메뉴 건너뛰기




Volumn 47, Issue , 2013, Pages 139-165

Organizing principles of Mammalian nonsense-mediated mRNA decay

Author keywords

Nonsense mediated mRNA decay; Posttranscriptional gene regulation; Posttranslational gene regulation; Premature termination codon; Quality control; Translational repression; Ubiquitin proteasome system

Indexed keywords

AMINOGLYCOSIDE ANTIBIOTIC AGENT; AMLEXANOX; APTAMER; ATALUREN; BORTEZOMIB; CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REGULATOR; DNA; GENTAMICIN; HEMOGLOBIN ALPHA CHAIN; HEMOGLOBIN BETA CHAIN; MESSENGER RNA; PROTEASOME; PROTEIN MDM2; SELENOCYSTEINE; SELENOPROTEIN; SMALL INTERFERING RNA; TRANSFER RNA; UBIQUITIN;

EID: 84888617099     PISSN: 00664197     EISSN: 15452948     Source Type: Book Series    
DOI: 10.1146/annurev-genet-111212-133424     Document Type: Review
Times cited : (319)

References (209)
  • 2
    • 78651507958 scopus 로고    scopus 로고
    • The nonsense-mediated mRNA decay SMG-1 kinase is regulated by large-scale conformational changes controlled by SMG-8
    • Arias-Palomo E, Yamashita A, Fernandez IS, Nuñez-Ramirez R, Bamba Y, et al. 2011. The nonsense-mediated mRNA decay SMG-1 kinase is regulated by large-scale conformational changes controlled by SMG-8. Genes Dev. 25:153-64
    • (2011) Genes Dev. , vol.25 , pp. 153-164
    • Arias-Palomo, E.1    Yamashita, A.2    Fernandez, I.S.3    Nuñez-Ramirez, R.4    Bamba, Y.5
  • 3
    • 0033013126 scopus 로고    scopus 로고
    • Identification of CHi P, a novel tetra-tricopeptide repeat-containing protein that interacts with heat shock proteins and negatively regulates chaperone functions
    • Ballinger CA, Connell P, Wu Y, Hu Z, Thompson LJ, et al. 1999. Identification of CHi P, a novel tetra-tricopeptide repeat-containing protein that interacts with heat shock proteins and negatively regulates chaperone functions. Mol. Cell. Biol. 19:4535-45
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 4535-4545
    • Ballinger, C.A.1    Connell, P.2    Wu, Y.3    Hu, Z.4    Thompson, L.J.5
  • 6
    • 84859622560 scopus 로고    scopus 로고
    • Quality control compartments coming of age
    • Ben-Gedalya T, Cohen E. 2012. Quality control compartments coming of age. Traffic 13:635-42
    • (2012) Traffic , vol.13 , pp. 635-642
    • Ben-Gedalya, T.1    Cohen, E.2
  • 9
    • 85011942476 scopus 로고    scopus 로고
    • Assembly, disassembly and recycling: The dynamics of exon junction complexes
    • Bono F, Gehring NH. 2011. Assembly, disassembly and recycling: the dynamics of exon junction complexes. RNA Biol. 8:24-29
    • (2011) RNA Biol. , vol.8 , pp. 24-29
    • Bono, F.1    Gehring, N.H.2
  • 11
    • 79955964537 scopus 로고    scopus 로고
    • Identification of a microRNA that activates gene expression by repressing nonsense-mediated RNA decay
    • Bruno IG, Karam R, Huang L, Bhardwaj A, Lou CH, et al. 2011. Identification of a microRNA that activates gene expression by repressing nonsense-mediated RNA decay. Mol. Cell 42:500-10
    • (2011) Mol. Cell , vol.42 , pp. 500-510
    • Bruno, I.G.1    Karam, R.2    Huang, L.3    Bhardwaj, A.4    Lou, C.H.5
  • 12
    • 0036023947 scopus 로고    scopus 로고
    • Intranuclear degradationofnonsense codon-containing m RNA
    • Bühler M, Wilkinson MF, Mühlemann O. 2002. Intranuclear degradationofnonsense codon-containing m RNA. EMBO Rep. 3:646-51
    • (2002) EMBO Rep. , vol.3 , pp. 646-651
    • Bühler, M.1    Wilkinson, M.F.2    Mühlemann, O.3
  • 13
    • 0030932669 scopus 로고    scopus 로고
    • Functional characterization in vivo of mutant p53 molecules derived from squamous cell carcinomas of the head and neck
    • Cardinali M, Kratochvil FJ, Ensley JF, Robbins KC, Yeudall WA. 1997. Functional characterization in vivo of mutant p53 molecules derived from squamous cell carcinomas of the head and neck. Mol. Carcinog. 18:78-88
    • (1997) Mol. Carcinog. , vol.18 , pp. 78-88
    • Cardinali, M.1    Kratochvil, F.J.2    Ensley, J.F.3    Robbins, K.C.4    Yeudall, W.A.5
  • 14
    • 0029908912 scopus 로고    scopus 로고
    • A splicing-dependent regulatory mechanism that detects translation signals
    • Carter MS, Li S, Wilkinson MF. 1996. A splicing-dependent regulatory mechanism that detects translation signals. EMBO J. 15:5965-75
    • (1996) EMBO J. , vol.15 , pp. 5965-5975
    • Carter, M.S.1    Li, S.2    Wilkinson, M.F.3
  • 15
    • 79952686670 scopus 로고    scopus 로고
    • Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2
    • Chakrabarti S, Jayachandran U, Bonneau F, Fiorini F, Basquin C, et al. 2011. Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2. Mol. Cell 41:693-703
    • (2011) Mol. Cell , vol.41 , pp. 693-703
    • Chakrabarti, S.1    Jayachandran, U.2    Bonneau, F.3    Fiorini, F.4    Basquin, C.5
  • 16
    • 37849005006 scopus 로고    scopus 로고
    • NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity
    • Chamieh H, Ballut L, Bonneau F, Le Hir H. 2008. NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity. Nat. Struct. Mol. Biol. 15:85-93
    • (2008) Nat. Struct. Mol. Biol. , vol.15 , pp. 85-93
    • Chamieh, H.1    Ballut, L.2    Bonneau, F.3    Le Hir, H.4
  • 18
    • 34247205419 scopus 로고    scopus 로고
    • An alternative branch of the nonsense-mediated decay pathway
    • Chan WK, Huang L, Gudikote JP, Chang YF, Imam JS, et al. 2007. An alternative branch of the nonsense-mediated decay pathway. EMBO J. 26:1820-30
    • (2007) EMBO J. , vol.26 , pp. 1820-1830
    • Chan, W.K.1    Huang, L.2    Gudikote, J.P.3    Chang, Y.F.4    Imam, J.S.5
  • 19
    • 0018764020 scopus 로고
    • Beta 0 thalassemia, a nonsense mutation in man
    • Chang JC, Kan YW. 1979. beta 0 thalassemia, a nonsense mutation in man. Proc. Natl. Acad. Sci. USA 76:2886-89
    • (1979) Proc. Natl. Acad. Sci. USA , vol.76 , pp. 2886-2889
    • Chang, J.C.1    Kan, Y.W.2
  • 21
    • 0027536976 scopus 로고
    • Nonsense codons can reduce the abundance of nuclear mRNA without affecting the abundance of pre-mRNA or the half-life of cytoplasmic m RNA
    • Cheng J, Maquat LE. 1993. Nonsense codons can reduce the abundance of nuclear mRNA without affecting the abundance of pre-mRNA or the half-life of cytoplasmic m RNA. Mol. Cell. Biol. 13:1892-902
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 1892-1902
    • Cheng, J.1    Maquat, L.E.2
  • 22
    • 1842682946 scopus 로고    scopus 로고
    • The pioneer translation initiation complex is functionally distinct from but structurally overlaps with the steady-state translation initiation complex
    • Chiu SY, Lejeune F, Ranganathan AC, Maquat LE. 2004. The pioneer translation initiation complex is functionally distinct from but structurally overlaps with the steady-state translation initiation complex. Genes Dev. 18:745-54
    • (2004) Genes Dev. , vol.18 , pp. 745-754
    • Chiu, S.Y.1    Lejeune, F.2    Ranganathan, A.C.3    Maquat, L.E.4
  • 23
    • 0037279012 scopus 로고    scopus 로고
    • Characterization of human Smg5/7a: A protein with similarities to Caenorhabditis elegans SMG5 and SMG7 that functions in the dephosphorylation of Upf1
    • Chiu SY, Serin G, Ohara O, Maquat LE. 2003. Characterization of human Smg5/7a: a protein with similarities to Caenorhabditis elegans SMG5 and SMG7 that functions in the dephosphorylation of Upf1. RNA 9:77-87
    • (2003) RNA , vol.9 , pp. 77-87
    • Chiu, S.Y.1    Serin, G.2    Ohara, O.3    Maquat, L.E.4
  • 24
    • 84874720941 scopus 로고    scopus 로고
    • SMG5-PNRC2isfunctionally dominant compared with SMG5-SMG7 in mammalian nonsense-mediated mRNA decay
    • Cho H, Han S, Choe J, Park SG, Choi SS, Kim YK. 2013. SMG5-PNRC2isfunctionally dominant compared with SMG5-SMG7 in mammalian nonsense-mediated mRNA decay. Nucleic Acids Res. 41:1319-28
    • (2013) Nucleic Acids Res. , vol.41 , pp. 1319-1328
    • Cho, H.1    Han, S.2    Choe, J.3    Park, S.G.4    Choi, S.S.5    Kim, Y.K.6
  • 25
    • 84861461351 scopus 로고    scopus 로고
    • Staufen1-mediated mRNA decay functions in adipogenesis
    • Cho H, Kim KM, Han S, Choe J, Park SG, et al. 2012. Staufen1-mediated mRNA decay functions in adipogenesis. Mol. Cell 46:495-506
    • (2012) Mol. Cell , vol.46 , pp. 495-506
    • Cho, H.1    Kim, K.M.2    Han, S.3    Choe, J.4    Park, S.G.5
  • 26
    • 58149291462 scopus 로고    scopus 로고
    • Human proline-rich nuclear receptor coregulatory protein 2 mediates an interaction between mRNA surveillance machinery and decapping complex
    • Cho H, Kim KM, Kim YK. 2009. Human proline-rich nuclear receptor coregulatory protein 2 mediates an interaction between mRNA surveillance machinery and decapping complex. Mol. Cell 33:75-86
    • (2009) Mol. Cell , vol.33 , pp. 75-86
    • Cho, H.1    Kim, K.M.2    Kim, Y.K.3
  • 27
    • 25144466132 scopus 로고    scopus 로고
    • Intracellular protein degradation: From a vague idea, through the lysosome and the ubiquitin-proteasome system, and onto human diseases and drug targeting (Nobel lecture)
    • Ciechanover A. 2005. Intracellular protein degradation: from a vague idea, through the lysosome and the ubiquitin-proteasome system, and onto human diseases and drug targeting (Nobel lecture). Angew. Chem. Int. Ed. Engl. 44:5944-67
    • (2005) Angew. Chem. Int. Ed. Engl. , vol.44 , pp. 5944-5967
    • Ciechanover, A.1
  • 28
    • 0035146685 scopus 로고    scopus 로고
    • The co-chaperone CHIP regulates protein triage decisions mediated by heat-shock proteins
    • Connell P, Ballinger CA, Jiang J, Wu Y, Thompson LJ, et al. 2001. The co-chaperone CHIP regulates protein triage decisions mediated by heat-shock proteins. Nat. Cell Biol. 3:93-96
    • (2001) Nat. Cell Biol. , vol.3 , pp. 93-96
    • Connell, P.1    Ballinger, C.A.2    Jiang, J.3    Wu, Y.4    Thompson, L.J.5
  • 29
    • 84863856132 scopus 로고    scopus 로고
    • Nuclear translation or nuclear peptidyl transferase?
