-
2
-
-
0035222980
-
Walther Flemming: pioneer of mitosis research
-
Paweletz N (2001) Walther Flemming: pioneer of mitosis research. Nat. Rev. Mol. Cell Biol. 2: 72-75.
-
(2001)
Nat. Rev. Mol. Cell Biol.
, vol.2
, pp. 72-75
-
-
Paweletz, N.1
-
4
-
-
0016687530
-
Electron microscopic and biochemical evidence that chromatin structure is a repeating unit
-
Oudet P, Gross-Bellard M, Chambon P (1975) Electron microscopic and biochemical evidence that chromatin structure is a repeating unit. Cell 4: 281-300.
-
(1975)
Cell
, vol.4
, pp. 281-300
-
-
Oudet, P.1
Gross-Bellard, M.2
Chambon, P.3
-
5
-
-
0021760689
-
Structure of the nucleosome core particle at 7 A resolution
-
Richmond TJ, Finch JT, Rushton B, Rhodes D, Klug A (1984) Structure of the nucleosome core particle at 7 A resolution. Nature 311: 532-537.
-
(1984)
Nature
, vol.311
, pp. 532-537
-
-
Richmond, T.J.1
Finch, J.T.2
Rushton, B.3
Rhodes, D.4
Klug, A.5
-
6
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2 8 A resolution
-
Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ (1997) Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 389: 251-260.
-
(1997)
Nature
, vol.389
, pp. 251-260
-
-
Luger, K.1
Mader, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
7
-
-
0027525056
-
Decoding the nucleosome
-
Turner BM (1993) Decoding the nucleosome. Cell 75: 5-8.
-
(1993)
Cell
, vol.75
, pp. 5-8
-
-
Turner, B.M.1
-
8
-
-
0035839136
-
Translating the histone code
-
Jenuwein T, Allis CD (2001) Translating the histone code. Science 293: 1074-1080.
-
(2001)
Science
, vol.293
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
10
-
-
79953163378
-
Chromatin higher-order structures and gene regulation
-
Li G, Reinberg D (2011) Chromatin higher-order structures and gene regulation. Curr. Opin. Genet. Dev. 21: 175-186.
-
(2011)
Curr. Opin. Genet. Dev.
, vol.21
, pp. 175-186
-
-
Li, G.1
Reinberg, D.2
-
11
-
-
58149401194
-
Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ
-
Eltsov M, Maclellan KM, Maeshima K, Frangakis AS, Dubochet J (2008) Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ. Proc. Natl. Acad. Sci. USA 105: 19732-19737.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 19732-19737
-
-
Eltsov, M.1
Maclellan, K.M.2
Maeshima, K.3
Frangakis, A.S.4
Dubochet, J.5
-
12
-
-
77954819238
-
Chromatin structure: does the 30-nm fibre exist in vivo? Curr
-
Maeshima K, Hihara S, Eltsov M (2010) Chromatin structure: does the 30-nm fibre exist in vivo? Curr. Opin. Cell Biol. 22: 291-297.
-
(2010)
Opin. Cell Biol.
, vol.22
, pp. 291-297
-
-
Maeshima, K.1
Hihara, S.2
Eltsov, M.3
-
13
-
-
60349109666
-
Electron spectroscopic imaging of the nuclear landscape
-
Ahmed K, Li R, Bazett-Jones DP (2009) Electron spectroscopic imaging of the nuclear landscape. Methods Mol. Biol. 464: 415-423.
-
(2009)
Methods Mol. Biol.
, vol.464
, pp. 415-423
-
-
Ahmed, K.1
Li, R.2
Bazett-Jones, D.P.3
-
14
-
-
77956272401
-
Global chromatin architecture reflects pluripotency and lineage commitment in the early mouse embryo
-
Ahmed K, Dehghani H, Rugg-Gunn P, Fussner E, Rossant J, et al. (2010) Global chromatin architecture reflects pluripotency and lineage commitment in the early mouse embryo. PLoS One 5: e10531.
-
(2010)
PLoS One
, vol.5
-
-
Ahmed, K.1
Dehghani, H.2
Rugg-Gunn, P.3
Fussner, E.4
Rossant, J.5
-
15
-
-
58049192401
-
Mapping in vivo chromatin interactions in yeast suggests an extended chromatin fiber with regional variation in compaction
-
Dekker J (2008) Mapping in vivo chromatin interactions in yeast suggests an extended chromatin fiber with regional variation in compaction. J. Biol. Chem. 283: 34532-34540.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 34532-34540
-
-
Dekker, J.1
-
16
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, et al. (2009) Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326: 289-293.
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
van Berkum, N.L.2
Williams, L.3
Imakaev, M.4
Ragoczy, T.5
-
18
-
-
68349125112
-
What controls nucleosome positions?
-
Segal E, Widom J (2009) What controls nucleosome positions? Trends Genet. 25: 335-343.
-
(2009)
Trends Genet
, vol.25
, pp. 335-343
-
-
Segal, E.1
Widom, J.2
-
19
-
-
76949093375
-
Nucleosome positioning: how is it established, and why does it matter? Dev
-
Radman-Livaja M, Rando OJ (2010) Nucleosome positioning: how is it established, and why does it matter? Dev. Biol. 339: 258-266.
-
(2010)
Biol
, vol.339
, pp. 258-266
-
-
Radman-Livaja, M.1
Rando, O.J.2
-
20
-
-
78651477233
-
High-resolution genome-wide mapping of the primary structure of chromatin
-
Zhang Z, Pugh BF (2011) High-resolution genome-wide mapping of the primary structure of chromatin. Cell 144: 175-186.
-
(2011)
Cell
, vol.144
, pp. 175-186
-
-
Zhang, Z.1
Pugh, B.F.2
-
21
-
-
60349089645
-
Nucleosome positioning and gene regulation: advances through genomics
-
Jiang C, Pugh BF (2009) Nucleosome positioning and gene regulation: advances through genomics. Nat. Rev. Genet. 10: 161-172.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 161-172
-
-
Jiang, C.1
Pugh, B.F.2
-
22
-
-
78650961149
-
Epigenetics in alternative pre-mRNA splicing
-
Luco RF, Allo M, Schor IE, Kornblihtt AR, Misteli T (2011) Epigenetics in alternative pre-mRNA splicing. Cell 144: 16-26.
-
(2011)
Cell
, vol.144
, pp. 16-26
-
-
Luco, R.F.1
Allo, M.2
Schor, I.E.3
Kornblihtt, A.R.4
Misteli, T.5
-
23
-
-
0003903126
-
-
New York: Springer-Verlag
-
Van Holde KE (1988) Chromatin. New York: Springer-Verlag.
-
(1988)
Chromatin
-
-
Van Holde, K.E.1
-
25
-
-
79955950854
-
Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter
-
Bai L, Ondracka A, Cross FR (2011) Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter. Mol. Cell 42: 465-476.
-
(2011)
Mol. Cell
, vol.42
, pp. 465-476
-
-
Bai, L.1
Ondracka, A.2
Cross, F.R.3
-
26
-
-
79959557189
-
Determinants of nucleosome organization in primary human cells
-
Valouev A, Johnson SM, Boyd SD, Smith CL, Fire AZ, et al. (2011) Determinants of nucleosome organization in primary human cells. Nature 474: 516-520.
-
(2011)
Nature
, vol.474
, pp. 516-520
-
-
Valouev, A.1
Johnson, S.M.2
Boyd, S.D.3
Smith, C.L.4
Fire, A.Z.5
-
27
-
-
79956316470
-
A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome
-
Zhang Z, Wippo CJ, Wal M, Ward E, Korber P, et al. (2011) A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome. Science 332: 977-980.
