-
1
-
-
84891102589
-
Mutational signatures: the patterns of somatic mutations hidden in cancer genomes
-
Alexandrov L.B., Stratton M.R. Mutational signatures: the patterns of somatic mutations hidden in cancer genomes. Curr. Opin. Genet. Dev. 2014, 24:52-60.
-
(2014)
Curr. Opin. Genet. Dev.
, vol.24
, pp. 52-60
-
-
Alexandrov, L.B.1
Stratton, M.R.2
-
2
-
-
0025748539
-
P53 mutation in hepatocellular carcinoma after aflatoxin exposure
-
Ozturk M. p53 mutation in hepatocellular carcinoma after aflatoxin exposure. Lancet 1991, 338:1356-1359.
-
(1991)
Lancet
, vol.338
, pp. 1356-1359
-
-
Ozturk, M.1
-
3
-
-
0025894713
-
P53 mutations in human cancers
-
Hollstein M., et al. p53 mutations in human cancers. Science 1991, 253:49-53.
-
(1991)
Science
, vol.253
, pp. 49-53
-
-
Hollstein, M.1
-
4
-
-
0037152628
-
Tobacco smoke carcinogens, DNA damage and p53 mutations in smoking-associated cancers
-
Pfeifer G.P., et al. Tobacco smoke carcinogens, DNA damage and p53 mutations in smoking-associated cancers. Oncogene 2002, 21:7435-7451.
-
(2002)
Oncogene
, vol.21
, pp. 7435-7451
-
-
Pfeifer, G.P.1
-
5
-
-
74449093973
-
A comprehensive catalogue of somatic mutations from a human cancer genome
-
Pleasance E.D., et al. A comprehensive catalogue of somatic mutations from a human cancer genome. Nature 2010, 463:191-196.
-
(2010)
Nature
, vol.463
, pp. 191-196
-
-
Pleasance, E.D.1
-
6
-
-
74449085934
-
A small-cell lung cancer genome with complex signatures of tobacco exposure
-
Pleasance E.D., et al. A small-cell lung cancer genome with complex signatures of tobacco exposure. Nature 2010, 463:184-190.
-
(2010)
Nature
, vol.463
, pp. 184-190
-
-
Pleasance, E.D.1
-
7
-
-
84886531465
-
Whole-genome sequencing analysis identifies a distinctive mutational spectrum in an arsenic-related lung tumor
-
Martinez V.D., et al. Whole-genome sequencing analysis identifies a distinctive mutational spectrum in an arsenic-related lung tumor. J. Thorac. Oncol. 2013, 8:1451-1455.
-
(2013)
J. Thorac. Oncol.
, vol.8
, pp. 1451-1455
-
-
Martinez, V.D.1
-
8
-
-
84882837534
-
Signatures of mutational processes in human cancer
-
Alexandrov L.B., et al. Signatures of mutational processes in human cancer. Nature 2013, 500:415-421.
-
(2013)
Nature
, vol.500
, pp. 415-421
-
-
Alexandrov, L.B.1
-
9
-
-
84873186179
-
Deciphering signatures of mutational processes operative in human cancer
-
Alexandrov L.B., et al. Deciphering signatures of mutational processes operative in human cancer. Cell Rep. 2013, 3:246-259.
-
(2013)
Cell Rep.
, vol.3
, pp. 246-259
-
-
Alexandrov, L.B.1
-
10
-
-
84878593111
-
Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity
-
Dulak A.M., et al. Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity. Nat. Genet. 2013, 45:478-486.
-
(2013)
Nat. Genet.
, vol.45
, pp. 478-486
-
-
Dulak, A.M.1
-
11
-
-
84861541343
-
Mutational processes molding the genomes of 21 breast cancers
-
Nik-Zainal S., et al. Mutational processes molding the genomes of 21 breast cancers. Cell 2012, 149:979-993.
-
(2012)
Cell
, vol.149
, pp. 979-993
-
-
Nik-Zainal, S.1
-
12
-
-
84899533639
-
Mutation signatures of carcinogen exposure: genome-wide detection and new opportunities for cancer prevention
-
Poon S.L., et al. Mutation signatures of carcinogen exposure: genome-wide detection and new opportunities for cancer prevention. Genome Med. 2014, 6:24.
-
(2014)
Genome Med.
, vol.6
, pp. 24
-
-
Poon, S.L.1
-
13
-
-
84925497848
-
Hypermutation in human cancer genomes: footprints and mechanisms
-
Roberts S.A., Gordenin D.A. Hypermutation in human cancer genomes: footprints and mechanisms. Nat. Rev. Cancer 2014, 14:786-800.
