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Volumn 46, Issue 5, 2014, Pages 487-491

Association of a germline copy number polymorphism of APOBEC3A and APOBEC3B with burden of putative APOBEC-dependent mutations in breast cancer

Author keywords

[No Author keywords available]

Indexed keywords

3' UNTRANSLATED REGION; ACUTE LYMPHOBLASTIC LEUKEMIA; ALLELE; APOBEC3A GENE; APOBEC3B GENE; ARTICLE; BLADDER CANCER; BLADDER CARCINOMA; BREAST CANCER; CANCER SUSCEPTIBILITY; CHROMOSOME 22; GENE; GENE DELETION; GENE NUMBER; GENETIC ASSOCIATION; GERMLINE MUTATION; HEAD AND NECK CANCER; HUMAN; HYBRID GENE; KIDNEY CANCER; LUNG ADENOCARCINOMA; MULTIPLE MYELOMA; PRIORITY JOURNAL; QUANTITATIVE TRAIT; RISK FACTOR; SOMATIC MUTATION; STOMACH ADENOCARCINOMA; THYROID CANCER; UTERINE CERVIX CANCER; UTERUS CANCER;

EID: 84899645475     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng.2955     Document Type: Article
Times cited : (237)

References (37)
  • 1
    • 84861541343 scopus 로고    scopus 로고
    • Mutational processes molding the genomes of 21 breast cancers
    • Nik-Zainal, S. et al. Mutational processes molding the genomes of 21 breast cancers. Cell 149, 979-993 (2012).
    • (2012) Cell , vol.149 , pp. 979-993
    • Nik-Zainal, S.1
  • 2
    • 84861550476 scopus 로고    scopus 로고
    • The life history of 21 breast cancers
    • Nik-Zainal, S. et al. The life history of 21 breast cancers. Cell 149, 994-1007 (2012).
    • (2012) Cell , vol.149 , pp. 994-1007
    • Nik-Zainal, S.1
  • 4
    • 84879098769 scopus 로고    scopus 로고
    • APOBEC3 cytidine deaminases in double-strand DNA break repair and cancer promotion
    • Nowarski, R. & Kotler, M. APOBEC3 cytidine deaminases in double-strand DNA break repair and cancer promotion. Cancer Res. 73, 3494-3498 (2013).
    • (2013) Cancer Res , vol.73 , pp. 3494-3498
    • Nowarski, R.1    Kotler, M.2
  • 5
    • 34247623286 scopus 로고    scopus 로고
    • Population stratification of a common APOBEC gene deletion polymorphism
    • Kidd, J.M., Newman, T.L., Tuzun, E., Kaul, R. & Eichler, E.E. Population stratification of a common APOBEC gene deletion polymorphism. PLoS Genet. 3, e63 (2007).
    • (2007) PLoS Genet , vol.3
    • Kidd, J.M.1    Newman, T.L.2    Tuzun, E.3    Kaul, R.4    Eichler, E.E.5
  • 6
    • 77950405093 scopus 로고    scopus 로고
    • Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls
    • Craddock, N. et al. Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls. Nature 464, 713-720 (2010).
    • (2010) Nature , vol.464 , pp. 713-720
    • Craddock, N.1
  • 7
    • 84876585078 scopus 로고    scopus 로고
    • A common deletion in the APOBEC3 genes and breast cancer risk
    • Long, J. et al. A common deletion in the APOBEC3 genes and breast cancer risk. J. Natl. Cancer Inst. 105, 573-579 (2013).
    • (2013) J. Natl. Cancer Inst , vol.105 , pp. 573-579
    • Long, J.1
  • 8
    • 84885093727 scopus 로고    scopus 로고
    • APOBEC3 deletion polymorphism is associated with breast cancer risk among women of European ancestry
    • Xuan, D. et al. APOBEC3 deletion polymorphism is associated with breast cancer risk among women of European ancestry. Carcinogenesis 34, 2240-2243 (2013).
    • (2013) Carcinogenesis , vol.34 , pp. 2240-2243