-
(2011)
Science
, vol.332
, pp. 977-980
-
-
Zhang, Z.1
Wippo, C.J.2
Wal, M.3
Ward, E.4
Korber, P.5
-
28
-
-
67650725820
-
The biology of chromatin remodeling complexes
-
Clapier CR, Cairns BR (2009) The biology of chromatin remodeling complexes. Annu. Rev. Biochem. 78: 273-304.
-
(2009)
Annu. Rev. Biochem.
, vol.78
, pp. 273-304
-
-
Clapier, C.R.1
Cairns, B.R.2
-
29
-
-
79952539053
-
ATP-dependent chromatin remodeling: genetics, genomics and mechanisms
-
Hargreaves DC, Crabtree GR (2011) ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Cell Res. 21: 396-420.
-
(2011)
Cell Res
, vol.21
, pp. 396-420
-
-
Hargreaves, D.C.1
Crabtree, G.R.2
-
30
-
-
65249173999
-
An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network
-
Ho L, Jothi R, Ronan JL, Cui K, Zhao K, et al. (2009) An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network. Proc. Natl. Acad. Sci. USA 106: 5187-5191.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 5187-5191
-
-
Ho, L.1
Jothi, R.2
Ronan, J.L.3
Cui, K.4
Zhao, K.5
-
31
-
-
9144269660
-
A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1
-
Krogan NJ, Keogh MC, Datta N, Sawa C, Ryan OW, et al. (2003) A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1. Mol. Cell 12: 1565-1576.
-
(2003)
Mol. Cell
, vol.12
, pp. 1565-1576
-
-
Krogan, N.J.1
Keogh, M.C.2
Datta, N.3
Sawa, C.4
Ryan, O.W.5
-
32
-
-
19344372948
-
A protein complex containing the conserved Swi2/Snf2-related ATPase Swr1p deposits histone variant H2A Z into euchromatin
-
Kobor MS, Venkatasubrahmanyam S, Meneghini MD, Gin JW, Jennings JL, et al. (2004) A protein complex containing the conserved Swi2/Snf2-related ATPase Swr1p deposits histone variant H2A.Z into euchromatin. PLoS Biol. 2: E131.
-
(2004)
PLoS Biol
, vol.2
-
-
Kobor, M.S.1
Venkatasubrahmanyam, S.2
Meneghini, M.D.3
Gin, J.W.4
Jennings, J.L.5
-
33
-
-
0348184963
-
ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex
-
Mizuguchi G, Shen X, Landry J, Wu WH, Sen S, et al. (2004) ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 303: 343-348.
-
(2004)
Science
, vol.303
, pp. 343-348
-
-
Mizuguchi, G.1
Shen, X.2
Landry, J.3
Wu, W.H.4
Sen, S.5
-
34
-
-
37249077649
-
Chromatin remodelling at promoters suppresses antisense transcription
-
Whitehouse I, Rando OJ, Delrow J, Tsukiyama T (2007) Chromatin remodelling at promoters suppresses antisense transcription. Nature 450: 1031-1035.
-
(2007)
Nature
, vol.450
, pp. 1031-1035
-
-
Whitehouse, I.1
Rando, O.J.2
Delrow, J.3
Tsukiyama, T.4
-
35
-
-
0041429637
-
Sequential roles of Brg, the ATPase subunit of BAF chromatin remodeling complexes, in thymocyte development
-
Chi TH, Wan M, Lee PP, Akashi K, Metzger D, et al. (2003) Sequential roles of Brg, the ATPase subunit of BAF chromatin remodeling complexes, in thymocyte development. Immunity 19: 169-182.
-
(2003)
Immunity
, vol.19
, pp. 169-182
-
-
Chi, T.H.1
Wan, M.2
Lee, P.P.3
Akashi, K.4
Metzger, D.5
-
36
-
-
75749101495
-
Chromatin remodelling during development
-
Ho L, Crabtree GR (2010) Chromatin remodelling during development. Nature 463: 474-484.
-
(2010)
Nature
, vol.463
, pp. 474-484
-
-
Ho, L.1
Crabtree, G.R.2
-
37
-
-
80052656113
-
Targeting chromatin remodelers: signals and search mechanisms
-
Erdel F, Krug J, Langst G, Rippe K (2011) Targeting chromatin remodelers: signals and search mechanisms. Biochim. Biophys. Acta 1809: 497-508.
-
(2011)
Biochim. Biophys. Acta
, vol.1809
, pp. 497-508
-
-
Erdel, F.1
Krug, J.2
Langst, G.3
Rippe, K.4
-
38
-
-
35848961668
-
How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers
-
Taverna SD, Li H, Ruthenburg AJ, Allis CD, Patel DJ (2007) How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers. Nat. Struct. Mol. Biol. 14: 1025-1040.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 1025-1040
-
-
Taverna, S.D.1
Li, H.2
Ruthenburg, A.J.3
Allis, C.D.4
Patel, D.J.5
-
41
-
-
79957537645
-
Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions
-
Ruthenburg AJ, Li H, Milne TA, Dewell S, McGinty RK, et al. (2011) Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions. Cell 145: 692-706.
-
(2011)
Cell
, vol.145
, pp. 692-706
-
-
Ruthenburg, A.J.1
Li, H.2
Milne, T.A.3
Dewell, S.4
McGinty, R.K.5
-
42
-
-
70349669271
-
Cooperative binding of two acetylation marks on a histone tail by a single bromodomain
-
Moriniere J, Rousseaux S, Steuerwald U, Soler-Lopez M, Curtet S, et al. (2009) Cooperative binding of two acetylation marks on a histone tail by a single bromodomain. Nature 461: 664-668.
-
(2009)
Nature
, vol.461
, pp. 664-668
-
-
Moriniere, J.1
Rousseaux, S.2
Steuerwald, U.3
Soler-Lopez, M.4
Curtet, S.5
-
43
-
-
51149107006
-
Regulation of muscle development by DPF3, a novel histone acetylation and methylation reader of the BAF chromatin remodeling complex
-
Lange M, Kaynak B, Forster UB, Tonjes M, Fischer JJ, et al. (2008) Regulation of muscle development by DPF3, a novel histone acetylation and methylation reader of the BAF chromatin remodeling complex. Genes Dev. 22: 2370-2384.
-
(2008)
Genes Dev
, vol.22
, pp. 2370-2384
-
-
Lange, M.1
Kaynak, B.2
Forster, U.B.3
Tonjes, M.4
Fischer, J.J.5
-
44
-
-
77954487796
-
Mechanism and regulation of acetylated histone binding by the tandem PHD finger of DPF3b
-
Zeng L, Zhang Q, Li S, Plotnikov AN, Walsh MJ, et al. (2010) Mechanism and regulation of acetylated histone binding by the tandem PHD finger of DPF3b. Nature 466: 258-262.
-
(2010)
Nature
, vol.466
, pp. 258-262
-
-
Zeng, L.1
Zhang, Q.2
Li, S.3
Plotnikov, A.N.4
Walsh, M.J.5
-
47
-
-
77956184148
-
The histone shuffle: histone chaperones in an energetic dance
-
Das C, Tyler JK, Churchill ME (2010) The histone shuffle: histone chaperones in an energetic dance. Trends Biochem. Sci. 35: 476-489.
-
(2010)
Trends Biochem. Sci.
, vol.35
, pp. 476-489
-
-
Das, C.1
Tyler, J.K.2
Churchill, M.E.3
-
48
-
-
82955247875
-
The chaperone-histone partnership: for the greater good of histone traffic and chromatin plasticity
-
Hondele M, Ladurner AG (2011) The chaperone-histone partnership: for the greater good of histone traffic and chromatin plasticity. Curr. Opin. Struct. Biol. 21: 698-708.
-
(2011)
Curr. Opin. Struct. Biol.
