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Volumn 38, Issue 6, 2010, Pages 1506-1510

Regulated and quality-control mRNA turnover pathways in eukaryotes

Author keywords

Cis encoded element; mRNA decay; RNA quality control; RNA surveillance; Trans factor

Indexed keywords

BUTYRATE RESPONSE FACTOR 1; CYTOKINE; DOUBLE STRANDED RNA; GROWTH FACTOR; HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D; HISTONE; INITIATION FACTOR 3; MESSENGER RNA; MICRORNA; NUCLEAR PROTEIN; PROTEIN STAU1; RIBONUCLEOPROTEIN; RIBOSOME RNA; RNA 18S; RNA BINDING PROTEIN; RNA INDUCED SILENCING COMPLEX PROTEIN; RNA POLYMERASE II; SMALL NUCLEAR RNA; TRANSCRIPTION FACTOR; TRANSFER RNA; TRISTETRAPROLIN; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN;

EID: 78649750139     PISSN: 03005127     EISSN: 14708752     Source Type: Journal    
DOI: 10.1042/BST0381506     Document Type: Conference Paper
Times cited : (17)

References (43)
  • 1
    • 0028788194 scopus 로고
    • AU-rich elements: Characterization and importance in mRNA degradation
    • Chen, C.Y. and Shyu, A.B. (1995) AU-rich elements: characterization and importance in mRNA degradation. Trends Biochem. Sci. 20, 465-470
    • (1995) Trends Biochem. Sci. , vol.20 , pp. 465-470
    • Chen, C.Y.1    Shyu, A.B.2
  • 2
    • 0038185346 scopus 로고    scopus 로고
    • Post-transcriptional regulation of gene expression by degradation of messenger RNAs
    • Bevilacqua, A., Ceriani, M.C., Capaccioli, S. and Nicolin, A. (2003) Post-transcriptional regulation of gene expression by degradation of messenger RNAs. J. Cell. Physiol. 195, 356-372
    • (2003) J. Cell. Physiol. , vol.195 , pp. 356-372
    • Bevilacqua, A.1    Ceriani, M.C.2    Capaccioli, S.3    Nicolin, A.4
  • 3
    • 6344233329 scopus 로고    scopus 로고
    • AU-rich elements and the control of gene expression through regulated mRNA stability
    • Gingerich, T.J., Feige, J.J. and LaMarre, J. (2004) AU-rich elements and the control of gene expression through regulated mRNA stability. Anim. Health Res. Rev. 5, 49-63
    • (2004) Anim. Health Res. Rev. , vol.5 , pp. 49-63
    • Gingerich, T.J.1    Feige, J.J.2    LaMarre, J.3
  • 4
    • 31144448042 scopus 로고    scopus 로고
    • AU-rich elements and associated factors: Are there unifying principles?
    • Barreau, C., Paillard, L. and Osborne, H.B. (2005) AU-rich elements and associated factors: are there unifying principles? Nucleic Acids Res. 33, 7138-7150
    • (2005) Nucleic Acids Res. , vol.33 , pp. 7138-7150
    • Barreau, C.1    Paillard, L.2    Osborne, H.B.3
  • 5
    • 63849239758 scopus 로고    scopus 로고
    • Post-transcriptional gene regulation by MAP kinases via AU-rich elements
    • Clark, A., Dean, J., Tudor, C. and Saklatvala, J. (2009) Post-transcriptional gene regulation by MAP kinases via AU-rich elements. Front. Biosci. 14, 847-871
    • (2009) Front. Biosci. , vol.14 , pp. 847-871
    • Clark, A.1    Dean, J.2    Tudor, C.3    Saklatvala, J.4
  • 6
    • 33644876034 scopus 로고    scopus 로고
    • ARED 3.0: The large and diverse AU-rich transcriptome
    • Bakheet, T., Williams, B.R. and Khabar, K.S. (2006) ARED 3.0: the large and diverse AU-rich transcriptome. Nucleic Acids Res. 34, D111-D114
    • (2006) Nucleic Acids Res. , vol.34
    • Bakheet, T.1    Williams, B.R.2    Khabar, K.S.3
  • 7
    • 69249221371 scopus 로고    scopus 로고
    • TIS11 family proteins and their roles in posttranscriptional gene regulation
    • Baou, M., Jewell, A. and Murphy, J.J. (2009) TIS11 family proteins and their roles in posttranscriptional gene regulation. J. Biomed. Biotechnol. 2009, 634520
    • (2009) J. Biomed. Biotechnol. , vol.2009 , pp. 634520
    • Baou, M.1    Jewell, A.2    Murphy, J.J.3
  • 10
    • 2342573011 scopus 로고    scopus 로고
    • HuR in the mammalian genotoxic response: Post-transcriptional multitasking