    • Xuan, D.1
  • 9
    • 84882837534 scopus 로고    scopus 로고
    • Signatures of mutational processes in human cancer
    • Alexandrov, L.B. et al. Signatures of mutational processes in human cancer. Nature 500, 415-421 (2013).
    • (2013) Nature , vol.500 , pp. 415-421
    • Alexandrov, L.B.1
  • 10
    • 0036863733 scopus 로고    scopus 로고
    • RNA editing enzyme APOBEC1 and some of its homologs can act as DNA mutators
    • Harris, R.S., Petersen-Mahrt, S.K. & Neuberger, M.S. RNA editing enzyme APOBEC1 and some of its homologs can act as DNA mutators. Mol. Cell 10, 1247-1253 (2002).
    • (2002) Mol. Cell , vol.10 , pp. 1247-1253
    • Harris, R.S.1    Petersen-Mahrt, S.K.2    Neuberger, M.S.3
  • 11
    • 50349093233 scopus 로고    scopus 로고
    • The AID/APOBEC family of nucleic acid mutators
    • Conticello, S.G. The AID/APOBEC family of nucleic acid mutators. Genome Biol. 9, 229 (2008).
    • (2008) Genome Biol , vol.9 , pp. 229
    • Conticello, S.G.1
  • 12
    • 33644636246 scopus 로고    scopus 로고
    • AID in somatic hypermutation and class switch recombination
    • Longerich, S., Basu, U., Alt, F. & Storb, U. AID in somatic hypermutation and class switch recombination. Curr. Opin. Immunol. 18, 164-174 (2006).
    • (2006) Curr. Opin. Immunol , vol.18 , pp. 164-174
    • Longerich, S.1    Basu, U.2    Alt, F.3    Storb, U.4
  • 13
    • 84874561800 scopus 로고    scopus 로고
    • Intrinsic restriction activity by AID/APOBEC family of enzymes against the mobility of retroelements
    • Koito, A. & Ikeda, T. Intrinsic restriction activity by AID/APOBEC family of enzymes against the mobility of retroelements. Mob. Genet. Elements 1, 197-202 (2011).
    • (2011) Mob. Genet. Elements , vol.1 , pp. 197-202
    • Koito, A.1    Ikeda, T.2
  • 14
    • 79953194132 scopus 로고    scopus 로고
    • Somatic hypermutation of human mitochondrial and nuclear DNA by APOBEC3 cytidine deaminases, a pathway for DNA catabolism
    • Suspène, R. et al. Somatic hypermutation of human mitochondrial and nuclear DNA by APOBEC3 cytidine deaminases, a pathway for DNA catabolism. Proc. Natl. Acad. Sci. USA 108, 4858-4863 (2011).
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 4858-4863
    • Suspène, R.1
  • 16
    • 79955530503 scopus 로고    scopus 로고
    • APOBEC3A can activate the DNA damage response and cause cell-cycle arrest
    • Landry, S., Narvaiza, I., Linfesty, D.C. & Weitzman, M.D. APOBEC3A can activate the DNA damage response and cause cell-cycle arrest. EMBO Rep. 12, 444-450 (2011).
    • (2011) EMBO Rep , vol.12 , pp. 444-450
    • Landry, S.1    Narvaiza, I.2    Linfesty, D.C.3    Weitzman, M.D.4
  • 17
    • 84879255759 scopus 로고    scopus 로고
    • Efficient deamination of 5-methylcytidine and 5-substituted cytidine residues in DNA by human APOBEC3A cytidine deaminase
    • Suspène, R., Aynaud, M.M., Vartanian, J.P. & Wain-Hobson, S. Efficient deamination of 5-methylcytidine and 5-substituted cytidine residues in DNA by human APOBEC3A cytidine deaminase. PLoS ONE 8, e63461 (2013).
    • (2013) PLoS ONE , vol.8
    • Suspène, R.1    Aynaud, M.M.2    Vartanian, J.P.3    Wain-Hobson, S.4
  • 19
    • 7544223741 scopus 로고    scopus 로고
    • A survey of outlier detection methodologies
