-
1
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, Fitz Hugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, Kann L, Lehoczky J, Le Vine R, McEwan P, McKernan K, Meldrim J, Mesirov JP, Miranda C, Morris W, Naylor J, Raymond C, Rosetti M, Santos R, Sheridan A, Sougnez C, Stange-Thomann N, Stojanovic N, Subramanian A, Wyman D, Rogers J, Sulston J, Ainscough R, Beck S, Bentley D, Burton J, Clee C, Carter N, Coulson A, Deadman R, Deloukas P, Dunham A, Dunham I, Durbin R, French L, Grafham D, Gregory S, Hubbard T, Humphray S, Hunt A, Jones M, Lloyd C, McMurray A, Matthews L, Mercer S, Milne S, Mullikin JC, Mungall A, Plumb R, Ross M, Shownkeen R, Sims S, Waterston RH, Wilson RK, Hillier LW, McPherson JD, Marra MA, Mardis ER, Fulton LA, Chinwalla AT, Pepin KH, Gish WR, Chissoe SL, Wendl MC, Delehaunty KD, Miner TL, Delehaunty A, Kramer JB, Cook LL, Fulton RS, Johnson DL, Minx PJ, Clifton SW, Hawkins T, Branscomb E, Predki P, Richardson P, Wenning S, Slezak T, Doggett N, Cheng JF, Olsen A, Lucas S, Elkin C, Uberbacher E, Frazier M, Gibbs RA, Muzny DM, Scherer SE, Bouck JB, Sodergren EJ, Worley KC, Rives CM, Gorrell JH, Metzker ML, Naylor SL, Kucherlapati RS, Nelson DL, Weinstock GM, Sakaki Y, Fujiyama A, Hattori M, Yada T, Toyoda A, Itoh T, Kawagoe C, Watanabe H, Totoki Y, Taylor T, Weissenbach J, Heilig R, Saurin W, Artiguenave F, Brottier P, Bruls T, Pelletier E, Robert C, Wincker P, Smith DR, Doucette- Stamm L, Rubenfield M, Weinstock K, Lee HM, Dubois J, Rosenthal A, Platzer M, Nyakatura G, Taudien S, Rump A, Yang H, Yu J, Wang J, Huang G, Gu J, Hood L, Rowen L, Madan A, Qin S, Davis RW, Federspiel NA, Abola AP, Proctor MJ, Myers RM, Schmutz J, Dickson M, Grimwood J, Cox DR, Olson MV, Kaul R, Shimizu N, Kawasaki K, Minoshima S, Evans GA, Athanasiou M, Schultz R, Roe BA, Chen F, Pan H, Ramser J, Lehrach H, Reinhardt R, McCombie WR, de la Bastide M, Dedhia N, Blocker H, Hornischer K, Nordsiek G, Agarwala R, Aravind L, Bailey JA, Bateman A, Batzoglou S, Birney E, Bork P, Brown DG, Burge CB, Cerutti L, Chen HC, Church D, Clamp M, Copley RR, Doerks T, Eddy SR, Eichler EE, Furey TS, Galagan J, Gilbert JG, Harmon C, Hayashizaki Y, Haussler D, Hermjakob H, Hokamp K, Jang W, Johnson LS, Jones TA, Kasif S, Kaspryzk A, Kennedy S, Kent WJ, Kitts P, Koonin EV, Korf I, Kulp D, Lancet D, Lowe TM, McLysaght A, Mikkelsen T, Moran JV, Mulder N, Pollara VJ, Ponting CP, Schuler G, Schultz J, Slater G, Smit AF, Stupka E, Szustakowski J, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Wallis J, Wheeler R, Williams A, Wolf YI, Wolfe KH, Yang SP, Yeh RF, Collins F, Guyer MS, Peterson J, Felsenfeld A, Wetterstrand KA, Patrinos A, Morgan MJ, de Jong P, Catanese JJ, Osoegawa K, Shizuya H, Choi S and Chen YJ. Initial sequencing and analysis of the human genome. Nature 2001; 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
Fitz Hugh, W.10
Funke, R.11
Gage, D.12
Harris, K.13
Heaford, A.14
Howland, J.15
Kann, L.16
Lehoczky, J.17
le Vine, R.18
McEwan, P.19
McKernan, K.20
Meldrim, J.21
Mesirov, J.P.22
Miranda, C.23
Morris, W.24
Naylor, J.25
Raymond, C.26
Rosetti, M.27
Santos, R.28
Sheridan, A.29
Sougnez, C.30
Stange-Thomann, N.31
Stojanovic, N.32
Subramanian, A.33
Wyman, D.34
Rogers, J.35
Sulston, J.36
Ainscough, R.37
Beck, S.38
Bentley, D.39
Burton, J.40
Clee, C.41
Carter, N.42
Coulson, A.43
Deadman, R.44
Deloukas, P.45
Dunham, A.46
Dunham, I.47
Durbin, R.48
French, L.49
Grafham, D.50
Gregory, S.51
Hubbard, T.52
Humphray, S.53
Hunt, A.54
Jones, M.55
Lloyd, C.56
McMurray, A.57
Matthews, L.58
Mercer, S.59
Milne, S.60
Mullikin, J.C.61
Mungall, A.62
Plumb, R.63
Ross, M.64
more..
-
2
-
-
0035895505
-
The sequence of the human genome
-
Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, Thomas PD, Zhang J, Gabor Miklos GL, Nelson C, Broder S, Clark AG, Nadeau J, McKusick VA, Zinder N, Levine AJ, Roberts RJ, Simon M, Slayman C, Hunkapiller M, Bolanos R, Delcher A, Dew I, Fasulo D, Flanigan M, Florea L, Halpern A, Hannenhalli S, Kravitz S, Levy S, Mobarry C, Reinert K, Remington K, Abu-Threideh J, Beasley E, Biddick K, Bonazzi V, Brandon R, Cargill M, Chandramouliswaran I, Charlab R, Chaturvedi K, Deng Z, Di Francesco V, Dunn P, Eilbeck K, Evangelista C, Gabrielian AE, Gan W, Ge W, Gong F, Gu Z, Guan P, Heiman TJ, Higgins ME, Ji RR, Ke Z, Ketchum KA, Lai Z, Lei Y, Li Z, Li J, Liang Y, Lin X, Lu F, Merkulov GV, Milshina N, Moore HM, Naik AK, Narayan VA, Neelam B, Nusskern D, Rusch DB, Salzberg S, Shao W, Shue B, Sun J, Wang Z, Wang A, Wang X, Wang J, Wei M, Wides R, Xiao C, Yan C, Yao A, Ye J, Zhan M, Zhang W, Zhang H, Zhao Q, Zheng L, Zhong F, Zhong W, Zhu S, Zhao S, Gilbert D, Baumhueter S, Spier G, Carter C, Cravchik A, Woodage T, Ali F, An H, Awe A, Baldwin D, Baden H, Barnstead M, Barrow I, Beeson K, Busam D, Carver A, Center A, Cheng ML, Curry L, Danaher S, Davenport L, Desilets R, Dietz S, Dodson K, Doup L, Ferriera S, Garg N, Gluecksmann A, Hart B, Haynes J, Haynes C, Heiner C, Hladun S, Hostin D, Houck J, Howland T, Ibegwam C, Johnson J, Kalush F, Kline L, Koduru S, Love A, Mann F, May D, McCawley S, McIntosh T, McMullen I, Moy M, Moy L, Murphy B, Nelson K, Pfannkoch C, Pratts E, Puri V, Qureshi H, Reardon M, Rodriguez R, Rogers YH, Romblad D, Ruhfel B, Scott R, Sitter C, Smallwood M, Stewart E, Strong R, Suh E, Thomas R, Tint NN, Tse S, Vech C, Wang G, Wetter J, Williams S, Williams M, Windsor S, Winn- Deen E, Wolfe K, Zaveri J, Zaveri K, Abril JF, Guigo R, Campbell MJ, Sjolander KV, Karlak B, Kejariwal A, Mi H, Lazareva B, Hatton T, Narechania A, Diemer K, Muruganujan A, Guo N, Sato S, Bafna V, Istrail S, Lippert R, Schwartz R, Walenz B, Yooseph S, Allen D, Basu A, Baxendale J, Blick L, Caminha M, Carnes-Stine J, Caulk P, Chiang YH, Coyne M, Dahlke C, Mays A, Dombroski M, Donnelly M, Ely D, Esparham S, Fosler C, Gire H, Glanowski S, Glasser K, Glodek A, Gorokhov M, Graham K, Gropman B, Harris M, Heil J, Henderson S, Hoover J, Jennings D, Jordan C, Jordan J, Kasha J, Kagan L, Kraft C, Levitsky A, Lewis M, Liu X, Lopez J, Ma D, Majoros W, McDaniel J, Murphy S, Newman M, Nguyen T, Nguyen N, Nodell M, Pan S, Peck J, Peterson M, Rowe W, Sanders R, Scott J, Simpson M, Smith T, Sprague A, Stockwell T, Turner R, Venter E, Wang M, Wen M, Wu D, Wu M, Xia A, Zandieh A and Zhu X. The sequence of the human genome. Science 2001; 291: 1304-1351.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
Smith, H.O.7
Yandell, M.8
Evans, C.A.9
Holt, R.A.10
Gocayne, J.D.11
Amanatides, P.12
Ballew, R.M.13
Huson, D.H.14
Wortman, J.R.15
Zhang, Q.16
Kodira, C.D.17
Zheng, X.H.18
Chen, L.19
Skupski, M.20
Subramanian, G.21
Thomas, P.D.22
Zhang, J.23
Gabor Miklos, G.L.24
Nelson, C.25
Broder, S.26
Clark, A.G.27
Nadeau, J.28
McKusick, V.A.29
Zinder, N.30
Levine, A.J.31
Roberts, R.J.32
Simon, M.33
Slayman, C.34
Hunkapiller, M.35
Bolanos, R.36
Delcher, A.37
Dew, I.38
Fasulo, D.39
Flanigan, M.40
Florea, L.41
Halpern, A.42
Hannenhalli, S.43
Kravitz, S.44
Levy, S.45
Mobarry, C.46
Reinert, K.47
Remington, K.48
Abu-Threideh, J.49
Beasley, E.50
Biddick, K.51
Bonazzi, V.52
Brandon, R.53
Cargill, M.54
Chandramouliswaran, I.55
Charlab, R.56
Chaturvedi, K.57
Deng, Z.58
Di Francesco, V.59
Dunn, P.60
Eilbeck, K.61
more..
-
3
-
-
0142104045
-
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
-
Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A, Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V, Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF, Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ, Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL, Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR, Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K, Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R, Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C, Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z, Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N, Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K, Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A, Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M, Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature 2002; 420: 563-573.
-
(2002)
Nature
, vol.420
, pp. 563-573
-
-
Okazaki, Y.1
Furuno, M.2
Kasukawa, T.3
Adachi, J.4
Bono, H.5
Kondo, S.6
Nikaido, I.7
Osato, N.8
Saito, R.9
Suzuki, H.10
Yamanaka, I.11
Kiyosawa, H.12
Yagi, K.13
Tomaru, Y.14
Hasegawa, Y.15
Nogami, A.16
Schonbach, C.17
Gojobori, T.18
Baldarelli, R.19
Hill, D.P.20
Bult, C.21
Hume, D.A.22
Quackenbush, J.23
Schriml, L.M.24
Kanapin, A.25
Matsuda, H.26
Batalov, S.27
Beisel, K.W.28
Blake, J.A.29
Bradt, D.30
Brusic, V.31
Chothia, C.32
Corbani, L.E.33
Cousins, S.34
Dalla, E.35
Dragani, T.A.36
Fletcher, C.F.37
Forrest, A.38
Frazer, K.S.39
Gaasterland, T.40
Gariboldi, M.41
Gissi, C.42
Godzik, A.43
Gough, J.44
Grimmond, S.45
Gustincich, S.46
Hirokawa, N.47
Jackson, I.J.48
Jarvis, E.D.49
Kanai, A.50
Kawaji, H.51
Kawasawa, Y.52
Kedzierski, R.M.53
King, B.L.54
more..
-
4
-
-
33646490270
-
Transcript annotation in FANTOM3: Mouse gene catalog based on physical cDNAs
-
Maeda N, Kasukawa T, Oyama R, Gough J, Frith M, Engstrom PG, Lenhard B, Aturaliya RN, Batalov S, Beisel KW, Bult CJ, Fletcher CF, Forrest AR, Furuno M, Hill D, Itoh M, Kanamori- Katayama M, Katayama S, Katoh M, Kawashima T, Quackenbush J, Ravasi T, Ring BZ, Shibata K, Sugiura K, Takenaka Y, Teasdale RD, Wells CA, Zhu Y, Kai C, Kawai J, Hume DA, Carninci P and Hayashizaki Y. Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs. PLoS Genet 2006; 2: e62.