    • Dahlberg J, Lund E. 2012. Nuclear translation or nuclear peptidyl transferase? Nucleus 3:320-21
    • (2012) Nucleus , vol.3 , pp. 320-321
    • Dahlberg, J.1    Lund, E.2
  • 30
    • 0029789753 scopus 로고    scopus 로고
    • Exclusion of Int-6 from PML nuclear bodies by binding to the HTLV-I tax oncoprotein
    • Desbois C, Rousset R, Bantignies F, Jalinot P. 1996. Exclusion of Int-6 from PML nuclear bodies by binding to the HTLV-I tax oncoprotein. Science 273:951-53
    • (1996) Science , vol.273 , pp. 951-953
    • Desbois, C.1    Rousset, R.2    Bantignies, F.3    Jalinot, P.4
  • 31
    • 68449096176 scopus 로고    scopus 로고
    • Dysregulationof unfolded protein response partially underlies proapoptotic activity of bortezomib in multiple myeloma cells
    • Dong H, Chen L, Chen X, Gu H, Gao G, et al. 2009. Dysregulationof unfolded protein response partially underlies proapoptotic activity of bortezomib in multiple myeloma cells. Leuk. Lymphoma 50:974-84
    • (2009) Leuk. Lymphoma , vol.50 , pp. 974-984
    • Dong, H.1    Chen, L.2    Chen, X.3    Gu, H.4    Gao, G.5
  • 32
    • 36749042932 scopus 로고    scopus 로고
    • Translation initiation by viral internal ribosome entry sites
    • ed. MB Mathews, N Sonenberg, J Hershey Cold Spring Harboy, NY: Cold Spring Harbor Lab. Press
    • Doudna J, Sarnow P. 2007. Translation initiation by viral internal ribosome entry sites. In Translational Control in Biology and Medicine, ed. MB Mathews, N Sonenberg, J Hershey, pp. 129-54. Cold Spring Harboy, NY: Cold Spring Harbor Lab. Press
    • (2007) Translational Control in Biology and Medicine , pp. 129-154
    • Doudna, J.1    Sarnow, P.2
  • 33
    • 0041317009 scopus 로고    scopus 로고
    • Mechanism and regulation of selenoprotein synthesis
    • Driscoll DM, Copeland PR. 2003. Mechanism and regulation of selenoprotein synthesis. Annu. Rev. Nutr. 23:17-40
    • (2003) Annu. Rev. Nutr. , vol.23 , pp. 17-40
    • Driscoll, D.M.1    Copeland, P.R.2
  • 34
    • 34547625136 scopus 로고    scopus 로고
    • Inhibition of nonsensemediated mRNA decay (NMD) by a new chemical molecule reveals the dynamic of NMD factors in P-bodies
    • Durand S, Cougot N, Mahuteau-Betzer F, Nguyen CH, Grierson DS, et al. 2007. Inhibition of nonsensemediated mRNA decay (NMD) by a new chemical molecule reveals the dynamic of NMD factors in P-bodies. J. Cell Biol. 178:1145-60
    • (2007) J. Cell Biol. , vol.178 , pp. 1145-1160
    • Durand, S.1    Cougot, N.2    Mahuteau-Betzer, F.3    Nguyen, C.H.4    Grierson, D.S.5
  • 35
    • 84878945009 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay occurs during e IF4F-dependent translation in human cells
    • Durand S, Lykke-Andersen J. 2013. Nonsense-mediated mRNA decay occurs during e IF4F-dependent translation in human cells. Nat. Struct. Mol. Biol. 20:702-9
    • (2013) Nat. Struct. Mol. Biol. , vol.20 , pp. 702-709
    • Durand, S.1    Lykke-Andersen, J.2
  • 37
    • 43249093760 scopus 로고    scopus 로고
    • Posttranscriptional gene regulation by spatial rearrangement of the 3 untranslated region
    • Eberle AB, Stalder L, Mathys H, Orozco RZ, Mühlemann O. 2008. Posttranscriptional gene regulation by spatial rearrangement of the 3 untranslated region. PLoS Biol. 6:e92
    • (2008) PLoS Biol. , vol.6
    • Eberle, A.B.1    Stalder, L.2    Mathys, H.3    Orozco, R.Z.4    Mühlemann, O.5
  • 38
    • 0029616555 scopus 로고
    • Truncated WT1 mutants alter the subnuclear localization of the wild-type protein
    • Englert C, Vidal M, Maheswaran S, Ge Y, Ezzell RM, et al. 1995. Truncated WT1 mutants alter the subnuclear localization of the wild-type protein. Proc. Natl. Acad. Sci. USA 92:11960-64
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 11960-11964
    • Englert, C.1    Vidal, M.2    Maheswaran, S.3    Ge, Y.4    Ezzell, R.M.5
  • 39
    • 34347335707 scopus 로고    scopus 로고
    • P-body formation is a consequence, not the cause, of RNA-mediated gene silencing
    • Eulalio A, Behm-Ansmant I, Schweizer D, Izaurralde E. 2007. P-body formation is a consequence, not the cause, of RNA-mediated gene silencing. Mol. Cell. Biol. 27:3970-81
    • (2007) Mol. Cell. Biol. , vol.27 , pp. 3970-3981
    • Eulalio, A.1    Behm-Ansmant, I.2    Schweizer, D.3    Izaurralde, E.4
  • 40
    • 0035804228 scopus 로고    scopus 로고
    • Role of direct interaction in BRCA1 inhibition of estrogen receptor activity
    • Fan S, Ma YX, Wang C, Yuan RQ, Meng Q, et al. 2001. Role of direct interaction in BRCA1 inhibition of estrogen receptor activity. Oncogene 20:77-87
    • (2001) Oncogene , vol.20 , pp. 77-87
    • Fan, S.1    Ma, Y.X.2    Wang, C.3    Yuan, R.Q.4    Meng, Q.5
  • 41
    • 84862750546 scopus 로고    scopus 로고
    • Immunoproteasomes: Structure, function, and antigen presentation
    • Ferrington DA, Gregerson DS. 2012. Immunoproteasomes: structure, function, and antigen presentation. Prog. Mol. Biol. Transl. Sci. 109:75-112
    • (2012) Prog. Mol. Biol. Transl. Sci. , vol.109 , pp. 75-112
    • Ferrington, D.A.1    Gregerson, D.S.2
  • 42
    • 19344362627 scopus 로고    scopus 로고
    • RNA decapping inside and outside of processing bodies
    • Fillman C, Lykke-Andersen J. 2005. RNA decapping inside and outside of processing bodies. Curr. Opin. Cell Biol. 17:326-31
    • (2005) Curr. Opin. Cell Biol. , vol.17 , pp. 326-331
    • Fillman, C.1    Lykke-Andersen, J.2
  • 43
    • 84876362947 scopus 로고    scopus 로고
    • Tight intramolecular regulation of the human Upf1 helicase by its N-and C-terminal domains
    • Fiorini F, Boudvillain M, Le Hir H. 2013. Tight intramolecular regulation of the human Upf1 helicase by its N-and C-terminal domains. Nucleic Acids Res. 41:2404-15
    • (2013) Nucleic Acids Res. , vol.41 , pp. 2404-2415
    • Fiorini, F.1    Boudvillain, M.2    Le Hir, H.3
  • 44
    • 77954960062 scopus 로고    scopus 로고
    • Phenotypic robustness conferred by apparently redundant transcriptional enhancers
    • Frankel N, Davis GK, Vargas D, Wang S, Payre F, Stern DL. 2010. Phenotypic robustness conferred by apparently redundant transcriptional enhancers. Nature 466:490-93
    • (2010) Nature , vol.466 , pp. 490-493
    • Frankel, N.1    Davis, G.K.2    Vargas, D.3    Wang, S.4    Payre, F.5    Stern, D.L.6
  • 45
    • 56849103665 scopus 로고    scopus 로고
    • The control of mRNA decapping and P-body formation
    • Franks TM, Lykke-Andersen J. 2008. The control of mRNA decapping and P-body formation. Mol. Cell 32:605-15
    • (2008) Mol. Cell , vol.32 , pp. 605-615
    • Franks, T.M.1    Lykke-Andersen, J.2
  • 46
    • 78649949096 scopus 로고    scopus 로고
    • Upf1 ATPase-dependent mRNP disassembly is required for completion of nonsense-mediated mRNA decay
    • Franks TM, Singh G, Lykke-Andersen J. 2010. Upf1 ATPase-dependent mRNP disassembly is required for completion of nonsense-mediated mRNA decay. Cell 143:938-50
    • (2010) Cell , vol.143 , pp. 938-950
    • Franks, T.M.1    Singh, G.2    Lykke-Andersen, J.3
  • 48
    • 0032837376 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay in health and disease
    • Frischmeyer PA, Dietz HC. 1999. Nonsense-mediated mRNA decay in health and disease. Hum. Mol. Genet. 8:1893-900
    • (1999) Hum. Mol. Genet. , vol.8 , pp. 1893-1900
    • Frischmeyer, P.A.1    Dietz, H.C.2
  • 51
    • 77949811343 scopus 로고    scopus 로고
    • Nonsense-mediated RNA decay regulation by cellular stress: Implications for tu-morigenesis
    • Gardner LB. 2010. Nonsense-mediated RNA decay regulation by cellular stress: implications for tu-morigenesis. Mol. Cancer Res. 8:295-308
    • (2010) Mol. Cancer Res. , vol.8 , pp. 295-308
    • Gardner, L.B.1
  • 52
    • 25844512736 scopus 로고    scopus 로고
    • Exon-junction complex components specify distinct routes of nonsense-mediated mRNA decay with differential cofactor requirements
    • Gehring NH, Kunz JB, Neu-Yilik G, Breit S, Viegas MH, et al. 2005. Exon-junction complex components specify distinct routes of nonsense-mediated mRNA decay with differential cofactor requirements. Mol. Cell 20:65-75
    • (2005) Mol. Cell , vol.20 , pp. 65-75
    • Gehring, N.H.1    Kunz, J.B.2    Neu-Yilik, G.3    Breit, S.4    Viegas, M.H.5
  • 53
    • 58149520665 scopus 로고    scopus 로고
    • SMD and NMD are competitive pathways that contribute to myogenesis: Effects on PAX3 and myogenin mRNAs
    • Gong C, Kim YK, Woeller CF, Tang Y, Maquat LE. 2009. SMD and NMD are competitive pathways that contribute to myogenesis: effects on PAX3 and myogenin mRNAs. Genes Dev. 23:54-66
    • (2009) Genes Dev. , vol.23 , pp. 54-66
    • Gong, C.1    Kim, Y.K.2    Woeller, C.F.3    Tang, Y.4    Maquat, L.E.5
  • 55
    • 4944223388 scopus 로고    scopus 로고
    • Widespread predicted nonsense-mediated mRNA decay of alternatively- spliced transcripts of human normal and disease genes
    • Green RE, Lewis BP, Hillman RT, Blanchette M, Lareau LF, et al. 2003. Widespread predicted nonsense-mediated mRNA decay of alternatively-spliced transcripts of human normal and disease genes. Bioinformatics 19(Suppl. 1):i118-21
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 1
    • Green, R.E.1    Lewis, B.P.2    Hillman, R.T.3    Blanchette, M.4    Lareau, L.F.5
  • 56
    • 33751375141 scopus 로고    scopus 로고
    • Impact of nonsense-mediated mRNA decay on the global expression profile of budding yeast
    • Guan Q, Zheng W, Tang S, Liu X, Zinkel RA, et al. 2006. Impact of nonsense-mediated mRNA decay on the global expression profile of budding yeast. PLoS Genet. 2:e203
