
, Issue.9
, pp. 5091-5098
-
-
Mathew, A.1
Mathur, S.K.2
Morimoto, R.I.3
-
103
-
-
13244258435
-
Global impairment of the ubiquitin-proteasome system by nuclear or cytoplasmic protein aggregates precedes inclusion body formation
-
15694337
-
Bennett EJ, Bence NF, Jayakumar R, Kopito RR, Global impairment of the ubiquitin-proteasome system by nuclear or cytoplasmic protein aggregates precedes inclusion body formation. Mol Cell. 2005;17(3):351–65. 15694337
-
(2005)
Mol Cell
, vol.17
, Issue.3
, pp. 351-365
-
-
Bennett, E.J.1
Bence, N.F.2
Jayakumar, R.3
Kopito, R.R.4
-
104
-
-
28844475400
-
HDAC6 and microtubules are required for autophagic degradation of aggregated huntingtin
-
16192271
-
Iwata A, Riley BE, Johnston JA, Kopito RR, HDAC6 and microtubules are required for autophagic degradation of aggregated huntingtin. J Biol Chem. 2005;280(48):40282–92. 16192271
-
(2005)
J Biol Chem
, vol.280
, Issue.48
, pp. 40282-40292
-
-
Iwata, A.1
Riley, B.E.2
Johnston, J.A.3
Kopito, R.R.4
-
105
-
-
84883764681
-
Burkholderia pseudomallei suppresses Caenorhabditis elegans immunity by specific degradation of a GATA transcription factor
-
23980181
-
Lee SH, Wong RR, Chin CY, Lim TY, Eng SA, Kong C, et al. Burkholderia pseudomallei suppresses Caenorhabditis elegans immunity by specific degradation of a GATA transcription factor. Proc Natl Acad Sci U S A. 2013;110(37):15067–72. doi: 10.1073/pnas.131172511023980181
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, Issue.37
, pp. 15067-15072
-
-
Lee, S.H.1
Wong, R.R.2
Chin, C.Y.3
Lim, T.Y.4
Eng, S.A.5
Kong, C.6
-
106
-
-
21644438110
-
Rapid turnover of GATA-2 via ubiquitin-proteasome protein degradation pathway
-
.;():–
-
Minegishi N, Suzuki N, Kawatani Y, Shimizu R, Yamamoto M, Rapid turnover of GATA-2 via ubiquitin-proteasome protein degradation pathway. Genes to cells: devoted to molecular & cellular mechanisms. 2005;10(7):693–704.
-
(2005)
Genes to cells: devoted to molecular & cellular mechanisms
, vol.10
, Issue.7
, pp. 693-704
-
-
Minegishi, N.1
Suzuki, N.2
Kawatani, Y.3
Shimizu, R.4
Yamamoto, M.5
-
107
-
-
38349178680
-
Differential GATA factor stabilities: implications for chromatin occupancy by structurally similar transcription factors
-
18154321
-
Lurie LJ, Boyer ME, Grass JA, Bresnick EH, Differential GATA factor stabilities: implications for chromatin occupancy by structurally similar transcription factors. Biochemistry. 2008;47(3):859–69. 18154321
-
(2008)
Biochemistry
, vol.47
, Issue.3
, pp. 859-869
-
-
Lurie, L.J.1
Boyer, M.E.2
Grass, J.A.3
Bresnick, E.H.4
-
108
-
-
77955877483
-
HSP27 controls GATA-1 protein level during erythroid cell differentiation
-
20410505
-
de Thonel A, Vandekerckhove J, Lanneau D, Selvakumar S, Courtois G, Hazoume A, et al. HSP27 controls GATA-1 protein level during erythroid cell differentiation. Blood. 2010;116(1):85–96. doi: 10.1182/blood-2009-09-24177820410505
-
(2010)
Blood
, vol.116
, Issue.1
, pp. 85-96
-
-
de Thonel, A.1
Vandekerckhove, J.2
Lanneau, D.3
Selvakumar, S.4
Courtois, G.5
Hazoume, A.6
-
109
-
-
59449095881
-
Genetic evidence linking age-dependent attenuation of the 26S proteasome with the aging process
-
19075009
-
Tonoki A, Kuranaga E, Tomioka T, Hamazaki J, Murata S, Tanaka K, et al. Genetic evidence linking age-dependent attenuation of the 26S proteasome with the aging process. Mol Cell Biol. 2009;29(4):1095–106. doi: 10.1128/MCB.01227-0819075009
-
(2009)
Mol Cell Biol
, vol.29
, Issue.4
, pp. 1095-1106
-
-
Tonoki, A.1
Kuranaga, E.2
Tomioka, T.3
Hamazaki, J.4
Murata, S.5
Tanaka, K.6
-
110
-
-
34548421950
-
Dual roles of autophagy in the survival of Caenorhabditis elegans during starvation
-
17785524
-
Kang C, You YJ, Avery L, Dual roles of autophagy in the survival of Caenorhabditis elegans during starvation. Genes and Development. 2007;21(17):2161–71. 17785524
-
(2007)
Genes and Development
, vol.21
, Issue.17
, pp. 2161-2171
-
-
Kang, C.1
You, Y.J.2
Avery, L.3
-
111
-
-
84899991081
-
Identification of a genetic interaction between the tumor suppressor EAF2 and the retinoblastoma protein (Rb) signaling pathway in C. elegans and prostate cancer cells
-
24727455
-
Cai L, Wang D, Fisher AL, Wang Z, Identification of a genetic interaction between the tumor suppressor EAF2 and the retinoblastoma protein (Rb) signaling pathway in C. elegans and prostate cancer cells. Biochem Biophys Res Commun. 2014;447(2):292–8. doi: 10.1016/j.bbrc.2014.03.13824727455
-
(2014)
Biochem Biophys Res Commun
, vol.447
, Issue.2
, pp. 292-298
-
-
Cai, L.1
Wang, D.2
Fisher, A.L.3
Wang, Z.4
-
112
-
-
0036678146
-
The threshold for polyglutamine-expansion protein aggregation and cellular toxicity is dynamic and influenced by aging in Caenorhabditis elegans
-
.;():–
-
Morley JF, Brignull HR, Weyers JJ, Morimoto RI, The threshold for polyglutamine-expansion protein aggregation and cellular toxicity is dynamic and influenced by aging in Caenorhabditis elegans. ProcNatlAcadSciUSA. 2002;99(16):10417–22.