-
(2006)
PLoS Genet
, vol.2
-
-
Maeda, N.1
Kasukawa, T.2
Oyama, R.3
Gough, J.4
Frith, M.5
Engstrom, P.G.6
Lenhard, B.7
Aturaliya, R.N.8
Batalov, S.9
Beisel, K.W.10
Bult, C.J.11
Fletcher, C.F.12
Forrest, A.R.13
Furuno, M.14
Hill, D.15
Itoh, M.16
Kanamori-Katayama, M.17
Katayama, S.18
Katoh, M.19
Kawashima, T.20
Quackenbush, J.21
Ravasi, T.22
Ring, B.Z.23
Shibata, K.24
Sugiura, K.25
Takenaka, Y.26
Teasdale, R.D.27
Wells, C.A.28
Zhu, Y.29
Kai, C.30
Kawai, J.31
Hume, D.A.32
Carninci, P.33
Hayashizaki, Y.34
more..
-
5
-
-
19944376457
-
Global identification of human transcribed sequences with genome tiling arrays
-
Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X, Rinn JL, Tongprasit W, Samanta M, Weissman S, Gerstein M and Snyder M. Global identification of human transcribed sequences with genome tiling arrays. Science 2004; 306: 2242-2246.
-
(2004)
Science
, vol.306
, pp. 2242-2246
-
-
Bertone, P.1
Stolc, V.2
Royce, T.E.3
Rozowsky, J.S.4
Urban, A.E.5
Zhu, X.6
Rinn, J.L.7
Tongprasit, W.8
Samanta, M.9
Weissman, S.10
Gerstein, M.11
Snyder, M.12
-
6
-
-
34250160256
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription
-
Kapranov P, Cheng J, Dike S, Nix DA, Duttagupta R, Willingham AT, Stadler PF, Hertel J, Hackermuller J, Hofacker IL, Bell I, Cheung E, Drenkow J, Dumais E, Patel S, Helt G, Ganesh M, Ghosh S, Piccolboni A, Sementchenko V, Tammana H and Gingeras TR. RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science 2007; 316: 1484-1488.
-
(2007)
Science
, vol.316
, pp. 1484-1488
-
-
Kapranov, P.1
Cheng, J.2
Dike, S.3
Nix, D.A.4
Duttagupta, R.5
Willingham, A.T.6
Stadler, P.F.7
Hertel, J.8
Hackermuller, J.9
Hofacker, I.L.10
Bell, I.11
Cheung, E.12
Drenkow, J.13
Dumais, E.14
Patel, S.15
Helt, G.16
Ganesh, M.17
Ghosh, S.18
Piccolboni, A.19
Sementchenko, V.20
Tammana, H.21
Gingeras, T.R.22
more..
-
7
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman M, Amit I, Garber M, French C, Lin MF, Feldser D, Huarte M, Zuk O, Carey BW, Cassady JP, Cabili MN, Jaenisch R, Mikkelsen TS, Jacks T, Hacohen N, Bernstein BE, Kellis M, Regev A, Rinn JL and Lander ES. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 2009; 458: 223-227.
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
Huarte, M.7
Zuk, O.8
Carey, B.W.9
Cassady, J.P.10
Cabili, M.N.11
Jaenisch, R.12
Mikkelsen, T.S.13
Jacks, T.14
Hacohen, N.15
Bernstein, B.E.16
Kellis, M.17
Regev, A.18
Rinn, J.L.19
Lander, E.S.20
more..
-
8
-
-
79959359296
-
Long antisense non-coding RNAs function to direct epigenetic complexes that regulate transcription in human cells
-
Morris KV. Long antisense non-coding RNAs function to direct epigenetic complexes that regulate transcription in human cells. Epigenetics 2009; 4: 296-301.
-
(2009)
Epigenetics
, vol.4
, pp. 296-301
-
-
Morris, K.V.1
-
9
-
-
57149110631
-
Bidirectional transcription directs both transcriptional gene activation and suppression in human cells
-
Morris KV, Santoso S, Turner AM, Pastori C and Hawkins PG. Bidirectional transcription directs both transcriptional gene activation and suppression in human cells. PLoS Genet 2008; 4: e1000258.
-
(2008)
PLoS Genet
, vol.4
-
-
Morris, K.V.1
Santoso, S.2
Turner, A.M.3
Pastori, C.4
Hawkins, P.G.5
-
10
-
-
78049336053
-
Pseudogenes as an alternative source of natural antisense transcripts
-
Muro EM, Andrade-Navarro MA. Pseudogenes as an alternative source of natural antisense transcripts. BMC Evol Biol 2010; 10: 338.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 338
-
-
Muro, E.M.1
Andrade-Navarro, M.A.2
-
11
-
-
33646468946
-
Pseudo-messenger RNA: Phantoms of the transcriptome
-
Frith MC, Wilming LG, Forrest A, Kawaji H, Tan SL, Wahlestedt C, Bajic VB, Kai C, Kawai J, Carninci P, Hayashizaki Y, Bailey TL and Huminiecki L. Pseudo-messenger RNA: phantoms of the transcriptome. PLoS Genet 2006; 2: e23.
-
(2006)
PLoS Genet
, vol.2
-
-
Frith, M.C.1
Wilming, L.G.2
Forrest, A.3
Kawaji, H.4
Tan, S.L.5
Wahlestedt, C.6
Bajic, V.B.7
Kai, C.8
Kawai, J.9
Carninci, P.10
Hayashizaki, Y.11
Bailey, T.L.12
Huminiecki, L.13
-
12
-
-
45449108588
-
Conserved tissue expression signatures of intronic noncoding RNAs transcribed from human and mouse loci
-
Louro R, El-Jundi T, Nakaya HI, Reis EM and Verjovski-Almeida S. Conserved tissue expression signatures of intronic noncoding RNAs transcribed from human and mouse loci. Genomics 2008; 92: 18-25.
-
(2008)
Genomics
, vol.92
, pp. 18-25
-
-
Louro, R.1
El-Jundi, T.2
Nakaya, H.I.3
Reis, E.M.4
Verjovski-Almeida, S.5
-
13
-
-
38649114329
-
Specific expression of long noncoding RNAs in the mouse brain
-
Mercer TR, Dinger ME, Sunkin SM, Mehler MF and Mattick JS. Specific expression of long noncoding RNAs in the mouse brain. Proc Natl Acad Sci USA 2008; 105: 716-721.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 716-721
-
-
Mercer, T.R.1
Dinger, M.E.2
Sunkin, S.M.3
Mehler, M.F.4
Mattick, J.S.5
-
14
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatinmodifying complexes and affect gene expression
-
Khalil AM, Guttman M, Huarte M, Garber M, Raj A, Rivea Morales D, Thomas K, Presser A, Bernstein BE, van Oudenaarden A, Regev A, Lander ES and Rinn JL. Many human large intergenic noncoding RNAs associate with chromatinmodifying complexes and affect gene expression. Proc Natl Acad Sci USA 2009; 106: 11667-11672.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
Garber, M.4
Raj, A.5
Rivea Morales, D.6
Thomas, K.7
Presser, A.8
Bernstein, B.E.9
van Oudenaarden, A.10
Regev, A.11
Lander, E.S.12
Rinn, J.L.13
-
15
-
-
77954572735
-
Long noncoding RNA as modular scaffold of histone modification complexes
-
Tsai MC, Manor O, Wan Y, Mosammaparast N, Wang JK, Lan F, Shi Y, Segal E and Chang HY. Long noncoding RNA as modular scaffold of histone modification complexes. Science 2010; 329: 689-693.
-
(2010)
Science
, vol.329
, pp. 689-693
-
-
Tsai, M.C.1
Manor, O.2
Wan, Y.3
Mosammaparast, N.4
Wang, J.K.5
Lan, F.6
Shi, Y.7
Segal, E.8
Chang, H.Y.9
-
16
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
Gupta RA, Shah N, Wang KC, Kim J, Horlings HM, Wong DJ, Tsai MC, Hung T, Argani P, Rinn JL, Wang Y, Brzoska P, Kong B, Li R, West RB, van de Vijver MJ, Sukumar S and Chang HY. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 2010; 464: 1071-1076.
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
Kim, J.4
Horlings, H.M.5
Wong, D.J.6
Tsai, M.C.7
Hung, T.8
Argani, P.9
Rinn, J.L.10
Wang, Y.11
Brzoska, P.12
Kong, B.13
Li, R.14
West, R.B.15
van de Vijver, M.J.16
Sukumar, S.17
Chang, H.Y.18
-
17
-
-
0025961771
-
A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome
-
Brown CJ, Ballabio A, Rupert JL, Lafreniere RG, Grompe M, Tonlorenzi R and Willard HF. A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome. Nature 1991; 349: 38-44.
-
(1991)
Nature
, vol.349
, pp. 38-44
-
-
Brown, C.J.1
Ballabio, A.2
Rupert, J.L.3
Lafreniere, R.G.4
Grompe, M.5
Tonlorenzi, R.6
Willard, H.F.7
-
18
-
-
0026456701
-
The human XIST gene: Analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus
-
Brown CJ, Hendrich BD, Rupert JL, Lafreniere RG, Xing Y, Lawrence J and Willard HF. The human XIST gene: analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus. Cell 1992; 71: 527-542.
-
(1992)
Cell
, vol.71
, pp. 527-542
-
-
Brown, C.J.1
Hendrich, B.D.2
Rupert, J.L.3
Lafreniere, R.G.4
Xing, Y.5
Lawrence, J.6
Willard, H.F.7
-
19
-
-
55349109963
-
Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
-
Zhao J, Sun BK, Erwin JA, Song JJ and Lee JT. Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science 2008; 322: 750-756.
-
(2008)
Science
, vol.322
, pp. 750-756
-
-
Zhao, J.1
Sun, B.K.2
Erwin, J.A.3
Song, J.J.4
Lee, J.T.5
-
20
-
-
56149111804
-
Identification of the human homolog of the imprinted mouse Air non-coding RNA
-
Yotova IY, Vlatkovic IM, Pauler FM, Warczok KE, Ambros PF, Oshimura M, Theussl HC, Gessler M, Wagner EF and Barlow DP. Identification of the human homolog of the imprinted mouse Air non-coding RNA. Genomics 2008; 92: 464-473.
-
(2008)
Genomics
, vol.92
, pp. 464-473
-
-
Yotova, I.Y.1
Vlatkovic, I.M.2
Pauler, F.M.3
Warczok, K.E.4
Ambros, P.F.5
Oshimura, M.6
Theussl, H.C.7
Gessler, M.8
Wagner, E.F.9
Barlow, D.P.10
-
21
-
-
78649807567
-
Phosphorylation of the PRC2 component Ezh2 is cell cycleregulated and up-regulates its binding to ncRNA
-
Kaneko S, Li G, Son J, Xu CF, Margueron R, Neubert TA and Reinberg D. Phosphorylation of the PRC2 component Ezh2 is cell cycleregulated and up-regulates its binding to ncRNA. Genes Dev 2010; 24: 2615-2620.
-
(2010)
Genes Dev
, vol.24
, pp. 2615-2620
-
-
Kaneko, S.1
Li, G.2
Son, J.3
Xu, C.F.4
Margueron, R.5
Neubert, T.A.6
Reinberg, D.7
-
22
-
-
22344451854
-
Tsix transcription across the Xist gene alters chromatin conformation without affecting Xist transcription: Implications for Xchromosome inactivation
-
Navarro P, Pichard S, Ciaudo C, Avner P and Rougeulle C. Tsix transcription across the Xist gene alters chromatin conformation without affecting Xist transcription: implications for Xchromosome inactivation. Genes Dev 2005; 19: 1474-1484.
-
(2005)
Genes Dev
, vol.19
, pp. 1474-1484
-
-
Navarro, P.1
Pichard, S.2
Ciaudo, C.3
Avner, P.4
Rougeulle, C.5
-
23
-
-
77958472025
-
The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation
-
Tian D, Sun S and Lee JT. The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation. Cell 2010; 143: 390-403.
-
(2010)
Cell
, vol.143
, pp. 390-403
-
-
Tian, D.1
Sun, S.2
Lee, J.T.3
-
24
-
-
0030694713
-
Imprinted expression of the Igf2r gene depends on an intronic CpG island
-
Wutz A, Smrzka OW, Schweifer N, Schellander K, Wagner EF and Barlow DP. Imprinted expression of the Igf2r gene depends on an intronic CpG island. Nature 1997; 389: 745-749.
-
(1997)
Nature
, vol.389
, pp. 745-749
-
-
Wutz, A.1
Smrzka, O.W.2
Schweifer, N.3
Schellander, K.4
Wagner, E.F.5
Barlow, D.P.6
-
25
-
-
56549111129
-
The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin
-
Nagano T, Mitchell JA, Sanz LA, Pauler FM, Ferguson- Smith AC, Feil R and Fraser P. The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. Science 2008; 322: 1717-1720.