    • (2006) PLoS Genet. , vol.2
    • Guan, Q.1    Zheng, W.2    Tang, S.3    Liu, X.4    Zinkel, R.A.5
  • 57
    • 62249133709 scopus 로고    scopus 로고
    • Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
    • Guttman M, Amit I, Garber M, French C, Lin MF, et al. 2009. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 458:223-27
    • (2009) Nature , vol.458 , pp. 223-227
    • Guttman, M.1    Amit, I.2    Garber, M.3    French, C.4    Lin, M.F.5
  • 58
    • 80052869283 scopus 로고    scopus 로고
    • LincRNAs act in the circuitry controlling pluripotency and differentiation
    • Guttman M, Donaghey J, Carey BW, Garber M, Grenier JK, et al. 2011. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 477:295-300
    • (2011) Nature , vol.477 , pp. 295-300
    • Guttman, M.1    Donaghey, J.2    Carey, B.W.3    Garber, M.4    Grenier, J.K.5
  • 59
    • 0028861358 scopus 로고
    • Characterization ofcis-acting sequences and decay intermediates involved in nonsense-mediated mRNA turnover
    • Hagan KW, Ruiz-Echevarria MJ, Quan Y, Peltz SW. 1995. Characterization ofcis-acting sequences and decay intermediates involved in nonsense-mediated mRNA turnover. Mol. Cell. Biol. 15:809-23
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 809-823
    • Hagan, K.W.1    Ruiz-Echevarria, M.J.2    Quan, Y.3    Peltz, S.W.4
  • 61
    • 77955049339 scopus 로고    scopus 로고
    • Quality and quantity control at the endoplasmic reticulum
    • Hegde RS, Ploegh HL. 2010. Quality and quantity control at the endoplasmic reticulum. Curr. Opin. Cell Biol. 22:437-46
    • (2010) Curr. Opin. Cell Biol. , vol.22 , pp. 437-446
    • Hegde, R.S.1    Ploegh, H.L.2
  • 62
    • 84880604441 scopus 로고    scopus 로고
    • Take the (RN)A-train: Localization of mRNA to the endoplasmic reticulum
    • pii:S0167-4889(13)00026-8
    • Hermesh O, Jansen RP. 2013. Take the (RN)A-train: localization of mRNA to the endoplasmic reticulum. Biochim. Biophys. Acta pii:S0167-4889(13)00026-8
    • (2013) Biochim. Biophys. Acta
    • Hermesh, O.1    Jansen, R.P.2
  • 63
    • 25144443718 scopus 로고    scopus 로고
    • The ubiquitin system for protein degradation and some of its roles in the control of the cell-division cycle (Nobel lecture)
    • Hershko A. 2005. The ubiquitin system for protein degradation and some of its roles in the control of the cell-division cycle (Nobel lecture). Angew. Chem. Int. Ed. Engl. 44:5932-43
    • (2005) Angew. Chem. Int. Ed. Engl. , vol.44 , pp. 5932-5943
    • Hershko, A.1
  • 65
    • 77958459763 scopus 로고    scopus 로고
    • Upf1 senses 3 UTR length to potentiate mRNA decay
    • Hogg JR, Goff SP. 2010. Upf1 senses 3 UTR length to potentiate mRNA decay. Cell. 143:379-89
    • (2010) Cell. , vol.143 , pp. 379-389
    • Hogg, J.R.1    Goff, S.P.2
  • 66
    • 0034756104 scopus 로고    scopus 로고
    • From the cradle to the grave: Molecular chaperones that may choose between folding and degradation
    • Hohfeld J, Cyr DM, Patterson C. 2001. From the cradle to the grave: molecular chaperones that may choose between folding and degradation. EMBO Rep. 2:885-90
    • (2001) EMBO Rep. , vol.2 , pp. 885-890
    • Hohfeld, J.1    Cyr, D.M.2    Patterson, C.3
  • 67
    • 27144540254 scopus 로고    scopus 로고
    • UPF3 suppresses aberrant spliced mRNA in Arabidopsis
    • Hori K, Watanabe Y. 2005. UPF3 suppresses aberrant spliced mRNA in Arabidopsis. Plant J. 43:530-40
    • (2005) Plant J. , vol.43 , pp. 530-540
    • Hori, K.1    Watanabe, Y.2
  • 68
    • 27144478105 scopus 로고    scopus 로고
    • CBP80 promotes interaction of Upf1 with Upf2 during nonsense-mediated mRNA decay in mammalian cells
    • Hosoda N, Kim YK, Lejeune F, Maquat LE. 2005. CBP80 promotes interaction of Upf1 with Upf2 during nonsense-mediated mRNA decay in mammalian cells. Nat. Struct. Mol. Biol. 12:893-901
    • (2005) Nat. Struct. Mol. Biol. , vol.12 , pp. 893-901
    • Hosoda, N.1    Kim, Y.K.2    Lejeune, F.3    Maquat, L.E.4
  • 69
    • 76349083121 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decapping occurs on polyribosomes in Saccharomyces cerevisiae
    • Hu W, Petzold C, Coller J, Baker KE. 2010. Nonsense-mediated mRNA decapping occurs on polyribosomes in Saccharomyces cerevisiae. Nat. Struct. Mol. Biol. 17:244-47
    • (2010) Nat. Struct. Mol. Biol. , vol.17 , pp. 244-247
    • Hu, W.1    Petzold, C.2    Coller, J.3    Baker, K.E.4
  • 70
    • 80052979901 scopus 로고    scopus 로고
    • RNA homeostasis governed by cell type-specific and branched feedback loops acting on NMD
    • Huang L, Lou CH, Chan W, Shum EY, Shao A, et al. 2011. RNA homeostasis governed by cell type-specific and branched feedback loops acting on NMD. Mol. Cell 43:950-61
    • (2011) Mol. Cell , vol.43 , pp. 950-961
    • Huang, L.1    Lou, C.H.2    Chan, W.3    Shum, E.Y.4    Shao, A.5
  • 71
    • 84865405382 scopus 로고    scopus 로고
    • Inhibitors for the immuno-and constitutive proteasome: Current and future trends in drug development
    • Huber EM, Groll M. 2012. Inhibitors for the immuno-and constitutive proteasome: current and future trends in drug development. Angew. Chem. Int. Ed. Engl. 51:8708-20
    • (2012) Angew. Chem. Int. Ed. Engl. , vol.51 , pp. 8708-8720
    • Huber, E.M.1    Groll, M.2
  • 72
    • 57049126216 scopus 로고    scopus 로고
    • SMG6 is the catalytic endonuclease that cleaves mRNAs containing nonsense codons in metazoan
    • Huntzinger E, Kashima I, Fauser M, Saulière J, Izaurralde E. 2008. SMG6 is the catalytic endonuclease that cleaves mRNAs containing nonsense codons in metazoan. RNA 14:2609-17
    • (2008) RNA , vol.14 , pp. 2609-2617
    • Huntzinger, E.1    Kashima, I.2    Fauser, M.3    Saulière, J.4    Izaurralde, E.5
  • 73
    • 84885069820 scopus 로고    scopus 로고
    • Global analyses ofUPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay
    • In press
    • Hurt JA, Robertson AD, Burge CB. 2013. Global analyses ofUPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay. Genome Res. In press
    • (2013) Genome Res
    • Hurt, J.A.1    Robertson, A.D.2    Burge, C.B.3
  • 74
    • 84874706482 scopus 로고    scopus 로고
    • When a ribosome encounters a premature termination codon
    • Hwang J, Kim YK. 2013. When a ribosome encounters a premature termination codon. BMB Rep. 46:9-16
    • (2013) BMB Rep. , vol.46 , pp. 9-16
    • Hwang, J.1    Kim, Y.K.2
  • 75
    • 79960902609 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay (NMD) in animal embryogenesis: To die or not to die, that is the question
    • Hwang J, Maquat LE. 2011. Nonsense-mediated mRNA decay (NMD) in animal embryogenesis: to die or not to die, that is the question. Curr. Opin. Genet. Dev. 21:422-30
    • (2011) Curr. Opin. Genet. Dev. , vol.21 , pp. 422-430
    • Hwang, J.1    Maquat, L.E.2
  • 76
    • 77955339642 scopus 로고    scopus 로고
    • UPF1 association with the cap-binding protein, CBP80, promotes nonsense-mediated mRNA decay at two distinct steps
    • Hwang J, Sato H, Tang Y, Matsuda D, Maquat LE. 2010. UPF1 association with the cap-binding protein, CBP80, promotes nonsense-mediated mRNA decay at two distinct steps. Mol. Cell 39:396-409
    • (2010) Mol. Cell , vol.39 , pp. 396-409
    • Hwang, J.1    Sato, H.2    Tang, Y.3    Matsuda, D.4    Maquat, L.E.5
  • 77
    • 0035839002 scopus 로고    scopus 로고
    • Coupled transcription and translation within nuclei of mammalian cells
    • Iborra FJ, Jackson DA, Cook PR. 2001. Coupled transcription and translation within nuclei of mammalian cells. Science 293:1139-42
    • (2001) Science , vol.293 , pp. 1139-1142
    • Iborra, F.J.1    Jackson, D.A.2    Cook, P.R.3
  • 78
    • 34547927647 scopus 로고    scopus 로고
    • Introns play an essential role in splicing-dependent formation of the exon junction complex
    • Ideue T, Sasaki YT, Hagiwara M, Hirose T. 2007. Introns play an essential role in splicing-dependent formation of the exon junction complex. Genes Dev. 21:1993-98
    • (2007) Genes Dev. , vol.21 , pp. 1993-1998
    • Ideue, T.1    Sasaki, Y.T.2    Hagiwara, M.3    Hirose, T.4
  • 79
    • 81055155799 scopus 로고    scopus 로고
    • Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
    • Ingolia NT, Lareau LF, Weissman JS. 2011. Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell 147:789-802
    • (2011) Cell , vol.147 , pp. 789-802
    • Ingolia, N.T.1    Lareau, L.F.2    Weissman, J.S.3
  • 80
    • 41949113083 scopus 로고    scopus 로고
    • Upf1 phosphorylation triggers translational repression during nonsense-mediated mRNA decay
    • Isken O, Kim YK, Hosoda N, Mayeur GL, Hershey JW, Maquat LE. 2008. Upf1 phosphorylation triggers translational repression during nonsense-mediated mRNA decay. Cell 133:314-27
    • (2008) Cell , vol.133 , pp. 314-327
    • Isken, O.1    Kim, Y.K.2    Hosoda, N.3    Mayeur, G.L.4    Hershey, J.W.5    Maquat, L.E.6
  • 81
    • 40949148553 scopus 로고    scopus 로고
    • Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways
    • Ivanov PV, Gehring NH, Kunz JB, Hentze MW, Kulozik AE. 2008. Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways. EMBO J. 27:736-47
    • (2008) EMBO J. , vol.27 , pp. 736-747
    • Ivanov, P.V.1    Gehring, N.H.2    Kunz, J.B.3    Hentze, M.W.4    Kulozik, A.E.5
  • 82
    • 77953771590 scopus 로고    scopus 로고
    • AAA+ proteins RUVBL1 and RUVBL2 coordinate PIKK activity and function in nonsense-mediated mRNA decay
    • Izumi N, Yamashita A, Iwamatsu A, Kurata R, Nakamura H, et al. 2010. AAA+ proteins RUVBL1 and RUVBL2 coordinate PIKK activity and function in nonsense-mediated mRNA decay. Sci. Signal. 3:ra27