-
(2014)
Nat. Rev. Cancer
, vol.14
, pp. 786-800
-
-
Roberts, S.A.1
Gordenin, D.A.2
-
14
-
-
84861460657
-
Clustered mutations in yeast and in human cancers can arise from damaged long single-strand DNA regions
-
Roberts S.A., et al. Clustered mutations in yeast and in human cancers can arise from damaged long single-strand DNA regions. Mol. Cell 2012, 46:424-435.
-
(2012)
Mol. Cell
, vol.46
, pp. 424-435
-
-
Roberts, S.A.1
-
15
-
-
84883432724
-
An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers
-
Roberts S.A., et al. An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers. Nat. Genet. 2013, 45:970-976.
-
(2013)
Nat. Genet.
, vol.45
, pp. 970-976
-
-
Roberts, S.A.1
-
16
-
-
84879061509
-
DNA deaminases induce break-associated mutation showers with implication of APOBEC3B and 3A in breast cancer kataegis
-
Taylor B.J., et al. DNA deaminases induce break-associated mutation showers with implication of APOBEC3B and 3A in breast cancer kataegis. Elife 2013, 2:e00534.
-
(2013)
Elife
, vol.2
, pp. e00534
-
-
Taylor, B.J.1
-
17
-
-
84874188583
-
APOBEC3B is an enzymatic source of mutation in breast cancer
-
Burns M.B., et al. APOBEC3B is an enzymatic source of mutation in breast cancer. Nature 2013, 494:366-370.
-
(2013)
Nature
, vol.494
, pp. 366-370
-
-
Burns, M.B.1
-
18
-
-
84871174239
-
AID/APOBEC cytosine deaminase induces genome-wide kataegis
-
Lada A.G., et al. AID/APOBEC cytosine deaminase induces genome-wide kataegis. Biol. Direct 2012, 7:47.
-
(2012)
Biol. Direct
, vol.7
, pp. 47
-
-
Lada, A.G.1
-
19
-
-
84899645475
-
Association of a germline copy number polymorphism of APOBEC3A and APOBEC3B with burden of putative APOBEC-dependent mutations in breast cancer
-
Nik-Zainal S., et al. Association of a germline copy number polymorphism of APOBEC3A and APOBEC3B with burden of putative APOBEC-dependent mutations in breast cancer. Nat. Genet. 2014, 46:487-491.
-
(2014)
Nat. Genet.
, vol.46
, pp. 487-491
-
-
Nik-Zainal, S.1
-
20
-
-
84906303775
-
Mechanisms underlying mutational signatures in human cancers
-
Helleday T., et al. Mechanisms underlying mutational signatures in human cancers. Nat. Rev. Genet. 2014, 15:585-598.
-
(2014)
Nat. Rev. Genet.
, vol.15
, pp. 585-598
-
-
Helleday, T.1
-
21
-
-
84907481031
-
C. elegans whole-genome sequencing reveals mutational signatures related to carcinogens and DNA repair deficiency
-
Meier B., et al. C. elegans whole-genome sequencing reveals mutational signatures related to carcinogens and DNA repair deficiency. Genome Res. 2014, 24:1624-1636.
-
(2014)
Genome Res.
, vol.24
, pp. 1624-1636
-
-
Meier, B.1
-
22
-
-
84919399353
-
Having a direct look: analysis of DNA damage and repair mechanisms by next generation sequencing
-
Meier B., Gartner A. Having a direct look: analysis of DNA damage and repair mechanisms by next generation sequencing. Exp. Cell Res. 2014, 329:35-41.
-
(2014)
Exp. Cell Res.
, vol.329
, pp. 35-41
-
-
Meier, B.1
Gartner, A.2
-
23
-
-
84901293540
-
Genome destabilizing mutator alleles drive specific mutational trajectories in Saccharomyces cerevisiae
-
Stirling P.C., et al. Genome destabilizing mutator alleles drive specific mutational trajectories in Saccharomyces cerevisiae. Genetics 2014, 196:403-412.
-
(2014)
Genetics
, vol.196
, pp. 403-412
-
-
Stirling, P.C.1
-
24
-
-
84893502065
-
Mutational landscape of yeast mutator strains
-
Serero A., et al. Mutational landscape of yeast mutator strains. Proc. Natl. Acad. Sci. U.S.A. 2014, 111:1897-1902.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 1897-1902
-
-
Serero, A.1
-
25
-
-
70349964711
-
Genomic mutation rates: what high-throughput methods can tell us
-
Nishant K.T., et al. Genomic mutation rates: what high-throughput methods can tell us. Bioessays 2009, 31:912-920.
-
(2009)
Bioessays
, vol.31
, pp. 912-920
-
-
Nishant, K.T.1
-
26
-
-
0033611501
-
High genomic deleterious mutation rates in hominids
-
Eyre-Walker A., Keightley P.D. High genomic deleterious mutation rates in hominids. Nature 1999, 397:344-347.
