Engineering cells for cell culture bioprocessing - Physiological fundamentals

Advances in Biochemical Engineering/Biotechnology

Volumn 101, Issue , 2006, Pages 119-164

  Seth, Gargi ^a   Hossler, Patrick ^a   Joon, Chong Yee ^a   Hu, Wei Shou ^a  

^a University of Minnesota   (United States)

Author keywords

Apoptosis; Cell cycle; Cell engineering; Cell physiology; Glycosylation; Mammalian cell culture; Metabolic engineering; Metabolism; Protein processing; Recombinant protein

Indexed keywords

MAMMALIA;

RECOMBINANT PROTEIN;

ANIMAL; APOPTOSIS; BIOREACTOR; BIOSYNTHESIS; BIOTECHNOLOGY; CELL CYCLE; CELL FUNCTION; CULTURE TECHNIQUE; ENERGY METABOLISM; METHODOLOGY; PHYSIOLOGY; REVIEW;

ANIMALS; APOPTOSIS; BIOREACTORS; BIOTECHNOLOGY; CELL CULTURE TECHNIQUES; CELL CYCLE; CELL PHYSIOLOGY; ENERGY METABOLISM; RECOMBINANT PROTEINS;

EID: 33749256407     PISSN: 07246145     EISSN: None     Source Type: Book Series    
DOI: 10.1007/10_017     Document Type: Review

References (195)