, vol.21
, pp. 698-708
-
-
Hondele, M.1
Ladurner, A.G.2
-
49
-
-
84856241069
-
Histone chaperone Asf1 plays an essential role in maintaining genomic stability in fission yeast
-
Tanae K, Horiuchi T, Matsuo Y, Katayama S, Kawamukai M (2012) Histone chaperone Asf1 plays an essential role in maintaining genomic stability in fission yeast. PLoS One 7: e30472.
-
(2012)
PLoS One
, vol.7
-
-
Tanae, K.1
Horiuchi, T.2
Matsuo, Y.3
Katayama, S.4
Kawamukai, M.5
-
50
-
-
83755183344
-
Promoter regulation by distinct mechanisms of functional interplay between lysine acetylase Rtt109 and histone chaperone Asf1
-
Lin LJ, Schultz MC (2011) Promoter regulation by distinct mechanisms of functional interplay between lysine acetylase Rtt109 and histone chaperone Asf1. Proc. Natl. Acad. Sci. USA 108: 19599-19604.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 19599-19604
-
-
Lin, L.J.1
Schultz, M.C.2
-
51
-
-
84857119549
-
The role of FACT in making and breaking nucleosomes
-
Formosa T (2012) The role of FACT in making and breaking nucleosomes. Biochim. Biophys. Acta 1819: 247-255.
-
(2012)
Biochim. Biophys. Acta
, vol.1819
, pp. 247-255
-
-
Formosa, T.1
-
52
-
-
79955844395
-
The histone chaperone FACT: structural insights and mechanisms for nucleosome reorganization
-
Winkler DD, Luger K (2011) The histone chaperone FACT: structural insights and mechanisms for nucleosome reorganization. J. Biol. Chem. 286: 18369-18374.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 18369-18374
-
-
Winkler, D.D.1
Luger, K.2
-
53
-
-
79951969175
-
Histone chaperones: modulators of chromatin marks
-
Avvakumov N, Nourani A, Cote J (2011) Histone chaperones: modulators of chromatin marks. Mol. Cell 41: 502-514.
-
(2011)
Mol. Cell
, vol.41
, pp. 502-514
-
-
Avvakumov, N.1
Nourani, A.2
Cote, J.3
-
54
-
-
77949874234
-
Histone variants--ancient wrap artists of the epigenome
-
Talbert PB, Henikoff S (2010) Histone variants--ancient wrap artists of the epigenome. Nat. Rev. Mol. Cell Biol. 11: 264-275.
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 264-275
-
-
Talbert, P.B.1
Henikoff, S.2
-
56
-
-
77649099092
-
Distinct factors control histone variant H3 3 localization at specific genomic regions
-
Goldberg AD, Banaszynski LA, Noh KM, Lewis PW, Elsaesser SJ, et al. (2010) Distinct factors control histone variant H3.3 localization at specific genomic regions. Cell 140: 678-691.
-
(2010)
Cell
, vol.140
, pp. 678-691
-
-
Goldberg, A.D.1
Banaszynski, L.A.2
Noh, K.M.3
Lewis, P.W.4
Elsaesser, S.J.5
-
58
-
-
65249154288
-
Connection between histone H2A variants and chromatin remodeling complexes
-
Altaf M, Auger A, Covic M, Cote J (2009) Connection between histone H2A variants and chromatin remodeling complexes. Biochem. Cell Biol. 87: 35-50.
-
(2009)
Biochem. Cell Biol.
, vol.87
, pp. 35-50
-
-
Altaf, M.1
Auger, A.2
Covic, M.3
Cote, J.4
-
59
-
-
84862192512
-
-
Database (Oxford) 2011 bar048
-
Marino-Ramirez L, Levine KM, Morales M, Zhang S, Moreland RT, et al. (2011) The Histone Database: an integrated resource for histones and histone fold-containing proteins. Database (Oxford) 2011: bar048.
-
(2011)
The Histone Database: an integrated resource for histones and histone fold-containing proteins
-
-
Marino-Ramirez, L.1
Levine, K.M.2
Morales, M.3
Zhang, S.4
Moreland, R.T.5
-
60
-
-
78651162036
-
Acetylation and Methylation of Histones and Their Possible Role in the Regulation of Rna Synthesis
-
Allfrey VG, Faulkner R, Mirsky AE (1964) Acetylation and Methylation of Histones and Their Possible Role in the Regulation of Rna Synthesis. Proc. Natl. Acad. Sci. USA 51: 786-794.
-
(1964)
Proc. Natl. Acad. Sci. USA
, vol.51
, pp. 786-794
-
-
Allfrey, V.G.1
Faulkner, R.2
Mirsky, A.E.3
-
61
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides T (2007) Chromatin modifications and their function. Cell 128: 693-705.
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
62
-
-
67650409769
-
Screen for DNA-damage-responsive histone modifications identifies H3K9Ac and H3K56Ac in human cells
-
Tjeertes JV, Miller KM, Jackson SP (2009) Screen for DNA-damage-responsive histone modifications identifies H3K9Ac and H3K56Ac in human cells. EMBO J. 28: 1878-1889.
-
(2009)
EMBO J
, vol.28
, pp. 1878-1889
-
-
Tjeertes, J.V.1
Miller, K.M.2
Jackson, S.P.3
-
63
-
-
70349975711
-
JAK2 phosphorylates histone H3Y41 and excludes HP1alpha from chromatin
-
Dawson MA, Bannister AJ, Gottgens B, Foster SD, Bartke T, et al. (2009) JAK2 phosphorylates histone H3Y41 and excludes HP1alpha from chromatin. Nature 461: 819-822.
-
(2009)
Nature
, vol.461
, pp. 819-822
-
-
Dawson, M.A.1
Bannister, A.J.2
Gottgens, B.3
Foster, S.D.4
Bartke, T.5
-
64
-
-
0032560517
-
Phosphorylation of histone H3 at serine 10 is correlated with chromosome condensation during mitosis and meiosis in Tetrahymena
-
Wei Y, Mizzen CA, Cook RG, Gorovsky MA, Allis CD (1998) Phosphorylation of histone H3 at serine 10 is correlated with chromosome condensation during mitosis and meiosis in Tetrahymena. Proc. Natl. Acad. Sci. USA 95: 7480-7484.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 7480-7484
-
-
Wei, Y.1
Mizzen, C.A.2
Cook, R.G.3
Gorovsky, M.A.4
Allis, C.D.5
-
65
-
-
77958481159
-
Nucleosome-interacting proteins regulated by DNA and histone methylation
-
Bartke T, Vermeulen M, Xhemalce B, Robson SC, Mann M, et al. (2010) Nucleosome-interacting proteins regulated by DNA and histone methylation. Cell 143: 470-484.
-
(2010)
Cell
, vol.143
, pp. 470-484
-
-
Bartke, T.1
Vermeulen, M.2
Xhemalce, B.3
Robson, S.C.4
Mann, M.5
-
66
-
-
0032965152
-
Esa1p is an essential histone acetyltransferase required for cell cycle progression
-
Clarke AS, Lowell JE, Jacobson SJ, Pillus L (1999) Esa1p is an essential histone acetyltransferase required for cell cycle progression. Mol. Cell Biol. 19: 2515-2526.
-
(1999)
Mol. Cell Biol.
, vol.19
, pp. 2515-2526
-
-
Clarke, A.S.1
Lowell, J.E.2
Jacobson, S.J.3
Pillus, L.4
-
67
-
-
84862156464
-
HIstome--a relational knowledgebase of human histone proteins and histone modifying enzymes
-
Khare SP, Habib F, Sharma R, Gadewal N, Gupta S, et al. (2012) HIstome--a relational knowledgebase of human histone proteins and histone modifying enzymes. Nucleic Acids Res. 40: D337-342.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Khare, S.P.1
Habib, F.2
Sharma, R.3
Gadewal, N.4
Gupta, S.5
-
68
-
-
6044256118
-
Histones and histone modifications
-
Peterson CL, Laniel MA (2004) Histones and histone modifications. Curr. Biol. 14: R546-551.