-
(2008)
Science
, vol.322
, pp. 1717-1720
-
-
Nagano, T.1
Mitchell, J.A.2
Sanz, L.A.3
Pauler, F.M.4
Ferguson-Smith, A.C.5
Feil, R.6
Fraser, P.7
-
26
-
-
0034118382
-
The imprinted antisense RNA at the Igf2r locus overlaps but does not imprint Mas1
-
Lyle R, Watanabe D, te Vruchte D, Lerchner W, Smrzka OW, Wutz A, Schageman J, Hahner L, Davies C and Barlow DP. The imprinted antisense RNA at the Igf2r locus overlaps but does not imprint Mas1. Nat Genet 2000; 25: 19-21.
-
(2000)
Nat Genet
, vol.25
, pp. 19-21
-
-
Lyle, R.1
Watanabe, D.2
te Vruchte, D.3
Lerchner, W.4
Smrzka, O.W.5
Wutz, A.6
Schageman, J.7
Hahner, L.8
Davies, C.9
Barlow, D.P.10
-
27
-
-
0037075032
-
The noncoding Air RNA is required for silencing autosomal imprinted genes
-
Sleutels F, Zwart R and Barlow DP. The noncoding Air RNA is required for silencing autosomal imprinted genes. Nature 2002; 415: 810-813.
-
(2002)
Nature
, vol.415
, pp. 810-813
-
-
Sleutels, F.1
Zwart, R.2
Barlow, D.P.3
-
28
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
Rinn JL, Kertesz M, Wang JK, Squazzo SL, Xu X, Brugmann SA, Goodnough LH, Helms JA, Farnham PJ, Segal E and Chang HY. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 2007; 129: 1311-1323.
-
(2007)
Cell
, vol.129
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
Squazzo, S.L.4
Xu, X.5
Brugmann, S.A.6
Goodnough, L.H.7
Helms, J.A.8
Farnham, P.J.9
Segal, E.10
Chang, H.Y.11
-
29
-
-
77953096072
-
Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a
-
Yap KL, Li S, Munoz-Cabello AM, Raguz S, Zeng L, Mujtaba S, Gil J, Walsh MJ and Zhou MM. Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a. Mol Cell 2010; 38: 662-674.
-
(2010)
Mol Cell
, vol.38
, pp. 662-674
-
-
Yap, K.L.1
Li, S.2
Munoz-Cabello, A.M.3
Raguz, S.4
Zeng, L.5
Mujtaba, S.6
Gil, J.7
Walsh, M.J.8
Zhou, M.M.9
-
30
-
-
34248547495
-
Characterization of a germ-line deletion, including the entire INK4/ ARF locus, in a melanoma-neural system tumor family: Identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF
-
Pasmant E, Laurendeau I, Heron D, Vidaud M, Vidaud D and Bieche I. Characterization of a germ-line deletion, including the entire INK4/ ARF locus, in a melanoma-neural system tumor family: identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF. Cancer Res 2007; 67: 3963-3969.
-
(2007)
Cancer Res
, vol.67
, pp. 3963-3969
-
-
Pasmant, E.1
Laurendeau, I.2
Heron, D.3
Vidaud, M.4
Vidaud, D.5
Bieche, I.6
-
32
-
-
79955468280
-
Long noncoding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene
-
Kotake Y, Nakagawa T, Kitagawa K, Suzuki S, Liu N, Kitagawa M and Xiong Y. Long noncoding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene. Oncogene 2011; 30: 1956-1962.
-
(2011)
Oncogene
, vol.30
, pp. 1956-1962
-
-
Kotake, Y.1
Nakagawa, T.2
Kitagawa, K.3
Suzuki, S.4
Liu, N.5
Kitagawa, M.6
Xiong, Y.7
-
33
-
-
54049138948
-
Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation
-
Pandey RR, Mondal T, Mohammad F, Enroth S, Redrup L, Komorowski J, Nagano T, Mancini- Dinardo D and Kanduri C. Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation. Mol Cell 2008; 32: 232-246.
-
(2008)
Mol Cell
, vol.32
, pp. 232-246
-
-
Pandey, R.R.1
Mondal, T.2
Mohammad, F.3
Enroth, S.4
Redrup, L.5
Komorowski, J.6
Nagano, T.7
Mancini- dinardo, D.8
Kanduri, C.9
-
34
-
-
0033529207
-
A maternally methylated CpG island in KvLQT1 is associated with an antisense paternal transcript and loss of imprinting in Beckwith-Wiedemann syndrome
-
Smilinich NJ, Day CD, Fitzpatrick GV, Caldwell GM, Lossie AC, Cooper PR, Smallwood AC, Joyce JA, Schofield PN, Reik W, Nicholls RD, Weksberg R, Driscoll DJ, Maher ER, Shows TB and Higgins MJ. A maternally methylated CpG island in KvLQT1 is associated with an antisense paternal transcript and loss of imprinting in Beckwith-Wiedemann syndrome. Proc Natl Acad Sci USA 1999; 96: 8064-8069.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 8064-8069
-
-
Smilinich, N.J.1
Day, C.D.2
Fitzpatrick, G.V.3
Caldwell, G.M.4
Lossie, A.C.5
Cooper, P.R.6
Smallwood, A.C.7
Joyce, J.A.8
Schofield, P.N.9
Reik, W.10
Nicholls, R.D.11
Weksberg, R.12
Driscoll, D.J.13
Maher, E.R.14
Shows, T.B.15
Higgins, M.J.16
-
35
-
-
10644247491
-
NF-Y regulates the antisense promoter, bidirectional silencing, and differential epigenetic marks of the Kcnq1 imprinting control region
-
Pandey RR, Ceribelli M, Singh PB, Ericsson J, Mantovani R and Kanduri C. NF-Y regulates the antisense promoter, bidirectional silencing, and differential epigenetic marks of the Kcnq1 imprinting control region. J Biol Chem 2004; 279: 52685-52693.
-
(2004)
J Biol Chem
, vol.279
, pp. 52685-52693
-
-
Pandey, R.R.1
Ceribelli, M.2
Singh, P.B.3
Ericsson, J.4
Mantovani, R.5
Kanduri, C.6
-
36
-
-
33646598385
-
Elongation of the Kcnq1ot1 transcript is required for genomic imprinting of neighboring genes
-
Mancini-Dinardo D, Steele SJ, Levorse JM, Ingram RS and Tilghman SM. Elongation of the Kcnq1ot1 transcript is required for genomic imprinting of neighboring genes. Genes Dev 2006; 20: 1268-1282.
-
(2006)
Genes Dev
, vol.20
, pp. 1268-1282
-
-
Mancini-Dinardo, D.1
Steele, S.J.2
Levorse, J.M.3
Ingram, R.S.4
Tilghman, S.M.5
-
37
-
-
33646768644
-
The length of the transcript encoded from the Kcnq1ot1 antisense promoter determines the degree of silencing
-
Kanduri C, Thakur N and Pandey RR. The length of the transcript encoded from the Kcnq1ot1 antisense promoter determines the degree of silencing. Embo J 2006; 25: 2096-2106.
-
(2006)
Embo J
, vol.25
, pp. 2096-2106
-
-
Kanduri, C.1
Thakur, N.2
Pandey, R.R.3
-
38
-
-
33751538628
-
Epigenetic dynamics of the Kcnq1 imprinted domain in the early embryo
-
Lewis A, Green K, Dawson C, Redrup L, Huynh KD, Lee JT, Hemberger M and Reik W. Epigenetic dynamics of the Kcnq1 imprinted domain in the early embryo. Development 2006; 133: 4203-4210.
-
(2006)
Development
, vol.133
, pp. 4203-4210
-
-
Lewis, A.1
Green, K.2
Dawson, C.3
Redrup, L.4
Huynh, K.D.5
Lee, J.T.6
Hemberger, M.7
Reik, W.8
-
39
-
-
57349086045
-
Functional insights into long antisense noncoding RNA Kcnq1ot1 mediated bidirectional silencing
-
Kanduri C. Functional insights into long antisense noncoding RNA Kcnq1ot1 mediated bidirectional silencing. RNA Biol 2008; 5: 208-211.
-
(2008)
RNA Biol
, vol.5
, pp. 208-211
-
-
Kanduri, C.1
-
40
-
-
44349115087
-
Kcnq1ot1/Lit1 noncoding RNA mediates transcriptional silencing by targeting to the perinucleolar region
-
Mohammad F, Pandey RR, Nagano T, Chakalova L, Mondal T, Fraser P and Kanduri C. Kcnq1ot1/Lit1 noncoding RNA mediates transcriptional silencing by targeting to the perinucleolar region. Mol Cell Biol 2008; 28: 3713-3728.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 3713-3728
-
-
Mohammad, F.1
Pandey, R.R.2
Nagano, T.3
Chakalova, L.4
Mondal, T.5
Fraser, P.6
Kanduri, C.7
-
41
-
-
77955757309
-
Kcnq1ot1 noncoding RNA mediates transcriptional gene silencing by interacting with Dnmt1
-
Mohammad F, Mondal T, Guseva N, Pandey GK and Kanduri C. Kcnq1ot1 noncoding RNA mediates transcriptional gene silencing by interacting with Dnmt1. Development 2010; 137: 2493-2499.
-
(2010)
Development
, vol.137
, pp. 2493-2499
-
-
Mohammad, F.1
Mondal, T.2
Guseva, N.3
Pandey, G.K.4
Kanduri, C.5
-
42
-
-
37349043972
-
Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends
-
Azzalin CM, Reichenbach P, Khoriauli L, Giulotto E and Lingner J. Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends. Science 2007; 318: 798-801.
-
(2007)
Science
, vol.318
, pp. 798-801
-
-
Azzalin, C.M.1
Reichenbach, P.2
Khoriauli, L.3
Giulotto, E.4
Lingner, J.5
-
43
-
-
68949198783
-
TERRA RNA binding to TRF2 facilitates heterochromatin formation and ORC recruitment at telomeres
-
Deng Z, Norseen J, Wiedmer A, Riethman H and Lieberman PM. TERRA RNA binding to TRF2 facilitates heterochromatin formation and ORC recruitment at telomeres. Mol Cell 2009; 35: 403-413.
-
(2009)
Mol Cell
, vol.35
, pp. 403-413
-
-
Deng, Z.1
Norseen, J.2
Wiedmer, A.3
Riethman, H.4
Lieberman, P.M.5
-
44
-
-
38849111756
-
Developmentally regulated transcription of mammalian telomeres by DNA-dependent RNA polymerase II
-
Schoeftner S, Blasco MA. Developmentally regulated transcription of mammalian telomeres by DNA-dependent RNA polymerase II. Nat Cell Biol 2008; 10: 228-236.
-
(2008)
Nat Cell Biol
, vol.10
, pp. 228-236
-
-
Schoeftner, S.1
Blasco, M.A.2
-
45
-
-
77049094890
-
Chromatin regulation and non-coding RNAs at mammalian telomeres
-
Schoeftner S and Blasco MA. Chromatin regulation and non-coding RNAs at mammalian telomeres. Semin Cell Dev Biol 2010; 21: 186-193.
-
(2010)
Semin Cell Dev Biol
, vol.21
, pp. 186-193
-
-
Schoeftner, S.1
Blasco, M.A.2
-
46
-
-
77957243987
-
The non-coding RNA TERRA is a natural ligand and direct inhibitor of human telomerase
-
Redon S, Reichenbach P and Lingner J. The non-coding RNA TERRA is a natural ligand and direct inhibitor of human telomerase. Nucleic Acids Res 2010; 38: 5797-5806.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 5797-5806
-
-
Redon, S.1
Reichenbach, P.2
Lingner, J.3
-
47
-
-
78650153788
-
TERRA transcripts are bound by a complex array of RNA-binding proteins
-
de Silanes IL, d'Alcontres MS and Blasco MA. TERRA transcripts are bound by a complex array of RNA-binding proteins. Nat Commun 2010; 1: 33.
-
(2010)
Nat Commun
, vol.1
, pp. 33
-
-
de Silanes, I.L.1
d'Alcontres, M.S.2
Blasco, M.A.3
-
48
-
-
77953107585
-
Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2
-
Kanhere A, Viiri K, Araujo CC, Rasaiyaah J, Bouwman RD, Whyte WA, Pereira CF, Brookes E, Walker K, Bell GW, Pombo A, Fisher AG, Young RA and Jenner RG. Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2. Mol Cell 2010; 38: 675-688.
-
(2010)
Mol Cell
, vol.38
, pp. 675-688
-
-
Kanhere, A.1
Viiri, K.2
Araujo, C.C.3
Rasaiyaah, J.4
Bouwman, R.D.5
Whyte, W.A.6
Pereira, C.F.7
Brookes, E.8
Walker, K.9
Bell, G.W.10
Pombo, A.11
Fisher, A.G.12
Young, R.A.13
Jenner, R.G.14
-
49
-
-
33744804277
-
The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator
-
Feng J, Bi C, Clark BS, Mady R, Shah P and Kohtz JD. The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator. Genes Dev 2006; 20: 1470-1484.