-
(1999)
Nature
, vol.397
, pp. 344-347
-
-
Eyre-Walker, A.1
Keightley, P.D.2
-
27
-
-
79959725029
-
Variation in genome-wide mutation rates within and between human families
-
Conrad D.F., et al. Variation in genome-wide mutation rates within and between human families. Nat. Genet. 2011, 43:712-714.
-
(2011)
Nat. Genet.
, vol.43
, pp. 712-714
-
-
Conrad, D.F.1
-
28
-
-
84868214089
-
Estimating the human mutation rate using autozygosity in a founder population
-
Campbell C.D., et al. Estimating the human mutation rate using autozygosity in a founder population. Nat. Genet. 2012, 44:1277-1281.
-
(2012)
Nat. Genet.
, vol.44
, pp. 1277-1281
-
-
Campbell, C.D.1
-
29
-
-
0002880568
-
Genetic organization in Caenorhabditis elegans: fine-structure analysis of the unc-22 Gene
-
Moerman D.G., Baillie D.L. Genetic organization in Caenorhabditis elegans: fine-structure analysis of the unc-22 Gene. Genetics 1979, 91:95-103.
-
(1979)
Genetics
, vol.91
, pp. 95-103
-
-
Moerman, D.G.1
Baillie, D.L.2
-
30
-
-
0018656297
-
Identifying environmental chemicals causing mutations and cancer
-
Ames B.N. Identifying environmental chemicals causing mutations and cancer. Science 1979, 204:587-593.
-
(1979)
Science
, vol.204
, pp. 587-593
-
-
Ames, B.N.1
-
31
-
-
79955602011
-
The complete spectrum of yeast chromosome instability genes identifies candidate CIN cancer genes and functional roles for ASTRA complex components
-
Stirling P.C., et al. The complete spectrum of yeast chromosome instability genes identifies candidate CIN cancer genes and functional roles for ASTRA complex components. PLoS Genet. 2011, 7:e1002057.
-
(2011)
PLoS Genet.
, vol.7
, pp. e1002057
-
-
Stirling, P.C.1
-
32
-
-
0141482059
-
A genomewide screen in Saccharomyces cerevisiae for genes that suppress the accumulation of mutations
-
Huang M.E., et al. A genomewide screen in Saccharomyces cerevisiae for genes that suppress the accumulation of mutations. Proc. Natl. Acad. Sci. U.S.A. 2003, 100:11529-11534.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 11529-11534
-
-
Huang, M.E.1
-
33
-
-
34247200412
-
Systematic genome instability screens in yeast and their potential relevance to cancer
-
Yuen K.W., et al. Systematic genome instability screens in yeast and their potential relevance to cancer. Proc. Natl. Acad. Sci. U.S.A. 2007, 104:3925-3930.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 3925-3930
-
-
Yuen, K.W.1
-
34
-
-
0027306173
-
Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair
-
Strand M., et al. Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair. Nature 1993, 365:274-276.
-
(1993)
Nature
, vol.365
, pp. 274-276
-
-
Strand, M.1
-
35
-
-
0036699095
-
Disruption of dog-1 in Caenorhabditis elegans triggers deletions upstream of guanine-rich DNA
-
Cheung I., et al. Disruption of dog-1 in Caenorhabditis elegans triggers deletions upstream of guanine-rich DNA. Nat. Genet. 2002, 31:405-409.
-
(2002)
Nat. Genet.
, vol.31
, pp. 405-409
-
-
Cheung, I.1
-
36
-
-
45449102827
-
Mutagenic capacity of endogenous G4 DNA underlies genome instability in FANCJ-defective C. elegans
-
Kruisselbrink E., et al. Mutagenic capacity of endogenous G4 DNA underlies genome instability in FANCJ-defective C. elegans. Curr. Biol. 2008, 18:900-905.
-
(2008)
Curr. Biol.
, vol.18
, pp. 900-905
-
-
Kruisselbrink, E.1
-
37
-
-
53149127633
-
Spectrum of mutational events in the absence of DOG-1/FANCJ in Caenorhabditis elegans
-
Zhao Y., et al. Spectrum of mutational events in the absence of DOG-1/FANCJ in Caenorhabditis elegans. DNA Repair (Amst.) 2008, 7:1846-1854.
-
(2008)
DNA Repair (Amst.)
, vol.7
, pp. 1846-1854
-
-
Zhao, Y.1
-
38
-
-
40849138236
-
Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae
-
Lang G.I., Murray A.W. Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae. Genetics 2008, 178:67-82.
-
(2008)
Genetics
, vol.178
, pp. 67-82
-
-
Lang, G.I.1
Murray, A.W.2
-
39
-
-
57149102482
-
Silent but not static: accelerated base-pair substitution in silenced chromatin of budding yeasts
-
Teytelman L., et al. Silent but not static: accelerated base-pair substitution in silenced chromatin of budding yeasts. PLoS Genet. 2008, 4:e1000247.