-
(2004)
Curr. Biol.
, vol.14
-
-
Peterson, C.L.1
Laniel, M.A.2
-
69
-
-
80052942443
-
Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification
-
Tan M, Luo H, Lee S, Jin F, Yang JS, et al. (2011) Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification. Cell 146: 1016-1028.
-
(2011)
Cell
, vol.146
, pp. 1016-1028
-
-
Tan, M.1
Luo, H.2
Lee, S.3
Jin, F.4
Yang, J.S.5
-
70
-
-
2542440487
-
Phosphorylation of histone H2A inhibits transcription on chromatin templates
-
Zhang Y, Griffin K, Mondal N, Parvin JD (2004) Phosphorylation of histone H2A inhibits transcription on chromatin templates. J. Biol. Chem. 279: 21866-21872.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 21866-21872
-
-
Zhang, Y.1
Griffin, K.2
Mondal, N.3
Parvin, J.D.4
-
71
-
-
80052172007
-
Histone ADP-ribosylation in DNA repair, replication and transcription
-
Messner S, Hottiger MO (2011) Histone ADP-ribosylation in DNA repair, replication and transcription. Trends Cell Biol. 21: 534-542.
-
(2011)
Trends Cell Biol
, vol.21
, pp. 534-542
-
-
Messner, S.1
Hottiger, M.O.2
-
72
-
-
33846488609
-
Mass spectrometric mapping of linker histone H1 variants reveals multiple acetylations, methylations, and phosphorylation as well as differences between cell culture and tissue
-
Wisniewski JR, Zougman A, Kruger S, Mann M (2007) Mass spectrometric mapping of linker histone H1 variants reveals multiple acetylations, methylations, and phosphorylation as well as differences between cell culture and tissue. Mol. Cell Proteomics 6: 72-87.
-
(2007)
Mol. Cell Proteomics
, vol.6
, pp. 72-87
-
-
Wisniewski, J.R.1
Zougman, A.2
Kruger, S.3
Mann, M.4
-
73
-
-
0344442779
-
Transcriptional regulation by histone ubiquitination and deubiquitination
-
Zhang Y (2003) Transcriptional regulation by histone ubiquitination and deubiquitination. Genes Dev. 17: 2733-2740.
-
(2003)
Genes Dev
, vol.17
, pp. 2733-2740
-
-
Zhang, Y.1
-
74
-
-
33645879818
-
Histone sumoylation is a negative regulator in Saccharomyces cerevisiae and shows dynamic interplay with positive-acting histone modifications
-
Nathan D, Ingvarsdottir K, Sterner DE, Bylebyl GR, Dokmanovic M, et al. (2006) Histone sumoylation is a negative regulator in Saccharomyces cerevisiae and shows dynamic interplay with positive-acting histone modifications. Genes Dev. 20: 966-976.
-
(2006)
Genes Dev
, vol.20
, pp. 966-976
-
-
Nathan, D.1
Ingvarsdottir, K.2
Sterner, D.E.3
Bylebyl, G.R.4
Dokmanovic, M.5
-
75
-
-
33746992118
-
Substrate and functional diversity of lysine acetylation revealed by a proteomics survey
-
Kim SC, Sprung R, Chen Y, Xu Y, Ball H, et al. (2006) Substrate and functional diversity of lysine acetylation revealed by a proteomics survey. Mol. Cell 23: 607-618.
-
(2006)
Mol. Cell
, vol.23
, pp. 607-618
-
-
Kim, S.C.1
Sprung, R.2
Chen, Y.3
Xu, Y.4
Ball, H.5
-
76
-
-
0034695456
-
Rad6-dependent ubiquitination of histone H2B in yeast
-
Robzyk K, Recht J, Osley MA (2000) Rad6-dependent ubiquitination of histone H2B in yeast. Science 287: 501-504.
-
(2000)
Science
, vol.287
, pp. 501-504
-
-
Robzyk, K.1
Recht, J.2
Osley, M.A.3
-
77
-
-
0141483484
-
Identification of novel histone post-translational modifications by peptide mass fingerprinting
-
Zhang L, Eugeni EE, Parthun MR, Freitas MA (2003) Identification of novel histone post-translational modifications by peptide mass fingerprinting. Chromosoma 112: 77-86.
-
(2003)
Chromosoma
, vol.112
, pp. 77-86
-
-
Zhang, L.1
Eugeni, E.E.2
Parthun, M.R.3
Freitas, M.A.4
-
78
-
-
39149121854
-
Nepsilon-formylation of lysine is a widespread post-translational modification of nuclear proteins occurring at residues involved in regulation of chromatin function
-
Wisniewski JR, Zougman A, Mann M (2008) Nepsilon-formylation of lysine is a widespread post-translational modification of nuclear proteins occurring at residues involved in regulation of chromatin function. Nucleic Acids Res. 36: 570-577.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 570-577
-
-
Wisniewski, J.R.1
Zougman, A.2
Mann, M.3
-
79
-
-
20244386577
-
Phosphorylation of histone H4 serine 1 during DNA damage requires casein kinase II in S. cerevisiae
-
Cheung WL, Turner FB, Krishnamoorthy T, Wolner B, Ahn SH, et al. (2005) Phosphorylation of histone H4 serine 1 during DNA damage requires casein kinase II in S. cerevisiae. Curr. Biol. 15: 656-660.
-
(2005)
Curr. Biol.
, vol.15
, pp. 656-660
-
-
Cheung, W.L.1
Turner, F.B.2
Krishnamoorthy, T.3
Wolner, B.4
Ahn, S.H.5
-
80
-
-
34547911052
-
Chemistry of acetyl transfer by histone modifying enzymes: structure, mechanism and implications for effector design
-
Hodawadekar SC, Marmorstein R (2007) Chemistry of acetyl transfer by histone modifying enzymes: structure, mechanism and implications for effector design. Oncogene 26: 5528-5540.
-
(2007)
Oncogene
, vol.26
, pp. 5528-5540
-
-
Hodawadekar, S.C.1
Marmorstein, R.2
-
81
-
-
0030271392
-
The major cytoplasmic histone acetyltransferase in yeast: links to chromatin replication and histone metabolism
-
Parthun MR, Widom J, Gottschling DE (1996) The major cytoplasmic histone acetyltransferase in yeast: links to chromatin replication and histone metabolism. Cell 87: 85-94.
-
(1996)
Cell
, vol.87
, pp. 85-94
-
-
Parthun, M.R.1
Widom, J.2
Gottschling, D.E.3
-
82
-
-
0037406061
-
Class II histone deacetylases: versatile regulators
-
Verdin E, Dequiedt F, Kasler HG (2003) Class II histone deacetylases: versatile regulators. Trends Genet. 19: 286-293.
-
(2003)
Trends Genet
, vol.19
, pp. 286-293
-
-
Verdin, E.1
Dequiedt, F.2
Kasler, H.G.3
-
83
-
-
0027465862
-
A positive role for histone acetylation in transcription factor access to nucleosomal DNA
-
Lee DY, Hayes JJ, Pruss D, Wolffe AP (1993) A positive role for histone acetylation in transcription factor access to nucleosomal DNA. Cell 72: 73-84.
-
(1993)
Cell
, vol.72
, pp. 73-84
-
-
Lee, D.Y.1
Hayes, J.J.2
Pruss, D.3
Wolffe, A.P.4
-
84
-
-
0033519641
-
Structure and ligand of a histone acetyltransferase bromodomain
-
Dhalluin C, Carlson JE, Zeng L, He C, Aggarwal AK, et al. (1999) Structure and ligand of a histone acetyltransferase bromodomain. Nature 399: 491-496.