    • (2010) Sci. Signal. , vol.3
    • Izumi, N.1    Yamashita, A.2    Iwamatsu, A.3    Kurata, R.4    Nakamura, H.5
  • 83
    • 84873026843 scopus 로고    scopus 로고
    • An unusual arrangement of two 14-3-3-like domains in the SMG5-SMG7 heterodimer is required for efficient nonsense-mediated mRNA decay
    • Jonas S, Weichenrieder O, Izaurralde E. 2013. An unusual arrangement of two 14-3-3-like domains in the SMG5-SMG7 heterodimer is required for efficient nonsense-mediated mRNA decay. Genes Dev. 27:211-25
    • (2013) Genes Dev. , vol.27 , pp. 211-225
    • Jonas, S.1    Weichenrieder, O.2    Izaurralde, E.3
  • 85
    • 78049447110 scopus 로고    scopus 로고
    • SMG6 interacts with the exon junction complex via two conserved EJC-binding motifs (EBMs) required for nonsense-mediated mRNA decay
    • Kashima I, Jonas S, Jayachandran U, Buchwald G, Conti E, et al. 2010. SMG6 interacts with the exon junction complex via two conserved EJC-binding motifs (EBMs) required for nonsense-mediated mRNA decay. Genes Dev. 24:2440-50
    • (2010) Genes Dev. , vol.24 , pp. 2440-2450
    • Kashima, I.1    Jonas, S.2    Jayachandran, U.3    Buchwald, G.4    Conti, E.5
  • 86
    • 32044435368 scopus 로고    scopus 로고
    • Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay
    • Kashima I, Yamashita A, Izumi N, Kataoka N, Morishita R, et al. 2006. Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay. Genes Dev. 20:355-67
    • (2006) Genes Dev. , vol.20 , pp. 355-367
    • Kashima, I.1    Yamashita, A.2    Izumi, N.3    Kataoka, N.4    Morishita, R.5
  • 88
    • 84867850145 scopus 로고    scopus 로고
    • NMD: A multifaceted response to premature translational termination
    • Kervestin S, Jacobson A. 2012. NMD: a multifaceted response to premature translational termination. Nat. Rev. Mol. Cell Biol. 13:700-12
    • (2012) Nat. Rev. Mol. Cell Biol. , vol.13 , pp. 700-712
    • Kervestin, S.1    Jacobson, A.2
  • 89
    • 84862776849 scopus 로고    scopus 로고
    • Testing the faux-UTR model for NMD: Analysis of Upf1p and Pab1p competition for binding to eRF3/Sup35p
    • Kervestin S, Li C, Buckingham R, Jacobson A. 2012. Testing the faux-UTR model for NMD: analysis of Upf1p and Pab1p competition for binding to eRF3/Sup35p. Biochimie 94:1560-71
    • (2012) Biochimie , vol.94 , pp. 1560-1571
    • Kervestin, S.1    Li, C.2    Buckingham, R.3    Jacobson, A.4
  • 90
    • 0030010752 scopus 로고    scopus 로고
    • Effects of nonsense mutations on nuclear and cytoplasmic adenine phos-phoribosyltransferase RNA
    • Kessler O, Chasin LA. 1996. Effects of nonsense mutations on nuclear and cytoplasmic adenine phos-phoribosyltransferase RNA. Mol. Cell. Biol. 16:4426-35
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 4426-4435
    • Kessler, O.1    Chasin, L.A.2
  • 92
    • 0032522974 scopus 로고    scopus 로고
    • Wilms' tumor (WT1) gene mutations occur mainly in acute myeloid leukemia and may confer drug resistance
    • King-Underwood L, Pritchard-Jones K. 1998. Wilms' tumor (WT1) gene mutations occur mainly in acute myeloid leukemia and may confer drug resistance. Blood 91:2961-68
    • (1998) Blood , vol.91 , pp. 2961-2968
    • King-Underwood, L.1    Pritchard-Jones, K.2
  • 93
    • 0028941794 scopus 로고
    • Nuclear degradation of nonsense mutated ß-globin mRNA: A post-transcriptional mechanism to protect heterozygotes from severe clinical manifestations of ß-thalassemia?
    • Kugler W, Enssle J, Hentze MW, Kulozik AE. 1995. Nuclear degradation of nonsense mutated ß-globin mRNA: a post-transcriptional mechanism to protect heterozygotes from severe clinical manifestations of ß-thalassemia? Nucleic Acids Res. 23:413-18
    • (1995) Nucleic Acids Res. , vol.23 , pp. 413-418
    • Kugler, W.1    Enssle, J.2    Hentze, M.W.3    Kulozik, A.E.4
  • 94
    • 33646865949 scopus 로고    scopus 로고
    • Functions ofhUpf3aandhUpf3b in nonsense-mediated mRNA decay and translation
    • Kunz JB, Neu-Yilik G, Hentze MW, Kulozik AE, Gehring NH. 2006. Functions ofhUpf3aandhUpf3b in nonsense-mediated mRNA decay and translation. RNA 12:1015-22
    • (2006) RNA , vol.12 , pp. 1015-1022
    • Kunz, J.B.1    Neu-Yilik, G.2    Hentze, M.W.3    Kulozik, A.E.4    Gehring, N.H.5
  • 95
    • 70449108123 scopus 로고    scopus 로고
    • Upf1 stimulates degradation of the product derived from aberrant messenger RNA containing a specific nonsense mutation by the proteasome
    • Kuroha K, Tatematsu T, Inada T. 2009. Upf1 stimulates degradation of the product derived from aberrant messenger RNA containing a specific nonsense mutation by the proteasome. EMBO Rep. 10:1265-71
    • (2009) EMBO Rep. , vol.10 , pp. 1265-1271
    • Kuroha, K.1    Tatematsu, T.2    Inada, T.3
  • 96
    • 84874504687 scopus 로고    scopus 로고
    • Rules that govern UPF1 binding to mRNA 3 UTRs
    • Kurosaki T, Maquat LE. 2013. Rules that govern UPF1 binding to mRNA 3 UTRs. Proc. Natl. Acad. Sci. USA 110(9):3357-62
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , Issue.9 , pp. 3357-3362
    • Kurosaki, T.1    Maquat, L.E.2
  • 97
    • 33746224027 scopus 로고    scopus 로고
    • Applying nonsense-mediated mRNA decay research to the clinic: Progress and challenges
    • Kuzmiak HA, Maquat LE. 2006. Applying nonsense-mediated mRNA decay research to the clinic: progress and challenges. Trends Mol. Med. 12:306-16
    • (2006) Trends Mol. Med. , vol.12 , pp. 306-316
    • Kuzmiak, H.A.1    Maquat, L.E.2
  • 99
    • 77953914253 scopus 로고    scopus 로고
    • Mutations of the UPF3B gene, which encodes a protein widely expressed in neurons, are associated with nonspecific mental retardation with or without autism
    • Laumonnier F, Shoubridge C, Antar C, Nguyen LS, Van Esch H, et al. 2010. Mutations of the UPF3B gene, which encodes a protein widely expressed in neurons, are associated with nonspecific mental retardation with or without autism. Mol. Psychiatry 15:767-76
    • (2010) Mol. Psychiatry , vol.15 , pp. 767-776
    • Laumonnier, F.1    Shoubridge, C.2    Antar, C.3    Nguyen, L.S.4    Van Esch, H.5
  • 100
    • 0034672093 scopus 로고    scopus 로고
    • The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions
    • LeHir H, Izaurralde E, Maquat LE, Moore MJ. 2000. The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions. EMBO J. 19:6860-69
    • (2000) EMBO J. , vol.19 , pp. 6860-6869
    • Lehir, H.1    Izaurralde, E.2    Maquat, L.E.3    Moore, M.J.4
  • 101
    • 0141819096 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities
    • Lejeune F, Li X, Maquat LE. 2003. Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities. Mol. Cell 12:675-87
    • (2003) Mol. Cell , vol.12 , pp. 675-687
    • Lejeune, F.1    Li, X.2    Maquat, L.E.3
  • 102
    • 0032825494 scopus 로고    scopus 로고
    • Yeast Upf proteins required for RNA surveillance affect global expression of the yeast transcriptome
    • Lelivelt MJ, Culbertson MR. 1999. Yeast Upf proteins required for RNA surveillance affect global expression of the yeast transcriptome. Mol. Cell. Biol. 19:6710-19
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 6710-6719
    • Lelivelt, M.J.1    Culbertson, M.R.2
  • 103
    • 0037422575 scopus 로고    scopus 로고
    • Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
    • Lewis BP, Green RE, Brenner SE. 2003. Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans. Proc. Natl. Acad. Sci. USA 100:189-92
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 189-192
    • Lewis, B.P.1    Green, R.E.2    Brenner, S.E.3
  • 104
    • 3042616595 scopus 로고    scopus 로고
    • A membrane protein required for dislocation of misfolded proteins from the ER
    • Lilley BN, Ploegh HL. 2004. A membrane protein required for dislocation of misfolded proteins from the ER. Nature 429:834-40
    • (2004) Nature , vol.429 , pp. 834-840
    • Lilley, B.N.1    Ploegh, H.L.2
  • 105
    • 26244439658 scopus 로고    scopus 로고
    • Viral modulation of antigen presentation: Manipulation of cellular targets in the ER and beyond
    • Lilley BN, Ploegh HL. 2005. Viral modulation of antigen presentation: manipulation of cellular targets in the ER and beyond. Immunol. Rev. 207:126-44
    • (2005) Immunol. Rev. , vol.207 , pp. 126-144
    • Lilley, B.N.1    Ploegh, H.L.2
  • 106
    • 34247556560 scopus 로고    scopus 로고
    • Mechanistic insights and identification of two novel factors in the C elegans NMD pathway
    • Longman D, Plasterk RH, Johnstone IL, Cáceres JF. 2007. Mechanistic insights and identification of two novel factors in the C elegans NMD pathway. Genes Dev. 21:1075-85
    • (2007) Genes Dev. , vol.21 , pp. 1075-1085
    • Longman, D.1    Plasterk, R.H.2    Johnstone, I.L.3    Cáceres, J.F.4
  • 107
  • 108
    • 0028147091 scopus 로고
    • Low cytoplasmic mRNA levels of immunoglobulin K light chain genes containing nonsense codons correlate with inefficient splicing
    • Lozano F, Maertzdorf B, Pannell R, Milstein C. 1994. Low cytoplasmic mRNA levels of immunoglobulin K light chain genes containing nonsense codons correlate with inefficient splicing. EMBOJ. 13:4617-22
    • (1994) EMBOJ. , vol.13 , pp. 4617-4622
    • Lozano, F.1    Maertzdorf, B.2    Pannell, R.3    Milstein, C.4
  • 109
    • 0035830952 scopus 로고    scopus 로고
    • Structural origins of aminoglycoside specificity for prokaryotic ribosomes
    • Lynch SR, Puglisi JD. 2001. Structural origins of aminoglycoside specificity for prokaryotic ribosomes. J. Mol. Biol. 306:1037-58
