-
1
-
-
75749103383
-
Rate, molecular spectrum, and consequences of spontaneous mutations in man
-
Lynch M (2009) Rate, molecular spectrum, and consequences of spontaneous mutations in man. Proc Natl Acad Sci USA 107(3):961-968.
-
(2009)
Proc Natl Acad Sci USA
, vol.107
, Issue.3
, pp. 961-968
-
-
Lynch, M.1
-
2
-
-
78049445172
-
Evidence that mutation is universally biased towards at in bacteria
-
Hershberg R, Petrov DA (2010) Evidence that mutation is universally biased towards AT in bacteria. PLoS Genet 6(9):e1001115.
-
(2010)
PLoS Genet
, vol.6
, Issue.9
-
-
Hershberg, R.1
Petrov, D.A.2
-
3
-
-
78049425463
-
Evidence of selection upon genomic GC-content in bacteria
-
Hildebrand F, Meyer A, Eyre-Walker A (2010) Evidence of selection upon genomic GC-content in bacteria. PLoS Genet 6(9):e1001107.
-
(2010)
PLoS Genet
, vol.6
, Issue.9
-
-
Hildebrand, F.1
Meyer, A.2
Eyre-Walker, A.3
-
4
-
-
77955090647
-
Evolution of the mutation rate
-
Lynch M (2010) Evolution of the mutation rate. Trends Genet 26(8):345-352.
-
(2010)
Trends Genet
, vol.26
, Issue.8
, pp. 345-352
-
-
Lynch, M.1
-
5
-
-
0035479142
-
Deletional bias and the evolution of bacterial genomes
-
DOI 10.1016/S0168-9525(01)02447-7, PII S0168952501024477
-
Mira A, Ochman H, Moran NA (2001) Deletional bias and the evolution of bacterial genomes. Trends Genet 17(10):589-596. (Pubitemid 32918301)
-
(2001)
Trends in Genetics
, vol.17
, Issue.10
, pp. 589-596
-
-
Mira, A.1
Ochman, H.2
Moran, N.A.3
-
6
-
-
70849114722
-
Deletional bias across the three domains of life
-
Kuo CH, Ochman H (2009) Deletional bias across the three domains of life. Genome Biol Evol 1:145-152.
-
(2009)
Genome Biol Evol
, vol.1
, pp. 145-152
-
-
Kuo, C.H.1
Ochman, H.2
-
8
-
-
0025886466
-
A constant rate of spontaneous mutation in DNA-based microbes
-
Drake JW (1991) A constant rate of spontaneous mutation in DNA-based microbes. Proc Natl Acad Sci USA 88(16):7160-7164.
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, Issue.16
, pp. 7160-7164
-
-
Drake, J.W.1
-
9
-
-
0032815107
-
Spontaneous deleterious mutation
-
Lynch M, et al. (1999) Spontaneous deleterious mutation. Evolution 53:645-663.
-
(1999)
Evolution
, vol.53
, pp. 645-663
-
-
Lynch, M.1
-
10
-
-
34447564992
-
Mutation rate variation in multicellular eukaryotes: Causes and consequences
-
DOI 10.1038/nrg2158, PII NRG2158
-
Baer CF, Miyamoto MM, Denver DR (2007) Mutation rate variation in multicellular eukaryotes: Causes and consequences. Nat Rev Genet 8(8):619-631. (Pubitemid 47077282)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.8
, pp. 619-631
-
-
Baer, C.F.1
Miyamoto, M.M.2
Denver, D.R.3
-
11
-
-
48249133274
-
A genome-wide view of the spectrum of spontaneous mutations in yeast
-
Lynch M, et al. (2008) A genome-wide view of the spectrum of spontaneous mutations in yeast. Proc Natl Acad Sci USA 105(27):9272-9277.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.27
, pp. 9272-9277
-
-
Lynch, M.1
-
12
-
-
67650064592
-
Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines
-
Keightley PD, et al. (2009) Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines. Genome Res 19(7):1195-1201.
-
(2009)
Genome Res
, vol.19
, Issue.7
, pp. 1195-1201
-
-
Keightley, P.D.1
-
13
-
-
84864089075
-
Variation in base-substitution mutation in experimental and natural lineages of Caenorhabditis nematodes
-
Denver DR, et al. (2012) Variation in base-substitution mutation in experimental and natural lineages of Caenorhabditis nematodes. Genome Biol Evol 4(4):513-522.
-
(2012)
Genome Biol Evol
, vol.4
, Issue.4
, pp. 513-522
-
-
Denver, D.R.1
-
14
-
-
35348896591
-
The Chlamydomonas genome reveals the evolution of key animal and plant functions
-
Merchant SS, et al. (2007) The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318(5848):245-250.
-
(2007)
Science
, vol.318
, Issue.5848
, pp. 245-250
-
-
Merchant, S.S.1
-
15
-
-
74849090833
-
The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana
-
Ossowski S, et al. (2010) The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana. Science 327(5961):92-94.