-
(2008)
PLoS Genet.
, vol.4
, pp. e1000247
-
-
Teytelman, L.1
-
40
-
-
20844442964
-
Variation in efficiency of DNA mismatch repair at different sites in the yeast genome
-
Hawk J.D., et al. Variation in efficiency of DNA mismatch repair at different sites in the yeast genome. Proc. Natl. Acad. Sci. U.S.A. 2005, 102:8639-8643.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 8639-8643
-
-
Hawk, J.D.1
-
41
-
-
0029065571
-
Association of increased spontaneous mutation rates with high levels of transcription in yeast
-
Datta A., Jinks-Robertson S. Association of increased spontaneous mutation rates with high levels of transcription in yeast. Science 1995, 268:1616-1619.
-
(1995)
Science
, vol.268
, pp. 1616-1619
-
-
Datta, A.1
Jinks-Robertson, S.2
-
42
-
-
80052919408
-
Mutation rates across budding yeast chromosome VI are correlated with replication timing
-
Lang G.I., Murray A.W. Mutation rates across budding yeast chromosome VI are correlated with replication timing. Genome Biol. Evol. 2011, 3:799-811.
-
(2011)
Genome Biol. Evol.
, vol.3
, pp. 799-811
-
-
Lang, G.I.1
Murray, A.W.2
-
43
-
-
1642514804
-
Death and more: DNA damage response pathways in the nematode C. elegans
-
Stergiou L., Hengartner M.O. Death and more: DNA damage response pathways in the nematode C. elegans. Cell Death Differ. 2004, 11:21-28.
-
(2004)
Cell Death Differ.
, vol.11
, pp. 21-28
-
-
Stergiou, L.1
Hengartner, M.O.2
-
44
-
-
84867339877
-
Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing
-
Lee H., et al. Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing. Proc. Natl. Acad. Sci. U.S.A. 2012, 109:E2774-E2783.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. E2774-E2783
-
-
Lee, H.1
-
45
-
-
84864089075
-
Variation in base-substitution mutation in experimental and natural lineages of Caenorhabditis nematodes
-
Denver D.R., et al. Variation in base-substitution mutation in experimental and natural lineages of Caenorhabditis nematodes. Genome Biol. Evol. 2012, 4:513-522.
-
(2012)
Genome Biol. Evol.
, vol.4
, pp. 513-522
-
-
Denver, D.R.1
-
46
-
-
48249133274
-
A genome-wide view of the spectrum of spontaneous mutations in yeast
-
Lynch M., et al. A genome-wide view of the spectrum of spontaneous mutations in yeast. Proc. Natl. Acad. Sci. U.S.A. 2008, 105:9272-9277.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 9272-9277
-
-
Lynch, M.1
-
47
-
-
84881056465
-
Rates and genomic consequences of spontaneous mutational events in Drosophila melanogaster
-
Schrider D.R., et al. Rates and genomic consequences of spontaneous mutational events in Drosophila melanogaster. Genetics 2013, 194:937-954.
-
(2013)
Genetics
, vol.194
, pp. 937-954
-
-
Schrider, D.R.1
-
48
-
-
78049433266
-
The baker's yeast diploid genome is remarkably stable in vegetative growth and meiosis
-
Nishant K.T., et al. The baker's yeast diploid genome is remarkably stable in vegetative growth and meiosis. PLoS Genet. 2010, 6:e1001109.
-
(2010)
PLoS Genet.
, vol.6
, pp. e1001109
-
-
Nishant, K.T.1
-
49
-
-
74849090833
-
The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana
-
Ossowski S., et al. The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana. Science 2010, 327:92-94.
-
(2010)
Science
, vol.327
, pp. 92-94
-
-
Ossowski, S.1
-
50
-
-
70349507538
-
A genome-wide view of Caenorhabditis elegans base-substitution mutation processes
-
Denver D.R., et al. A genome-wide view of Caenorhabditis elegans base-substitution mutation processes. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:16310-16314.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 16310-16314
-
-
Denver, D.R.1
-
51
-
-
67650064592
-
Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines
-
Keightley P.D., et al. Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines. Genome Res. 2009, 19:1195-1201.
-
(2009)
Genome Res.
, vol.19
, pp. 1195-1201
-
-
Keightley, P.D.1
-
52
-
-
84867301449
-
Whole genome sequencing of mutation accumulation lines reveals a low mutation rate in the social amoeba Dictyostelium discoideum
-
Saxer G., et al. Whole genome sequencing of mutation accumulation lines reveals a low mutation rate in the social amoeba Dictyostelium discoideum. PLoS ONE 2012, 7:e46759.