    • Hodge, V.J. & Austin, J. A survey of outlier detection methodologies. Artif. Intell. Rev. 22, 85-126 (2004).
    • (2004) Artif. Intell. Rev , vol.22 , pp. 85-126
    • Hodge, V.J.1    Austin, J.2
  • 20
    • 84864028244 scopus 로고    scopus 로고
    • APOBEC3G enhances lymphoma cell radioresistance by promoting cytidine deaminase-dependent DNA repair
    • Nowarski, R. et al. APOBEC3G enhances lymphoma cell radioresistance by promoting cytidine deaminase-dependent DNA repair. Blood 120, 366-375 (2012).
    • (2012) Blood , vol.120 , pp. 366-375
    • Nowarski, R.1
  • 21
    • 84880231858 scopus 로고    scopus 로고
    • APOBEC3G cytosine deamination hotspots are defined by both sequence context and single-stranded DNA secondary structure
    • Holtz, C.M., Sadler, H.A. & Mansky, L.M. APOBEC3G cytosine deamination hotspots are defined by both sequence context and single-stranded DNA secondary structure. Nucleic Acids Res. 41, 6139-6148 (2013).
    • (2013) Nucleic Acids Res , vol.41 , pp. 6139-6148
    • Holtz, C.M.1    Sadler, H.A.2    Mansky, L.M.3
  • 22
    • 84878677763 scopus 로고    scopus 로고
    • NMR structure of human restriction factor APOBEC3A reveals substrate binding and enzyme specificity
    • Byeon, I.J. et al. NMR structure of human restriction factor APOBEC3A reveals substrate binding and enzyme specificity. Nat. Commun. 4, 1890 (2013).
    • (2013) Nat. Commun , vol.4 , pp. 1890
    • Byeon, I.J.1
  • 23
    • 57749198859 scopus 로고    scopus 로고
    • Murine APOBEC1 is a powerful mutator of retroviral and cellular RNA in vitro and in vivo
    • Petit, V. et al. Murine APOBEC1 is a powerful mutator of retroviral and cellular RNA in vitro and in vivo. J. Mol. Biol. 385, 65-78 (2009).
    • (2009) J. Mol. Biol , vol.385 , pp. 65-78
    • Petit, V.1
  • 24
    • 1542328859 scopus 로고    scopus 로고
    • Comparison of the differential context-dependence of DNA deamination by APOBEC enzymes: Correlation with mutation spectra in vivo
    • Beale, R.C. et al. Comparison of the differential context-dependence of DNA deamination by APOBEC enzymes: correlation with mutation spectra in vivo. J. Mol. Biol. 337, 585-596 (2004).
    • (2004) J. Mol. Biol , vol.337 , pp. 585-596
    • Beale, R.C.1
  • 25
    • 84879061509 scopus 로고    scopus 로고
    • DNA deaminases induce break-associated mutation showers with implication of APOBEC3B and 3A in breast cancer kataegis
    • Taylor, B.J. et al. DNA deaminases induce break-associated mutation showers with implication of APOBEC3B and 3A in breast cancer kataegis. Elife 2, e00534 (2013).
    • (2013) Elife , vol.2
    • Taylor, B.J.1
  • 26
    • 84869159477 scopus 로고    scopus 로고
    • APOBEC3B can impair genomic stability by inducing base substitutions in genomic DNA in human cells
    • Shinohara, M. et al. APOBEC3B can impair genomic stability by inducing base substitutions in genomic DNA in human cells. Sci. Rep. 2, 806 (2012).
    • (2012) Sci. Rep , vol.2 , pp. 806
    • Shinohara, M.1
  • 27
    • 84874188583 scopus 로고    scopus 로고
    • APOBEC3B is an enzymatic source of mutation in breast cancer
    • Burns, M.B. et al. APOBEC3B is an enzymatic source of mutation in breast cancer. Nature 494, 366-370 (2013).