-
(2010)
Science
, vol.327
, Issue.5961
, pp. 92-94
-
-
Ossowski, S.1
-
16
-
-
84868579284
-
Extraordinary genome stability in the ciliate Paramecium tetraurelia
-
10.1073/pnas.1210663109
-
Sung W, et al. (2012) Extraordinary genome stability in the ciliate Paramecium tetraurelia. Proc Natl Acad Sci USA, 10.1073/pnas.1210663109.
-
(2012)
Proc Natl Acad Sci USA
-
-
Sung, W.1
-
17
-
-
7544225525
-
Rapid accumulation of mutations during seed-to-seed propagation of mismatch-repair-defective Arabidopsis
-
DOI 10.1101/gad.1217204
-
Hoffman PD, Leonard JM, Lindberg GE, Bollmann SR, Hays JB (2004) Rapid accumulation of mutations during seed-to-seed propagation of mismatch-repair-defective Arabidopsis. Genes Dev 18(21):2676-2685. (Pubitemid 39453106)
-
(2004)
Genes and Development
, vol.18
, Issue.21
, pp. 2676-2685
-
-
Hoffman, P.D.1
Leonard, J.M.2
Lindberg, G.E.3
Bollmann, S.R.4
Hays, J.B.5
-
18
-
-
0029931416
-
Estimate of the genomic mutation rate deleterious to overall fitness in E. coli
-
DOI 10.1038/381694a0
-
Kibota TT, Lynch M (1996) Estimate of the genomic mutation rate deleterious to overall fitness in E. coli. Nature 381(6584):694-696. (Pubitemid 26196567)
-
(1996)
Nature
, vol.381
, Issue.6584
, pp. 694-696
-
-
Kibota, T.T.1
Lynch, M.2
-
19
-
-
58449126084
-
The dynamics and time scale of ongoing genomic erosion in symbiotic bacteria
-
Moran NA, McLaughlin HJ, Sorek R (2009) The dynamics and time scale of ongoing genomic erosion in symbiotic bacteria. Science 323(5912):379-382.
-
(2009)
Science
, vol.323
, Issue.5912
, pp. 379-382
-
-
Moran, N.A.1
McLaughlin, H.J.2
Sorek, R.3
-
20
-
-
84859192030
-
Ultrafast evolution and loss of CRISPRs following a host shift in a novel wildlife pathogen, Mycoplasma gallisepticum
-
Delaney NF, et al. (2012) Ultrafast evolution and loss of CRISPRs following a host shift in a novel wildlife pathogen, Mycoplasma gallisepticum. PLoS Genet 8(2):e1002511.
-
(2012)
PLoS Genet
, vol.8
, Issue.2
-
-
Delaney, N.F.1
-
22
-
-
34547812316
-
An unusual pattern of spontaneous mutations recovered in the halophilic archaeon Haloferax volcanii
-
DOI 10.1534/genetics.106.069666
-
Mackwan RR, Carver GT, Drake JW, Grogan DW (2007) An unusual pattern of spontaneous mutations recovered in the halophilic archaeon Haloferax volcanii. Genetics 176(1):697-702. (Pubitemid 350027259)
-
(2007)
Genetics
, vol.176
, Issue.1
, pp. 697-702
-
-
Mackwan, R.R.1
Carver, G.T.2
Drake, J.W.3
Grogan, D.W.4
-
23
-
-
80052736277
-
The lower bound to the evolution of mutation rates
-
Lynch M (2011) The lower bound to the evolution of mutation rates. Genome Biol Evol 3:1107-1118.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 1107-1118
-
-
Lynch, M.1
-
24
-
-
84959609205
-
On the evolutionary adjustment of spontaneous mutation rates
-
Kimura M (1967) On the evolutionary adjustment of spontaneous mutation rates. Genet Res 9:23-34.
-
(1967)
Genet Res
, vol.9
, pp. 23-34
-
-
Kimura, M.1
-
25
-
-
0029074889
-
Modifiers of mutation-selection balance: General approach and the evolution of mutation rates
-
Kondrashov AS (1995) Modifiers of mutation-selection balance: General approach and the evolution of mutation rates. Genet Res 66:53-70.
-
(1995)
Genet Res
, vol.66
, pp. 53-70
-
-
Kondrashov, A.S.1
-
26
-
-
0033080497
-
The dynamics of infinitesimally rare alleles, applied to the evolution of mutation rates and the expression of deleterious mutations
-
Dawson KJ (1999) The dynamics of infinitesimally rare alleles, applied to the evolution of mutation rates and the expression of deleterious mutations. Theor Popul Biol 55(1):1-22.
-
(1999)
Theor Popul Biol
, vol.55
, Issue.1
, pp. 1-22
-
-
Dawson, K.J.1
-
27
-
-
58149333880
-
The cellular, developmental and population-genetic determinants of mutation-rate evolution
-
Lynch M (2008) The cellular, developmental and population-genetic determinants of mutation-rate evolution. Genetics 180(2):933-943.
