메뉴 건너뛰기




Volumn 43, Issue 4, 2005, Pages 530-540

UPF3 suppresses aberrant spliced mRNA in Arabidopsis

Author keywords

Aberrant mRNA; Alternative splicing; mRNA surveillance; Nonsense mediated decay; Post transcriptional regulation; Premature termination codon

Indexed keywords

AMINO ACIDS; GENES; PROTEINS; RNA; YEAST;

EID: 27144540254     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2005.02473.x     Document Type: Article
Times cited : (124)

References (44)
  • 1
    • 0042768158 scopus 로고    scopus 로고
    • Genome-wide insertional mutagenesis of Arabidopsis thaliana
    • Alonso, J.M., Stepanova, A.N., Leisse, T.J. et al. (2003) Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science, 301, 653-657.
    • (2003) Science , vol.301 , pp. 653-657
    • Alonso, J.M.1    Stepanova, A.N.2    Leisse, T.J.3
  • 2
    • 0035795577 scopus 로고    scopus 로고
    • Molecular identification of smg-4, required for mRNA surveillance in C. elegans
    • Aronoff, R., Baran, R. and Hodgkin, J. (2001) Molecular identification of smg-4, required for mRNA surveillance in C. elegans. Gene, 268, 153-164.
    • (2001) Gene , vol.268 , pp. 153-164
    • Aronoff, R.1    Baran, R.2    Hodgkin, J.3
  • 3
    • 9144257886 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Bateman, A., Coin, L., Durbin, R. et al. (2004) The Pfam protein families database. Nucleic Acids Res. 32(Database issue), D138-D141.
    • (2004) Nucleic Acids Res. , vol.32 , Issue.DATABASE ISSUE
    • Bateman, A.1    Coin, L.2    Durbin, R.3
  • 4
    • 0028884942 scopus 로고
    • A regulatory mechanism that detects premature nonsense codons in T-cell receptor transcripts in vivo is reversed by protein synthesis inhibitors in vitro
    • Carter, M.S., Doskow, J., Morris, P., Li, S., Nhim, R.P., Sandstedt, S. and Wilkinson, M.F. (1995) A regulatory mechanism that detects premature nonsense codons in T-cell receptor transcripts in vivo is reversed by protein synthesis inhibitors in vitro. J. Biol. Chem. 270, 28995-29003.
    • (1995) J. Biol. Chem. , vol.270 , pp. 28995-29003
    • Carter, M.S.1    Doskow, J.2    Morris, P.3    Li, S.4    Nhim, R.P.5    Sandstedt, S.6    Wilkinson, M.F.7
  • 5
    • 0037382643 scopus 로고    scopus 로고
    • Looking at mRNA decay pathways through the window of molecular evolution
    • Culbertson, M.R. and Leeds, P.F. (2003) Looking at mRNA decay pathways through the window of molecular evolution. Curr. Opin. Genet. Dev. 13, 207-214.
    • (2003) Curr. Opin. Genet. Dev. , vol.13 , pp. 207-214
    • Culbertson, M.R.1    Leeds, P.F.2
  • 7
    • 0034652218 scopus 로고    scopus 로고
    • Alternatively spliced N resistance gene transcripts: Their possible role in tobacco mosaic virus resistance
    • Dinesh-Kumar, S.P. and Baker, B.J. (2000) Alternatively spliced N resistance gene transcripts: their possible role in tobacco mosaic virus resistance. Proc. Natl Acad. Sci. USA, 97, 1908-1913.
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 1908-1913
    • Dinesh-Kumar, S.P.1    Baker, B.J.2
  • 8
    • 0037443035 scopus 로고    scopus 로고
    • Pre-mRNA splicing and human disease
    • Faustino, N.A. and Cooper, T.A. (2003) Pre-mRNA splicing and human disease. Genes Dev. 17, 419-437.