    • Gorospe, M. (2003) HuR in the mammalian genotoxic response: post-transcriptional multitasking. Cell Cycle 2, 412-414
    • (2003) Cell Cycle , vol.2 , pp. 412-414
    • Gorospe, M.1
  • 11
    • 57349138816 scopus 로고    scopus 로고
    • Posttranscriptional regulation of gene networks by GU-rich elements and CELF proteins
    • Vlasova, I.A. and Bohjanen, P.R. (2008) Posttranscriptional regulation of gene networks by GU-rich elements and CELF proteins. RNA Biol. 5, 201-207
    • (2008) RNA Biol. , vol.5 , pp. 201-207
    • Vlasova, I.A.1    Bohjanen, P.R.2
  • 12
    • 77955291454 scopus 로고    scopus 로고
    • Systematic analysis of cis-elements in unstable mRNAs demonstrates that CUGBP1 is a key regulator of mRNA decay in muscle cells
    • Lee, J.E., Lee, J.Y., Wilusz, J., Tian, B. and Wilusz, C.J. (2010) Systematic analysis of cis-elements in unstable mRNAs demonstrates that CUGBP1 is a key regulator of mRNA decay in muscle cells. PLoS ONE 5, e11201
    • (2010) PLoS ONE , vol.5
    • Lee, J.E.1    Lee, J.Y.2    Wilusz, J.3    Tian, B.4    Wilusz, C.J.5
  • 13
    • 70450203364 scopus 로고    scopus 로고
    • Pathogenic mechanisms of myotonic dystrophy
    • Lee, J.E. and Cooper, T.A. (2009) Pathogenic mechanisms of myotonic dystrophy. Biochem. Soc. Trans. 37, 1281-1286
    • (2009) Biochem. Soc. Trans. , vol.37 , pp. 1281-1286
    • Lee, J.E.1    Cooper, T.A.2
  • 15
    • 60149088848 scopus 로고    scopus 로고
    • Origins and mechanisms of miRNAs and siRNAs
    • Carthew, R.W. and Sontheimer, E.J. (2009) Origins and mechanisms of miRNAs and siRNAs. Cell 136, 642-655
    • (2009) Cell , vol.136 , pp. 642-655
    • Carthew, R.W.1    Sontheimer, E.J.2
  • 16
    • 77953635299 scopus 로고    scopus 로고
    • Biochemical principles of small RNA pathways
    • Liu, Q. and Paroo, Z. (2010) Biochemical principles of small RNA pathways. Annu. Rev. Biochem. 79, 295-319
    • (2010) Annu. Rev. Biochem. , vol.79 , pp. 295-319
    • Liu, Q.1    Paroo, Z.2
  • 17
    • 77953629046 scopus 로고    scopus 로고
    • Regulation of mRNA translation and stability by microRNAs
    • Fabian, M.R., Sonenberg, N. and Filipowicz, W. (2010) Regulation of mRNA translation and stability by microRNAs. Annu. Rev. Biochem. 79, 351-379
    • (2010) Annu. Rev. Biochem. , vol.79 , pp. 351-379
    • Fabian, M.R.1    Sonenberg, N.2    Filipowicz, W.3
  • 18
    • 46149102667 scopus 로고    scopus 로고
    • MicroRNA-directed regulation: To cleave or not to cleave
    • Mallory, A.C. and Bouché, N. (2008) MicroRNA-directed regulation: to cleave or not to cleave. Trends Plant Sci. 13, 359-367
    • (2008) Trends Plant Sci. , vol.13 , pp. 359-367
    • Mallory, A.C.1    Bouché, N.2
  • 19
    • 77951964981 scopus 로고    scopus 로고
    • Posttranscriptional regulation of microRNA biogenesis in animals
    • Siomi, H. and Siomi, M.C. (2010) Posttranscriptional regulation of microRNA biogenesis in animals. Mol. Cell 38, 323-332
    • (2010) Mol. Cell , vol.38 , pp. 323-332
    • Siomi, H.1    Siomi, M.C.2
  • 20
    • 35348821616 scopus 로고    scopus 로고
    • microRNAs in vertebrate physiology and human disease
    • Chang, T.C. and Mendell, J.T. (2007) microRNAs in vertebrate physiology and human disease. Annu. Rev. Genomics Hum. Genet. 8, 215-239
    • (2007) Annu. Rev. Genomics Hum. Genet. , vol.8 , pp. 215-239
    • Chang, T.C.1    Mendell, J.T.2
  • 22
    • 77449131843 scopus 로고    scopus 로고
    • MicroRNA assassins: Factors that regulate the disappearance of miRNAs
    • Kai, Z.S. and Pasquinelli, A.E. (2010) MicroRNA assassins: factors that regulate the disappearance of miRNAs. Nat. Struct. Mol. Biol. 17, 5-10
    • (2010) Nat. Struct. Mol. Biol. , vol.17 , pp. 5-10
    • Kai, Z.S.1    Pasquinelli, A.E.2
  • 23
    • 54149091257 scopus 로고    scopus 로고
    • Metabolism and regulation of canonical histone mRNAs: Life without a poly(A) tail