-
(2006)
Genes Dev
, vol.20
, pp. 1470-1484
-
-
Feng, J.1
Bi, C.2
Clark, B.S.3
Mady, R.4
Shah, P.5
Kohtz, J.D.6
-
50
-
-
55949136562
-
Roles of the EZH2 histone methyltransferase in cancer epigenetics
-
Simon JA, Lange CA. Roles of the EZH2 histone methyltransferase in cancer epigenetics. Mutat Res 2008; 647: 21-29.
-
(2008)
Mutat Res
, vol.647
, pp. 21-29
-
-
Simon, J.A.1
Lange, C.A.2
-
51
-
-
60549085054
-
Molecular biology: The long and short of RNAs
-
Carninci P. Molecular biology: The long and short of RNAs. Nature 2009; 457: 974-975.
-
(2009)
Nature
, vol.457
, pp. 974-975
-
-
Carninci, P.1
-
52
-
-
46649093597
-
Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription
-
Wang X, Arai S, Song X, Reichart D, Du K, Pascual G, Tempst P, Rosenfeld MG, Glass CK and Kurokawa R. Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription. Nature 2008; 454: 126-130.
-
(2008)
Nature
, vol.454
, pp. 126-130
-
-
Wang, X.1
Arai, S.2
Song, X.3
Reichart, D.4
Du, K.5
Pascual, G.6
Tempst, P.7
Rosenfeld, M.G.8
Glass, C.K.9
Kurokawa, R.10
-
53
-
-
33846930357
-
Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript
-
Martianov I, Ramadass A, Serra Barros A, Chow N and Akoulitchev A. Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript. Nature 2007; 445: 666-670.
-
(2007)
Nature
, vol.445
, pp. 666-670
-
-
Martianov, I.1
Ramadass, A.2
Serra Barros, A.3
Chow, N.4
Akoulitchev, A.5
-
54
-
-
77957243921
-
Long noncoding RNAs with enhancer-like function in human cells
-
Orom UA, Derrien T, Beringer M, Gumireddy K, Gardini A, Bussotti G, Lai F, Zytnicki M, Notredame C, Huang Q, Guigo R and Shiekhattar R. Long noncoding RNAs with enhancer-like function in human cells. Cell 2010; 143: 46-58.
-
(2010)
Cell
, vol.143
, pp. 46-58
-
-
Orom, U.A.1
Derrien, T.2
Beringer, M.3
Gumireddy, K.4
Gardini, A.5
Bussotti, G.6
Lai, F.7
Zytnicki, M.8
Notredame, C.9
Huang, Q.10
Guigo, R.11
Shiekhattar, R.12
-
56
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
Kim TK, Hemberg M, Gray JM, Costa AM, Bear DM, Wu J, Harmin DA, Laptewicz M, Barbara-Haley K, Kuersten S, Markenscoff- Papadimitriou E, Kuhl D, Bito H, Worley PF, Kreiman G and Greenberg ME. Widespread transcription at neuronal activity-regulated enhancers. Nature 2010; 465: 182-187.
-
(2010)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.K.1
Hemberg, M.2
Gray, J.M.3
Costa, A.M.4
Bear, D.M.5
Wu, J.6
Harmin, D.A.7
Laptewicz, M.8
Barbara-Haley, K.9
Kuersten, S.10
Markenscoff-Papadimitriou, E.11
Kuhl, D.12
Bito, H.13
Worley, P.F.14
Kreiman, G.15
Greenberg, M.E.16
-
57
-
-
0037673656
-
Antisense transcripts with FANTOM2 clone set and their implications for gene regulation
-
Kiyosawa H, Yamanaka I, Osato N, Kondo S and Hayashizaki Y. Antisense transcripts with FANTOM2 clone set and their implications for gene regulation. Genome Res 2003; 13: 1324-1334.
-
(2003)
Genome Res
, vol.13
, pp. 1324-1334
-
-
Kiyosawa, H.1
Yamanaka, I.2
Osato, N.3
Kondo, S.4
Hayashizaki, Y.5
-
58
-
-
33646501507
-
Natural antisense and noncoding RNA transcripts as potential drug targets
-
Wahlestedt C. Natural antisense and noncoding RNA transcripts as potential drug targets. Drug Discov Today 2006; 11: 503-508.
-
(2006)
Drug Discov Today
, vol.11
, pp. 503-508
-
-
Wahlestedt, C.1
-
60
-
-
41149112564
-
A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition
-
Beltran M, Puig I, Pena C, Garcia JM, Alvarez AB, Pena R, Bonilla F and de Herreros AG. A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition. Genes Dev 2008; 22: 756-769.
-
(2008)
Genes Dev
, vol.22
, pp. 756-769
-
-
Beltran, M.1
Puig, I.2
Pena, C.3
Garcia, J.M.4
Alvarez, A.B.5
Pena, R.6
Bonilla, F.7
de Herreros, A.G.8
-
61
-
-
74949140605
-
A noncoding antisense RNA in tie-1 locus regulates tie-1 function in vivo
-
Li K, Blum Y, Verma A, Liu Z, Pramanik K, Leigh NR, Chun CZ, Samant GV, Zhao B, Garnaas MK, Horswill MA, Stanhope SA, North PE, Miao RQ, Wilkinson GA, Affolter M and Ramchandran R. A noncoding antisense RNA in tie-1 locus regulates tie-1 function in vivo. Blood 2010; 115: 133-139.
-
(2010)
Blood
, vol.115
, pp. 133-139
-
-
Li, K.1
Blum, Y.2
Verma, A.3
Liu, Z.4
Pramanik, K.5
Leigh, N.R.6
Chun, C.Z.7
Samant, G.V.8
Zhao, B.9
Garnaas, M.K.10
Horswill, M.A.11
Stanhope, S.A.12
North, P.E.13
Miao, R.Q.14
Wilkinson, G.A.15
Affolter, M.16
Ramchandran, R.17
-
62
-
-
46749083733
-
Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase
-
Faghihi MA, Modarresi F, Khalil AM, Wood DE, Sahagan BG, Morgan TE, Finch CE, St Laurent G 3rd, Kenny PJ and Wahlestedt C. Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase. Nat Med 2008; 14: 723-730.
-
(2008)
Nat Med
, vol.14
, pp. 723-730
-
-
Faghihi, M.A.1
Modarresi, F.2
Khalil, A.M.3
Wood, D.E.4
Sahagan, B.G.5
Morgan, T.E.6
Finch, C.E.7
St Laurent III, G.8
Kenny, P.J.9
Wahlestedt, C.10
-
63
-
-
76549096350
-
Alzheimer's- related endosome dysfunction in Down syndrome is Abeta-independent but requires APP and is reversed by BACE-1 inhibition
-
Jiang Y, Mullaney KA, Peterhoff CM, Che S, Schmidt SD, Boyer-Boiteau A, Ginsberg SD, Cataldo AM, Mathews PM and Nixon RA. Alzheimer's- related endosome dysfunction in Down syndrome is Abeta-independent but requires APP and is reversed by BACE-1 inhibition. Proc Natl Acad Sci USA 2010; 107: 1630-1635.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 1630-1635
-
-
Jiang, Y.1
Mullaney, K.A.2
Peterhoff, C.M.3
Che, S.4
Schmidt, S.D.5
Boyer-Boiteau, A.6
Ginsberg, S.D.7
Cataldo, A.M.8
Mathews, P.M.9
Nixon, R.A.10
-
64
-
-
77956882723
-
A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression
-
Bernard D, Prasanth KV, Tripathi V, Colasse S, Nakamura T, Xuan Z, Zhang MQ, Sedel F, Jourdren L, Coulpier F, Triller A, Spector DL and Bessis A. A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression. Embo J 2010; 29: 3082-3093.
-
(2010)
Embo J
, vol.29
, pp. 3082-3093
-
-
Bernard, D.1
Prasanth, K.V.2
Tripathi, V.3
Colasse, S.4
Nakamura, T.5
Xuan, Z.6
Zhang, M.Q.7
Sedel, F.8
Jourdren, L.9
Coulpier, F.10
Triller, A.11
Spector, D.L.12
Bessis, A.13
-
65
-
-
69949132008
-
Paraspeckles: Nuclear bodies built on long noncoding RNA
-
Bond CS, Fox AH. Paraspeckles: nuclear bodies built on long noncoding RNA. J Cell Biol 2009; 186: 637-644.
-
(2009)
J Cell Biol
, vol.186
, pp. 637-644
-
-
Bond, C.S.1
Fox, A.H.2
-
66
-
-
77956927823
-
The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation
-
Tripathi V, Ellis JD, Shen Z, Song DY, Pan Q, Watt AT, Freier SM, Bennett CF, Sharma A, Bubulya PA, Blencowe BJ, Prasanth SG and Prasanth KV. The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol Cell 2010; 39: 925-938.
-
(2010)
Mol Cell
, vol.39
, pp. 925-938
-
-
Tripathi, V.1
Ellis, J.D.2
Shen, Z.3
Song, D.Y.4
Pan, Q.5
Watt, A.T.6
Freier, S.M.7
Bennett, C.F.8
Sharma, A.9
Bubulya, P.A.10
Blencowe, B.J.11
Prasanth, S.G.12
Prasanth, K.V.13
-
67
-
-
77953957633
-
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
-
Poliseno L, Salmena L, Zhang J, Carver B, Haveman WJ and Pandolfi PP. A coding-independent function of gene and pseudogene mRNAs regulates tumour biology. Nature 2010; 465: 1033-1038.
-
(2010)
Nature
, vol.465
, pp. 1033-1038
-
-
Poliseno, L.1
Salmena, L.2
Zhang, J.3
Carver, B.4
Haveman, W.J.5
Pandolfi, P.P.6
-
68
-
-
78049492101
-
Posttranscriptional regulation of PTEN dosage by noncoding RNAs
-
He L. Posttranscriptional regulation of PTEN dosage by noncoding RNAs. Sci Signal 2010; 3: pe39.
-
(2010)
Sci Signal
, vol.3
, pp. 39
-
-
He, L.1
-
69
-
-
80054700538
-
Coding- independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs
-
Tay Y, Kats L, Salmena L, Weiss D, Tan SM, Ala U, Karreth F, Poliseno L, Provero P, Di Cunto F, Lieberman J, Rigoutsos I and Pandolfi PP. Coding- independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs. Cell 2011; 147: 344-357.
-
(2011)
Cell
, vol.147
, pp. 344-357
-
-
Tay, Y.1
Kats, L.2
Salmena, L.3
Weiss, D.4
Tan, S.M.5
Ala, U.6
Karreth, F.7
Poliseno, L.8
Provero, P.9
Di Cunto, F.10
Lieberman, J.11
Rigoutsos, I.12
Pandolfi, P.P.13
-
70
-
-
80054681545
-
In vivo identification of tumor- suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma
-
Karreth FA, Tay Y, Perna D, Ala U, Tan SM, Rust AG, De Nicola G, Webster KA, Weiss D, Perez- Mancera PA, Krauthammer M, Halaban R, Provero P, Adams DJ, Tuveson DA and Pandolfi PP. In vivo identification of tumor- suppressive PTEN ceRNAs in an oncogenic BRAF-induced mouse model of melanoma. Cell 2011; 147: 382-395.
-
(2011)
Cell
, vol.147
, pp. 382-395
-
-
Karreth, F.A.1
Tay, Y.2
Perna, D.3
Ala, U.4
Tan, S.M.5
Rust, A.G.6
de Nicola, G.7
Webster, K.A.8
Weiss, D.9
Perez-Mancera, P.A.10
Krauthammer, M.11
Halaban, R.12
Provero, P.13
Adams, D.J.14
Tuveson, D.A.15
Pandolfi, P.P.16
-
71
-
-
80054715378
-
A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA
-
Cesana M, Cacchiarelli D, Legnini I, Santini T, Sthandier O, Chinappi M, Tramontano A and Bozzoni I. A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA. Cell 2011; 147: 358-369.
-
(2011)
Cell
, vol.147
, pp. 358-369
-
-
Cesana, M.1
Cacchiarelli, D.2
Legnini, I.3
Santini, T.4
Sthandier, O.5
Chinappi, M.6
Tramontano, A.7
Bozzoni, I.8
-
72
-
-
79961170994
-
A ceRNA hypothesis: The Rosetta Stone of a hidden RNA language?
-
Salmena L, Poliseno L, Tay Y, Kats L and Pandolfi PP. A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language? Cell 2011; 146: 353-358.