-
(1999)
Nature
, vol.399
, pp. 491-496
-
-
Dhalluin, C.1
Carlson, J.E.2
Zeng, L.3
He, C.4
Aggarwal, A.K.5
-
85
-
-
0034669210
-
The structural basis for the recognition of acetylated histone H4 by the bromodomain of histone acetyltransferase gcn5p
-
Owen DJ, Ornaghi P, Yang JC, Lowe N, Evans PR, et al. (2000) The structural basis for the recognition of acetylated histone H4 by the bromodomain of histone acetyltransferase gcn5p. EMBO J. 19: 6141-6149
-
(2000)
EMBO J
, vol.19
, pp. 6141-6149
-
-
Owen, D.J.1
Ornaghi, P.2
Yang, J.C.3
Lowe, N.4
Evans, P.R.5
-
86
-
-
0029835806
-
Transcription-linked acetylation by Gcn5p of histones H3 and H4 at specific lysines
-
Kuo MH, Brownell JE, Sobel RE, Ranalli TA, Cook RG, et al. (1996) Transcription-linked acetylation by Gcn5p of histones H3 and H4 at specific lysines. Nature 383: 269-272.
-
(1996)
Nature
, vol.383
, pp. 269-272
-
-
Kuo, M.H.1
Brownell, J.E.2
Sobel, R.E.3
Ranalli, T.A.4
Cook, R.G.5
-
87
-
-
33947313218
-
HDACs, histone deacetylation and gene transcription: from molecular biology to cancer therapeutics
-
Gallinari P, Di Marco S, Jones P, Pallaoro M, Steinkuhler C (2007) HDACs, histone deacetylation and gene transcription: from molecular biology to cancer therapeutics. Cell Res. 17: 195-211.
-
(2007)
Cell Res
, vol.17
, pp. 195-211
-
-
Gallinari, P.1
Di Marco, S.2
Jones, P.3
Pallaoro, M.4
Steinkuhler, C.5
-
88
-
-
0034632829
-
Regulation of chromatin structure by site-specific histone H3 methyltransferases
-
Rea S, Eisenhaber F, O'Carroll D, Strahl BD, Sun ZW, et al. (2000) Regulation of chromatin structure by site-specific histone H3 methyltransferases. Nature 406: 593-599.
-
(2000)
Nature
, vol.406
, pp. 593-599
-
-
Rea, S.1
Eisenhaber, F.2
O'Carroll, D.3
Strahl, B.D.4
Sun, Z.W.5
-
89
-
-
79952534189
-
Regulation of chromatin by histone modifications
-
Bannister AJ, Kouzarides T (2011) Regulation of chromatin by histone modifications. Cell Res. 21: 381-395.
-
(2011)
Cell Res
, vol.21
, pp. 381-395
-
-
Bannister, A.J.1
Kouzarides, T.2
-
90
-
-
0035371872
-
Re-SET-ting heterochromatin by histone methyltransferases
-
Jenuwein T (2001) Re-SET-ting heterochromatin by histone methyltransferases. Trends Cell Biol. 11: 266-273.
-
(2001)
Trends Cell Biol
, vol.11
, pp. 266-273
-
-
Jenuwein, T.1
-
91
-
-
0037421847
-
Structure and catalytic mechanism of the human histone methyltransferase SET7/9
-
Xiao B, Jing C, Wilson JR, Walker PA, Vasisht N, et al. (2003) Structure and catalytic mechanism of the human histone methyltransferase SET7/9. Nature 421: 652-656.
-
(2003)
Nature
, vol.421
, pp. 652-656
-
-
Xiao, B.1
Jing, C.2
Wilson, J.R.3
Walker, P.A.4
Vasisht, N.5
-
92
-
-
0037693853
-
Trimethylated lysine 9 of histone H3 is a mark for DNA methylation in Neurospora crassa
-
Tamaru H, Zhang X, McMillen D, Singh PB, Nakayama J, et al. (2003) Trimethylated lysine 9 of histone H3 is a mark for DNA methylation in Neurospora crassa. Nat. Genet. 34: 75-79.
-
(2003)
Nat. Genet.
, vol.34
, pp. 75-79
-
-
Tamaru, H.1
Zhang, X.2
McMillen, D.3
Singh, P.B.4
Nakayama, J.5
-
93
-
-
0042164227
-
Structural basis for the product specificity of histone lysine methyltransferases
-
Zhang X, Yang Z, Khan SI, Horton JR, Tamaru H, et al. (2003) Structural basis for the product specificity of histone lysine methyltransferases. Mol. Cell 12: 177-185.
-
(2003)
Mol. Cell
, vol.12
, pp. 177-185
-
-
Zhang, X.1
Yang, Z.2
Khan, S.I.3
Horton, J.R.4
Tamaru, H.5
-
94
-
-
67649968054
-
The protein arginine methyltransferase family: an update about function, new perspectives and the physiological role in humans
-
Wolf SS (2009) The protein arginine methyltransferase family: an update about function, new perspectives and the physiological role in humans. Cell Mol. Life Sci. 66: 2109-2121.
-
(2009)
Cell Mol. Life Sci.
, vol.66
, pp. 2109-2121
-
-
Wolf, S.S.1
-
95
-
-
24944535335
-
Regulation of LSD1 histone demethylase activity by its associated factors
-
Shi YJ, Matson C, Lan F, Iwase S, Baba T, et al. (2005) Regulation of LSD1 histone demethylase activity by its associated factors. Mol. Cell 19: 857-864.
-
(2005)
Mol. Cell
, vol.19
, pp. 857-864
-
-
Shi, Y.J.1
Matson, C.2
Lan, F.3
Iwase, S.4
Baba, T.5
-
96
-
-
77953644347
-
Reversal of histone methylation: biochemical and molecular mechanisms of histone demethylases
-
Mosammaparast N, Shi Y (2010) Reversal of histone methylation: biochemical and molecular mechanisms of histone demethylases. Annu. Rev. Biochem. 79: 155-179.
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 155-179
-
-
Mosammaparast, N.1
Shi, Y.2
-
97
-
-
35348938519
-
JMJD6 is a histone arginine demethylase
-
Chang B, Chen Y, Zhao Y, Bruick RK (2007) JMJD6 is a histone arginine demethylase. Science 318: 444-447.
-
(2007)
Science
, vol.318
, pp. 444-447
-
-
Chang, B.1
Chen, Y.2
Zhao, Y.3
Bruick, R.K.4
-
98
-
-
4444372638
-
Histone deimination antagonizes arginine methylation
-
Cuthbert GL, Daujat S, Snowden AW, Erdjument-Bromage H, Hagiwara T, et al. (2004) Histone deimination antagonizes arginine methylation. Cell 118: 545-553.
-
(2004)
Cell
, vol.118
, pp. 545-553
-
-
Cuthbert, G.L.1
Daujat, S.2
Snowden, A.W.3
Erdjument-Bromage, H.4
Hagiwara, T.5
-
99
-
-
45849137524
-
The autoimmune regulator PHD finger binds to non-methylated histone H3K4 to activate gene expression
-
Org T, Chignola F, Hetenyi C, Gaetani M, Rebane A, et al. (2008) The autoimmune regulator PHD finger binds to non-methylated histone H3K4 to activate gene expression. EMBO Rep. 9: 370-376.
-
(2008)
EMBO Rep
, vol.9
, pp. 370-376
-
-
Org, T.1
Chignola, F.2
Hetenyi, C.3
Gaetani, M.4
Rebane, A.5
-
100
-
-
65549095078
-
Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription
-
Li B, Jackson J, Simon MD, Fleharty B, Gogol M, et al. (2009) Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription. J. Biol. Chem. 284: 7970-7976.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 7970-7976
-
-
Li, B.1
Jackson, J.2
Simon, M.D.3
Fleharty, B.4
Gogol, M.5
-
101
-
-
62049086288
-
PRMT5-mediated methylation of histone H4R3 recruits DNMT3A, coupling histone and DNA methylation in gene silencing
-
Zhao Q, Rank G, Tan YT, Li H, Moritz RL, et al. (2009) PRMT5-mediated methylation of histone H4R3 recruits DNMT3A, coupling histone and DNA methylation in gene silencing. Nat. Struct. Mol. Biol. 16: 304-311.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 304-311
-
-
Zhao, Q.1
Rank, G.2
Tan, Y.T.3
Li, H.4
Moritz, R.L.5
-
102
-
-
23844518230
-
Inducible covalent posttranslational modification of histone H3
-
Bode AM, Dong Z (2005) Inducible covalent posttranslational modification of histone H3. Sci. STKE 2005: re4.