-
(2008)
Genetics
, vol.180
, Issue.2
, pp. 933-943
-
-
Lynch, M.1
-
28
-
-
0014296201
-
Genetic variability maintained in a finite population due to mutational production of neutral and nearly neutral isoalleles
-
Kimura M (1968) Genetic variability maintained in a finite population due to mutational production of neutral and nearly neutral isoalleles. Genet Res 11(3):247-269.
-
(1968)
Genet Res
, vol.11
, Issue.3
, pp. 247-269
-
-
Kimura, M.1
-
30
-
-
84855428748
-
The effects of deleterious mutations on evolution at linked sites
-
Charlesworth B (2012) The effects of deleterious mutations on evolution at linked sites. Genetics 190(1):5-22.
-
(2012)
Genetics
, vol.190
, Issue.1
, pp. 5-22
-
-
Charlesworth, B.1
-
31
-
-
83455243123
-
No evidence of elevated germline mutation accumulation under oxidative stress in Caenorhabditis elegans
-
Joyner-Matos J, Bean LC, Richardson HL, Sammeli T, Baer CF (2011) No evidence of elevated germline mutation accumulation under oxidative stress in Caenorhabditis elegans. Genetics 189(4):1439-1447.
-
(2011)
Genetics
, vol.189
, Issue.4
, pp. 1439-1447
-
-
Joyner-Matos, J.1
Bean, L.C.2
Richardson, H.L.3
Sammeli, T.4
Baer, C.F.5
-
32
-
-
84872034312
-
Temperature, stress and spontaneous mutation in Caenorhabditis briggsae and Caenorhabditis elegans
-
in press
-
Matsuba C, Ostrow DG, Salomon MP, Tolani A, Baer CF (2012) Temperature, stress and spontaneous mutation in Caenorhabditis briggsae and Caenorhabditis elegans. Biol Lett, in press.
-
(2012)
Biol Lett
-
-
Matsuba, C.1
Ostrow, D.G.2
Salomon, M.P.3
Tolani, A.4
Baer, C.F.5
-
33
-
-
84867164485
-
DNA repair pathway choice is influenced by the health of Drosophila melanogaster
-
in press
-
Wang AD, Agrawal AF (2012) DNA repair pathway choice is influenced by the health of Drosophila melanogaster. Genetics, in press.
-
(2012)
Genetics
-
-
Wang, A.D.1
Agrawal, A.F.2
-
34
-
-
84865973296
-
A selective force favoring increased G+C content in bacterial genes
-
Raghavan R, Kelkar YD, Ochman H (2012) A selective force favoring increased G+C content in bacterial genes. Proc Natl Acad Sci USA 109(36):14504-14507.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.36
, pp. 14504-14507
-
-
Raghavan, R.1
Kelkar, Y.D.2
Ochman, H.3
-
35
-
-
77954167479
-
Evidence that adaptation in Drosophila is not limited by mutation at single sites
-
Karasov T, Messer PW, Petrov DA (2010) Evidence that adaptation in Drosophila is not limited by mutation at single sites. PLoS Genet 6(6):e1000924.
-
(2010)
PLoS Genet
, vol.6
, Issue.6
-
-
Karasov, T.1
Messer, P.W.2
Petrov, D.A.3
-
38
-
-
77949587649
-
Fast and accurate long-read alignment with Burrows-Wheeler transform
-
Li H, Durbin R (2010) Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26(5):589-595.
-
(2010)
Bioinformatics
, vol.26
, Issue.5
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
-
39
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
1000 Genome Project Data Processing Subgroup
-
Li H, et al.; 1000 Genome Project Data Processing Subgroup (2009) The sequence alignment/map format and SAMtools. Bioinformatics 25(16):2078-2079.
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
-
40
-
-
70350694443
-
Pindel: A pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
-
Ye K, Schulz MH, Long Q, Apweiler R, Ning Z (2009) Pindel: A pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics 25(21):2865-2871.
-
(2009)
Bioinformatics
, vol.25
, Issue.21
, pp. 2865-2871
-
-
Ye, K.1
Schulz, M.H.2
Long, Q.3
Apweiler, R.4
Ning, Z.5
-
41
-
-
70349507538
-
A genome-wide view of Caenorhabditis elegans base-substitution mutation processes
-
Denver DR, et al. (2009) A genome-wide view of Caenorhabditis elegans base-substitution mutation processes. Proc Natl Acad Sci USA 106(38):16310-16314.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.38
, pp. 16310-16314
-
-
Denver, D.R.1
-
42
-
-
3943059570
-
High mutation rate and predominance of insertions in the Caenohabditis elegans nuclear genome
-
DOI 10.1038/nature02697
-
Denver DR, Morris K, Lynch M, Thomas WK (2004) High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome. Nature 430(7000):679-682. (Pubitemid 39061683)
-
(2004)
Nature
, vol.430
, Issue.7000
, pp. 679-682
-
-
Denver, D.R.1
Morris, K.2
Lynch, M.3
Thomas, W.K.4
|