-
(2002)
ProcNatlAcadSciUSA
, vol.99
, Issue.16
, pp. 10417-10422
-
-
Morley, J.F.1
Brignull, H.R.2
Weyers, J.J.3
Morimoto, R.I.4
-
113
-
-
34548690553
-
High-throughput in vivo analysis of gene expression in Caenorhabditis elegans
-
17850180, ..;():
-
Hunt-Newbury R, Viveiros R, Johnsen R, Mah A, Anastas D, Fang L, et al. High-throughput in vivo analysis of gene expression in Caenorhabditis elegans. PLoS Biol. 2007;5(9):e237. 17850180
-
(2007)
PLoS Biol
, vol.5
, Issue.9
, pp. e237
-
-
Hunt-Newbury, R.1
Viveiros, R.2
Johnsen, R.3
Mah, A.4
Anastas, D.5
Fang, L.6
-
114
-
-
0032693308
-
Direct visualization of the elt-2 gut-specific GATA factor binding to a target promoter inside the living Caenorhabditis elegans embryo
-
10518545, .;():–. Epub 1999/10/16
-
Fukushige T, Hendzel MJ, Bazett-Jones DP, McGhee JD, Direct visualization of the elt-2 gut-specific GATA factor binding to a target promoter inside the living Caenorhabditis elegans embryo. Proc Natl Acad Sci U S A. 1999;96(21):11883–8. Epub 1999/10/16. 10518545
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, Issue.21
, pp. 11883-11888
-
-
Fukushige, T.1
Hendzel, M.J.2
Bazett-Jones, D.P.3
McGhee, J.D.4
-
115
-
-
80055109279
-
Generation of transgenic C. elegans by biolistic transformation
-
.;(). Epub 2010/09/03
-
Hochbaum D, Ferguson AA, Fisher AL, Generation of transgenic C. elegans by biolistic transformation. J Vis Exp. 2010;(42). Epub 2010/09/03.
-
(2010)
J Vis Exp
, Issue.42
-
-
Hochbaum, D.1
Ferguson, A.A.2
Fisher, A.L.3
-
116
-
-
58649115776
-
A simplified, robust, and streamlined procedure for the production of C. elegans transgenes via recombineering
-
19116030, .;:. Epub 2009/01/01
-
Zhang Y, Nash L, Fisher AL, A simplified, robust, and streamlined procedure for the production of C. elegans transgenes via recombineering. BMC Dev Biol. 2008;8:119. Epub 2009/01/01. doi: 10.1186/1471-213X-8-11919116030
-
(2008)
BMC Dev Biol
, vol.8
, pp. 119
-
-
Zhang, Y.1
Nash, L.2
Fisher, A.L.3
-
117
-
-
0038725897
-
Genome-wide RNAi screening in Caenorhabditis elegans
-
12828945
-
Kamath RS, Ahringer J, Genome-wide RNAi screening in Caenorhabditis elegans. Methods. 2003;30(4):313–21. 12828945
-
(2003)
Methods
, vol.30
, Issue.4
, pp. 313-321
-
-
Kamath, R.S.1
Ahringer, J.2
-
118
-
-
37249032341
-
Multiple functions and dynamic activation of MPK-1 extracellular signal-regulated kinase signaling in Caenorhabditis elegans germline development
-
18073423
-
Lee MH, Ohmachi M, Arur S, Nayak S, Francis R, Church D, et al. Multiple functions and dynamic activation of MPK-1 extracellular signal-regulated kinase signaling in Caenorhabditis elegans germline development. Genetics. 2007;177(4):2039–62. 18073423
-
(2007)
Genetics
, vol.177
, Issue.4
, pp. 2039-2062
-
-
Lee, M.H.1
Ohmachi, M.2
Arur, S.3
Nayak, S.4
Francis, R.5
Church, D.6
-
119
-
-
84892753640
-
TATN-1 mutations reveal a novel role for tyrosine as a metabolic signal that influences developmental decisions and longevity in Caenorhabditis elegans
-
24385923, ..;():
-
Ferguson AA, Roy S, Kormanik KN, Kim Y, Dumas KJ, Ritov VB, et al. TATN-1 mutations reveal a novel role for tyrosine as a metabolic signal that influences developmental decisions and longevity in Caenorhabditis elegans. PLoS Genet. 2013;9(12):e1004020. doi: 10.1371/journal.pgen.100402024385923