-
(2012)
PLoS ONE
, vol.7
, pp. e46759
-
-
Saxer, G.1
-
53
-
-
84901824457
-
Precise estimates of mutation rate and spectrum in yeast
-
Zhu Y.O., et al. Precise estimates of mutation rate and spectrum in yeast. Proc. Natl. Acad. Sci. U.S.A. 2014, 111:E2310-E2318.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. E2310-E2318
-
-
Zhu, Y.O.1
-
54
-
-
84883132678
-
Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations
-
Lang G.I., et al. Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations. Nature 2013, 500:571-574.
-
(2013)
Nature
, vol.500
, pp. 571-574
-
-
Lang, G.I.1
-
55
-
-
84861168500
-
Mutation hot spots in yeast caused by long-range clustering of homopolymeric sequences
-
Ma X., et al. Mutation hot spots in yeast caused by long-range clustering of homopolymeric sequences. Cell Rep. 2012, 1:36-42.
-
(2012)
Cell Rep.
, vol.1
, pp. 36-42
-
-
Ma, X.1
-
56
-
-
78951483949
-
Detection of heterozygous mutations in the genome of mismatch repair defective diploid yeast using a Bayesian approach
-
Zanders S., et al. Detection of heterozygous mutations in the genome of mismatch repair defective diploid yeast using a Bayesian approach. Genetics 2010, 186:493-503.
-
(2010)
Genetics
, vol.186
, pp. 493-503
-
-
Zanders, S.1
-
57
-
-
84896523433
-
Mutation rates, spectra, and genome-wide distribution of spontaneous mutations in mismatch repair deficient yeast
-
Lang G.I., et al. Mutation rates, spectra, and genome-wide distribution of spontaneous mutations in mismatch repair deficient yeast. G3 2013, 3:1453-1465.
-
(2013)
G3
, vol.3
, pp. 1453-1465
-
-
Lang, G.I.1
-
58
-
-
84883214477
-
On the mutational topology of the bacterial genome
-
Foster P.L., et al. On the mutational topology of the bacterial genome. G3 2013, 3:399-407.
-
(2013)
G3
, vol.3
, pp. 399-407
-
-
Foster, P.L.1
-
59
-
-
84923948943
-
Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition
-
Lujan S.A., et al. Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition. Genome Res. 2014, 24:1751-1764.
-
(2014)
Genome Res.
, vol.24
, pp. 1751-1764
-
-
Lujan, S.A.1
-
60
-
-
76549111046
-
Defective mismatch repair, microsatellite mutation bias, and variability in clinical cancer phenotypes
-
Shah S.N., et al. Defective mismatch repair, microsatellite mutation bias, and variability in clinical cancer phenotypes. Cancer Res. 2010, 70:431-435.
-
(2010)
Cancer Res.
, vol.70
, pp. 431-435
-
-
Shah, S.N.1
-
61
-
-
77956271440
-
The ATM-p53 pathway suppresses aneuploidy-induced tumorigenesis
-
Li M., et al. The ATM-p53 pathway suppresses aneuploidy-induced tumorigenesis. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:14188-14193.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 14188-14193
-
-
Li, M.1
-
62
-
-
84875894854
-
The role of telomere biology in cancer
-
Xu L., et al. The role of telomere biology in cancer. Annu. Rev. Pathol. 2013, 8:49-78.
-
(2013)
Annu. Rev. Pathol.
, vol.8
, pp. 49-78
-
-
Xu, L.1
-
63
-
-
84897528140
-
Constitutional and somatic rearrangement of chromosome 21 in acute lymphoblastic leukaemia
-
Li Y., et al. Constitutional and somatic rearrangement of chromosome 21 in acute lymphoblastic leukaemia. Nature 2014, 508:98-102.
-
(2014)
Nature
, vol.508
, pp. 98-102
-
-
Li, Y.1
-
64
-
-
78049270970
-
Genome-wide model for the normal eukaryotic DNA replication fork
-
Larrea A.A., et al. Genome-wide model for the normal eukaryotic DNA replication fork. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:17674-17679.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 17674-17679
-
-
Larrea, A.A.1
-
65
-
-
84924180985
-
Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation
-
Clausen A.R., et al. Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation. Nat. Struct. Mol. Biol. 2015, 22:185-191.
-
(2015)
Nat. Struct. Mol. Biol.
, vol.22
, pp. 185-191
-
-
Clausen, A.R.1
-
66
-
-
84923844518
-
Ribose-seq: global mapping of ribonucleotides embedded in genomic DNA
-
Koh K.D., et al. Ribose-seq: global mapping of ribonucleotides embedded in genomic DNA. Nat. Methods 2015, 12:251-257.
-
(2015)
Nat. Methods
, vol.12
, pp. 251-257
-
-
Koh, K.D.1
-
67
-
-
84924072858
-
Lagging-strand replication shapes the mutational landscape of the genome
-
Reijns M.A., et al. Lagging-strand replication shapes the mutational landscape of the genome. Nature 2015, 518:502-506.