    • (2013) Nature , vol.494 , pp. 366-370
    • Burns, M.B.1
  • 28
    • 84883356320 scopus 로고    scopus 로고
    • Evidence for APOBEC3B mutagenesis in multiple human cancers
    • Burns, M.B., Temiz, N.A. & Harris, R.S. Evidence for APOBEC3B mutagenesis in multiple human cancers. Nat. Genet. 45, 977-983 (2013).
    • (2013) Nat. Genet , vol.45 , pp. 977-983
    • Burns, M.B.1    Temiz, N.A.2    Harris, R.S.3
  • 29
    • 84883432724 scopus 로고    scopus 로고
    • An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers
    • Roberts, S.A. et al. An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers. Nat. Genet. 45, 970-976 (2013).
    • (2013) Nat. Genet , vol.45 , pp. 970-976
    • Roberts, S.A.1
  • 30
    • 0033481728 scopus 로고    scopus 로고
    • The bagplot: A bivariate boxplot
    • Rousseeuw, P.J., Ruts, I. & Tukey, J.W. The bagplot: a bivariate boxplot. Am. Stat. 53, 382-387 (1999).
    • (1999) Am. Stat , vol.53 , pp. 382-387
    • Rousseeuw, P.J.1    Ruts, I.2    Tukey, J.W.3
  • 31
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • 1000 Genomes Project Consortium
    • 1000 Genomes Project Consortium. A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073 (2010).
    • (2010) Nature , vol.467 , pp. 1061-1073
  • 32
    • 39749181521 scopus 로고    scopus 로고
    • Worldwide human relationships inferred from genome-wide patterns of variation
    • Li, J.Z. et al. Worldwide human relationships inferred from genome-wide patterns of variation. Science 319, 1100-1104 (2008).
    • (2008) Science , vol.319 , pp. 1100-1104
    • Li, J.Z.1
  • 33
    • 84862753535 scopus 로고    scopus 로고
    • Evolutionary genetics of the human Rh blood group system
    • Perry, G.H. et al. Evolutionary genetics of the human Rh blood group system. Hum. Genet. 131, 1205-1216 (2012).
    • (2012) Hum. Genet , vol.131 , pp. 1205-1216
    • Perry, G.H.1
  • 34
    • 72449146234 scopus 로고    scopus 로고
    • Population differentiation as an indicator of recent positive selection in humans: An empirical evaluation
    • Xue, Y. et al. Population differentiation as an indicator of recent positive selection in humans: an empirical evaluation. Genetics 183, 1065-1077 (2009).
    • (2009) Genetics , vol.183 , pp. 1065-1077
    • Xue, Y.1
  • 35
    • 66049157487 scopus 로고    scopus 로고
    • Signals of recent positive selection in a worldwide sample of human populations
    • Pickrell, J.K. et al. Signals of recent positive selection in a worldwide sample of human populations. Genome Res. 19, 826-837 (2009).
    • (2009) Genome Res , vol.19 , pp. 826-837
    • Pickrell, J.K.1
  • 36
    • 27544437635 scopus 로고    scopus 로고
    • Genome scans for selective sweeps using SNP data
    • Nielsen, R. et al. Genome scans for selective sweeps using SNP data. Genome Res. 15, 1566-1575 (2005).
    • (2005) Genome Res , vol.15 , pp. 1566-1575
    • Nielsen, R.1
  • 37
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1,092 human genomes
    • 1000 Genomes Project Consortium
    • 1000 Genomes Project Consortium. An integrated map of genetic variation from 1,092 human genomes. Nature 491, 56-65 (2012).
    • (2012) Nature , vol.491 , pp. 56-65


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