    • (2003) Genes Dev. , vol.17 , pp. 419-437
    • Faustino, N.A.1    Cooper, T.A.2
  • 9
    • 0042025014 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay in Drosophila: At the intersection of the yeast and mammalian pathways
    • Gatfield, D., Unterholzner, L., Ciccarelli, F.D., Bork, P. and Izaurralde, E. (2003) Nonsense-mediated mRNA decay in Drosophila: at the intersection of the yeast and mammalian pathways. EMBO J. 22, 3960-3970.
    • (2003) EMBO J. , vol.22 , pp. 3960-3970
    • Gatfield, D.1    Unterholzner, L.2    Ciccarelli, F.D.3    Bork, P.4    Izaurralde, E.5
  • 10
    • 0035934166 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay in Saccharomyces cerevisiae
    • Gonzalez, C.I., Bhattacharya, A., Wang, W. and Peltz, S.W. (2001) Nonsense-mediated mRNA decay in Saccharomyces cerevisiae. Gene, 274, 15-25.
    • (2001) Gene , vol.274 , pp. 15-25
    • Gonzalez, C.I.1    Bhattacharya, A.2    Wang, W.3    Peltz, S.W.4
  • 11
    • 4944223388 scopus 로고    scopus 로고
    • Widespread predicted nonsense-mediated mRNA decay of alternatively- spliced transcripts of human normal and disease genes
    • Green, R.E., Lewis, B.P., Hillman, R.T., Blanchette, M., Lareau, L.F., Garnett, A.T., Rio, D.C. and Brenner, S.E. (2003) Widespread predicted nonsense-mediated mRNA decay of alternatively-spliced transcripts of human normal and disease genes. Bioinformatics, 19(Suppl. 1), I118-I121.
    • (2003) Bioinformatics , vol.19 , Issue.1 SUPPL.
    • Green, R.E.1    Lewis, B.P.2    Hillman, R.T.3    Blanchette, M.4    Lareau, L.F.5    Garnett, A.T.6    Rio, D.C.7    Brenner, S.E.8
  • 12
    • 0033101716 scopus 로고    scopus 로고
    • Stochastic and nonstochastic post-transcriptional silencing of chitinase and beta-1,3-glucanase genes involves increased RNA turnover-possible role for ribosome-independent RNA degradation
    • Holtorf, H., Schob, H., Kunz, C., Waldvogel, R. and Meins, F. Jr (1999) Stochastic and nonstochastic post-transcriptional silencing of chitinase and beta-1,3-glucanase genes involves increased RNA turnover-possible role for ribosome-independent RNA degradation. Plant Cell, 11, 471-484.
    • (1999) Plant Cell , vol.11 , pp. 471-484
    • Holtorf, H.1    Schob, H.2    Kunz, C.3    Waldvogel, R.4    Meins Jr., F.5
  • 13
    • 0030238338 scopus 로고    scopus 로고
    • Premature nonsense codons decrease the stability of phytohemagglutinin mRNA in a position-dependent manner
    • van Hoof, A. and Green, P.J. (1996) Premature nonsense codons decrease the stability of phytohemagglutinin mRNA in a position-dependent manner. Plant J. 10, 415-424.
    • (1996) Plant J. , vol.10 , pp. 415-424
    • Van Hoof, A.1    Green, P.J.2
  • 14
    • 4844222571 scopus 로고    scopus 로고
    • Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences
    • Iida, K., Seki, M., Sakurai, T., Satou, M., Akiyama, K., Toyoda, T., Konagaya, A. and Shinozaki, K. (2004) Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences. Nucleic Acids Res. 32, 5096-5103.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 5096-5103
    • Iida, K.1    Seki, M.2    Sakurai, T.3    Satou, M.4    Akiyama, K.5    Toyoda, T.6    Konagaya, A.7    Shinozaki, K.8
  • 15
    • 0035099557 scopus 로고    scopus 로고
    • Nonsense-mediated decay of mutant waxy mRNA in rice
    • Isshiki, M., Yamamoto, Y., Satoh, H. and Shimamoto, K. (2001) Nonsense-mediated decay of mutant waxy mRNA in rice. Plant Physiol. 125, 1388-1395.