    • (2001) J. Mol. Biol. , vol.306 , pp. 1037-1058
    • Lynch, S.R.1    Puglisi, J.D.2
  • 110
    • 0034603728 scopus 로고    scopus 로고
    • P53 splice acceptor site mutation and increased HsRAD51 protein expression in Bloom's syndrome GM1492 fibroblasts
    • Magnusson KP, Sandstrom M, Stahlberg M, Larsson M, Flygare J, et al. 2000. p53 splice acceptor site mutation and increased HsRAD51 protein expression in Bloom's syndrome GM1492 fibroblasts. Gene 246:247-54
    • (2000) Gene , vol.246 , pp. 247-254
    • Magnusson, K.P.1    Sandstrom, M.2    Stahlberg, M.3    Larsson, M.4    Flygare, J.5
  • 111
    • 80052411929 scopus 로고    scopus 로고
    • CBP80-promoted mRNP rearrangements during the pioneer round of translation, nonsense-mediated mRNA decay, and thereafter
    • Maquat LE, Hwang J, Sato H, Tang Y. 2010. CBP80-promoted mRNP rearrangements during the pioneer round of translation, nonsense-mediated mRNA decay, and thereafter. Cold Spring Harb. Symp. Quant. Biol. 75:127-34
    • (2010) Cold Spring Harb. Symp. Quant. Biol. , vol.75 , pp. 127-134
    • Maquat, L.E.1    Hwang, J.2    Sato, H.3    Tang, Y.4
  • 112
    • 0019733025 scopus 로고
    • Unstable ß-globin mRNA in mRNA-deficient beta 0 thalassemia
    • Maquat LE, Kinniburgh AJ, Rachmilewitz EA, Ross J. 1981. Unstable ß-globin mRNA in mRNA-deficient beta 0 thalassemia. Cell 27:543-53
    • (1981) Cell , vol.27 , pp. 543-553
    • Maquat, L.E.1    Kinniburgh, A.J.2    Rachmilewitz, E.A.3    Ross, J.4
  • 113
    • 0035028094 scopus 로고    scopus 로고
    • Mammalian heat shock p70 and histone H4 transcripts, which derive from naturally intronless genes, are immune to nonsense-mediated decay
    • Maquat LE, Li X. 2001. Mammalian heat shock p70 and histone H4 transcripts, which derive from naturally intronless genes, are immune to nonsense-mediated decay. RNA 7:445-56
    • (2001) RNA , vol.7 , pp. 445-456
    • Maquat, L.E.1    Li, X.2
  • 114
    • 77955326776 scopus 로고    scopus 로고
    • The pioneer round of translation: Features and functions
    • Maquat LE, Tarn WY, Isken O. 2010. The pioneer round of translation: features and functions. Cell 142:368-74
    • (2010) Cell , vol.142 , pp. 368-374
    • Maquat, L.E.1    Tarn, W.Y.2    Isken, O.3
  • 115
    • 34948854852 scopus 로고    scopus 로고
    • Failsafe nonsense-mediated mRNA decay does not detectably target eIF4E-bound m RNA
    • Matsuda D, Hosoda N, Kim YK, Maquat LE. 2007. Failsafe nonsense-mediated mRNA decay does not detectably target eIF4E-bound m RNA. Nat. Struct. Mol. Biol. 14:974-79
    • (2007) Nat. Struct. Mol. Biol. , vol.14 , pp. 974-979
    • Matsuda, D.1    Hosoda, N.2    Kim, Y.K.3    Maquat, L.E.4
  • 116
    • 84879391161 scopus 로고    scopus 로고
    • Alack of premature termination codon read-through efficacy of PTC124 (Ataluren) in a diverse array of reporter assays
    • McElroy SP, Nomura T, Torrie LS, Warbrick E, Gartner U, et al. 2013. Alack of premature termination codon read-through efficacy of PTC124 (Ataluren) in a diverse array of reporter assays. PLoS Biol. 11:e1001593
    • (2013) PLoS Biol. , vol.11
    • McElroy, S.P.1    Nomura, T.2    Torrie, L.S.3    Warbrick, E.4    Gartner, U.5
  • 117
    • 48149095822 scopus 로고    scopus 로고
    • Alternative splicing resulting in nonsense-mediated mRNA decay: What is the meaning of nonsense?
    • McGlincy NJ, Smith CW. 2008. Alternative splicing resulting in nonsense-mediated mRNA decay: What is the meaning of nonsense? Trends Biochem. Sci. 33:385-93
    • (2008) Trends Biochem. Sci. , vol.33 , pp. 385-393
    • McGlincy, N.J.1    Smith, C.W.2
  • 118
    • 38149035044 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay in yeast does not require PAB1 or a poly(A) tail
    • Meaux S, van Hoof A, Baker KE. 2008. Nonsense-mediated mRNA decay in yeast does not require PAB1 or a poly(A) tail. Mol. Cell 29:134-40
    • (2008) Mol. Cell , vol.29 , pp. 134-140
    • Meaux, S.1    Van Hoof, A.2    Baker, K.E.3
  • 119
    • 84860751669 scopus 로고    scopus 로고
    • The cryo-EM structure oftheUPF-EJC complex shows UPF1 poised toward the RNA 3 end
    • S1-2
    • Melero R, Buchwald G, Castano R, Raabe M, Gil D, et al. 2012. The cryo-EM structure oftheUPF-EJC complex shows UPF1 poised toward the RNA 3 end. Nat. Struct. Mol. Biol. 19:498-505; S1-2
    • (2012) Nat. Struct. Mol. Biol. , vol.19 , pp. 498-505
    • Melero, R.1    Buchwald, G.2    Castano, R.3    Raabe, M.4    Gil, D.5
  • 120
    • 6944256813 scopus 로고    scopus 로고
    • Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise
    • Mendell JT, Sharifi NA, Meyers JL, Martinez-Murillo F, Dietz HC. 2004. Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise. Nat. Genet. 36:1073-78
    • (2004) Nat. Genet. , vol.36 , pp. 1073-1078
    • Mendell, J.T.1    Sharifi, N.A.2    Meyers, J.L.3    Martinez-Murillo, F.4    Dietz, H.C.5
  • 121
    • 84863760251 scopus 로고    scopus 로고
    • The human T-lymphotropic virus type 1 tax protein inhibits nonsense-mediated mRNA decay by interacting with INT6/EIF3E and UPF1
    • Mocquet V, Neusiedler J, Rende F, Cluet D, Robin JP, et al. 2012. The human T-lymphotropic virus type 1 tax protein inhibits nonsense-mediated mRNA decay by interacting with INT6/EIF3E and UPF1. J. Virol. 86:7530-43
    • (2012) J. Virol. , vol.86 , pp. 7530-7543
    • Mocquet, V.1    Neusiedler, J.2    Rende, F.3    Cluet, D.4    Robin, J.P.5
  • 123
    • 0031896755 scopus 로고    scopus 로고
    • Selenium deficiency reduces the abundance of mRNA for Se-dependent glutathione peroxidase 1 by a UGA-dependent mechanism likely to be nonsense codon-mediated decay of cytoplasmic m RNA
    • Moriarty PM, Reddy CC, Maquat LE. 1998. Selenium deficiency reduces the abundance of mRNA for Se-dependent glutathione peroxidase 1 by a UGA-dependent mechanism likely to be nonsense codon-mediated decay of cytoplasmic m RNA. Mol. Cell Biol. 18:2932-39
    • (1998) Mol. Cell Biol. , vol.18 , pp. 2932-2939
    • Moriarty, P.M.1    Reddy, C.C.2    Maquat, L.E.3
  • 124
    • 74549134095 scopus 로고    scopus 로고
    • How and where are nonsense mRNAs degraded in mammalian cells?
    • Mühlemann O, Lykke-Andersen J. 2010. How and where are nonsense mRNAs degraded in mammalian cells? RNA Biol. 7:28-32
    • (2010) RNA Biol. , vol.7 , pp. 28-32
    • Mühlemann, O.1    Lykke-Andersen, J.2
  • 125
    • 79955004808 scopus 로고    scopus 로고
    • Mechanism of escape from nonsense-mediated mRNA decay of human ß-globin transcripts with nonsense mutations in the first exon
    • Neu-Yilik G, Amthor B, Gehring NH, Bahri S, Paidassi H, et al. 2011. Mechanism of escape from nonsense-mediated mRNA decay of human ß-globin transcripts with nonsense mutations in the first exon. RNA 17:843-54
    • (2011) RNA , vol.17 , pp. 843-854
    • Neu-Yilik, G.1    Amthor, B.2    Gehring, N.H.3    Bahri, S.4    Paidassi, H.5
  • 126
    • 84875947761 scopus 로고    scopus 로고
    • Contribution of copy number variants involving nonsense-mediated mRNA decay pathway genes to neuro-developmental disorders
    • Nguyen LS, Kim HG, Rosenfeld JA, Shen Y, Gusella JF, et al. 2013. Contribution of copy number variants involving nonsense-mediated mRNA decay pathway genes to neuro-developmental disorders. Hum. Mol. Genet. 22(9):1816-25
    • (2013) Hum. Mol. Genet. , vol.22 , Issue.9 , pp. 1816-1825
    • Nguyen, L.S.1    Kim, H.G.2    Rosenfeld, J.A.3    Shen, Y.4    Gusella, J.F.5
  • 127
    • 33947305594 scopus 로고    scopus 로고
    • Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay
    • Ni JZ, Grate L, Donohue JP, Preston C, Nobida N, et al. 2007. Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay. Genes Dev. 21:708-18
    • (2007) Genes Dev. , vol.21 , pp. 708-718
    • Ni, J.Z.1    Grate, L.2    Donohue, J.P.3    Preston, C.4    Nobida, N.5
  • 128
    • 78649720695 scopus 로고    scopus 로고
    • Cutting the nonsense: The degradation of PTC-containing mRNAs
    • Nicholson P, Mühlemann O. 2010. Cutting the nonsense: the degradation of PTC-containing mRNAs. Biochem. Soc. Trans. 38:1615-20
    • (2010) Biochem. Soc. Trans. , vol.38 , pp. 1615-1620
    • Nicholson, P.1    Mühlemann, O.2
  • 129
    • 84860119507 scopus 로고    scopus 로고
    • Long non-coding RNAs: Versatile master regulators of gene expression and crucial players in cancer
    • Nie L, Wu HJ, Hsu JM, Chang SS, Labaff AM, et al. 2012. Long non-coding RNAs: versatile master regulators of gene expression and crucial players in cancer. Am. J. Transl. Res. 4:127-50
    • (2012) Am. J. Transl. Res. , vol.4 , pp. 127-150
    • Nie, L.1    Wu, H.J.2    Hsu, J.M.3    Chang, S.S.4    Labaff, A.M.5
  • 131
    • 34547194577 scopus 로고    scopus 로고
    • MLN51 stimulates the RNA-helicase activity of eIF4AIII
    • Noble CG, Song H. 2007. MLN51 stimulates the RNA-helicase activity of eIF4AIII. PLoS ONE 2:e303
    • (2007) PLoS ONE , vol.2
    • Noble, C.G.1    Song, H.2
  • 132
    • 10744232514 scopus 로고    scopus 로고
    • Phosphorylation of hUPF1 induces formation of mRNA surveillance complexes containing hSMG-5 and hSMG-7
    • Ohnishi T, Yamashita A, Kashima I, Schell T, Anders KR, et al. 2003. Phosphorylation of hUPF1 induces formation of mRNA surveillance complexes containing hSMG-5 and hSMG-7. Mol. Cell 12:1187-200
    • (2003) Mol. Cell , vol.12 , pp. 1187-1200
    • Ohnishi, T.1    Yamashita, A.2    Kashima, I.3    Schell, T.4    Anders, K.R.5
  • 134
    • 84872795590 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay: From mechanistic insights to impacts on human health