    • Marzluff, W.F., Wagner, E.J. and Duronio, R.J. (2008) Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail. Nat. Rev. Genet. 9, 843-854
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 843-854
    • Marzluff, W.F.1    Wagner, E.J.2    Duronio, R.J.3
  • 24
    • 70450182086 scopus 로고    scopus 로고
    • Gene expression networks: Competing mRNA decay pathways in mammalian cells
    • Maquat, L.E. and Gong, C. (2009) Gene expression networks: competing mRNA decay pathways in mammalian cells. Biochem. Soc. Trans. 37, 1287-1292
    • (2009) Biochem. Soc. Trans. , vol.37 , pp. 1287-1292
    • Maquat, L.E.1    Gong, C.2
  • 25
    • 36049041612 scopus 로고    scopus 로고
    • RNA quality control in eukaryotes
    • Doma, M.K. and Parker, R. (2007) RNA quality control in eukaryotes. Cell 131, 660-668
    • (2007) Cell , vol.131 , pp. 660-668
    • Doma, M.K.1    Parker, R.2
  • 26
    • 60149090021 scopus 로고    scopus 로고
    • The many pathways of RNA degradation
    • Houseley, J. and Tollervey, D. (2009) The many pathways of RNA degradation. Cell 136, 763-776
    • (2009) Cell , vol.136 , pp. 763-776
    • Houseley, J.1    Tollervey, D.2
  • 28
    • 34547623918 scopus 로고    scopus 로고
    • Quality control of eukaryotic mRNA: Safeguarding cells from abnormal mRNA function
    • Isken, O. and Maquat, L.E. (2007) Quality control of eukaryotic mRNA: safeguarding cells from abnormal mRNA function. Genes Dev. 21, 1833-1856
    • (2007) Genes Dev. , vol.21 , pp. 1833-1856
    • Isken, O.1    Maquat, L.E.2
  • 29
    • 66049162655 scopus 로고    scopus 로고
    • Execution of nonsense-mediated mRNA decay: What defines a substrate?
    • Rebbapragada, I. and Lykke-Andersen, J. (2009) Execution of nonsense-mediated mRNA decay: what defines a substrate? Curr. Opin. Cell Biol. 21, 394-402
    • (2009) Curr. Opin. Cell Biol. , vol.21 , pp. 394-402
    • Rebbapragada, I.1    Lykke-Andersen, J.2
  • 30
    • 48149095822 scopus 로고    scopus 로고
    • Alternative splicing resulting in nonsense-mediated mRNA decay: What is the meaning of nonsense?
    • McGlincy, N.J. and Smith, C.W. (2008) Alternative splicing resulting in nonsense-mediated mRNA decay: what is the meaning of nonsense? Trends Biochem. Sci. 33, 385-393
    • (2008) Trends Biochem. Sci. , vol.33 , pp. 385-393
    • McGlincy, N.J.1    Smith, C.W.2
  • 31
    • 33745770062 scopus 로고    scopus 로고
    • Early nonsense: mRNA decay solves a translational problem
    • Amrani, N., Sachs, M.S. and Jacobson, A. (2006) Early nonsense: mRNA decay solves a translational problem. Nat. Rev. Mol. Cell Biol. 7, 415-425
    • (2006) Nat. Rev. Mol. Cell Biol. , vol.7 , pp. 415-425
    • Amrani, N.1    Sachs, M.S.2    Jacobson, A.3
  • 32
    • 77949904260 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay in human cells: Mechanistic insights, functions beyond quality control and the double-life of NMD factors
    • Nicholson, P., Yepiskoposyan, H., Metze, S., Zamudio Orozco, R., Kleinschmidt, N. and Mühlemann, O. (2010) Nonsense-mediated mRNA decay in human cells: mechanistic insights, functions beyond quality control and the double-life of NMD factors. Cell. Mol. Life Sci. 67, 677-700
    • (2010) Cell. Mol. Life Sci. , vol.67 , pp. 677-700
    • Nicholson, P.1    Yepiskoposyan, H.2    Metze, S.3    Zamudio Orozco, R.4    Kleinschmidt, N.5    Mühlemann, O.6
  • 33
    • 59649124310 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay (NMD) mechanisms
    • Brogna, S. and Wen, J. (2009) Nonsense-mediated mRNA decay (NMD) mechanisms. Nat. Struct. Mol. Biol. 16, 107-113
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 107-113
    • Brogna, S.1    Wen, J.2
  • 34
    • 58649117962 scopus 로고    scopus 로고
    • The mammalian nonsense-mediated mRNA decay pathway: To decay or not to decay! Which players make the decision?