-
(2013)
PLoS Genet
, vol.9
, Issue.12
, pp. e1004020
-
-
Ferguson, A.A.1
Roy, S.2
Kormanik, K.N.3
Kim, Y.4
Dumas, K.J.5
Ritov, V.B.6
-
121
-
-
84929703231
-
RNAi Interrogation of Dietary Modulation of Development, Metabolism, Behavior, and Aging in C. elegans
-
25959815
-
Xiao R, Chun L, Ronan EA, Friedman DI, Liu J, Xu XZ, RNAi Interrogation of Dietary Modulation of Development, Metabolism, Behavior, and Aging in C. elegans. Cell Rep. 2015;11(7):1123–33. doi: 10.1016/j.celrep.2015.04.02425959815
-
(2015)
Cell Rep
, vol.11
, Issue.7
, pp. 1123-1133
-
-
Xiao, R.1
Chun, L.2
Ronan, E.A.3
Friedman, D.I.4
Liu, J.5
Xu, X.Z.6
-
122
-
-
70350625466
-
Condition-adapted stress and longevity gene regulation by Caenorhabditis elegans SKN-1/Nrf
-
19575768, ..;():–. Epub 2009/07/07
-
Oliveira RP, Porter Abate J, Dilks K, Landis J, Ashraf J, Murphy CT, et al. Condition-adapted stress and longevity gene regulation by Caenorhabditis elegans SKN-1/Nrf. Aging Cell. 2009;8(5):524–41. Epub 2009/07/07. doi: 10.1111/j.1474-9726.2009.00501.x19575768
-
(2009)
Aging Cell
, vol.8
, Issue.5
, pp. 524-541
-
-
Oliveira, R.P.1
Porter Abate, J.2
Dilks, K.3
Landis, J.4
Ashraf, J.5
Murphy, C.T.6
-
123
-
-
39849104918
-
Selection and validation of a set of reliable reference genes for quantitative sod gene expression analysis in C. elegans
-
18211699
-
Hoogewijs D, Houthoofd K, Matthijssens F, Vandesompele J, Vanfleteren JR, Selection and validation of a set of reliable reference genes for quantitative sod gene expression analysis in C. elegans. BMC molecular biology. 2008;9:9. doi: 10.1186/1471-2199-9-918211699
-
(2008)
BMC molecular biology
, vol.9
, pp. 9
-
-
Hoogewijs, D.1
Houthoofd, K.2
Matthijssens, F.3
Vandesompele, J.4
Vanfleteren, J.R.5
-
124
-
-
79961123152
-
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
-
21816040
-
Li B, Dewey CN, RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics. 2011;12:323. doi: 10.1186/1471-2105-12-32321816040
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 323
-
-
Li, B.1
Dewey, C.N.2
-
125
-
-
77949481052
-
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
-
20167110
-
Bullard JH, Purdom E, Hansen KD, Dudoit S, Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC Bioinformatics. 2010;11:94. doi: 10.1186/1471-2105-11-9420167110
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 94
-
-
Bullard, J.H.1
Purdom, E.2
Hansen, K.D.3
Dudoit, S.4
-
126
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
19131956, .;():–. Epub 2009/01/10
-
Huang da W, Sherman BT, Lempicki RA, Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 2009;4(1):44–57. Epub 2009/01/10. doi: 10.1038/nprot.2008.21119131956
-
(2009)
Nat Protoc
, vol.4
, Issue.1
, pp. 44-57
-
-
Huang da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
127
-
-
84855471897
-
Lysosome-related organelles in intestinal cells are a zinc storage site in C. elegans
-
22225878
-
Roh HC, Collier S, Guthrie J, Robertson JD, Kornfeld K, Lysosome-related organelles in intestinal cells are a zinc storage site in C. elegans. Cell Metab. 2012;15(1):88–99. doi: 10.1016/j.cmet.2011.12.00322225878
-
(2012)
Cell Metab
, vol.15
, Issue.1
, pp. 88-99
-
-
Roh, H.C.1
Collier, S.2
Guthrie, J.3
Robertson, J.D.4
Kornfeld, K.5
|