1. van Anken E, Romijn EP, Maggioni C, Mezghrani A, Sitia R, Braakman I, Heck AJ (2003) Immunity 18:243
2. Fleischaker RJJ, Sinskey A (1981) Eur J Appl Microbiol Biotechnol 12:193
3. Jeong DW, Kim TS, Lee JW, Kim KT et al. (2001) Biochem Biophys Res Commun 289:1141
4. Chen K, Liu Q, Xie L, Sharp PA, Wang DI (2001) Biotechnol Bioeng 72:55
5. Irani N, Wirth M, van den Heuvel J, Wagner R (1999) Biotechnol Bioeng 66:238
6. Fogolin MB, Wagner R, Etcheverrigaray M, Kratje R (2004) J Biotechnol 109:179
7. Elias CB, Carpentier E, Durocher Y, Bisson L, Wagner R, Kamen A (2003) Biotechnol Prog 19:90
8. Irani N, Beccaria AJ, Wagner R (2002) J Biotechnol 93:269
9. Zhou WC, Rehm J, Hu WS (1995) Biotechnol Bioeng 46:579
10. Paredes C, Prats E, Cairo JJ, Azorin F, Cornudella L, Godia F (1999) Cytotechnology 30:85
11. Noguchi Y, Saito A, Miyagi Y, Yamanaka S, Marat D, Doi C, Yoshikawa T, Tsuburaya A, Ito T, Satoh S (2000) Cancer Lett 154:175
12. Al-Khalili L, Cartee GD, Krook A (2003) Biochem Biophys Res Commun 307:127
13. Zhou W-C, Rehm J, Europa A, Hu W-S (1997) Cytotechnology 24:99
14. Zeng AP, Hu WS, Deckwer WD (1998) Biotechnol Prog 14:434
15. Bell SL, Bebbington C, Scott MF, Wardell JN, Spier RE, Bushell ME, Sanders PG (1995) Enzyme Microb Technol 17:98
16. Harris M (1984) Somat Cell Mol Genet 10:275
17. Hassell T, Butler M (1990) J Cell Sci 96(Pt 3):501
18. Rees WD, Hay SM (1995) Biochem J 309(Pt 3):999
19. Nelson DL, Cox MM (2000) Lehninger principles of biochemistry. Worth, p 390
20. Crawford JM (1996) Semin Liver Dis 16:169
21. Ktistakis NT, Brown HA, Waters MG, Sternweis PC, Roth MG (1996) J Cell Biol 134:295
22. Rosenthal MD (1987) Prog Lipid Res 26:87
23. Frohnert BI, Bernlohr DA (2000) Prog Lipid Res 39:83
24. Keen MJ, Steward TW (1995) Cytotechnology 17:203
25. Ohmori H (1988) J Immunol Methods 112:227
26. Eagle H (1959) Science 130:432
27. Morgan JF, Morton HJ, Parker RC (1950) Proc Soc Exp Biol Med 73:1
28. Ham RG (1963) Science 140:802
29. Harary I, Gerschenson LE, Haggerty DF Jr, Desmond W, Mead JF (1967) Wistar Inst Symp Monogr 6:17
30. Spector AA, Mathur SN, Kaduce TL, Hyman BT (1981) Prog Lipid Res 19:155
31. Bailey JM, Dunbar LM (1973) Exp Mol Pathol 18:142
32. Morisaki N, Sprecher H, Milo GE, Cornwell DG (1982) Lipids 17:893
33. Savonniere S, Zeghari N, Miccoli L, Muller S, Maugras M, Donner M (1996) J Biotechnol 48:161
34. Butler M, Huzel N (1995) J Biotechnol 39:165
35. Schmid G, Zilg H, Eberhard U, Johannsen R (1991) J Biotechnol 17:155
36. Baldassare JJ, Saito Y, Silbert DF (1979) J Biol Chem 254:1108
37. Butler M, Huzel N, Barnabe N, Gray T, Bajno L (1999) Cytotechnol 30:27
38. Kaduce TL, Awad AB, Fontenelle LJ, Spector AA (1977) J Biol Chem 252:6624
39. Burns CP, Luttenegger DG, Dudley DT, Buettner GR, Spector AA (1979) Cancer Res 39:1726
40. Yorek MA, Strom DK, Spector AA (1984) J Neurochem 42:254
41. Yorek MA, Hyman BT, Spector AA (1983) J Neurochem 40:70
42. Spector AA, Yorek MA (1985) J Lipid Res 26:1015
43. Murphy DJ (1999) Curr Opin Biotechnol 10:175
44. Schmid KM, Ohlrogge JB (2002) In: Vance DEVaJE (ed) Biochemistry of lipids, lipoproteins and membranes, 4th edn. Elsevier, Netherlands