-
(2005)
Sci. STKE
, vol.2005
-
-
Bode, A.M.1
Dong, Z.2
-
103
-
-
33749260519
-
Nuclear ADP-ribosylation reactions in mammalian cells: where are we today and where are we going? Microbiol
-
Hassa PO, Haenni SS, Elser M, Hottiger MO (2006) Nuclear ADP-ribosylation reactions in mammalian cells: where are we today and where are we going? Microbiol. Mol. Biol. Rev. 70: 789-829.
-
(2006)
Mol. Biol. Rev.
, vol.70
, pp. 789-829
-
-
Hassa, P.O.1
Haenni, S.S.2
Elser, M.3
Hottiger, M.O.4
-
104
-
-
26844507482
-
Direct identification of ubiquitination sites on ubiquitin-conjugated CHIP using MALDI mass spectrometry
-
Wang D, Xu W, McGrath SC, Patterson C, Neckers L, et al. (2005) Direct identification of ubiquitination sites on ubiquitin-conjugated CHIP using MALDI mass spectrometry. J. Proteome Res. 4: 1554-1560.
-
(2005)
J. Proteome Res.
, vol.4
, pp. 1554-1560
-
-
Wang, D.1
Xu, W.2
McGrath, S.C.3
Patterson, C.4
Neckers, L.5
-
105
-
-
7244234099
-
Role of histone H2A ubiquitination in Polycomb silencing
-
Wang H, Wang L, Erdjument-Bromage H, Vidal M, Tempst P, et al. (2004) Role of histone H2A ubiquitination in Polycomb silencing. Nature 431: 873-878.
-
(2004)
Nature
, vol.431
, pp. 873-878
-
-
Wang, H.1
Wang, L.2
Erdjument-Bromage, H.3
Vidal, M.4
Tempst, P.5
-
106
-
-
36849046285
-
Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS
-
Lee JS, Shukla A, Schneider J, Swanson SK, Washburn MP, et al. (2007) Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS. Cell 131: 1084-1096.
-
(2007)
Cell
, vol.131
, pp. 1084-1096
-
-
Lee, J.S.1
Shukla, A.2
Schneider, J.3
Swanson, S.K.4
Washburn, M.P.5
-
107
-
-
65249105512
-
RAD6-Mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells
-
Kim J, Guermah M, McGinty RK, Lee JS, Tang Z, et al. (2009) RAD6-Mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells. Cell 137: 459-471.
-
(2009)
Cell
, vol.137
, pp. 459-471
-
-
Kim, J.1
Guermah, M.2
McGinty, R.K.3
Lee, J.S.4
Tang, Z.5
-
108
-
-
70349731733
-
Ubiquitination of histone H2B regulates chromatin dynamics by enhancing nucleosome stability
-
Chandrasekharan MB, Huang F, Sun ZW (2009) Ubiquitination of histone H2B regulates chromatin dynamics by enhancing nucleosome stability. Proc. Natl. Acad. Sci. USA 106: 16686-16691.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 16686-16691
-
-
Chandrasekharan, M.B.1
Huang, F.2
Sun, Z.W.3
-
109
-
-
53549112774
-
The histone H2B-specific ubiquitin ligase RNF20/hBRE1 acts as a putative tumor suppressor through selective regulation of gene expression
-
Shema E, Tirosh I, Aylon Y, Huang J, Ye C, et al. (2008) The histone H2B-specific ubiquitin ligase RNF20/hBRE1 acts as a putative tumor suppressor through selective regulation of gene expression. Genes Dev. 22: 2664-2676.
-
(2008)
Genes Dev
, vol.22
, pp. 2664-2676
-
-
Shema, E.1
Tirosh, I.2
Aylon, Y.3
Huang, J.4
Ye, C.5
-
110
-
-
33748163064
-
Proline isomerization of histone H3 regulates lysine methylation and gene expression
-
Nelson CJ, Santos-Rosa H, Kouzarides T (2006) Proline isomerization of histone H3 regulates lysine methylation and gene expression. Cell 126: 905-916.
-
(2006)
Cell
, vol.126
, pp. 905-916
-
-
Nelson, C.J.1
Santos-Rosa, H.2
Kouzarides, T.3
-
111
-
-
78650447665
-
Beta-N-acetylglucosamine (O-GlcNAc) is part of the histone code
-
Sakabe K, Wang Z, Hart GW (2010) Beta-N-acetylglucosamine (O-GlcNAc) is part of the histone code. Proc. Natl. Acad. Sci. USA 107: 19915-19920.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 19915-19920
-
-
Sakabe, K.1
Wang, Z.2
Hart, G.W.3
-
112
-
-
0033638105
-
Phosphorylation of serine 10 in histone H3 is functionally linked in vitro and in vivo to Gcn5-mediated acetylation at lysine 14
-
Lo WS, Trievel RC, Rojas JR, Duggan L, Hsu JY, et al. (2000) Phosphorylation of serine 10 in histone H3 is functionally linked in vitro and in vivo to Gcn5-mediated acetylation at lysine 14. Mol. Cell 5: 917-926.
-
(2000)
Mol. Cell
, vol.5
, pp. 917-926
-
-
Lo, W.S.1
Trievel, R.C.2
Rojas, J.R.3
Duggan, L.4
Hsu, J.Y.5
-
113
-
-
0037119438
-
Site-specific loss of acetylation upon phosphorylation of histone H3
-
Edmondson DG, Davie JK, Zhou J, Mirnikjoo B, Tatchell K, et al. (2002) Site-specific loss of acetylation upon phosphorylation of histone H3. J. Biol. Chem. 277: 29496-29502.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 29496-29502
-
-
Edmondson, D.G.1
Davie, J.K.2
Zhou, J.3
Mirnikjoo, B.4
Tatchell, K.5
-
114
-
-
28844477653
-
Regulation of HP1-chromatin binding by histone H3 methylation and phosphorylation
-
Fischle W, Tseng BS, Dormann HL, Ueberheide BM, Garcia BA, et al. (2005) Regulation of HP1-chromatin binding by histone H3 methylation and phosphorylation. Nature 438: 1116-1122.
-
(2005)
Nature
, vol.438
, pp. 1116-1122
-
-
Fischle, W.1
Tseng, B.S.2
Dormann, H.L.3
Ueberheide, B.M.4
Garcia, B.A.5
-
115
-
-
0037085264
-
Acetylation of the yeast histone H4 N terminus regulates its binding to heterochromatin protein SIR3
-
Carmen AA, Milne L, Grunstein M (2002) Acetylation of the yeast histone H4 N terminus regulates its binding to heterochromatin protein SIR3. J. Biol. Chem. 277: 4778-4781.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 4778-4781
-
-
Carmen, A.A.1
Milne, L.2
Grunstein, M.3
-
116
-
-
20444397430
-
Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF
-
Dou Y, Milne TA, Tackett AJ, Smith ER, Fukuda A, et al. (2005) Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF. Cell 121: 873-885.
-
(2005)
Cell
, vol.121
, pp. 873-885
-
-
Dou, Y.1
Milne, T.A.2
Tackett, A.J.3
Smith, E.R.4
Fukuda, A.5
-
117
-
-
33746324216
-
Chromatin modifications by methylation and ubiquitination: implications in the regulation of gene expression
-
Shilatifard A (2006) Chromatin modifications by methylation and ubiquitination: implications in the regulation of gene expression. Annu. Rev. Biochem. 75: 243-269.