    • (2001) Plant Physiol. , vol.125 , pp. 1388-1395
    • Isshiki, M.1    Yamamoto, Y.2    Satoh, H.3    Shimamoto, K.4
  • 16
    • 0024655993 scopus 로고
    • A frameshift mutation prevents Kunitz trypsin inhibitor mRNA accumulation in soybean embryos
    • Jofuku, K.D., Schipper, R.D. and Goldberg, R.B. (1989) A frameshift mutation prevents Kunitz trypsin inhibitor mRNA accumulation in soybean embryos. Plant Cell, 1, 427-435.
    • (1989) Plant Cell , vol.1 , pp. 427-435
    • Jofuku, K.D.1    Schipper, R.D.2    Goldberg, R.B.3
  • 17
    • 0141907362 scopus 로고    scopus 로고
    • Decay kinetics of autogenously regulated CGS1 mRNA that codes for cystathionine gamma-synthase in Arabidopsis thaliana
    • Lambein, I., Chiba, Y., Onouchi, H. and Naito, S. (2003) Decay kinetics of autogenously regulated CGS1 mRNA that codes for cystathionine gamma-synthase in Arabidopsis thaliana. Plant Cell Physiol. 44, 893-900.
    • (2003) Plant Cell Physiol. , vol.44 , pp. 893-900
    • Lambein, I.1    Chiba, Y.2    Onouchi, H.3    Naito, S.4
  • 18
    • 0028862895 scopus 로고
    • Identification of an additional gene required for eukaryotic nonsense mRNA turnover
    • Lee, B.S. and Culbertson, M.R. (1995) Identification of an additional gene required for eukaryotic nonsense mRNA turnover. Proc. Natl Acad. Sci. USA, 92, 10354-10358.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 10354-10358
    • Lee, B.S.1    Culbertson, M.R.2
  • 19
    • 0032825494 scopus 로고    scopus 로고
    • Yeast Upf proteins required for RNA surveillance affect global expression of the yeast transcriptome
    • Lelivelt, M.J. and Culbertson, M.R. (1999) Yeast Upf proteins required for RNA surveillance affect global expression of the yeast transcriptome. Mol. Cell Biol. 19, 6710-6719.
    • (1999) Mol. Cell Biol. , vol.19 , pp. 6710-6719
    • Lelivelt, M.J.1    Culbertson, M.R.2
  • 20
    • 0029360727 scopus 로고
    • Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR
    • Liu, Y.G., Mitsukawa, N., Oosumi, T. and Whittier, R.F. (1995) Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J. 8, 457-463.
    • (1995) Plant J. , vol.8 , pp. 457-463
    • Liu, Y.G.1    Mitsukawa, N.2    Oosumi, T.3    Whittier, R.F.4
  • 21
    • 0034704201 scopus 로고    scopus 로고
    • Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon
    • Lykke-Andersen, J., Shu, M.D. and Steitz, J.A. (2000) Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon. Cell, 103, 1121-1131.
    • (2000) Cell , vol.103 , pp. 1121-1131
    • Lykke-Andersen, J.1    Shu, M.D.2    Steitz, J.A.3
  • 22
    • 0035500594 scopus 로고    scopus 로고
    • Stop making nonsense: The C. elegans smg genes
    • Mango, S.E. (2001) Stop making nonsense: the C. elegans smg genes. Trends Genet. 17, 646-653.
    • (2001) Trends Genet. , vol.17 , pp. 646-653
    • Mango, S.E.1
  • 23
    • 0742323558 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay: Splicing, translation and mRNP dynamics
    • Maquat, L.E. (2004) Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics. Natl Rev. Mol. Cell Biol. 5, 89-99.
    • (2004) Natl Rev. Mol. Cell Biol. , vol.5 , pp. 89-99
    • Maquat, L.E.1
  • 24
    • 0032005083 scopus 로고    scopus 로고
    • The Arabidopsis AUX1 gene: A model system to study mRNA processing in plants
    • Marchant, A. and Bennett, M.J. (1998) The Arabidopsis AUX1 gene: a model system to study mRNA processing in plants. Plant Mol. Biol. 36, 463-471.