45. Broun P, Gettner S, Somerville C (1999) Annu Rev Nutr 19:197
46. Knutzon DS, Hayes TR, Wyrick A, Xiong H, Maelor Davies H, Voelker TA (1999) Plant Physiol 120:739
47. Lardizabal KD, Metz JG, Sakamoto T, Hutton WC, Pollard MR, Lassner MW (2000) Plant Physiol 122:645
48. Zolfaghari R, Ross AC (2003) Prostagland Leukot Essent Fatty Acids 68:171
49. Domergue F, Abbadi A, Ott C, Zank TK, Zahringer U, Heinz E (2003) J Biol Chem 278:35115
50. Kelder B, Mukeji P, Kirchner S, Hovanec G, Leonard AE, Chuang LT, Kopchick JJ, Huang YS (2001) Mol Cell Biochem 219:7
51. Bach TJ, Benveniste P (1997) Prog Lipid Res 36:197
52. Kao FT, Puck T (1975) Genetics 79 Suppl, p 343
53. Leonard S, Sinensky M (1988) Biochim Biophys Acta 947:101
54. Chang TY, Kasan MT, Chin J, Chang CC, Spillane DM, Chen J (1997) Curr Opin Lipidol 8:65
55. Goldstein JL, Rawson RB, Brown MS (2002) Arch Biochem Biophys 397:139
56. Seth G, McIvor RS, Hu W-S (2006) J Biotechnol 121:241
57. Seth G, Ozturk M, Hu W-S (2005) Biotech Bioeng, Published Online: 27 Sep 2005, DOI: 10.1002/bit.20720
58. Gass JN, Gunn KE, Sriburi R, Brewer JW (2004) Trends Immunol 25:17
59. Ma Y, Hendershot LM (2003) Nat Immunol 4:310
60. Sriburi R, Jackowski S, Mori K, Brewer JW (2004) J Cell Biol 167:35
61. Dinnis DM, James DC (2005) Biotechnol Bioeng 91:180
62. Kaufman RJ (2004) Trends Biochem Sci 29:152
63. Lippincott-Schwartz J, Roberts TH, Hirschberg K (2000) Annu Rev Cell Dev Biol 16:557
64. Rabouille C, Hui N, Hunte F, Kieckbusch R, Berger EG, Warren G, Nilsson T (1995) J Cell Sci 108(Pt 4):1617
65. Yeo KT, Parent JB, Yeo TK, Olden K (1985) J Biol Chem 260:7896
66. Kaufman RJ (2002) J Clin Invest 110:1389
67. Shaffer AL, Lin KI, Kuo TC, Yu X, Hurt EM, Rosenwald A, Giltnane JM, Yang L, Zhao H, Calame K, Staudt LM (2002) Immunity 17:51
68. Lasunskaia EB, Fridlianskaia II, Darieva ZA, Da Silva MS, Kanashiro MM, Margulis BA (2003) Biotechnol Bioeng 81:496
69. Dorner AJ, Wasley LC, Kaufman RJ (1992) EMBO J 11:1563
70. Borth N, Mattanovich D, Kunert R, Katinger H (2005) Biotechnol Prog 21:106
71. Kitchin K, Flickinger MC (1995) Biotechnol Prog 11:565
72. Davis R, Schooley K, Rasmussen B, Thomas J, Reddy P (2000) Biotechnol Prog 16:736
73. Rehemtulla A, Roth DA, Wasley LC, Kuliopulos A, Walsh CT, Furie B, Furie BC, Kaufman RJ (1993) Proc Natl Acad Sci USA 90:4611
74. Carraway KL, Hull SR (1989) Bioessays 10:117
75. Varki A (1998) Trends Cell Biol 8:34
76. Sinclair AM, Elliott S (2005) J Pharm Sci 94:1626
77. Gross V, Heinrich PC, vom Berg D, Steube K, Andus T, Tran-Thi TA, Decker K, Gerok W (1988) Eur J Biochem 173:653
78. Runkel L, Meier W, Pepinsky RB, Karpusas M, Whitty A, Kimball K, Brickelmaier M, Muldowney C, Jones W, Goelz SE (1998) Pharm Res 15:641
79. Ashwell G, Kawasaki T (1978) Methods Enzymol 50:287
80. Ashwell G, Harford J (1982) Annu Rev Biochem 51:531
81. Hermeling S, Crommelin DJ, Schellekens H, Jiskoot W (2004) Pharm Res 21:897
82. Raju TS, Briggs JB, Borge SM, Jones AJ (2000) Glycobiology 10:477
83. Dzulynska J, Krajewska K, Starzynski W (1966) Bull Acad Pol Sci Biol 14:527
84. Sathyamoorthy N, Decker JM, Sherblom AP, Muchmore A (1991) Mol Cell Biochem 102:139
85. Cooper DK (1998) Xenotransplantation 5:6