    • Palacios IM. 2013. Nonsense-mediated mRNA decay: from mechanistic insights to impacts on human health. Brief Funct. Genomics 12:25-36
    • (2013) Brief Funct. Genomics , vol.12 , pp. 25-36
    • Palacios, I.M.1
  • 135
    • 77952380547 scopus 로고    scopus 로고
    • Induction of tumour immunity by targeted inhibition of nonsense-mediated mRNA decay
    • Pastor F, Kolonias D, Giangrande PH, Gilboa E. 2010. Induction of tumour immunity by targeted inhibition of nonsense-mediated mRNA decay. Nature 465:227-30
    • (2010) Nature , vol.465 , pp. 227-230
    • Pastor, F.1    Kolonias, D.2    Giangrande, P.H.3    Gilboa, E.4
  • 136
    • 84856875524 scopus 로고    scopus 로고
    • Interaction of PABPC1 with the translation initiation complex is critical to the NMD resistance of AUG-proximal nonsense mutations
    • Peixeiro I, Inácio A, Barbosa C, Silva AL, Liebhaber SA, Romão L. 2012. Interaction of PABPC1 with the translation initiation complex is critical to the NMD resistance of AUG-proximal nonsense mutations. Nucleic Acids Res. 40:1160-73
    • (2012) Nucleic Acids Res. , vol.40 , pp. 1160-1173
    • Peixeiro, I.1    Inácio, A.2    Barbosa, C.3    Silva, A.L.4    Liebhaber, S.A.5    Romão, L.6
  • 137
    • 0027219029 scopus 로고
    • MRNA destabilization triggered by premature translational termination depends on at least three cis-acting sequence elements and one trans-acting factor
    • Peltz SW, Brown AH, Jacobson A. 1993. mRNA destabilization triggered by premature translational termination depends on at least three cis-acting sequence elements and one trans-acting factor. Genes Dev. 7:1737-54
    • (1993) Genes Dev. , vol.7 , pp. 1737-1754
    • Peltz, S.W.1    Brown, A.H.2    Jacobson, A.3
  • 138
    • 84873020912 scopus 로고    scopus 로고
    • Ataluren as an agent for therapeutic nonsense suppression
    • Peltz SW, Morsy M, Welch EM, Jacobson A. 2013. Ataluren as an agent for therapeutic nonsense suppression. Annu. Rev. Med. 64:407-25
    • (2013) Annu. Rev. Med. , vol.64 , pp. 407-425
    • Peltz, S.W.1    Morsy, M.2    Welch, E.M.3    Jacobson, A.4
  • 139
    • 0036848138 scopus 로고    scopus 로고
    • The nonsensemediated mRNA decay pathway triggers degradation of most BRCA1 mRNAs bearing premature termination codons
    • Perrin-Vidoz L, Sinilnikova OM, Stoppa-Lyonnet D, Lenoir GM, Mazoyer S. 2002. The nonsensemediated mRNA decay pathway triggers degradation of most BRCA1 mRNAs bearing premature termination codons. Hum. Mol. Genet. 11:2805-14
    • (2002) Hum. Mol. Genet. , vol.11 , pp. 2805-2814
    • Perrin-Vidoz, L.1    Sinilnikova, O.M.2    Stoppa-Lyonnet, D.3    Lenoir, G.M.4    Mazoyer, S.5
  • 140
    • 78649848069 scopus 로고    scopus 로고
    • The immunoproteasome, the 20S proteasome and the PA28αβ proteasome regulator are oxidative-stress-adaptive proteolytic complexes
    • Pickering AM, Koop AL, Teoh CY, Ermak G, Grune T, Davies KJ. 2010. The immunoproteasome, the 20S proteasome and the PA28αβ proteasome regulator are oxidative-stress-adaptive proteolytic complexes. Biochem. J. 432:585-94
    • (2010) Biochem. J. , vol.432 , pp. 585-594
    • Pickering, A.M.1    Koop, A.L.2    Teoh, C.Y.3    Ermak, G.4    Grune, T.5    Davies, K.J.6
  • 142
    • 76349096255 scopus 로고    scopus 로고
    • High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans
    • Ramani AK, Nelson AC, Kapranov P, Bell I, Gingeras TR, Fraser AG. 2009. High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans. Genome Biol. 10:R101
    • (2009) Genome Biol. , vol.10
    • Ramani, A.K.1    Nelson, A.C.2    Kapranov, P.3    Bell, I.4    Gingeras, T.R.5    Fraser, A.G.6
  • 143
    • 66049162655 scopus 로고    scopus 로고
    • Execution of nonsense-mediated mRNA decay: What defines a substrate? Curr
    • Rebbapragada I, Lykke-Andersen J. 2009. Execution of nonsense-mediated mRNA decay: What defines a substrate? Curr. Opin. Cell Biol. 21:394-402
    • (2009) Opin. Cell Biol. , vol.21 , pp. 394-402
    • Rebbapragada, I.1    Lykke-Andersen, J.2
  • 144
    • 0028903902 scopus 로고
    • WT1-mediated transcriptional activation is inhibited by dominant negative mutant proteins
    • Reddy JC, Morris JC, Wang J, English MA, Haber DA, et al. 1995. WT1-mediated transcriptional activation is inhibited by dominant negative mutant proteins. J. Biol. Chem. 270:10878-84
    • (1995) J. Biol. Chem. , vol.270 , pp. 10878-10884
    • Reddy, J.C.1    Morris, J.C.2    Wang, J.3    English, M.A.4    Haber, D.A.5
  • 145
    • 25844435702 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets
    • Rehwinkel J, Letunic I, Raes J, Bork P, Izaurralde E. 2005. Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets. RNA 11:1530-44
    • (2005) RNA , vol.11 , pp. 1530-1544
    • Rehwinkel, J.1    Letunic, I.2    Raes, J.3    Bork, P.4    Izaurralde, E.5
  • 146
    • 78649750139 scopus 로고    scopus 로고
    • Regulated and quality-control mRNA turnover pathways in eukary-otes
    • Reznik B, Lykke-Andersen J. 2010. Regulated and quality-control mRNA turnover pathways in eukary-otes. Biochem. Soc. Trans. 38:1506-10
    • (2010) Biochem. Soc. Trans. , vol.38 , pp. 1506-1510
    • Reznik, B.1    Lykke-Andersen, J.2
  • 147
    • 84869065405 scopus 로고    scopus 로고
    • Design principles of protein biosynthesis-coupled quality control
    • Rodrigo-Brenni MC, Hegde RS. 2012. Design principles of protein biosynthesis-coupled quality control. Dev. Cell 23:896-907
    • (2012) Dev. Cell , vol.23 , pp. 896-907
    • Rodrigo-Brenni, M.C.1    Hegde, R.S.2
  • 148
    • 79954414554 scopus 로고    scopus 로고
    • Modeling general proteostasis: Proteome balance in health and disease
    • Roth DM, Balch WE. 2011. Modeling general proteostasis: proteome balance in health and disease. Curr. Opin. Cell Biol. 23:126-34
    • (2011) Curr. Opin. Cell Biol. , vol.23 , pp. 126-134
    • Roth, D.M.1    Balch, W.E.2
  • 149
    • 84878916831 scopus 로고    scopus 로고
    • EIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells
    • Rufener SC, Mühlemann O. 2013. eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells. Nat. Struct. Mol. Biol. 20:710-17
    • (2013) Nat. Struct. Mol. Biol. , vol.20 , pp. 710-717
    • Rufener, S.C.1    Mühlemann, O.2
  • 151
    • 46149112362 scopus 로고    scopus 로고
    • Regulation of multiple core spliceosomal proteins by alternative splicing-coupled nonsense-mediated mRNA decay
    • Saltzman AL, Kim YK, Pan Q, Fagnani MM, Maquat LE, Blencowe BJ. 2008. Regulation of multiple core spliceosomal proteins by alternative splicing-coupled nonsense-mediated mRNA decay. Mol. Cell. Biol. 28:4320-30
    • (2008) Mol. Cell. Biol. , vol.28 , pp. 4320-4330
    • Saltzman, A.L.1    Kim, Y.K.2    Pan, Q.3    Fagnani, M.M.4    Maquat, L.E.5    Blencowe, B.J.6
  • 152
    • 38649087970 scopus 로고    scopus 로고
    • Efficiency of the pioneer round of translation affects the cellular site of nonsense-mediated mRNA decay
    • Sato H, Hosoda N, Maquat LE. 2008. Efficiency of the pioneer round of translation affects the cellular site of nonsense-mediated mRNA decay. Mol. Cell 29:255-62
    • (2008) Mol. Cell , vol.29 , pp. 255-262
    • Sato, H.1    Hosoda, N.2    Maquat, L.E.3
  • 153
    • 70350639008 scopus 로고    scopus 로고
    • Remodeling of the pioneer translation initiation complex involves translation and the karyopherin importin β
    • Sato H, Maquat LE. 2009. Remodeling of the pioneer translation initiation complex involves translation and the karyopherin importin β. Genes Dev. 23:2537-50
    • (2009) Genes Dev. , vol.23 , pp. 2537-2550
    • Sato, H.1    Maquat, L.E.2
  • 155
    • 84869087484 scopus 로고    scopus 로고
    • CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex
    • Saulière J, Murigneux V, Wang Z, Marquenet E, Barbosa I, et al. 2012. CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex. Nat. Struct. Mol. Biol. 19:1124-31
    • (2012) Nat. Struct. Mol. Biol. , vol.19 , pp. 1124-1131
    • Saulière, J.1    Murigneux, V.2    Wang, Z.3    Marquenet, E.4    Barbosa, I.5
  • 156
    • 52949089292 scopus 로고    scopus 로고
    • The exosome: A multipurpose RNA-decay machine
    • Schmid M, Jensen TH. 2008. The exosome: a multipurpose RNA-decay machine. Trends Biochem. Sci. 33:501-10
    • (2008) Trends Biochem. Sci. , vol.33 , pp. 501-510
    • Schmid, M.1    Jensen, T.H.2
  • 157
    • 84872396711 scopus 로고    scopus 로고
    • Transcription-associated quality control of m RNP
    • Schmid M, Jensen TH. 2013. Transcription-associated quality control of m RNP. Biochim. Biophys. Acta 1829:158-68
    • (2013) Biochim. Biophys. Acta , vol.1829 , pp. 158-168
    • Schmid, M.1    Jensen, T.H.2
  • 158
  • 159
    • 80054041334 scopus 로고    scopus 로고
    • Membrane protein insertion at the endoplasmic reticulum
    • Shao S, Hegde RS. 2011. Membrane protein insertion at the endoplasmic reticulum. Annu. Rev. Cell Dev. Biol. 27:25-56
    • (2011) Annu. Rev. Cell Dev. Biol. , vol.27 , pp. 25-56
    • Shao, S.1    Hegde, R.S.2
  • 160
    • 84864933811 scopus 로고    scopus 로고
    • Evidence that the Upf1-related molecular motor scans the 3-UTR to ensure mRNA integrity
    • Shigeoka T, Kato S, Kawaichi M, Ishida Y. 2012. Evidence that the Upf1-related molecular motor scans the 3-UTR to ensure mRNA integrity. Nucleic Acids Res. 40:6887-97
    • (2012) Nucleic Acids Res. , vol.40 , pp. 6887-6897
    • Shigeoka, T.1    Kato, S.2    Kawaichi, M.3    Ishida, Y.4
  • 161
  • 162
    • 38949195105 scopus 로고    scopus 로고