-
(2011)
Cell
, vol.146
, pp. 353-358
-
-
Salmena, L.1
Poliseno, L.2
Tay, Y.3
Kats, L.4
Pandolfi, P.P.5
-
73
-
-
24644481406
-
A strategy for probing the function of noncoding RNAs finds a repressor of NFAT
-
Willingham AT, Orth AP, Batalov S, Peters EC, Wen BG, Aza-Blanc P, Hogenesch JB and Schultz PG. A strategy for probing the function of noncoding RNAs finds a repressor of NFAT. Science 2005; 309: 1570-1573.
-
(2005)
Science
, vol.309
, pp. 1570-1573
-
-
Willingham, A.T.1
Orth, A.P.2
Batalov, S.3
Peters, E.C.4
Wen, B.G.5
Aza-Blanc, P.6
Hogenesch, J.B.7
Schultz, P.G.8
-
74
-
-
78651390167
-
Long intergenic noncoding RNAs: New links in cancer progression
-
Tsai MC, Spitale RC and Chang HY. Long intergenic noncoding RNAs: new links in cancer progression. Cancer Res 2011; 71: 3-7.
-
(2011)
Cancer Res
, vol.71
, pp. 3-7
-
-
Tsai, M.C.1
Spitale, R.C.2
Chang, H.Y.3
-
75
-
-
78651397147
-
Large non-coding RNAs: Missing links in cancer?
-
Huarte M, Rinn JL. Large non-coding RNAs: missing links in cancer? Hum Mol Genet 2010; 19: R152-161.
-
(2010)
Hum Mol Genet
, vol.19
-
-
Huarte, M.1
Rinn, J.L.2
-
76
-
-
12944252955
-
PCGEM1, a prostate-specific gene, is overexpressed in prostate cancer
-
Srikantan V, Zou Z, Petrovics G, Xu L, Augustus M, Davis L, Livezey JR, Connell T, Sesterhenn IA, Yoshino K, Buzard GS, Mostofi FK, McLeod DG, Moul JW and Srivastava S. PCGEM1, a prostate-specific gene, is overexpressed in prostate cancer. Proc Natl Acad Sci USA 2000; 97: 12216-12221.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 12216-12221
-
-
Srikantan, V.1
Zou, Z.2
Petrovics, G.3
Xu, L.4
Augustus, M.5
Davis, L.6
Livezey, J.R.7
Connell, T.8
Sesterhenn, I.A.9
Yoshino, K.10
Buzard, G.S.11
Mostofi, F.K.12
McLeod, D.G.13
Moul, J.W.14
Srivastava, S.15
-
77
-
-
10744225687
-
Elevated expression of PCGEM1, a prostate-specific gene with cell growth-promoting function, is associated with high-risk prostate cancer patients
-
Petrovics G, Zhang W, Makarem M, Street JP, Connelly R, Sun L, Sesterhenn IA, Srikantan V, Moul JW and Srivastava S. Elevated expression of PCGEM1, a prostate-specific gene with cell growth-promoting function, is associated with high-risk prostate cancer patients. Oncogene 2004; 23: 605-611.
-
(2004)
Oncogene
, vol.23
, pp. 605-611
-
-
Petrovics, G.1
Zhang, W.2
Makarem, M.3
Street, J.P.4
Connelly, R.5
Sun, L.6
Sesterhenn, I.A.7
Srikantan, V.8
Moul, J.W.9
Srivastava, S.10
-
78
-
-
33645532828
-
Regulation of apoptosis by a prostate- specific and prostate cancer-associated noncoding gene, PCGEM1
-
Fu X, Ravindranath L, Tran N, Petrovics G and Srivastava S. Regulation of apoptosis by a prostate- specific and prostate cancer-associated noncoding gene, PCGEM1. DNA Cell Biol 2006; 25: 135-141.
-
(2006)
DNA Cell Biol
, vol.25
, pp. 135-141
-
-
Fu, X.1
Ravindranath, L.2
Tran, N.3
Petrovics, G.4
Srivastava, S.5
-
79
-
-
33645823589
-
A noncoding RNA is a potential marker of cell fate during mammary gland development
-
Ginger MR, Shore AN, Contreras A, Rijnkels M, Miller J, Gonzalez-Rimbau MF and Rosen JM. A noncoding RNA is a potential marker of cell fate during mammary gland development. Proc Natl Acad Sci USA 2006; 103: 5781-5786.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 5781-5786
-
-
Ginger, M.R.1
Shore, A.N.2
Contreras, A.3
Rijnkels, M.4
Miller, J.5
Gonzalez-Rimbau, M.F.6
Rosen, J.M.7
-
80
-
-
80051574678
-
Expression and function of a large non-coding RNA gene XIST in human cancer
-
Weakley SM, Wang H, Yao Q, Chen C. Expression and function of a large non-coding RNA gene XIST in human cancer. World J Surg 2011; 35: 1751-1756.
-
(2011)
World J Surg
, vol.35
, pp. 1751-1756
-
-
Weakley, S.M.1
Wang, H.2
Yao, Q.3
Chen, C.4
-
81
-
-
0344429906
-
MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer
-
Ji P, Diederichs S, Wang W, Böing S, Metzger R, Schneider PM, Tidow N, Brandt B, Buerger H, Bulk E, Thomas M, Berdel WE, Serve H, Müller-Tidow C. MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer. Oncogene 2003; 22: 8031-8041.
-
(2003)
Oncogene
, vol.22
, pp. 8031-8041
-
-
Ji, P.1
Diederichs, S.2
Wang, W.3
Böing, S.4
Metzger, R.5
Schneider, P.M.6
Tidow, N.7
Brandt, B.8
Buerger, H.9
Bulk, E.10
Thomas, M.11
Berdel, W.E.12
Serve, H.13
Müller-Tidow, C.14
-
82
-
-
65549155761
-
A transcriptional sketch of a primary human breast cancer by 454 deep sequencing
-
Guffanti A, Iacono M, Pelucchi P, Kim N, Soldà G, Croft LJ, Taft RJ, Rizzi E, Askarian-Amiri M, Bonnal RJ, Callari M, Mignone F, Pesole G, Bertalot G, Bernardi LR, Albertini A, Lee C, Mattick JS, Zucchi I, De Bellis G. A transcriptional sketch of a primary human breast cancer by 454 deep sequencing. BMC Genomics 2009; 10: 163.
-
(2009)
BMC Genomics
, vol.10
, pp. 163
-
-
Guffanti, A.1
Iacono, M.2
Pelucchi, P.3
Kim, N.4
Soldà, G.5
Croft, L.J.6
Taft, R.J.7
Rizzi, E.8
Askarian-Amiri, M.9
Bonnal, R.J.10
Callari, M.11
Mignone, F.12
Pesole, G.13
Bertalot, G.14
Bernardi, L.R.15
Albertini, A.16
Lee, C.17
Mattick, J.S.18
Zucchi, I.19
de Bellis, G.20
more..
-
83
-
-
33846950027
-
A large noncoding RNA is a marker for murine hepatocellular carcinomas and a spectrum of human carcinomas
-
Lin R, Maeda S, Liu C, Karin M, Edgington TS. A large noncoding RNA is a marker for murine hepatocellular carcinomas and a spectrum of human carcinomas. Oncogene 2007; 26: 851-858.
-
(2007)
Oncogene
, vol.26
, pp. 851-858
-
-
Lin, R.1
Maeda, S.2
Liu, C.3
Karin, M.4
Edgington, T.S.5
-
84
-
-
33750613935
-
Transcriptomic and genomic analysis of human hepatocellular carcinomas and hepatoblastomas
-
Luo JH, Ren B, Keryanov S, Tseng GC, Rao UN, Monga SP, Strom S, Demetris AJ, Nalesnik M, Yu YP, Ranganathan S, Michalopoulos GK. Transcriptomic and genomic analysis of human hepatocellular carcinomas and hepatoblastomas. Hepatology 2006; 44: 1012-1024.
-
(2006)
Hepatology
, vol.44
, pp. 1012-1024
-
-
Luo, J.H.1
Ren, B.2
Keryanov, S.3
Tseng, G.C.4
Rao, U.N.5
Monga, S.P.6
Strom, S.7
Demetris, A.J.8
Nalesnik, M.9
Yu, Y.P.10
Ranganathan, S.11
Michalopoulos, G.K.12
-
85
-
-
81755161347
-
The long noncoding MALAT-1 RNA indicates a poor prognosis in non-small cell lung cancer and induces migration and tumor growth
-
Schmidt LH, Spieker T, Koschmieder S, Humberg J, Jungen D, Bulk E, Hascher A, Wittmer D, Marra A, Hillejan L, Wiebe K, Berdel WE, Wiewrodt R, Muller-Tidow C. The long noncoding MALAT-1 RNA indicates a poor prognosis in non-small cell lung cancer and induces migration and tumor growth. J Thorac Oncol 2011; 6: 1984-1992.
-
(2011)
J Thorac Oncol
, vol.6
, pp. 1984-1992
-
-
Schmidt, L.H.1
Spieker, T.2
Koschmieder, S.3
Humberg, J.4
Jungen, D.5
Bulk, E.6
Hascher, A.7
Wittmer, D.8
Marra, A.9
Hillejan, L.10
Wiebe, K.11
Berdel, W.E.12
Wiewrodt, R.13
Muller-Tidow, C.14
-
86
-
-
78249258719
-
MALAT-1 enhances cell motility of lung adenocarcinoma cells by influencing the expression of motilityrelated genes
-
Tano K, Mizuno R, Okada T, Rakwal R, Shibato J, Masuo Y, Ijiri K, Akimitsu N. MALAT-1 enhances cell motility of lung adenocarcinoma cells by influencing the expression of motilityrelated genes. FEBS Lett 2010; 584: 4575-4780.
-
(2010)
FEBS Lett
, vol.584
, pp. 4575-4780
-
-
Tano, K.1
Mizuno, R.2
Okada, T.3
Rakwal, R.4
Shibato, J.5
Masuo, Y.6
Ijiri, K.7
Akimitsu, N.8
-
87
-
-
78650200618
-
Association of a novel long non-coding RNA in 8q24 with prostate cancer susceptibility
-
Chung S, Nakagawa H, Uemura M, Piao L, Ashikawa K, Hosono N, Takata R, Akamatsu S, Kawaguchi T, Morizono T, Tsunoda T, Daigo Y, Matsuda K, Kamatani N, Nakamura Y and Kubo M. Association of a novel long non-coding RNA in 8q24 with prostate cancer susceptibility. Cancer Sci 2011; 102: 245-252.
-
(2011)
Cancer Sci
, vol.102
, pp. 245-252
-
-
Chung, S.1
Nakagawa, H.2
Uemura, M.3
Piao, L.4
Ashikawa, K.5
Hosono, N.6
Takata, R.7
Akamatsu, S.8
Kawaguchi, T.9
Morizono, T.10
Tsunoda, T.11
Daigo, Y.12
Matsuda, K.13
Kamatani, N.14
Nakamura, Y.15
Kubo, M.16
-
88
-
-
77952952164
-
Identification of long stress-induced non-coding transcripts that have altered expression in cancer
-
Silva JM, Perez DS, Pritchett JR, Halling ML, Tang H and Smith DI. Identification of long stress-induced non-coding transcripts that have altered expression in cancer. Genomics 2010; 95: 355-362.
-
(2010)
Genomics
, vol.95
, pp. 355-362
-
-
Silva, J.M.1
Perez, D.S.2
Pritchett, J.R.3
Halling, M.L.4
Tang, H.5
Smith, D.I.6
-
89
-
-
79955836034
-
Overexpression of Long Noncoding RNA HOTAIR Predicts Tumor Recurrence in Hepatocellular Carcinoma Patients Following Liver Transplantation
-
Yang Z, Zhou L, Wu LM, Lai MC, Xie HY, Zhang F and Zheng SS. Overexpression of Long Noncoding RNA HOTAIR Predicts Tumor Recurrence in Hepatocellular Carcinoma Patients Following Liver Transplantation. Ann Surg Oncol 2011; 18: 1243-1250.
-
(2011)
Ann Surg Oncol
, vol.18
, pp. 1243-1250
-
-
Yang, Z.1
Zhou, L.2
Wu, L.M.3
Lai, M.C.4
Xie, H.Y.5
Zhang, F.6
Zheng, S.S.7
-
90
-
-
1042278765
-
The history of cancer epigenetics
-
Feinberg AP, Tycko B. The history of cancer epigenetics. Nat Rev Cancer 2004; 4: 143-153.
-
(2004)
Nat Rev Cancer
, vol.4
, pp. 143-153
-
-
Feinberg, A.P.1
Tycko, B.2
-
91
-
-
0024518392
-
Genetic linkage of Beckwith-Wiedemann syndrome to 11p15
-
Ping AJ, Reeve AE, Law DJ, Young MR, Boehnke M and Feinberg AP. Genetic linkage of Beckwith-Wiedemann syndrome to 11p15. Am J Hum Genet 1989; 44: 720-723.