    • (1998) Plant Mol. Biol. , vol.36 , pp. 463-471
    • Marchant, A.1    Bennett, M.J.2
  • 25
    • 3242876311 scopus 로고    scopus 로고
    • BLAST: At the core of a powerful and diverse set of sequence analysis tools
    • McGinnis, S. and Madden, T.L. (2004) BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res. 32, W20-W25.
    • (2004) Nucleic Acids Res. , vol.32
    • McGinnis, S.1    Madden, T.L.2
  • 26
    • 0035393343 scopus 로고    scopus 로고
    • Genome-wide detection of alternative splicing in expressed sequences of human genes
    • Modrek, B., Resch, A., Grasso, C. and Lee, C. (2001) Genome-wide detection of alternative splicing in expressed sequences of human genes. Nucleic Acids Res. 29, 2850-2859.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2850-2859
    • Modrek, B.1    Resch, A.2    Grasso, C.3    Lee, C.4
  • 27
    • 2442436981 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay: From vacuum cleaner to Swiss army knife
    • Neu-Yilik, G., Gehring, N.H., Hentze, M.W. and Kulozik, A.E. (2004) Nonsense-mediated mRNA decay: from vacuum cleaner to Swiss army knife. Genome Biol. 5, 218.
    • (2004) Genome Biol. , vol.5 , pp. 218
    • Neu-Yilik, G.1    Gehring, N.H.2    Hentze, M.W.3    Kulozik, A.E.4
  • 28
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • Page, R.D. (1996) TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12, 357-358.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.1
  • 29
    • 0033996462 scopus 로고    scopus 로고
    • Premature termination codons destabilize ferredoxin-1 mRNA when ferredoxin-1 is translated
    • Petracek, M.E., Nuygen, T., Thompson, W.F. and Dickey, L.F. (2000) Premature termination codons destabilize ferredoxin-1 mRNA when ferredoxin-1 is translated. Plant J. 21, 563-569.
    • (2000) Plant J. , vol.21 , pp. 563-569
    • Petracek, M.E.1    Nuygen, T.2    Thompson, W.F.3    Dickey, L.F.4
  • 30
    • 6944222929 scopus 로고    scopus 로고
    • Plant serine/arginine-rich proteins and their role in pre-mRNA splicing
    • Reddy, A.S. (2004) Plant serine/arginine-rich proteins and their role in pre-mRNA splicing. Trends Plant Sci. 9, 541-547.
    • (2004) Trends Plant Sci. , vol.9 , pp. 541-547
    • Reddy, A.S.1
  • 31
    • 13244251332 scopus 로고    scopus 로고
    • Two point mutations identified in emmer wheat generate null Wx-A1 alleles
    • Saito, M. and Nakamura, T. (2004) Two point mutations identified in emmer wheat generate null Wx-A1 alleles. Theor. Appl. Genet, 110, 276-282.
    • (2004) Theor. Appl. Genet , vol.110 , pp. 276-282
    • Saito, M.1    Nakamura, T.2
  • 32
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 33
    • 0037394416 scopus 로고    scopus 로고
    • Alternative splicing modulation by a LAMMER kinase impinges on developmental and transcriptome expression
    • Savaldi-Goldstein, S., Aviv, D., Davydov, O. and Fluhr, R. (2003) Alternative splicing modulation by a LAMMER kinase impinges on developmental and transcriptome expression. Plant Cell, 15, 926-938.
    • (2003) Plant Cell , vol.15 , pp. 926-938
    • Savaldi-Goldstein, S.1    Aviv, D.2    Davydov, O.3    Fluhr, R.4
  • 34
    • 20244377471 scopus 로고    scopus 로고
    • Functional annotation of a full-length Arabidopsis cDNA collection
    • Seki, M., Narusaka, M., Kamiya, A. et al. (2002) Functional annotation of a full-length Arabidopsis cDNA collection. Science, 296, 141-145.