    • Messenger RNA regulation: To translate or to degrade
    • Shyu AB, Wilkinson MF, van Hoof A. 2008. Messenger RNA regulation: to translate or to degrade. EMBOJ. 27:471-81
    • (2008) EMBOJ. , vol.27 , pp. 471-481
    • Shyu, A.B.1    Wilkinson, M.F.2    Van Hoof, A.3
  • 163
    • 0028205660 scopus 로고
    • Frameshift mutations in the v-src gene of avian sarcoma virus act in cis to specifically reduce v-src mRNA levels
    • Simpson SB, Stoltzfus CM. 1994. Frameshift mutations in the v-src gene of avian sarcoma virus act in cis to specifically reduce v-src mRNA levels. Mol. Cell. Biol. 14:1835-44
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 1835-1844
    • Simpson, S.B.1    Stoltzfus, C.M.2
  • 164
    • 84869090905 scopus 로고    scopus 로고
    • The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus
    • Singh G, Kucukural A, Cenik C, Leszyk JD, Shaffer SA, et al. 2012. The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus. Cell 151:750-64
    • (2012) Cell , vol.151 , pp. 750-764
    • Singh, G.1    Kucukural, A.2    Cenik, C.3    Leszyk, J.D.4    Shaffer, S.A.5
  • 165
    • 43249084802 scopus 로고    scopus 로고
    • A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay
    • Singh G, Rebbapragada I, Lykke-Andersen J. 2008. A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay. PLoS Biol. 6:e111
    • (2008) PLoS Biol. , vol.6
    • Singh, G.1    Rebbapragada, I.2    Lykke-Andersen, J.3
  • 166
    • 0031756336 scopus 로고    scopus 로고
    • Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5'-terminal oligopyrimidine gene family reveals common features of snoRNA host genes
    • Smith CM, Steitz JA 1998. Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5'-terminal oligopyrimidine gene family reveals common features of snoRNA host genes. Mol. Cell. Biol. 18:6897-909
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 6897-6909
    • Smith, C.M.1    Steitz, J.A.2
  • 167
    • 82255161944 scopus 로고    scopus 로고
    • Road to ruin: Targeting proteins for degradation in the endoplasmic reticulum
    • Smith MH, Ploegh HL, Weissman JS. 2011. Road to ruin: targeting proteins for degradation in the endoplasmic reticulum. Science 334:1086-90
    • (2011) Science , vol.334 , pp. 1086-1090
    • Smith, M.H.1    Ploegh, H.L.2    Weissman, J.S.3
  • 168
    • 24944591120 scopus 로고    scopus 로고
    • Gp78, a membrane-anchored ubiquitin ligase, associates with Insig-1 and couples sterol-regulated ubiquitination to degradation of HMG CoA reductase
    • Song BL, Sever N, DeBose-Boyd RA. 2005. Gp78, a membrane-anchored ubiquitin ligase, associates with Insig-1 and couples sterol-regulated ubiquitination to degradation of HMG CoA reductase. Mol. Cell 19:829-40
    • (2005) Mol. Cell , vol.19 , pp. 829-840
    • Song, B.L.1    Sever, N.2    Debose-Boyd, R.A.3
  • 169
    • 45549108749 scopus 로고    scopus 로고
    • Eukaryotic selenoprotein synthesis: Mechanistic insight incorporating new factors and new functions for old factors
    • Squires JE, Berry MJ. 2008. Eukaryotic selenoprotein synthesis: mechanistic insight incorporating new factors and new functions for old factors. Int. Union Biochem. Mol. Biol. Life 60:232-35
    • (2008) Int. Union Biochem. Mol. Biol. Life , vol.60 , pp. 232-235
    • Squires, J.E.1    Berry, M.J.2
  • 170
    • 67649307109 scopus 로고    scopus 로고
    • Processing bodies are not required for mammalian nonsense-mediated mRNA decay
    • Stalder L, Mühlemann O. 2009. Processing bodies are not required for mammalian nonsense-mediated mRNA decay. RNA 15:1265-73
    • (2009) RNA , vol.15 , pp. 1265-1273
    • Stalder, L.1    Mühlemann, O.2
  • 171
    • 0032544062 scopus 로고    scopus 로고
    • A mutated human homologue to yeast Upf1 protein has a dominant-negative effect on the decay of nonsense-containing mRNAs in mammalian cells
    • Sun X, Perlick HA, Dietz HC, Maquat LE. 1998. A mutated human homologue to yeast Upf1 protein has a dominant-negative effect on the decay of nonsense-containing mRNAs in mammalian cells. Proc. Natl. Acad. Sci. USA 95:10009-14
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 10009-10014
    • Sun, X.1    Perlick, H.A.2    Dietz, H.C.3    Maquat, L.E.4
  • 172
    • 0036546218 scopus 로고    scopus 로고
    • Dominant-negative activity of a Brca1 truncation mutant: Effects on proliferation, tumorigenicity in vivo, and chemosensitivity in a mouse ovarian cancer cell line
    • Sylvain V, Lafarge S, Bignon YJ. 2002. Dominant-negative activity of a Brca1 truncation mutant: effects on proliferation, tumorigenicity in vivo, and chemosensitivity in a mouse ovarian cancer cell line. Int. J. Oncol. 20:845-53
    • (2002) Int. J. Oncol. , vol.20 , pp. 845-853
    • Sylvain, V.1    Lafarge, S.2    Bignon, Y.J.3
  • 173
    • 50649120174 scopus 로고    scopus 로고
    • Upf1 potentially serves as a RING-related E3 ubiquitin ligase via its association with Upf3 in yeast
    • Takahashi S, Araki Y, Ohya Y, Sakuno T, Hoshino S, et al. 2008. Upf1 potentially serves as a RING-related E3 ubiquitin ligase via its association with Upf3 in yeast. RNA 14:1950-58
    • (2008) RNA , vol.14 , pp. 1950-1958
    • Takahashi, S.1    Araki, Y.2    Ohya, Y.3    Sakuno, T.4    Hoshino, S.5
  • 174
    • 84859827831 scopus 로고    scopus 로고
    • The proteasome: Molecular machinery and pathophysiological roles
    • Tanaka K, Mizushima T, Saeki Y. 2012. The proteasome: molecular machinery and pathophysiological roles. Biol. Chem. 393:217-34
    • (2012) Biol. Chem. , vol.393 , pp. 217-234
    • Tanaka, K.1    Mizushima, T.2    Saeki, Y.3
  • 175
    • 84873850861 scopus 로고    scopus 로고
    • The RNA degradation pathway regulates the function of GAS5 a non-coding RNA in mammalian cells
    • Tani H, Torimura M, Akimitsu N. 2013. The RNA degradation pathway regulates the function of GAS5 a non-coding RNA in mammalian cells. PLoS ONE 8:e55684
    • (2013) PLoS ONE , vol.8
    • Tani, H.1    Torimura, M.2    Akimitsu, N.3
  • 176
    • 34548353924 scopus 로고    scopus 로고
    • Mutations in UPF3B, a member of the nonsense-mediated mRNA decay complex, cause syndromic and nonsyndromic mental retardation
    • Tarpey PS, Raymond FL, Nguyen LS, Rodriguez J, Hackett A, et al. 2007. Mutations in UPF3B, a member of the nonsense-mediated mRNA decay complex, cause syndromic and nonsyndromic mental retardation. Nat. Genet. 39:1127-33
    • (2007) Nat. Genet. , vol.39 , pp. 1127-1133
    • Tarpey, P.S.1    Raymond, F.L.2    Nguyen, L.S.3    Rodriguez, J.4    Hackett, A.5
  • 177
    • 0032526946 scopus 로고    scopus 로고
    • Binary specification of nonsense codons by splicing and cytoplasmic translation
    • Thermann R, Neu-Yilik G, Deters A, Frede U, Wehr K, et al. 1998. Binary specification of nonsense codons by splicing and cytoplasmic translation. EMBOJ. 17:3484-94
    • (1998) EMBOJ. , vol.17 , pp. 3484-3494
    • Thermann, R.1    Neu-Yilik, G.2    Deters, A.3    Frede, U.4    Wehr, K.5
  • 178
    • 84874483832 scopus 로고    scopus 로고
    • Temporal and spatial characterization of nonsense-mediated mRNA decay
    • Trcek T, Sato H, Singer RH, Maquat LE. 2013. Temporal and spatial characterization of nonsense-mediated mRNA decay. Genes Dev. 27(5):541-51
    • (2013) Genes Dev. , vol.27 , Issue.5 , pp. 541-551
    • Trcek, T.1    Sato, H.2    Singer, R.H.3    Maquat, L.E.4
  • 179
    • 23244438013 scopus 로고    scopus 로고
    • Composition and assembly of STAT-targeting ubiquitin ligase complexes: Paramyxovirus v protein carboxyl terminus is an oligomerization domain
    • Ulane CM, Kentsis A, Cruz CD, Parisien JP, Schneider KL, Horvath CM. 2005. Composition and assembly of STAT-targeting ubiquitin ligase complexes: paramyxovirus V protein carboxyl terminus is an oligomerization domain. J. Virol. 79:10180-89
    • (2005) J. Virol. , vol.79 , pp. 10180-10189
    • Ulane, C.M.1    Kentsis, A.2    Cruz, C.D.3    Parisien, J.P.4    Schneider, K.L.5    Horvath, C.M.6
  • 180
    • 8844245615 scopus 로고    scopus 로고
    • SMG7 acts as a molecular link between mRNA surveillance and mRNA decay
    • Unterholzner L, Izaurralde E. 2004. SMG7 acts as a molecular link between mRNA surveillance and mRNA decay. Mol. Cell 16:587-96
    • (2004) Mol. Cell , vol.16 , pp. 587-596
    • Unterholzner, L.1    Izaurralde, E.2
  • 181
    • 0024349521 scopus 로고
    • Nonsense mutations in the dihydrofolate reductase gene affect RNA processing
    • Urlaub G, Mitchell PJ, Ciudad CJ, Chasin LA. 1989. Nonsense mutations in the dihydrofolate reductase gene affect RNA processing. Mol. Cell. Biol. 9:2868-80
    • (1989) Mol. Cell. Biol. , vol.9 , pp. 2868-2880
    • Urlaub, G.1    Mitchell, P.J.2    Ciudad, C.J.3    Chasin, L.A.4
  • 182
    • 17644446909 scopus 로고    scopus 로고
    • Restoration of p53 gene function in 12-O-tetradecanoylphorbor 13-acetate-resistant human leukemia K562/TPA cells
    • Usuda J, Inomata M, Fukumoto H, Iwamoto Y, Suzuki T, et al. 2003. Restoration of p53 gene function in 12-O-tetradecanoylphorbor 13-acetate-resistant human leukemia K562/TPA cells. Int. J. Oncol. 22:81-86
    • (2003) Int. J. Oncol. , vol.22 , pp. 81-86
    • Usuda, J.1    Inomata, M.2    Fukumoto, H.3    Iwamoto, Y.4    Suzuki, T.5
  • 183
    • 0002027029 scopus 로고
    • A new evolutionary law
    • Van Valen L. 1973. A new evolutionary law. Evol. Theory 1:1-30
    • (1973) Evol. Theory , vol.1 , pp. 1-30
    • Van Valen, L.1
  • 184
    • 34547838641 scopus 로고    scopus 로고
    • The abundance of RNPS1, a protein component of the exon junction complex, can determine the variability in efficiency of the nonsense mediated decay pathway