-
(1989)
Am J Hum Genet
, vol.44
, pp. 720-723
-
-
Ping, A.J.1
Reeve, A.E.2
Law, D.J.3
Young, M.R.4
Boehnke, M.5
Feinberg, A.P.6
-
92
-
-
0024517062
-
Familial Wiedemann-Beckwith syndrome and a second Wilms tumor locus both map to 11p15.5
-
Koufos A, Grundy P, Morgan K, Aleck KA, Hadro T, Lampkin BC, Kalbakji A and Cavenee WK. Familial Wiedemann-Beckwith syndrome and a second Wilms tumor locus both map to 11p15.5. Am J Hum Genet 1989; 44: 711-719.
-
(1989)
Am J Hum Genet
, vol.44
, pp. 711-719
-
-
Koufos, A.1
Grundy, P.2
Morgan, K.3
Aleck, K.A.4
Hadro, T.5
Lampkin, B.C.6
Kalbakji, A.7
Cavenee, W.K.8
-
93
-
-
18244369516
-
Tumor development in the Beckwith- Wiedemann syndrome is associated with a variety of constitutional molecular 11p15 alterations including imprinting defects of KCNQ1OT1
-
Weksberg R, Nishikawa J, Caluseriu O, Fei YL, Shuman C, Wei C, Steele L, Cameron J, Smith A, Ambus I, Li M, Ray PN, Sadowski P and Squire J. Tumor development in the Beckwith- Wiedemann syndrome is associated with a variety of constitutional molecular 11p15 alterations including imprinting defects of KCNQ1OT1. Hum Mol Genet 2001; 10: 2989-3000.
-
(2001)
Hum Mol Genet
, vol.10
, pp. 2989-3000
-
-
Weksberg, R.1
Nishikawa, J.2
Caluseriu, O.3
Fei, Y.L.4
Shuman, C.5
Wei, C.6
Steele, L.7
Cameron, J.8
Smith, A.9
Ambus, I.10
Li, M.11
Ray, P.N.12
Sadowski, P.13
Squire, J.14
-
94
-
-
0033975096
-
Beckwith-Wiedemann syndrome: Imprinting in clusters revisited
-
Maher ER, Reik W. Beckwith-Wiedemann syndrome: imprinting in clusters revisited. J Clin Invest 2000; 105: 247-252.
-
(2000)
J Clin Invest
, vol.105
, pp. 247-252
-
-
Maher, E.R.1
Reik, W.2
-
95
-
-
0034967806
-
Analysis of the methylation status of the KCNQ1OT and H19 genes in leukocyte DNA for the diagnosis and prognosis of Beckwith- Wiedemann syndrome
-
Gaston V, Le Bouc Y, Soupre V, Burglen L, Donadieu J, Oro H, Audry G, Vazquez MP and Gicquel C. Analysis of the methylation status of the KCNQ1OT and H19 genes in leukocyte DNA for the diagnosis and prognosis of Beckwith- Wiedemann syndrome. Eur J Hum Genet 2001; 9: 409-418.
-
(2001)
Eur J Hum Genet
, vol.9
, pp. 409-418
-
-
Gaston, V.1
le Bouc, Y.2
Soupre, V.3
Burglen, L.4
Donadieu, J.5
Oro, H.6
Audry, G.7
Vazquez, M.P.8
Gicquel, C.9
-
96
-
-
0032813924
-
LIT1, an imprinted antisense RNA in the human KvLQT1 locus identified by screening for differentially expressed transcripts using monochromosomal hybrids
-
Mitsuya K, Meguro M, Lee MP, Katoh M, Schulz TC, Kugoh H, Yoshida MA, Niikawa N, Feinberg AP and Oshimura M. LIT1, an imprinted antisense RNA in the human KvLQT1 locus identified by screening for differentially expressed transcripts using monochromosomal hybrids. Hum Mol Genet 1999; 8: 1209-1217.
-
(1999)
Hum Mol Genet
, vol.8
, pp. 1209-1217
-
-
Mitsuya, K.1
Meguro, M.2
Lee, M.P.3
Katoh, M.4
Schulz, T.C.5
Kugoh, H.6
Yoshida, M.A.7
Niikawa, N.8
Feinberg, A.P.9
Oshimura, M.10
-
97
-
-
0033609117
-
Loss of imprinting of a paternally expressed transcript, with antisense orientation to KVLQT1, occurs frequently in Beckwith- Wiedemann syndrome and is independent of insulin-like growth factor II imprinting
-
Lee MP, De Baun MR, Mitsuya K, Galonek HL, Brandenburg S, Oshimura M and Feinberg AP. Loss of imprinting of a paternally expressed transcript, with antisense orientation to KVLQT1, occurs frequently in Beckwith- Wiedemann syndrome and is independent of insulin-like growth factor II imprinting. Proc Natl Acad Sci USA 1999; 96: 5203-5208.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 5203-5208
-
-
Lee, M.P.1
de Baun, M.R.2
Mitsuya, K.3
Galonek, H.L.4
Brandenburg, S.5
Oshimura, M.6
Feinberg, A.P.7
-
98
-
-
33748937737
-
Expression profile of LIT1/KCNQ1OT1 and epigenetic status at the KvDMR1 in colorectal cancers
-
Nakano S, Murakami K, Meguro M, Soejima H, Higashimoto K, Urano T, Kugoh H, Mukai T, Ikeguchi M and Oshimura M. Expression profile of LIT1/KCNQ1OT1 and epigenetic status at the KvDMR1 in colorectal cancers. Cancer Sci 2006; 97: 1147-1154.
-
(2006)
Cancer Sci
, vol.97
, pp. 1147-1154
-
-
Nakano, S.1
Murakami, K.2
Meguro, M.3
Soejima, H.4
Higashimoto, K.5
Urano, T.6
Kugoh, H.7
Mukai, T.8
Ikeguchi, M.9
Oshimura, M.10
-
99
-
-
0034284693
-
Targeted disruption of the human LIT1 locus defines a putative imprinting control element playing an essential role in Beckwith-Wiedemann syndrome
-
Horike S, Mitsuya K, Meguro M, Kotobuki N, Kashiwagi A, Notsu T, Schulz TC, Shirayoshi Y and Oshimura M. Targeted disruption of the human LIT1 locus defines a putative imprinting control element playing an essential role in Beckwith-Wiedemann syndrome. Hum Mol Genet 2000; 9: 2075-2083.
-
(2000)
Hum Mol Genet
, vol.9
, pp. 2075-2083
-
-
Horike, S.1
Mitsuya, K.2
Meguro, M.3
Kotobuki, N.4
Kashiwagi, A.5
Notsu, T.6
Schulz, T.C.7
Shirayoshi, Y.8
Oshimura, M.9
-
100
-
-
2642519400
-
Silencing of imprinted CDKN1C gene expression is associated with loss of CpG and histone H3 lysine 9 methylation at DMR-LIT1 in esophageal cancer
-
Soejima H, Nakagawachi T, Zhao W, Higashimoto K, Urano T, Matsukura S, Kitajima Y, Takeuchi M, Nakayama M, Oshimura M, Miyazaki K, Joh K and Mukai T. Silencing of imprinted CDKN1C gene expression is associated with loss of CpG and histone H3 lysine 9 methylation at DMR-LIT1 in esophageal cancer. Oncogene 2004; 23: 4380-4388.
-
(2004)
Oncogene
, vol.23
, pp. 4380-4388
-
-
Soejima, H.1
Nakagawachi, T.2
Zhao, W.3
Higashimoto, K.4
Urano, T.5
Matsukura, S.6
Kitajima, Y.7
Takeuchi, M.8
Nakayama, M.9
Oshimura, M.10
Miyazaki, K.11
Joh, K.12
Mukai, T.13
-
101
-
-
84863116815
-
Breast Cancer Special Feature: Altered antisense-to-sense transcript ratios in breast cancer
-
Maruyama R, Shipitsin M, Choudhury S, Wu Z, Protopopov A, Yao J, Lo PK, Bessarabova M, Ishkin A, Nikolsky Y, Liu XS, Sukumar S and Polyak K. Breast Cancer Special Feature: Altered antisense-to-sense transcript ratios in breast cancer. Proc Natl Acad Sci USA 2012; 109: 2820-2824.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 2820-2824
-
-
Maruyama, R.1
Shipitsin, M.2
Choudhury, S.3
Wu, Z.4
Protopopov, A.5
Yao, J.6
Lo, P.K.7
Bessarabova, M.8
Ishkin, A.9
Nikolsky, Y.10
Liu, X.S.11
Sukumar, S.12
Polyak, K.13
-
102
-
-
68849101462
-
Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues
-
Grigoriadis A, Oliver GR, Tanney A, Kendrick H, Smalley MJ, Jat P and Neville AM. Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues. BMC Genomics 2009; 10: 324.
-
(2009)
BMC Genomics
, vol.10
, pp. 324
-
-
Grigoriadis, A.1
Oliver, G.R.2
Tanney, A.3
Kendrick, H.4
Smalley, M.J.5
Jat, P.6
Neville, A.M.7
-
103
-
-
70349571889
-
Identification of novel endogenous antisense transcripts by DNA microarray analysis targeting complementary strand of annotated genes
-
Numata K, Osada Y, Okada Y, Saito R, Hiraiwa N, Nakaoka H, Yamamoto N, Watanabe K, Okubo K, Kohama C, Kanai A, Abe K and Kiyosawa H. Identification of novel endogenous antisense transcripts by DNA microarray analysis targeting complementary strand of annotated genes. BMC Genomics 2009; 10: 392.
-
(2009)
BMC Genomics
, vol.10
, pp. 392
-
-
Numata, K.1
Osada, Y.2
Okada, Y.3
Saito, R.4
Hiraiwa, N.5
Nakaoka, H.6
Yamamoto, N.7
Watanabe, K.8
Okubo, K.9
Kohama, C.10
Kanai, A.11
Abe, K.12
Kiyosawa, H.13
-
104
-
-
78649964695
-
Identification of natural antisense transcripts involved in human colorectal cancer development
-
Kohno K, Chiba M, Murata S, Pak S, Nagai K, Yamamoto M, Yanagisawa K, Kobayashi A, Yasue H and Ohkohchi N. Identification of natural antisense transcripts involved in human colorectal cancer development. Int J Oncol 2010; 37: 1425-1432.
-
(2010)
Int J Oncol
, vol.37
, pp. 1425-1432
-
-
Kohno, K.1
Chiba, M.2
Murata, S.3
Pak, S.4
Nagai, K.5
Yamamoto, M.6
Yanagisawa, K.7
Kobayashi, A.8
Yasue, H.9
Ohkohchi, N.10
-
105
-
-
67649451972
-
In silico prediction and experimental validation of natural antisense transcripts in two cancerassociated regions of human chromosome 6
-
Monti L, Cinquetti R, Guffanti A, Nicassio F, Cremona M, Lavorgna G, Bianchi F, Vignati F, Cittaro D, Taramelli R and Acquati F. In silico prediction and experimental validation of natural antisense transcripts in two cancerassociated regions of human chromosome 6. Int J Oncol 2009; 34: 1099-1108.
-
(2009)
Int J Oncol
, vol.34
, pp. 1099-1108
-
-
Monti, L.1
Cinquetti, R.2
Guffanti, A.3
Nicassio, F.4
Cremona, M.5
Lavorgna, G.6
Bianchi, F.7
Vignati, F.8
Cittaro, D.9
Taramelli, R.10
Acquati, F.11
-
106
-
-
4444364003
-
Antisense intronic noncoding RNA levels correlate to the degree of tumor differentiation in prostate cancer
-
Reis EM, Nakaya HI, Louro R, Canavez FC, Flatschart AV, Almeida GT, Egidio CM, Paquola AC, Machado AA, Festa F, Yamamoto D, Alvarenga R, da Silva CC, Brito GC, Simon SD, Moreira-Filho CA, Leite KR, Camara-Lopes LH, Campos FS, Gimba E, Vignal GM, El-Dorry H, Sogayar MC, Barcinski MA, da Silva AM and Verjovski-Almeida S. Antisense intronic noncoding RNA levels correlate to the degree of tumor differentiation in prostate cancer. Oncogene 2004; 23: 6684-6692.
-
(2004)
Oncogene
, vol.23
, pp. 6684-6692
-
-
Reis, E.M.1
Nakaya, H.I.2
Louro, R.3
Canavez, F.C.4
Flatschart, A.V.5
Almeida, G.T.6
Egidio, C.M.7
Paquola, A.C.8
Machado, A.A.9
Festa, F.10
Yamamoto, D.11
Alvarenga, R.12
da Silva, C.C.13
Brito, G.C.14
Simon, S.D.15
Moreira-Filho, C.A.16
Leite, K.R.17
Camara-Lopes, L.H.18
Campos, F.S.19
Gimba, E.20
Vignal, G.M.21
El-Dorry, H.22
Sogayar, M.C.23
Barcinski, M.A.24
da Silva, A.M.25
Verjovski-Almeida, S.26
more..