86. Galili U (2001) Biochimie 83:557
87. Lund J, Tanaka T, Takahashi N, Sarmay G, Arata Y, Jefferis R (1990) Mol Immunol 27:1145
88. Bazin R, Darveau A, Martel F, Pelletier A, Piche L, St-Laurent M, Thibault L, Demers A, Boyer L, Lemieux G et al. (1992) J Immunol 149:3889
89. Tsuchiya N, Endo T, Matsuta K, Yoshinoya S, Aikawa T, Kosuge E, Takeuchi F, Miyamoto T, Kobata A (1989) J Rheumatol 16:285
90. Mattu TS, Pleass RJ, Willis AC, Kilian M, Wormald MR, Lellouch AC, Rudd PM, Woof JM, Dwek RA (1998) J Biol Chem 273:2260
91. Basset C, Devauchelle V, Durand V, Jamin C, Pennec YL, Youinou P, Dueymes M (1999) Scand J Immunol 50:572
92. Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A (1989) Proc Natl Acad Sci USA 86:7819
93. Gramer MJ, Goochee CF (1993) Biotechnol Prog 9:366
94. Ferrari J, Gunson J, Lofgren J, Krummen L, Warner TG (1998) Biotechnol Bioeng 60:589
95. Chenu S, Gregoire A, Malykh Y, Visvikis A, Monaco L, Shaw L, Schauer R, Marc A, Goergen JL (2003) Biochim Biophys Acta 1622:133
96. Lee EU, Roth J, Paulson JC (1989) J Biol Chem 264:13848
97. Zhang X, Lok SH, Kon OL (1998) Biochim Biophys Acta 1425:441
98. Schlenke P, Grabenhorst E, Nimtz M, Conradt HS (1999) Cytotechnology 30:17
99. Weikert S, Papac D, Briggs J, Cowfer D, Tom S, Gawlitzek M, Lofgren J, Mehta S, Chisholm V, Modi N, Eppler S, Carroll K, Chamow S, Peers D, Berman P, Krummen L (1999) Nat Biotechnol 17:1116
100. Perlman S, van den Hazel B, Christiansen J, Gram-Nielsen S, Jeppesen CB, Andersen KV, Halkier T, Okkels S, Schambye HT (2003) J Clin Endocrinol Metab 88:3227
101. Elliott S, Lorenzini T, Asher S, Aoki K, Brankow D, Buck L, Busse L, Chang D, Fuller J, Grant J, Hernday N, Hokum M, Hu S, Knudten A, Levin N, Komorowski R, Martin F, Navarro R, Osslund T, Rogers G, Rogers N, Trail G, Egrie J (2003) Nat Biotechnol 21:414
102. Elliott S, Lorenzini T, Strickland TW, Delorme E, Egrie JC (2000) Blood 96:82a
103. Bright RA, Ross TM, Subbarao K, Robinson HL, Katz JM (2003) Virology 308:270
104. Lifely MR, Hale C, Boyce S, Keen MJ, Phillips J (1995) Glycobiology 5:813
105. Campbell C, Stanley P (1984) J Biol Chem 259:13370
106. Sburlati AR, Umana P, Prati EG, Bailey JE (1998) Biotechnol Prog 14:189
107. Umana P, Jean-Mairet J, Moudry R, Amstutz H, Bailey JE (1999) Nat Biotechnol 17:176
108. Davies J, Jiang L, Pan LZ, LaBarre MJ, Anderson D, Reff M (2001) Biotechnol Bioeng 74:288
109. Shields RL, Lai J, Keck R, O'Connell LY, Hong K, Meng YG, Weikert SH, Presta LG (2002) J Biol Chem 277:26733
110. Shinkawa T, Nakamura K, Yamane N, Shoji-Hosaka E, Kanda Y, Sakurada M, Uchida K, Anazawa H, Satoh M, Yamasaki M, Hanai N, Shitara K (2003) J Biol Chem 278:3466
111. Yamane-Ohnuki N, Kinoshita S, Inoue-Urakubo M, Kusunoki M, Iida S, Nakano R, Wakitani M, Niwa R, Sakurada M, Uchida K, Shitara K, Satoh M (2004) Biotechnol Bioeng 87:614
112. Mori K, Kuni-Kamochi R, Yamane-Ohnuki N, Wakitani M, Yamano K, Imai H, Kanda Y, Niwa R, Iida S, Uchida K, Shitara K, Satoh M (2004) Biotechnol Bioeng 88:901
113. Ishida N, Kawakita M (2004) Pflugers Arch 447:768
114. Wong NSC, Yap M, Wang DIC (2006) Biotech Bioeng 93:1005