-
(2015)
Nature
, vol.518
, pp. 502-506
-
-
Reijns, M.A.1
-
68
-
-
84923989372
-
Combined hereditary and somatic mutations of replication error repair genes result in rapid onset of ultra-hypermutated cancers
-
Shlien A., et al. Combined hereditary and somatic mutations of replication error repair genes result in rapid onset of ultra-hypermutated cancers. Nat. Genet. 2015, 47:257-262.
-
(2015)
Nat. Genet.
, vol.47
, pp. 257-262
-
-
Shlien, A.1
-
69
-
-
84873390533
-
Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability
-
Drier Y., et al. Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability. Genome Res. 2013, 23:228-235.
-
(2013)
Genome Res.
, vol.23
, pp. 228-235
-
-
Drier, Y.1
-
70
-
-
84884686754
-
Genome-wide mutation avalanches induced in diploid yeast cells by a base analog or an APOBEC deaminase
-
Lada A.G., et al. Genome-wide mutation avalanches induced in diploid yeast cells by a base analog or an APOBEC deaminase. PLoS Genet. 2013, 9:e1003736.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003736
-
-
Lada, A.G.1
-
71
-
-
46249091062
-
Mph1p promotes gross chromosomal rearrangement through partial inhibition of homologous recombination
-
Banerjee S., et al. Mph1p promotes gross chromosomal rearrangement through partial inhibition of homologous recombination. J. Cell Biol. 2008, 181:1083-1093.
-
(2008)
J. Cell Biol.
, vol.181
, pp. 1083-1093
-
-
Banerjee, S.1
-
72
-
-
0032915375
-
Mutator phenotypes conferred by MLH1 overexpression and by heterozygosity for mlh1 mutations
-
Shcherbakova P.V., Kunkel T.A. Mutator phenotypes conferred by MLH1 overexpression and by heterozygosity for mlh1 mutations. Mol. Cell Biol. 1999, 19:3177-3183.
-
(1999)
Mol. Cell Biol.
, vol.19
, pp. 3177-3183
-
-
Shcherbakova, P.V.1
Kunkel, T.A.2
-
73
-
-
63449093534
-
The alcohol flushing response: an unrecognized risk factor for esophageal cancer from alcohol consumption
-
Brooks P.J., et al. The alcohol flushing response: an unrecognized risk factor for esophageal cancer from alcohol consumption. PLoS Med. 2009, 6:e50.
-
(2009)
PLoS Med.
, vol.6
, pp. e50
-
-
Brooks, P.J.1
-
74
-
-
14644438645
-
Mutations induced by ultraviolet light
-
Pfeifer G.P., et al. Mutations induced by ultraviolet light. Mutat. Res. 2005, 571:19-31.
-
(2005)
Mutat. Res.
, vol.571
, pp. 19-31
-
-
Pfeifer, G.P.1
-
75
-
-
84867288246
-
A high-throughput next-generation sequencing-based method for detecting the mutational fingerprint of carcinogens
-
Besaratinia A., et al. A high-throughput next-generation sequencing-based method for detecting the mutational fingerprint of carcinogens. Nucleic Acids Res. 2012, 40:e116.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. e116
-
-
Besaratinia, A.1
-
76
-
-
84883894030
-
Mutational signature of aristolochic acid exposure as revealed by whole-exome sequencing
-
197ra102
-
Hoang M.L., et al. Mutational signature of aristolochic acid exposure as revealed by whole-exome sequencing. Sci. Transl. Med. 2013, 5:197ra102.
-
(2013)
Sci. Transl. Med.
, vol.5
-
-
Hoang, M.L.1
-
77
-
-
84883872416
-
Genome-wide mutational signatures of aristolochic acid and its application as a screening tool
-
197ra101
-
Poon S.L., et al. Genome-wide mutational signatures of aristolochic acid and its application as a screening tool. Sci. Transl. Med. 2013, 5:197ra101.
-
(2013)
Sci. Transl. Med.
, vol.5
-
-
Poon, S.L.1
-
79
-
-
77955499817
-
Whole-genome profiling of mutagenesis in Caenorhabditis elegans
-
Flibotte S., et al. Whole-genome profiling of mutagenesis in Caenorhabditis elegans. Genetics 2010, 185:431-441.
-
(2010)
Genetics
, vol.185
, pp. 431-441
-
-
Flibotte, S.1
-
80
-
-
77955486655
-
Analysis of multiple ethyl methanesulfonate-mutagenized Caenorhabditis elegans strains by whole-genome sequencing
-
Sarin S., et al. Analysis of multiple ethyl methanesulfonate-mutagenized Caenorhabditis elegans strains by whole-genome sequencing. Genetics 2010, 185:417-430.