-
(2006)
Annu. Rev. Biochem.
, vol.75
, pp. 243-269
-
-
Shilatifard, A.1
-
118
-
-
33644994575
-
The contradictory definitions of heterochromatin: transcription and silencing
-
Huisinga KL, Brower-Toland B, Elgin SC (2006) The contradictory definitions of heterochromatin: transcription and silencing. Chromosoma 115: 110-122.
-
(2006)
Chromosoma
, vol.115
, pp. 110-122
-
-
Huisinga, K.L.1
Brower-Toland, B.2
Elgin, S.C.3
-
119
-
-
34948839944
-
Facultative heterochromatin: is there a distinctive molecular signature? Mol
-
Trojer P, Reinberg D (2007) Facultative heterochromatin: is there a distinctive molecular signature? Mol. Cell 28: 1-13.
-
(2007)
Cell
, vol.28
, pp. 1-13
-
-
Trojer, P.1
Reinberg, D.2
-
120
-
-
79955625071
-
Constitutive heterochromatin reorganization during somatic cell reprogramming
-
Fussner E, Djuric U, Strauss M, Hotta A, Perez-Iratxeta C, et al. (2011) Constitutive heterochromatin reorganization during somatic cell reprogramming. EMBO J. 30: 1778-1789.
-
(2011)
EMBO J
, vol.30
, pp. 1778-1789
-
-
Fussner, E.1
Djuric, U.2
Strauss, M.3
Hotta, A.4
Perez-Iratxeta, C.5
-
121
-
-
34247132738
-
K12-biotinylated histone H4 marks heterochromatin in human lymphoblastoma cells
-
Camporeale G, Oommen AM, Griffin JB, Sarath G, Zempleni J (2007) K12-biotinylated histone H4 marks heterochromatin in human lymphoblastoma cells. J. Nutr. Biochem. 18: 760-768.
-
(2007)
J. Nutr. Biochem.
, vol.18
, pp. 760-768
-
-
Camporeale, G.1
Oommen, A.M.2
Griffin, J.B.3
Sarath, G.4
Zempleni, J.5
-
122
-
-
0035282573
-
Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins
-
Lachner M, O'Carroll D, Rea S, Mechtler K, Jenuwein T (2001) Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins. Nature 410: 116-120.
-
(2001)
Nature
, vol.410
, pp. 116-120
-
-
Lachner, M.1
O'Carroll, D.2
Rea, S.3
Mechtler, K.4
Jenuwein, T.5
-
123
-
-
0035282458
-
Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain
-
Bannister AJ, Zegerman P, Partridge JF, Miska EA, Thomas JO, et al. (2001) Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain. Nature 410: 120-124.
-
(2001)
Nature
, vol.410
, pp. 120-124
-
-
Bannister, A.J.1
Zegerman, P.2
Partridge, J.F.3
Miska, E.A.4
Thomas, J.O.5
-
124
-
-
2942610993
-
Tethering of HP1 proteins to chromatin is relieved by phosphoacetylation of histone H3
-
Mateescu B, England P, Halgand F, Yaniv M, Muchardt C (2004) Tethering of HP1 proteins to chromatin is relieved by phosphoacetylation of histone H3. EMBO Rep. 5: 490-496.
-
(2004)
EMBO Rep
, vol.5
, pp. 490-496
-
-
Mateescu, B.1
England, P.2
Halgand, F.3
Yaniv, M.4
Muchardt, C.5
-
125
-
-
26444508841
-
Single-nucleosome mapping of histone modifications in S. cerevisiae
-
Liu CL, Kaplan T, Kim M, Buratowski S, Schreiber SL, et al. (2005) Single-nucleosome mapping of histone modifications in S. cerevisiae. PLoS Biol. 3: e328.
-
(2005)
PLoS Biol
, vol.3
-
-
Liu, C.L.1
Kaplan, T.2
Kim, M.3
Buratowski, S.4
Schreiber, S.L.5
-
126
-
-
23944462969
-
Genome-wide map of nucleosome acetylation and methylation in yeast
-
Pokholok DK, Harbison CT, Levine S, Cole M, Hannett NM, et al. (2005) Genome-wide map of nucleosome acetylation and methylation in yeast. Cell 122: 517-527.
-
(2005)
Cell
, vol.122
, pp. 517-527
-
-
Pokholok, D.K.1
Harbison, C.T.2
Levine, S.3
Cole, M.4
Hannett, N.M.5
-
127
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, et al. (2007) High-resolution profiling of histone methylations in the human genome. Cell 129: 823-837.
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
-
128
-
-
77649177097
-
Predictive chromatin signatures in the mammalian genome
-
Hon GC, Hawkins RD, Ren B (2009) Predictive chromatin signatures in the mammalian genome. Hum. Mol. Genet. 18: R195-201.
-
(2009)
Hum. Mol. Genet.
, vol.18
-
-
Hon, G.C.1
Hawkins, R.D.2
Ren, B.3
-
129
-
-
34250307630
-
The landscape of histone modifications across 1% of the human genome in five human cell lines
-
Koch CM, Andrews RM, Flicek P, Dillon SC, Karaoz U, et al. (2007) The landscape of histone modifications across 1% of the human genome in five human cell lines. Genome Res. 17: 691-707.
-
(2007)
Genome Res
, vol.17
, pp. 691-707
-
-
Koch, C.M.1
Andrews, R.M.2
Flicek, P.3
Dillon, S.C.4
Karaoz, U.5
-
130
-
-
78651246115
-
Chromatin landscape: methylation beyond transcription
-
Black JC, Whetstine JR (2011) Chromatin landscape: methylation beyond transcription. Epigenetics 6: 9-15.
-
(2011)
Epigenetics
, vol.6
, pp. 9-15
-
-
Black, J.C.1
Whetstine, J.R.2
-
131
-
-
0025806910
-
DNA methylation and chromatin structure
-
Lewis J, Bird A (1991) DNA methylation and chromatin structure. FEBS Lett. 285: 155-159.
-
(1991)
FEBS Lett
, vol.285
, pp. 155-159
-
-
Lewis, J.1
Bird, A.2
-
132
-
-
0011923583
-
Distribution of 5-methylcytosine in chromatin
-
Razin A, Cedar H (1977) Distribution of 5-methylcytosine in chromatin. Proc. Natl. Acad. Sci. USA 74: 2725-2728.
-
(1977)
Proc. Natl. Acad. Sci. USA
, vol.74
, pp. 2725-2728
-
-
Razin, A.1
Cedar, H.2
-
133
-
-
0017841275
-
Organization of 5-methylcytosine in chromosomal DNA
-
Solage A, Cedar H (1978) Organization of 5-methylcytosine in chromosomal DNA. Biochemistry 17: 2934-2938.
-
(1978)
Biochemistry
, vol.17
, pp. 2934-2938
-
-
Solage, A.1
Cedar, H.2
-
134
-
-
0022545498
-
DNA methylation affects the formation of active chromatin
-
Keshet I, Lieman-Hurwitz J, Cedar H (1986) DNA methylation affects the formation of active chromatin. Cell 44: 535-543.
-
(1986)
Cell
, vol.44
, pp. 535-543
-
-
Keshet, I.1
Lieman-Hurwitz, J.2
Cedar, H.3
-
135
-
-
0021029105
-
5-methylcytosine is localized in nucleosomes that contain histone H1
-
Ball DJ, Gross DS, Garrard WT (1983) 5-methylcytosine is localized in nucleosomes that contain histone H1. Proc. Natl. Acad. Sci. USA 80: 5490-5494.