115. Hyuga M, Hyuga S, Kawasaki N, Ohta M, Itoh S, Niimi S, Kawanishi T, Hayakawa T (2004) Biol Pharm Bull 27:781
116. Dawson G, Moskal JR, Dawson SA (2004) J Neurochem 89:1436
117. Hammache D, Pieroni G, Yahi N, Delezay O, Koch N, Lafont H, Tamalet C, Fantini J (1998) J Biol Chem 273:7967
118. Grabenhorst E, Schlenke P, Pohl S, Nimtz M, Conradt HS (1999) Glycoconj J 16:81
119. Sangfelt O, Erickson S, Grander D (2000) Front Biosci 5:D479
120. Hanahan D, Weinberg RA (2000) Cell 100:57
121. Malumbres M, Barbacid M (2001) Nat Rev Cancer 1:222
122. Trimarchi JM, Lees JA (2002) Nat Rev Mol Cell Biol 3:11
123. DeGregori J (2002) Biochim Biophys Acta 1602:131
124. Danen EH, Yamada KM (2001) J Cell Physiol 189:1
125. Price LS, Leng J, Schwartz MA, Bokoch GM (1998) Mol Biol Cell 9:1863
126. Page K, Li J, Corbit KC, Rumilla KM, Soh JW, Weinstein IB, Albanese C, Pestell RG, Rosner MR, Hershenson MB (2002) Am J Respir Cell Mol Biol 27:204
127. Deshpande A, Sicinski P, Hinds PW (2005) Oncogene 24:2909
128. Minella AC, Swanger J, Bryant E, Welcker M, Hwang H, Clurman BE (2002) Curr Biol 12:1817
129. Spruck CH, Won KA, Reed SI (1999) Nature 401:297
130. Kawamura K, Izumi H, Ma Z, Ikeda R, Moriyama M, Tanaka T, Nojima T, Levin LS, Fujikawa-Yamamoto K, Suzuki K, Fukasawa K (2004) Cancer Res 64:4800
131. Polyak K, Lee MH, Erdjument-Bromage H, Koff A, Roberts JM, Tempst P, Massague J (1994) Cell 78:59
132. Xiong Y, Hannon GJ, Zhang H, Casso D, Kobayashi R, Beach D (1993) Nature 366:701
133. Miller WM, Wilke CR, Blanch HW (1988) Biotechnol Bioeng 32:947
134. Suzuki E, Ollis DF (1990) Biotechnol Prog 6:231
135. Johnson DG, Schwarz JK, Cress WD, Nevins JR (1993) Nature 365:349
136. Robinson DK, Memmert KW (1991) Biotech Bioeng 38:972
137. Connell-Crowley L, Elledge SJ, Harper JW (1998) Curr Biol 8:65
138. Ohtsubo M, Roberts JM (1993) Science 259:1908
139. Renner WA, Lee KH, Hatzimanikatis V, Bailey JE, Eppenberger HM (1995) Biotechnol Bioeng 47:476
140. Fang F, Orend G, Watanabe N, Hunter T, Ruoslahti E (1996) Science 271:499
141. Xu G, Livingston DM, Krek W (1995) Proc Natl Acad Sci USA 92:1357
142. Lee KH, Harrington MG, Bailey JE (1996) Biotechnol Bioeng 50:336
143. Ren B, Cam H, Takahashi Y, Volkert T, Terragni J, Young RA, Dynlacht BD (2002) Genes Dev 16:245
144. Zhu X, Ohtsubo M, Bohmer RM, Roberts JM, Assoian RK (1996) J Cell Biol 133:391
145. Morgan DO (1995) Nature 374:131
146. Fussenegger M, Schlatter S, Datwyler D, Mazur X, Bailey JE (1998) Nat Biotechnol 16:468
147. Mazur X, Fussenegger M, Renner WA, Bailey JE (1998) Biotechnol Prog 14:705
148. Baim SB, Labow MA, Levine AJ, Shenk T (1991) Proc Natl Acad Sci USA 88:5072
149. Watanabe S, Shuttleworth J, Al-Rubeai M (2002) Biotechnol Bioeng 77:1
150. Matushansky I, Radparvar F, Skoultchi AI (2000) Blood 96:2755
151. Liu M, Lee MH, Cohen M, Bommakanti M, Freedman LP (1996) Genes Dev 10:142
152. Sekiguchi T, Hunter T (1998) Oncogene 16:369
153. Conzen SD, Gottlob K, Kandel ES, Khanduri P, Wagner AJ, O'Leary M, Hay N (2000) Mol Cell Biol 20:6008
154. Claassen GF, Hann SR (1999) Oncogene 18:2925
155. Juin P, Hueber AO, Littlewood T, Evan G (1999) Genes Dev 13:1367
156. Ifandi V, Al-Rubeai M (2005) Biotechnol Prog 21:671