-
(2010)
Genetics
, vol.185
, pp. 417-430
-
-
Sarin, S.1
-
81
-
-
84884266257
-
The million mutation project: a new approach to genetics in Caenorhabditis elegans
-
Thompson O., et al. The million mutation project: a new approach to genetics in Caenorhabditis elegans. Genome Res. 2013, 23:1749-1762.
-
(2013)
Genome Res.
, vol.23
, pp. 1749-1762
-
-
Thompson, O.1
-
82
-
-
77649284459
-
Genomic sequence of a mutant strain of Caenorhabditis elegans with an altered recombination pattern
-
Rose A.M., et al. Genomic sequence of a mutant strain of Caenorhabditis elegans with an altered recombination pattern. BMC Genomics 2010, 11:131.
-
(2010)
BMC Genomics
, vol.11
, pp. 131
-
-
Rose, A.M.1
-
83
-
-
79953652263
-
Damage-induced localized hypermutability
-
Burch L.H., et al. Damage-induced localized hypermutability. Cell Cycle 2011, 10:1073-1085.
-
(2011)
Cell Cycle
, vol.10
, pp. 1073-1085
-
-
Burch, L.H.1
-
84
-
-
84872008477
-
Base damage within single-strand DNA underlies in vivo hypermutability induced by a ubiquitous environmental agent
-
Chan K., et al. Base damage within single-strand DNA underlies in vivo hypermutability induced by a ubiquitous environmental agent. PLoS Genet. 2012, 8:e1003149.
-
(2012)
PLoS Genet.
, vol.8
, pp. e1003149
-
-
Chan, K.1
-
85
-
-
84916939421
-
Characterization of the mutagenic spectrum of 4-nitroquinoline 1-oxide (4-NQO) in Aspergillus nidulans by whole genome sequencing
-
Downes D.J., et al. Characterization of the mutagenic spectrum of 4-nitroquinoline 1-oxide (4-NQO) in Aspergillus nidulans by whole genome sequencing. G3 2014, 4:2483-2492.
-
(2014)
G3
, vol.4
, pp. 2483-2492
-
-
Downes, D.J.1
-
86
-
-
15744397978
-
Whither model organism research?
-
Fields S., Johnston M. Whither model organism research?. Science 2005, 307:1885-1886.
-
(2005)
Science
, vol.307
, pp. 1885-1886
-
-
Fields, S.1
Johnston, M.2
-
87
-
-
84870709677
-
Estimate of the spontaneous mutation rate in Chlamydomonas reinhardtii
-
Ness R.W., et al. Estimate of the spontaneous mutation rate in Chlamydomonas reinhardtii. Genetics 2012, 192:1447-1454.
-
(2012)
Genetics
, vol.192
, pp. 1447-1454
-
-
Ness, R.W.1
-
88
-
-
84868599895
-
Drift-barrier hypothesis and mutation-rate evolution
-
Sung W., et al. Drift-barrier hypothesis and mutation-rate evolution. Proc. Natl. Acad. Sci. U.S.A. 2012, 109:18488-18492.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 18488-18492
-
-
Sung, W.1
-
89
-
-
84868579284
-
Extraordinary genome stability in the ciliate Paramecium tetraurelia
-
Sung W., et al. Extraordinary genome stability in the ciliate Paramecium tetraurelia. Proc. Natl. Acad. Sci. U.S.A. 2012, 109:19339-19344.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 19339-19344
-
-
Sung, W.1
-
90
-
-
84922298785
-
Active RNAP pre-initiation sites are highly mutated by cytidine deaminases in yeast, with AID targeting small RNA genes
-
Taylor B.J., et al. Active RNAP pre-initiation sites are highly mutated by cytidine deaminases in yeast, with AID targeting small RNA genes. Elife 2014, 3:e03553.
-
(2014)
Elife
, vol.3
, pp. e03553
-
-
Taylor, B.J.1
-
91
-
-
84900868097
-
Whole genome profiling of spontaneous and chemically induced mutations in Toxoplasma gondii
-
Farrell A., et al. Whole genome profiling of spontaneous and chemically induced mutations in Toxoplasma gondii. BMC Genomics 2014, 15:354.
-
(2014)
BMC Genomics
, vol.15
, pp. 354
-
-
Farrell, A.1
-
92
-
-
84928236984
-
Mutation rate, spectrum, topology, and context-dependency in the DNA mismatch repair-deficient pseudomonas fluorescens ATCC948
-
Long H., et al. Mutation rate, spectrum, topology, and context-dependency in the DNA mismatch repair-deficient pseudomonas fluorescens ATCC948. Genome Biol. Evol. 2014, 7:262-271.
-
(2014)
Genome Biol. Evol.