-
107
-
-
38049155825
-
Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA
-
Yu W, Gius D, Onyango P, Muldoon-Jacobs K, Karp J, Feinberg AP and Cui H. Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA. Nature 2008; 451: 202-206.
-
(2008)
Nature
, vol.451
, pp. 202-206
-
-
Yu, W.1
Gius, D.2
Onyango, P.3
Muldoon-Jacobs, K.4
Karp, J.5
Feinberg, A.P.6
Cui, H.7
-
108
-
-
53749086981
-
Selective loss of MEG3 expression and intergenic differentially methylated region hypermethylation in the MEG3/DLK1 locus in human clinically nonfunctioning pituitary adenomas
-
Gejman R, Batista DL, Zhong Y, Zhou Y, Zhang X, Swearingen B, Stratakis CA, Hedley-Whyte ET and Klibanski A. Selective loss of MEG3 expression and intergenic differentially methylated region hypermethylation in the MEG3/DLK1 locus in human clinically nonfunctioning pituitary adenomas. J Clin Endocrinol Metab 2008; 93: 4119-4125.
-
(2008)
J Clin Endocrinol Metab
, vol.93
, pp. 4119-4125
-
-
Gejman, R.1
Batista, D.L.2
Zhong, Y.3
Zhou, Y.4
Zhang, X.5
Swearingen, B.6
Stratakis, C.A.7
Hedley-Whyte, E.T.8
Klibanski, A.9
-
109
-
-
77950193818
-
Maternally expressed gene 3, an imprinted noncoding RNA gene, is associated with meningioma pathogenesis and progression
-
Zhang X, Gejman R, Mahta A, Zhong Y, Rice KA, Zhou Y, Cheunsuchon P, Louis DN and Klibanski A. Maternally expressed gene 3, an imprinted noncoding RNA gene, is associated with meningioma pathogenesis and progression. Cancer Res 2010; 70: 2350-2358.
-
(2010)
Cancer Res
, vol.70
, pp. 2350-2358
-
-
Zhang, X.1
Gejman, R.2
Mahta, A.3
Zhong, Y.4
Rice, K.A.5
Zhou, Y.6
Cheunsuchon, P.7
Louis, D.N.8
Klibanski, A.9
-
111
-
-
34548304069
-
Activation of p53 by MEG3 noncoding RNA
-
Zhou Y, Zhong Y, Wang Y, Zhang X, Batista DL, Gejman R, Ansell PJ, Zhao J, Weng C and Klibanski A. Activation of p53 by MEG3 noncoding RNA. J Biol Chem 2007; 282: 24731-24742.
-
(2007)
J Biol Chem
, vol.282
, pp. 24731-24742
-
-
Zhou, Y.1
Zhong, Y.2
Wang, Y.3
Zhang, X.4
Batista, D.L.5
Gejman, R.6
Ansell, P.J.7
Zhao, J.8
Weng, C.9
Klibanski, A.10
-
112
-
-
77149157495
-
Maternally expressed gene 3 (MEG3) noncoding ribonucleic acid: Isoform structure, expression, and functions
-
Zhang X, Rice K, Wang Y, Chen W, Zhong Y, Nakayama Y, Zhou Y and Klibanski A. Maternally expressed gene 3 (MEG3) noncoding ribonucleic acid: isoform structure, expression, and functions. Endocrinology 2010; 151: 939-947.
-
(2010)
Endocrinology
, vol.151
, pp. 939-947
-
-
Zhang, X.1
Rice, K.2
Wang, Y.3
Chen, W.4
Zhong, Y.5
Nakayama, Y.6
Zhou, Y.7
Klibanski, A.8
-
113
-
-
77955323879
-
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
-
Huarte M, Guttman M, Feldser D, Garber M, Koziol MJ, Kenzelmann-Broz D, Khalil AM, Zuk O, Amit I, Rabani M, Attardi LD, Regev A, Lander ES, Jacks T and Rinn JL. A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell 2010; 142: 409-419.
-
(2010)
Cell
, vol.142
, pp. 409-419
-
-
Huarte, M.1
Guttman, M.2
Feldser, D.3
Garber, M.4
Koziol, M.J.5
Kenzelmann-Broz, D.6
Khalil, A.M.7
Zuk, O.8
Amit, I.9
Rabani, M.10
Attardi, L.D.11
Regev, A.12
Lander, E.S.13
Jacks, T.14
Rinn, J.L.15
-
114
-
-
43149098277
-
Growth arrest in human T-cells is controlled by the non-coding RNA growth-arrest-specific transcript 5 (GAS5)
-
Mourtada-Maarabouni M, Hedge VL, Kirkham L, Farzaneh F and Williams GT. Growth arrest in human T-cells is controlled by the non-coding RNA growth-arrest-specific transcript 5 (GAS5). J Cell Sci 2008; 121: 939-946.
-
(2008)
J Cell Sci
, vol.121
, pp. 939-946
-
-
Mourtada-Maarabouni, M.1
Hedge, V.L.2
Kirkham, L.3
Farzaneh, F.4
Williams, G.T.5
-
115
-
-
58249098615
-
GAS5, a nonprotein- coding RNA, controls apoptosis and is downregulated in breast cancer
-
Mourtada-Maarabouni M, Pickard MR, Hedge VL, Farzaneh F and Williams GT. GAS5, a nonprotein- coding RNA, controls apoptosis and is downregulated in breast cancer. Oncogene 2009; 28: 195-208.
-
(2009)
Oncogene
, vol.28
, pp. 195-208
-
-
Mourtada-Maarabouni, M.1
Pickard, M.R.2
Hedge, V.L.3
Farzaneh, F.4
Williams, G.T.5
-
116
-
-
77951638287
-
Noncoding RNA gas5 is a growth arrestand starvation-associated repressor of the glucocorticoid receptor
-
Kino T, Hurt DE, Ichijo T, Nader N and Chrousos GP. Noncoding RNA gas5 is a growth arrestand starvation-associated repressor of the glucocorticoid receptor. Sci Signal 2010; 3: ra8.
-
(2010)
Sci Signal
, vol.3
, pp. 8
-
-
Kino, T.1
Hurt, D.E.2
Ichijo, T.3
Nader, N.4
Chrousos, G.P.5
-
117
-
-
67649352637
-
Nuclear cyclin D1: An oncogenic driver in human cancer
-
Kim JK, Diehl JA. Nuclear cyclin D1: an oncogenic driver in human cancer. J Cell Physiol 2009; 220: 292-296.
-
(2009)
J Cell Physiol
, vol.220
, pp. 292-296
-
-
Kim, J.K.1
Diehl, J.A.2
-
118
-
-
77955844757
-
TERRA biogenesis, turnover and implications for function
-
Feuerhahn S, Iglesias N, Panza A, Porro A and Lingner J. TERRA biogenesis, turnover and implications for function. FEBS Lett 2010; 584: 3812-3818.
-
(2010)
FEBS Lett
, vol.584
, pp. 3812-3818
-
-
Feuerhahn, S.1
Iglesias, N.2
Panza, A.3
Porro, A.4
Lingner, J.5
-
119
-
-
85011937494
-
Transcriptional regulation of telomeric non-coding RNA: Implications on telomere biology, replicative senescence and cancer
-
Caslini C. Transcriptional regulation of telomeric non-coding RNA: implications on telomere biology, replicative senescence and cancer. RNA Biol 2010; 7: 18-22.
-
(2010)
RNA Biol
, vol.7
, pp. 18-22
-
-
Caslini, C.1
-
120
-
-
69849104275
-
TERRA: Telomeric repeatcontaining RNA
-
Luke B, Lingner J. TERRA: telomeric repeatcontaining RNA. Embo J 2009; 28: 2503-2510.
-
(2009)
Embo J
, vol.28
, pp. 2503-2510
-
-
Luke, B.1
Lingner, J.2
-
121
-
-
62549122535
-
Telomerase activity is associated with an increase in DNA methylation at the proximal subtelomere and a reduction in telomeric transcription
-
Ng LJ, Cropley JE, Pickett HA, Reddel RR and Suter CM. Telomerase activity is associated with an increase in DNA methylation at the proximal subtelomere and a reduction in telomeric transcription. Nucleic Acids Res 2009; 37: 1152-1159.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1152-1159
-
-
Ng, L.J.1
Cropley, J.E.2
Pickett, H.A.3
Reddel, R.R.4
Suter, C.M.5
-
122
-
-
77952581350
-
Long non-coding RNAs in nervous system function and disease
-
Qureshi IA, Mattick JS and Mehler MF. Long non-coding RNAs in nervous system function and disease. Brain Res 2010; 1338: 20-35.
-
(2010)
Brain Res
, vol.1338
, pp. 20-35
-
-
Qureshi, I.A.1
Mattick, J.S.2
Mehler, M.F.3
-
123
-
-
80755187776
-
Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk
-
Jin G, Sun J, Isaacs SD, Wiley KE, Kim ST, Chu LW, Zhang Z, Zhao H, Zheng SL, Isaacs WB and Xu J. Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk. Carcinogenesis 2011; 32: 1655-1659.
-
(2011)
Carcinogenesis
, vol.32
, pp. 1655-1659
-
-
Jin, G.1
Sun, J.2
Isaacs, S.D.3
Wiley, K.E.4
Kim, S.T.5
Chu, L.W.6
Zhang, Z.7
Zhao, H.8
Zheng, S.L.9
Isaacs, W.B.10
Xu, J.11
-
124
-
-
0344429906
-
MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer
-
Ji P, Diederichs S, Wang W, Boing S, Metzger R, Schneider PM, Tidow N, Brandt B, Buerger H, Bulk E, Thomas M, Berdel WE, Serve H and Muller-Tidow C. MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer. Oncogene 2003; 22: 8031-8041.
-
(2003)
Oncogene
, vol.22
, pp. 8031-8041
-
-
Ji, P.1
Diederichs, S.2
Wang, W.3
Boing, S.4
Metzger, R.5
Schneider, P.M.6
Tidow, N.7
Brandt, B.8
Buerger, H.9
Bulk, E.10
Thomas, M.11
Berdel, W.E.12
Serve, H.13
Muller-Tidow, C.14
-
125
-
-
81055150443
-
Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer
-
Tahira AC, Kubrusly MS, Faria MF, Dazzani B, Fonseca RS, Maracaja-Coutinho V, Verjovski-Almeida S, Machado MC and Reis EM. Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer. Mol Cancer 2011; 10: 141.
-
(2011)
Mol Cancer
, vol.10
, pp. 141
-
-
Tahira, A.C.1
Kubrusly, M.S.2
Faria, M.F.3
Dazzani, B.4
Fonseca, R.S.5
Maracaja-Coutinho, V.6
Verjovski-Almeida, S.7
Machado, M.C.8
Reis, E.M.9
-
126
-
-
3943107461
-
Role of a neuronal small non-messenger RNA: Behavioural alterations in BC1 RNA-deleted mice
-
Lewejohann L, Skryabin BV, Sachser N, Prehn C, Heiduschka P, Thanos S, Jordan U, Dell'Omo G, Vyssotski AL, Pleskacheva MG, Lipp HP, Tiedge H, Brosius J and Prior H. Role of a neuronal small non-messenger RNA: behavioural alterations in BC1 RNA-deleted mice. Behav Brain Res 2004; 154: 273-289.
-
(2004)
Behav Brain Res
, vol.154
, pp. 273-289
-
-
Lewejohann, L.1
Skryabin, B.V.2
Sachser, N.3
Prehn, C.4
Heiduschka, P.5
Thanos, S.6
Jordan, U.7
Dell'Omo, G.8
Vyssotski, A.L.9
Pleskacheva, M.G.10
Lipp, H.P.11
Tiedge, H.12
Brosius, J.13
Prior, H.14
-
127
-
-
78649524251
-
Regulatory BC1 RNA and the fragile X mental retardation protein: Convergent functionality in brain
-
Zhong J, Chuang SC, Bianchi R, Zhao W, Paul G, Thakkar P, Liu D, Fenton AA, Wong RK and Tiedge H. Regulatory BC1 RNA and the fragile X mental retardation protein: convergent functionality in brain. PLoS One 2010; 5: e15509.