    • (2002) Science , vol.296 , pp. 141-145
    • Seki, M.1    Narusaka, M.2    Kamiya, A.3
  • 35
    • 0026014804 scopus 로고
    • An efficient method for isolation of RNA from tissue cultured plant cells
    • Shirzadegan, M., Chrisitie, P. and Seemann, J.R. (1991) An efficient method for isolation of RNA from tissue cultured plant cells. Nucleic Acids Res. 19, 6055.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 6055
    • Shirzadegan, M.1    Chrisitie, P.2    Seemann, J.R.3
  • 36
    • 0642306396 scopus 로고    scopus 로고
    • New insights into the formation of active nonsense-mediated decay complexes
    • Singh, G. and Lykke Andersen, J. (2003) New insights into the formation of active nonsense-mediated decay complexes. Trends Biochem. Sci. 28, 464-466.
    • (2003) Trends Biochem. Sci. , vol.28 , pp. 464-466
    • Singh, G.1    Lykke Andersen, J.2
  • 37
    • 0037266853 scopus 로고    scopus 로고
    • The circadian clock regulated RNA-binding protein AtGRP7 autoregulates its expression by influencing alternative splicing of its own pre-mRNA
    • Staiger, D., Zecca, L., Wieczorek Kirk, D.A., Apel, K. and Eckstein, L. (2003) The circadian clock regulated RNA-binding protein AtGRP7 autoregulates its expression by influencing alternative splicing of its own pre-mRNA. Plant J. 33, 361-371.
    • (2003) Plant J. , vol.33 , pp. 361-371
    • Staiger, D.1    Zecca, L.2    Wieczorek Kirk, D.A.3    Apel, K.4    Eckstein, L.5
  • 38
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 40
    • 0036677083 scopus 로고    scopus 로고
    • mRNA surveillance: The perfect persist
    • Wagner, E. and Lykke-Andersen, J. (2002) mRNA surveillance: the perfect persist. J. Cell Sci. 115, 3033-3038.
    • (2002) J. Cell Sci. , vol.115 , pp. 3033-3038
    • Wagner, E.1    Lykke-Andersen, J.2
  • 41
    • 0036300610 scopus 로고    scopus 로고
    • RNA surveillance by nuclear scanning?
    • Wilkinson, M.F. and Shyu, A.B. (2002) RNA surveillance by nuclear scanning? Natl Cell Biol. 4, E144-E147.
    • (2002) Natl Cell Biol , vol.4
    • Wilkinson, M.F.1    Shyu, A.B.2
  • 42
    • 0035498978 scopus 로고    scopus 로고
    • Curbing the nonsense: The activation and regulation of mRNA surveillance
    • Wilusz, C.J., Wang, W. and Peltz, S.W. (2001) Curbing the nonsense: the activation and regulation of mRNA surveillance. Genes Dev. 15, 2781-2785.
    • (2001) Genes Dev. , vol.15 , pp. 2781-2785
    • Wilusz, C.J.1    Wang, W.2    Peltz, S.W.3
  • 43
    • 0242300620 scopus 로고    scopus 로고
    • Empirical analysis of transcriptional activity in the Arabidopsis genome
    • Yamada, K., Lim, J., Dale, J.M. et al. (2003) Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 302, 842-846.
    • (2003) Science , vol.302 , pp. 842-846
    • Yamada, K.1    Lim, J.2    Dale, J.M.3
  • 44
    • 0142092368 scopus 로고    scopus 로고
    • RPS4-mediated disease resistance requires the combined presence of RPS4 transcripts with full-length and truncated open reading frames
    • Zhang, X.C. and Gassmann, W. (2003) RPS4-mediated disease resistance requires the combined presence of RPS4 transcripts with full-length and truncated open reading frames. Plant Cell, 15, 2333-2342.
    • (2003) Plant Cell , vol.15 , pp. 2333-2342
    • Zhang, X.C.1    Gassmann, W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.