    • Silva, A.L. and Romão, L. (2009) The mammalian nonsense-mediated mRNA decay pathway: to decay or not to decay! Which players make the decision? FEBS Lett. 583, 499-505
    • (2009) FEBS Lett. , vol.583 , pp. 499-505
    • Silva, A.L.1    Romão, L.2
  • 35
    • 34247197937 scopus 로고    scopus 로고
    • The nonsense-mediated decay RNA surveillance pathway
    • Chang, Y.F., Imam, J.S. and Wilkinson, M.F. (2007) The nonsense-mediated decay RNA surveillance pathway. Annu. Rev. Biochem. 76, 51-74
    • (2007) Annu. Rev. Biochem. , vol.76 , pp. 51-74
    • Chang, Y.F.1    Imam, J.S.2    Wilkinson, M.F.3
  • 36
    • 74549134095 scopus 로고    scopus 로고
    • How and where are nonsense mRNAs degraded in mammalian cells?
    • Mühlemann, O. and Lykke-Andersen, J. (2010) How and where are nonsense mRNAs degraded in mammalian cells? RNA Biol. 7, 28-32
    • (2010) RNA Biol. , vol.7 , pp. 28-32
    • Mühlemann, O.1    Lykke-Andersen, J.2
  • 37
    • 2442436981 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay: From vacuum cleaner to Swiss army knife
    • Neu-Yilik, G., Gehring, N.H., Hentze, M.W. and Kulozik, A.E. (2004) Nonsense-mediated mRNA decay: from vacuum cleaner to Swiss army knife. Genome Biol. 5, 218
    • (2004) Genome Biol. , vol.5 , pp. 218
    • Neu-Yilik, G.1    Gehring, N.H.2    Hentze, M.W.3    Kulozik, A.E.4
  • 38
    • 34447124576 scopus 로고    scopus 로고
    • A cell type-restricted mRNA surveillance pathway triggered by ribosome extension into the 3′ untranslated region
    • Kong, J. and Liebhaber, S.A. (2007) A cell type-restricted mRNA surveillance pathway triggered by ribosome extension into the 3′ untranslated region. Nat. Struct. Mol. Biol. 14, 670-676
    • (2007) Nat. Struct. Mol. Biol. , vol.14 , pp. 670-676
    • Kong, J.1    Liebhaber, S.A.2
  • 39
    • 33645277360 scopus 로고    scopus 로고
    • Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation
    • Doma, M.K. and Parker, R. (2006) Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation. Nature 440, 561-564
    • (2006) Nature , vol.440 , pp. 561-564
    • Doma, M.K.1    Parker, R.2
  • 40
    • 33751316103 scopus 로고    scopus 로고
    • A late-acting quality control process for mature eukaryotic rRNAs
    • LaRiviere, F.J., Cole, S.E., Ferullo, D.J. and Moore, M.J. (2006) A late-acting quality control process for mature eukaryotic rRNAs. Mol. Cell 24, 619-626
    • (2006) Mol. Cell , vol.24 , pp. 619-626
    • LaRiviere, F.J.1    Cole, S.E.2    Ferullo, D.J.3    Moore, M.J.4
  • 41
    • 65649104440 scopus 로고    scopus 로고
    • A convergence of rRNA and mRNA quality control pathways revealed by mechanistic analysis of nonfunctional rRNA decay
    • Cole, S.E., LaRiviere, F.J., Merrikh, C.N. and Moore, M.J. (2009) A convergence of rRNA and mRNA quality control pathways revealed by mechanistic analysis of nonfunctional rRNA decay. Mol. Cell 34, 440-450
    • (2009) Mol. Cell , vol.34 , pp. 440-450
    • Cole, S.E.1    LaRiviere, F.J.2    Merrikh, C.N.3    Moore, M.J.4
  • 42
    • 0037439213 scopus 로고    scopus 로고
    • tRNA transfers to the limelight
    • Hopper, A.K. and Phizicky, E.M. (2003) tRNA transfers to the limelight. Genes Dev. 17, 162-180
    • (2003) Genes Dev. , vol.17 , pp. 162-180
    • Hopper, A.K.1    Phizicky, E.M.2
  • 43
    • 44149119097 scopus 로고    scopus 로고
    • Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5′-3′ exonucleases Rat1 and Xrn1
    • Chernyakov, I., Whipple, J.M., Kotelawala, L., Grayhack, E.J. and Phizicky, E.M. (2008) Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5′-3′ exonucleases Rat1 and Xrn1. Genes Dev. 22, 1369-1380
    • (2008) Genes Dev. , vol.22 , pp. 1369-1380
    • Chernyakov, I.1    Whipple, J.M.2    Kotelawala, L.3    Grayhack, E.J.4    Phizicky, E.M.5


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