-
(2010)
PLoS One
, vol.5
-
-
Zhong, J.1
Chuang, S.C.2
Bianchi, R.3
Zhao, W.4
Paul, G.5
Thakkar, P.6
Liu, D.7
Fenton, A.A.8
Wong, R.K.9
Tiedge, H.10
-
128
-
-
38649115963
-
On BC1 RNA and the fragile X mental retardation protein
-
Iacoangeli A, Rozhdestvensky TS, Dolzhanskaya N, Tournier B, Schutt J, Brosius J, Denman RB, Khandjian EW, Kindler S and Tiedge H. On BC1 RNA and the fragile X mental retardation protein. Proc Natl Acad Sci USA 2008; 105: 734-739.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 734-739
-
-
Iacoangeli, A.1
Rozhdestvensky, T.S.2
Dolzhanskaya, N.3
Tournier, B.4
Schutt, J.5
Brosius, J.6
Denman, R.B.7
Khandjian, E.W.8
Kindler, S.9
Tiedge, H.10
-
129
-
-
33745545413
-
Bidirectional expression of CUG and CAG expansion transcripts and intranuclear polyglutamine inclusions in spinocerebellar ataxia type 8
-
Moseley ML, Zu T, Ikeda Y, Gao W, Mosemiller AK, Daughters RS, Chen G, Weatherspoon MR, Clark HB, Ebner TJ, Day JW and Ranum LP. Bidirectional expression of CUG and CAG expansion transcripts and intranuclear polyglutamine inclusions in spinocerebellar ataxia type 8. Nat Genet 2006; 38: 758-769.
-
(2006)
Nat Genet
, vol.38
, pp. 758-769
-
-
Moseley, M.L.1
Zu, T.2
Ikeda, Y.3
Gao, W.4
Mosemiller, A.K.5
Daughters, R.S.6
Chen, G.7
Weatherspoon, M.R.8
Clark, H.B.9
Ebner, T.J.10
Day, J.W.11
Ranum, L.P.12
-
130
-
-
33749170168
-
Targeted deletion of a single Sca8 ataxia locus allele in mice causes abnormal gait, progressive loss of motor coordination, and Purkinje cell dendritic deficits
-
He Y, Zu T, Benzow KA, Orr HT, Clark HB and Koob MD. Targeted deletion of a single Sca8 ataxia locus allele in mice causes abnormal gait, progressive loss of motor coordination, and Purkinje cell dendritic deficits. J Neurosci 2006; 26: 9975-9982.
-
(2006)
J Neurosci
, vol.26
, pp. 9975-9982
-
-
He, Y.1
Zu, T.2
Benzow, K.A.3
Orr, H.T.4
Clark, H.B.5
Koob, M.D.6
-
131
-
-
0032900772
-
An untranslated CTG expansion causes a novel form of spinocerebellar ataxia (SCA8)
-
Koob MD, Moseley ML, Schut LJ, Benzow KA, Bird TD, Day JW and Ranum LP. An untranslated CTG expansion causes a novel form of spinocerebellar ataxia (SCA8). Nat Genet 1999; 21: 379-384.
-
(1999)
Nat Genet
, vol.21
, pp. 379-384
-
-
Koob, M.D.1
Moseley, M.L.2
Schut, L.J.3
Benzow, K.A.4
Bird, T.D.5
Day, J.W.6
Ranum, L.P.7
-
132
-
-
70149112363
-
RNA gain-of-function in spinocerebellar ataxia type 8
-
Daughters RS, Tuttle DL, Gao W, Ikeda Y, Moseley ML, Ebner TJ, Swanson MS and Ranum LP. RNA gain-of-function in spinocerebellar ataxia type 8. PLoS Genet 2009; 5: e1000600.
-
(2009)
PLoS Genet
, vol.5
-
-
Daughters, R.S.1
Tuttle, D.L.2
Gao, W.3
Ikeda, Y.4
Moseley, M.L.5
Ebner, T.J.6
Swanson, M.S.7
Ranum, L.P.8
-
133
-
-
76249108851
-
Catalogues of mammalian long noncoding RNAs: Modest conservation and incompleteness
-
Marques AC and Ponting CP. Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness. Genome Biol 2009; 10: R124.
-
(2009)
Genome Biol
, vol.10
-
-
Marques, A.C.1
Ponting, C.P.2
-
134
-
-
34248162440
-
Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
-
Ponjavic J, Ponting CP and Lunter G. Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs. Genome Res 2007; 17: 556-565.
-
(2007)
Genome Res
, vol.17
, pp. 556-565
-
-
Ponjavic, J.1
Ponting, C.P.2
Lunter, G.3
-
135
-
-
78751474118
-
Non-coding RNAs as regulators of embryogenesis
-
Pauli A, Rinn JL and Schier AF. Non-coding RNAs as regulators of embryogenesis. Nat Rev Genet 2011; 12: 136-149.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 136-149
-
-
Pauli, A.1
Rinn, J.L.2
Schier, A.F.3
-
136
-
-
79957557521
-
Xchromosome epigenetic reprogramming in pluripotent stem cells via noncoding genes
-
Kim DH, Jeon Y, Anguera MC and Lee JT. Xchromosome epigenetic reprogramming in pluripotent stem cells via noncoding genes. Semin Cell Dev Biol 2011; 22: 336-342.
-
(2011)
Semin Cell Dev Biol
, vol.22
, pp. 336-342
-
-
Kim, D.H.1
Jeon, Y.2
Anguera, M.C.3
Lee, J.T.4
-
137
-
-
56249140090
-
Enhanced reprogramming of Xist by induced upregulation of Tsix and Dnmt3a
-
Do JT, Han DW, Gentile L, Sobek-Klocke I, Stehling M and Scholer HR. Enhanced reprogramming of Xist by induced upregulation of Tsix and Dnmt3a. Stem Cells 2008; 26: 2821-2831.
-
(2008)
Stem Cells
, vol.26
, pp. 2821-2831
-
-
Do, J.T.1
Han, D.W.2
Gentile, L.3
Sobek-Klocke, I.4
Stehling, M.5
Scholer, H.R.6
-
138
-
-
78249235609
-
The epigenetic role of non-coding RNA transcription and nuclear organization in immunoglobulin repertoire generation
-
Corcoran AE. The epigenetic role of non-coding RNA transcription and nuclear organization in immunoglobulin repertoire generation. Semin Immunol 2010; 22: 353-361.
-
(2010)
Semin Immunol
, vol.22
, pp. 353-361
-
-
Corcoran, A.E.1
-
139
-
-
78549258489
-
Molecular coupling of Tsix regulation and pluripotency
-
Navarro P, Oldfield A, Legoupi J, Festuccia N, Dubois A, Attia M, Schoorlemmer J, Rougeulle C, Chambers I and Avner P. Molecular coupling of Tsix regulation and pluripotency. Nature 2010; 468: 457-460.
-
(2010)
Nature
, vol.468
, pp. 457-460
-
-
Navarro, P.1
Oldfield, A.2
Legoupi, J.3
Festuccia, N.4
Dubois, A.5
Attia, M.6
Schoorlemmer, J.7
Rougeulle, C.8
Chambers, I.9
Avner, P.10
-
140
-
-
63849156246
-
A myelopoiesis- associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster
-
Zhang X, Lian Z, Padden C, Gerstein MB, Rozowsky J, Snyder M, Gingeras TR, Kapranov P, Weissman SM and Newburger PE. A myelopoiesis- associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster. Blood 2009; 113: 2526-2534.
-
(2009)
Blood
, vol.113
, pp. 2526-2534
-
-
Zhang, X.1
Lian, Z.2
Padden, C.3
Gerstein, M.B.4
Rozowsky, J.5
Snyder, M.6
Gingeras, T.R.7
Kapranov, P.8
Weissman, S.M.9
Newburger, P.E.10
-
141
-
-
2942617210
-
Developmental regulation of EVF-1, a novel non-coding RNA transcribed upstream of the mouse Dlx6 gene
-
Kohtz JD, Fishell G. Developmental regulation of EVF-1, a novel non-coding RNA transcribed upstream of the mouse Dlx6 gene. Gene Expr Patterns 2004; 4: 407-412.
-
(2004)
Gene Expr Patterns
, vol.4
, pp. 407-412
-
-
Kohtz, J.D.1
Fishell, G.2
-
142
-
-
44449098601
-
UCA1, a non-protein-coding RNA up-regulated in bladder carcinoma and embryo, influencing cell growth and promoting invasion
-
Wang F, Li X, Xie X, Zhao L and Chen W. UCA1, a non-protein-coding RNA up-regulated in bladder carcinoma and embryo, influencing cell growth and promoting invasion. FEBS Lett 2008; 582: 1919-1927.
-
(2008)
FEBS Lett
, vol.582
, pp. 1919-1927
-
-
Wang, F.1
Li, X.2
Xie, X.3
Zhao, L.4
Chen, W.5
-
143
-
-
33748337949
-
Rapid identification of UCA1 as a very sensitive and specific unique marker for human bladder carcinoma
-
Wang XS, Zhang Z, Wang HC, Cai JL, Xu QW, Li MQ, Chen YC, Qian XP, Lu TJ, Yu LZ, Zhang Y, Xin DQ, Na YQ and Chen WF. Rapid identification of UCA1 as a very sensitive and specific unique marker for human bladder carcinoma. Clin Cancer Res 2006; 12: 4851-4858.
-
(2006)
Clin Cancer Res
, vol.12
, pp. 4851-4858
-
-
Wang, X.S.1
Zhang, Z.2
Wang, H.C.3
Cai, J.L.4
Xu, Q.W.5
Li, M.Q.6
Chen, Y.C.7
Qian, X.P.8
Lu, T.J.9
Yu, L.Z.10
Zhang, Y.11
Xin, D.Q.12
Na, Y.Q.13
Chen, W.F.14
-
144
-
-
78349252731
-
Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA
-
Yao H, Brick K, Evrard Y, Xiao T, Camerini-Otero RD and Felsenfeld G. Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA. Genes Dev 2010; 24: 2543-2555.
-
(2010)
Genes Dev
, vol.24
, pp. 2543-2555
-
-
Yao, H.1
Brick, K.2
Evrard, Y.3
Xiao, T.4
Camerini-Otero, R.D.5
Felsenfeld, G.6
-
145
-
-
34249014622
-
Induction of drug resistance and transformation in human cancer cells by the noncoding RNA CUDR
-
Tsang WP, Wong TW, Cheung AH, Co CN and Kwok TT. Induction of drug resistance and transformation in human cancer cells by the noncoding RNA CUDR. Rna 2007; 13: 890-898.
-
(2007)
Rna
, vol.13
, pp. 890-898
-
-
Tsang, W.P.1
Wong, T.W.2
Cheung, A.H.3
Co, C.N.4
Kwok, T.T.5
-
146
-
-
69149090874
-
Role of human noncoding RNAs in the control of tumorigenesis
-
Li L, Feng T, Lian Y, Zhang G, Garen A and Song X. Role of human noncoding RNAs in the control of tumorigenesis. Proc Natl Acad Sci USA 2009; 106: 12956-12961.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 12956-12961
-
-
Li, L.1
Feng, T.2
Lian, Y.3
Zhang, G.4
Garen, A.5
Song, X.6
-
147
-
-
70349730032
-
Regulation of proto-oncogene transcription, cell proliferation, and tumorigenesis in mice by PSF protein and a VL30 noncoding RNA
-
Wang G, Cui Y, Zhang G, Garen A and Song X. Regulation of proto-oncogene transcription, cell proliferation, and tumorigenesis in mice by PSF protein and a VL30 noncoding RNA. Proc Natl Acad Sci USA 2009; 106: 16794-16798.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 16794-16798
-
-
Wang, G.1
Cui, Y.2
Zhang, G.3
Garen, A.4
Song, X.5
-
148
-
-
58349088314
-
A susceptibility locus for papillary thyroid carcinoma on chromosome 8q24
-
He H, Nagy R, Liyanarachchi S, Jiao H, Li W, Suster S, Kere J and de la Chapelle A. A susceptibility locus for papillary thyroid carcinoma on chromosome 8q24. Cancer Res 2009; 69: 625-631.
-
(2009)
Cancer Res
, vol.69
, pp. 625-631
-
-
He, H.1
Nagy, R.2
Liyanarachchi, S.3
Jiao, H.4
Li, W.5
Suster, S.6
Kere, J.7
de la Chapelle, A.8
-
149
-
-
78649467088
-
Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells
-
Loewer S, Cabili MN, Guttman M, Loh YH, Thomas K, Park IH, Garber M, Curran M, Onder T, Agarwal S, Manos PD, Datta S, Lander ES, Schlaeger TM, Daley GQ and Rinn JL. Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells. Nat Genet 2010; 42: 1113-1117.
-
(2010)
Nat Genet
, vol.42
, pp. 1113-1117
-
-
Loewer, S.1
Cabili, M.N.2
Guttman, M.3
Loh, Y.H.4
Thomas, K.5
Park, I.H.6
Garber, M.7
Curran, M.8
Onder, T.9
Agarwal, S.10
Manos, P.D.11
Datta, S.12
Lander, E.S.13
Schlaeger, T.M.14
Daley, G.Q.15
Rinn, J.L.16
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