    • Viegas MH, Gehring NH, Breit S, Hentze MW, Kulozik AE. 2007. The abundance of RNPS1, a protein component of the exon junction complex, can determine the variability in efficiency of the nonsense mediated decay pathway. Nucleic Acids Res. 35:4542-51
    • (2007) Nucleic Acids Res. , vol.35 , pp. 4542-4551
    • Viegas, M.H.1    Gehring, N.H.2    Breit, S.3    Hentze, M.W.4    Kulozik, A.E.5
  • 185
    • 33745192054 scopus 로고    scopus 로고
    • The nuclear ubiquitin-proteasome system
    • vonMikecz A. 2006. The nuclear ubiquitin-proteasome system. J. Cell Sci. 119:1977-84
    • (2006) J. Cell Sci. , vol.119 , pp. 1977-1984
    • Vonmikecz, A.1
  • 186
  • 187
    • 82255173966 scopus 로고    scopus 로고
    • The unfolded protein response: From stress pathway to homeostatic regulation
    • Walter P, Ron D. 2011. The unfolded protein response: from stress pathway to homeostatic regulation. Science 334:1081-86
    • (2011) Science , vol.334 , pp. 1081-1086
    • Walter, P.1    Ron, D.2
  • 188
    • 81155126104 scopus 로고    scopus 로고
    • Overexpression of the c-myc oncogene inhibits nonsense-mediated RNA decay in B lymphocytes
    • Wang D, Wengrod J, Gardner LB. 2011. Overexpression of the c-myc oncogene inhibits nonsense-mediated RNA decay in B lymphocytes. J. Biol. Chem. 286:40038-43
    • (2011) J. Biol. Chem. , vol.286 , pp. 40038-40043
    • Wang, D.1    Wengrod, J.2    Gardner, L.B.3
  • 189
    • 80052331341 scopus 로고    scopus 로고
    • Inhibition of nonsense-mediated RNA decay by the tumor microenvironment promotes tumorigenesis
    • Wang D, Zavadil J, Martin L, Parisi F, Friedman E, et al. 2011. Inhibition of nonsense-mediated RNA decay by the tumor microenvironment promotes tumorigenesis. Mol. Cell. Biol. 31:3670-80
    • (2011) Mol. Cell. Biol. , vol.31 , pp. 3670-3680
    • Wang, D.1    Zavadil, J.2    Martin, L.3    Parisi, F.4    Friedman, E.5
  • 190
    • 33750842131 scopus 로고    scopus 로고
    • Hsp90 cochaperone Aha1 down-regulation rescues misfolding of CFTRin cystic fibrosis
    • Wang X, Venable J, LaPointe P, Hutt DM, Koulov AV, et al. 2006. Hsp90 cochaperone Aha1 down-regulation rescues misfolding of CFTRin cystic fibrosis. Cell 127:803-15
    • (2006) Cell , vol.127 , pp. 803-815
    • Wang, X.1    Venable, J.2    Lapointe, P.3    Hutt, D.M.4    Koulov, A.V.5
  • 191
    • 29844451724 scopus 로고    scopus 로고
    • A 3 UTR sequence stabilizes termination codons in the unspliced RNA of Rous sarcoma virus
    • Weil JE, Beemon KL. 2006. A 3 UTR sequence stabilizes termination codons in the unspliced RNA of Rous sarcoma virus. RNA 12:102-10
    • (2006) RNA , vol.12 , pp. 102-110
    • Weil, J.E.1    Beemon, K.L.2
  • 192
    • 60049088883 scopus 로고    scopus 로고
    • Structural characterization of the Rous sarcoma virus RNA stability element
    • Weil JE, Hadjithomas M, Beemon KL. 2009. Structural characterization of the Rous sarcoma virus RNA stability element. J. Virol. 83:2119-29
    • (2009) J. Virol. , vol.83 , pp. 2119-2129
    • Weil, J.E.1    Hadjithomas, M.2    Beemon, K.L.3
  • 193
    • 34247588271 scopus 로고    scopus 로고
    • PTC124 targets genetic disorders caused by nonsense mutations
    • Welch EM, Barton ER, Zhuo J, Tomizawa Y, Friesen WJ, et al. 2007. PTC124 targets genetic disorders caused by nonsense mutations. Nature 447:87-91
    • (2007) Nature , vol.447 , pp. 87-91
    • Welch, E.M.1    Barton, E.R.2    Zhuo, J.3    Tomizawa, Y.4    Friesen, W.J.5
  • 196
    • 0031912860 scopus 로고    scopus 로고
    • Assessment of sequence-based p53 gene analysis in human breast cancer: Messenger RNA in comparison with genomic DNA targets
    • Williams C, Norberg T, Ahmadian A, Ponten F, Bergh J, et al. 1998. Assessment of sequence-based p53 gene analysis in human breast cancer: messenger RNA in comparison with genomic DNA targets. Clin. Chem. 44:455-62
    • (1998) Clin. Chem. , vol.44 , pp. 455-462
    • Williams, C.1    Norberg, T.2    Ahmadian, A.3    Ponten, F.4    Bergh, J.5
  • 197
    • 79251475891 scopus 로고    scopus 로고
    • Nonsense mediated decay resistant mutations are a source of expressed mutant proteins in colon cancer cell lines with microsatellite instability
    • Williams DS, Bird MJ, Jorissen RN, Yu YL, Walker F, et al. 2010. Nonsense mediated decay resistant mutations are a source of expressed mutant proteins in colon cancer cell lines with microsatellite instability. PLoS ONE 5:e16012
    • (2010) PLoS ONE , vol.5
    • Williams, D.S.1    Bird, M.J.2    Jorissen, R.N.3    Yu, Y.L.4    Walker, F.5
  • 198
    • 0141863491 scopus 로고    scopus 로고
    • Gentamicin-induced correction of CFTR function in patients with cystic fibrosis and CFTR stop mutations
    • Wilschanski M, Yahav Y, Yaacov Y, Blau H, Bentur L, et al. 2003. Gentamicin-induced correction of CFTR function in patients with cystic fibrosis and CFTR stop mutations. N Engl. J. Med. 349:1433-41
    • (2003) N Engl. J. Med. , vol.349 , pp. 1433-1441
    • Wilschanski, M.1    Yahav, Y.2    Yaacov, Y.3    Blau, H.4    Bentur, L.5
  • 199
    • 80055011827 scopus 로고    scopus 로고
    • The structure and function of the rous sarcoma virus RNA stability element
    • Withers JB, Beemon KL. 2011. The structure and function of the rous sarcoma virus RNA stability element.J. Cell. Biochem. 112:3085-92
    • (2011) J. Cell. Biochem. , vol.112 , pp. 3085-3092
    • Withers, J.B.1    Beemon, K.L.2
  • 200
    • 32044454232 scopus 로고    scopus 로고
    • HUPF2 silencing identifies physiologic substrates of mammalian nonsense-mediated mRNA decay
    • Wittmann J, Hol EM, Jack HM. 2006. hUPF2 silencing identifies physiologic substrates of mammalian nonsense-mediated mRNA decay. Mol. Cell. Biol. 26:1272-87
    • (2006) Mol. Cell. Biol. , vol.26 , pp. 1272-1287
    • Wittmann, J.1    Hol, E.M.2    Jack, H.M.3
  • 201
    • 79951483258 scopus 로고    scopus 로고
    • Structure, assembly and homeostatic regulation of the 26S proteasome
    • Xie Y. 2010. Structure, assembly and homeostatic regulation of the 26S proteasome. J. Mol. Cell Biol. 2:308-17
    • (2010) J. Mol. Cell Biol. , vol.2 , pp. 308-317
    • Xie, Y.1
  • 202
    • 65449178454 scopus 로고    scopus 로고
    • SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay
    • Yamashita A, Izumi N, Kashima I, Ohnishi T, Saari B, et al. 2009. SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay. Genes Dev. 23:1091-105
    • (2009) Genes Dev. , vol.23 , pp. 1091-1105
    • Yamashita, A.1    Izumi, N.2    Kashima, I.3    Ohnishi, T.4    Saari, B.5
  • 203
    • 0035449691 scopus 로고    scopus 로고
    • Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay
    • Yamashita A, Ohnishi T, Kashima I, Taya Y, Ohno S. 2001. Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay. Genes Dev. 15:2215-28
    • (2001) Genes Dev. , vol.15 , pp. 2215-2228
    • Yamashita, A.1    Ohnishi, T.2    Kashima, I.3    Taya, Y.4    Ohno, S.5
  • 205
    • 33745112583 scopus 로고    scopus 로고
    • The lba1 mutation of UPF1 RNA helicase involved in nonsense-mediated mRNA decay causes pleiotropic phenotypic changes and altered sugar signalling in Arabidopsis
    • Yoine M, Ohto MA, Onai K, Mita S, Nakamura K. 2006. The lba1 mutation of UPF1 RNA helicase involved in nonsense-mediated mRNA decay causes pleiotropic phenotypic changes and altered sugar signalling in Arabidopsis. Plant J. 47:49-62
    • (2006) Plant J. , vol.47 , pp. 49-62
    • Yoine, M.1    Ohto, M.A.2    Onai, K.3    Mita, S.4    Nakamura, K.5
  • 206
    • 0031046735 scopus 로고    scopus 로고
    • Evidence that translation reinitiation abrogates nonsense-mediated mRNA decay in mammalian cells
    • Zhang J, Maquat LE. 1997. Evidence that translation reinitiation abrogates nonsense-mediated mRNA decay in mammalian cells. EMBOJ. 16:826-33
    • (1997) EMBOJ. , vol.16 , pp. 826-833
    • Zhang, J.1    Maquat, L.E.2
  • 207
    • 0031840487 scopus 로고    scopus 로고
    • At least one intron is required for the nonsense-mediated decay of triosephosphate isomerase mRNA: A possible link between nuclear splicing and cytoplasmic translation
    • Zhang J, Sun X, Qian Y, LaDuca JP, Maquat LE. 1998. At least one intron is required for the nonsense-mediated decay of triosephosphate isomerase mRNA: a possible link between nuclear splicing and cytoplasmic translation. Mol. Cell. Biol. 18:5272-83
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 5272-5283
    • Zhang, J.1    Sun, X.2    Qian, Y.3    Laduca, J.P.4    Maquat, L.E.5
  • 208
    • 0031870169 scopus 로고    scopus 로고
    • Intron function in the nonsense-mediated decay of ß-globin mRNA: Indications that pre-mRNA splicing in the nucleus can influence mRNA translation in the cytoplasm
    • Zhang J, Sun X, Qian Y, Maquat LE. 1998. Intron function in the nonsense-mediated decay of ß-globin mRNA: indications that pre-mRNA splicing in the nucleus can influence mRNA translation in the cytoplasm. RNA 4:801-15
    • (1998) RNA , vol.4 , pp. 801-815
    • Zhang, J.1    Sun, X.2    Qian, Y.3    Maquat, L.E.4
  • 209
    • 84881477715 scopus 로고    scopus 로고
    • Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3 UTRs
    • Zünd D, Gruber AR, Zavolan M, Mühlemann O. 2013. Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3 UTRs. Nat. Struct. Mol. Biol. 20:936-43
    • (2013) Nat. Struct. Mol. Biol. , vol.20 , pp. 936-943
    • Zünd, D.1    Gruber, A.R.2    Zavolan, M.3    Mühlemann, O.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.