157. Fussenegger M, Betenbaugh MJ (2002) Biotechnol Bioeng 79:509
158. Gilot D, Serandour AL, Ilyin GP, Lagadic-Gossmann D, Loyer P, Corlu A, Coutant A, Baffet G, Peter ME, Fardel O, Guguen-Guillouzo C (2005) Carcinogenesis 26:2086
159. Tschopp J, Irmler M, Thome M (1998) Curr Opin Immunol 10:552
160. Kataoka T, Budd RC, Holler N, Thome M, Martinon F, Irmler M, Burns K, Hahne M, Kennedy N, Kovacsovics M, Tschopp J (2000) Curr Biol 10:640
161. Ashkenazi A, Dixit VM (1998) Science 281:1305
162. Krammer PH (2000) Nature 407:789
163. Yuan J, Yankner BA (2000) Nature 407:802
164. Shimizu S, Narita M, Tsujimoto Y (1999) Nature 399:483
165. Harris MH, Thompson CB (2000) Cell Death Differ 7:1182
166. Tey BT, Singh RP, Piredda L, Piacentini M, Al-Rubeai M (2000) J Biotechnol 79:147
167. Mastrangelo AJ, Hardwick JM, Bex F, Betenbaugh MJ (2000) Biotechnol Bioeng 67:544
168. Tey BT, Singh RP, Piredda L, Piacentini M, Al-Rubeai M (2000) Biotechnol Bioeng 68:31
169. Meents H, Enenkel B, Eppenberger HM, Werner RG, Fussenegger M (2002) Biotechnol Bioeng 80:706
170. Mastrangelo AJ, Hardwick JM, Zou S, Betenbaugh MJ (2000) Biotechnol Bioeng 67:555
171. Simpson NH, Singh RP, Perani A, Goldenzon C, Al-Rubeai M (1998) Biotechnol Bioeng 59:90
172. Simpson NH, Singh RP, Emery AN, Al-Rubeai M (1999) Biotechnol Bioeng 64:174
173. Jung D, Cote S, Drouin M, Simard C, Lemieux R (2002) Biotechnol Bioeng 79:180
174. Borner C (1996) J Biol Chem 271:12695
175. Minn AJ, Boise LH, Thompson CB (1996) Genes Dev 10:2621
176. Chang BS, Minn AJ, Muchmore SW, Fesik SW, Thompson CB (1997) EMBO J 16:968
177. Figueroa B Jr, Sauerwald TM, Oyler GA, Hardwick JM, Betenbaugh MJ (2003) Metab Eng 5:230
178. Figueroa B Jr, Sauerwald TM, Mastrangelo AJ, Hardwick JM, Betenbaugh MJ (2001) Biotechnol Bioeng 73:211
179. Charbonneau J, Gautheir E (2001) Cytotechnology 27:41
180. Chau BN, Cheng EH, Kerr DA, Hardwick JM (2000) Mol Cell 6:31
181. Figueroa B Jr, Chen S, Oyler GA, Hardwick JM, Betenbaugh MJ (2004) Biotechnol Bioeng 85:589
182. Boya P, Roumier T, Andreau K, Gonzalez-Polo RA, Zamzami N, Castedo M, Kroemer G (2003) Biochem Biophys Res Commun 304:575
183. Han J, Sabbatini P, Perez D, Rao L, Modha D, White E (1996) Genes Dev 10:461
184. Huang DC, Cory S, Strasser A (1997) Oncogene 14:405
185. Rao L, Modha D, White E (1997) Oncogene 15:1587
186. Mercille S, Massie B (1999) Biotechnol Bioeng 63:529
187. Kim NS, Lee GM (2002) Biotechnol Bioeng 78:217
188. Lai D, Fu L, Weng S, Qi L, Yu C, Yu T, Wang H, Chen W (2004) Biotechnol Bioeng 85:20
189. McKenna SL, Cotter TG (2000) Biotechnol Bioeng 67:165
190. Tinto A, Gabernet C, Vives J, Prats E, Cairo JJ, Cornudella L, Godia F (2002) J Biotechnol 95:205
191. Huang H, Joazeiro CA, Bonfoco E, Kamada S, Leverson JD, Hunter T (2000) J Biol Chem 275:26661
192. Suzuki Y, Nakabayashi Y, Takahashi R (2001) Proc Natl Acad Sci USA 98:8662
193. Sauerwald TM, Betenbaugh MJ, Oyler GA (2002) Biotechnol Bioeng 77:704
194. Woo M, Hakem R, Soengas MS, Duncan GS, Shahinian A, Kagi D, Hakem A, McCurrach M, Khoo W, Kaufman SA, Senaldi G, Howard T, Lowe SW, Mak TW (1998) Genes Dev 12:806
195. Janicke RU, Sprengart ML, Wati MR, Porter AG (1998) J Biol Chem 273:9357