, vol.7
, pp. 262-271
-
-
Long, H.1
-
93
-
-
84877747678
-
DNA polymerase epsilon and delta exonuclease domain mutations in endometrial cancer
-
Church D.N., et al. DNA polymerase epsilon and delta exonuclease domain mutations in endometrial cancer. Hum. Mol. Genet. 2013, 22:2820-2828.
-
(2013)
Hum. Mol. Genet.
, vol.22
, pp. 2820-2828
-
-
Church, D.N.1
-
94
-
-
84873096362
-
Germline mutations affecting the proofreading domains of POLE and POLD1 predispose to colorectal adenomas and carcinomas
-
Palles C., et al. Germline mutations affecting the proofreading domains of POLE and POLD1 predispose to colorectal adenomas and carcinomas. Nat. Genet. 2013, 45:136-144.
-
(2013)
Nat. Genet.
, vol.45
, pp. 136-144
-
-
Palles, C.1
-
95
-
-
78049380554
-
The patterns and dynamics of genomic instability in metastatic pancreatic cancer
-
Campbell P.J., et al. The patterns and dynamics of genomic instability in metastatic pancreatic cancer. Nature 2010, 467:1109-1113.
-
(2010)
Nature
, vol.467
, pp. 1109-1113
-
-
Campbell, P.J.1
-
96
-
-
34047210411
-
TP53 mutations and hepatocellular carcinoma: insights into the etiology and pathogenesis of liver cancer
-
Hussain S.P., et al. TP53 mutations and hepatocellular carcinoma: insights into the etiology and pathogenesis of liver cancer. Oncogene 2007, 26:2166-2176.
-
(2007)
Oncogene
, vol.26
, pp. 2166-2176
-
-
Hussain, S.P.1
-
97
-
-
69249129569
-
In vitro recapitulating of TP53 mutagenesis in hepatocellular carcinoma associated with dietary aflatoxin B1 exposure
-
Besaratinia A., et al. In vitro recapitulating of TP53 mutagenesis in hepatocellular carcinoma associated with dietary aflatoxin B1 exposure. Gastroenterology 2009, 137:1127-1137.
-
(2009)
Gastroenterology
, vol.137
, pp. 1127-1137
-
-
Besaratinia, A.1
-
98
-
-
21744452376
-
Cancer in xeroderma pigmentosum and related disorders of DNA repair
-
Cleaver J.E. Cancer in xeroderma pigmentosum and related disorders of DNA repair. Nat. Rev. Cancer 2005, 5:564-573.
-
(2005)
Nat. Rev. Cancer
, vol.5
, pp. 564-573
-
-
Cleaver, J.E.1
-
99
-
-
84856801304
-
A genomewide screen for suppressors of Alu-mediated rearrangements reveals a role for PIF1
-
Chisholm K.M., et al. A genomewide screen for suppressors of Alu-mediated rearrangements reveals a role for PIF1. PLoS ONE 2012, 7:e30748.
-
(2012)
PLoS ONE
, vol.7
, pp. e30748
-
-
Chisholm, K.M.1
-
100
-
-
84938288672
-
The FEN1 E359K germline mutation disrupts the FEN1-WRN interaction and FEN1 GEN activity, causing aneuploidy-associated cancers
-
Chung L., et al. The FEN1 E359K germline mutation disrupts the FEN1-WRN interaction and FEN1 GEN activity, causing aneuploidy-associated cancers. Oncogene 2015, 34:902-911.
-
(2015)
Oncogene
, vol.34
, pp. 902-911
-
-
Chung, L.1
-
101
-
-
84901686903
-
Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk
-
Zhang B., et al. Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk. Nat. Genet. 2014, 46:533-542.
-
(2014)
Nat. Genet.
, vol.46
, pp. 533-542
-
-
Zhang, B.1
-
102
-
-
84905382541
-
Modelling mutational landscapes of human cancers in vitro
-
Olivier M., et al. Modelling mutational landscapes of human cancers in vitro. Sci. Rep. 2014, 4:4482.
-
(2014)
Sci. Rep.
, vol.4
, pp. 4482
-
-
Olivier, M.1
-
103
-
-
84925536961
-
The mutational landscapes of genetic and chemical models of Kras-driven lung cancer
-
Westcott P.M., et al. The mutational landscapes of genetic and chemical models of Kras-driven lung cancer. Nature 2015, 517:489-492.
-
(2015)
Nature
, vol.517
, pp. 489-492
-
-
Westcott, P.M.1
-
104
-
-
84912046893
-
Exome-wide mutation profile in benzo[a]pyrene-derived post-stasis and immortal human mammary epithelial cells
-
Severson P.L., et al. Exome-wide mutation profile in benzo[a]pyrene-derived post-stasis and immortal human mammary epithelial cells. Mut. Res. 2014, 775-776:48-54.
-
(2014)
Mut. Res.
, pp. 48-54
-
-
Severson, P.L.1
|