-
(1983)
Proc. Natl. Acad. Sci. USA
, vol.80
, pp. 5490-5494
-
-
Ball, D.J.1
Gross, D.S.2
Garrard, W.T.3
-
136
-
-
0024378078
-
Specific protection of methylated CpGs in mammalian nuclei
-
Antequera F, Macleod D, Bird AP (1989) Specific protection of methylated CpGs in mammalian nuclei. Cell 58: 509-517.
-
(1989)
Cell
, vol.58
, pp. 509-517
-
-
Antequera, F.1
Macleod, D.2
Bird, A.P.3
-
137
-
-
42649089780
-
The methylome: approaches for global DNA methylation profiling
-
Beck S, Rakyan VK (2008) The methylome: approaches for global DNA methylation profiling. Trends Genet. 24: 231-237.
-
(2008)
Trends Genet
, vol.24
, pp. 231-237
-
-
Beck, S.1
Rakyan, V.K.2
-
138
-
-
84860233933
-
An Insight into the Use of Genome Methylome and Gethylome in Synthetic Biology
-
Ibrahim MA (2012) An Insight into the Use of Genome, Methylome and Gethylome in Synthetic Biology. Asian Journal of Applied Sciences 5: 67-73.
-
(2012)
Asian Journal of Applied Sciences
, vol.5
, pp. 67-73
-
-
Ibrahim, M.A.1
-
139
-
-
79955060261
-
Regulation of expression and activity of DNA (cytosine-5) methyltransferases in mammalian cells
-
Kinney SR, Pradhan S (2011) Regulation of expression and activity of DNA (cytosine-5) methyltransferases in mammalian cells. Prog. Mol. Biol. Transl. Sci. 101: 311-333.
-
(2011)
Prog. Mol. Biol. Transl. Sci.
, vol.101
, pp. 311-333
-
-
Kinney, S.R.1
Pradhan, S.2
-
140
-
-
2942594082
-
Cytosine methylation and CpG TpG (CpA) and TpA frequencies
-
Jabbari K, Bernardi G (2004) Cytosine methylation and CpG, TpG (CpA) and TpA frequencies. Gene 333: 143-149.
-
(2004)
Gene
, vol.333
, pp. 143-149
-
-
Jabbari, K.1
Bernardi, G.2
-
141
-
-
77954811475
-
DNA methylation in cell differentiation and reprogramming: an emerging systematic view
-
Huang K, Fan G (2010) DNA methylation in cell differentiation and reprogramming: an emerging systematic view. Regen. Med. 5: 531-544.
-
(2010)
Regen. Med.
, vol.5
, pp. 531-544
-
-
Huang, K.1
Fan, G.2
-
142
-
-
79956294973
-
DNA methylation and demethylation in mammals
-
Chen ZX, Riggs AD (2011) DNA methylation and demethylation in mammals. J. Biol. Chem. 286: 18347-18353.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 18347-18353
-
-
Chen, Z.X.1
Riggs, A.D.2
-
143
-
-
77956095231
-
Active DNA demethylation: many roads lead to Rome
-
Wu SC, Zhang Y (2010) Active DNA demethylation: many roads lead to Rome. Nat. Rev. Mol. Cell Biol. 11: 607-620.
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 607-620
-
-
Wu, S.C.1
Zhang, Y.2
-
144
-
-
79954993753
-
Lsh, chromatin remodeling family member, modulates genome-wide cytosine methylation patterns at nonrepeat sequences
-
Tao Y, Xi S, Shan J, Maunakea A, Che A, et al. (2011) Lsh, chromatin remodeling family member, modulates genome-wide cytosine methylation patterns at nonrepeat sequences. Proc. Natl. Acad. Sci. USA 108: 5626-5631.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 5626-5631
-
-
Tao, Y.1
Xi, S.2
Shan, J.3
Maunakea, A.4
Che, A.5
-
146
-
-
72849148752
-
Lsh participates in DNA methylation and silencing of stem cell genes
-
Xi S, Geiman TM, Briones V, Guang Tao Y, Xu H, et al. (2009) Lsh participates in DNA methylation and silencing of stem cell genes. Stem Cells 27: 2691-2702.
-
(2009)
Stem Cells
, vol.27
, pp. 2691-2702
-
-
Xi, S.1
Geiman, T.M.2
Briones, V.3
Guang Tao, Y.4
Xu, H.5
-
147
-
-
70450217879
-
Human DNA methylomes at base resolution show widespread epigenomic differences
-
Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, et al. (2009) Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462: 315-322.
-
(2009)
Nature
, vol.462
, pp. 315-322
-
-
Lister, R.1
Pelizzola, M.2
Dowen, R.H.3
Hawkins, R.D.4
Hon, G.5
-
148
-
-
77649267695
-
Dynamic changes in the human methylome during differentiation
-
Laurent L, Wong E, Li G, Huynh T, Tsirigos A, et al. (2010) Dynamic changes in the human methylome during differentiation. Genome Res. 20: 320-331.
-
(2010)
Genome Res
, vol.20
, pp. 320-331
-
-
Laurent, L.1
Wong, E.2
Li, G.3
Huynh, T.4
Tsirigos, A.5
-
149
-
-
79961210587
-
DNA methylation in higher plants: past, present and future
-
Vanyushin BF, Ashapkin VV (2011) DNA methylation in higher plants: past, present and future. Biochim. Biophys. Acta 1809: 360-368.
-
(2011)
Biochim. Biophys. Acta
, vol.1809
, pp. 360-368
-
-
Vanyushin, B.F.1
Ashapkin, V.V.2
-
150
-
-
78449236569
-
Human non-CG methylation: are human stem cells plant-like?
-
Dyachenko OV, Schevchuk TV, Kretzner L, Buryanov YI, Smith SS (2010) Human non-CG methylation: are human stem cells plant-like? Epigenetics 5: 569-572
-
(2010)
Epigenetics
, vol.5
, pp. 569-572
-
-
Dyachenko, O.V.1
Schevchuk, T.V.2
Kretzner, L.3
Buryanov, Y.I.4
Smith, S.S.5
-
151
-
-
84855281409
-
Genomic distribution and inter-sample variation of non-CpG methylation across human cell types
-
Ziller MJ, Muller F, Liao J, Zhang Y, Gu H, et al. (2011) Genomic distribution and inter-sample variation of non-CpG methylation across human cell types. PLoS Genet. 7: e1002389.
-
(2011)
PLoS Genet
, vol.7
-
-
Ziller, M.J.1
Muller, F.2
Liao, J.3
Zhang, Y.4
Gu, H.5
-
152
-
-
79952264847
-
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells
-
Lister R, Pelizzola M, Kida YS, Hawkins RD, Nery JR, et al. (2011) Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature 471: 68-73.
-
(2011)
Nature
, vol.471
, pp. 68-73
-
-
Lister, R.1
Pelizzola, M.2
Kida, Y.S.3
Hawkins, R.D.4
Nery, J.R.5
-
153
-
-
77951116072
-
CpG islands influence chromatin structure via the CpG-binding protein Cfp1
-
Thomson JP, Skene PJ, Selfridge J, Clouaire T, Guy J, et al. (2010) CpG islands influence chromatin structure via the CpG-binding protein Cfp1. Nature 464: 1082-1086.
-
(2010)
Nature
, vol.464
, pp. 1082-1086
-
-
Thomson, J.P.1
Skene, P.J.2
Selfridge, J.3
Clouaire, T.4
Guy, J.5
-
154
-
-
34648833002
-
UHRF1 plays a role in maintaining DNA methylation in mammalian cells
-
Bostick M, Kim JK, Esteve PO, Clark A, Pradhan S, et al. (2007) UHRF1 plays a role in maintaining DNA methylation in mammalian cells. Science 317: 1760-1764.
-
(2007)
Science
, vol.317
, pp. 1760-1764
-
-
Bostick, M.1
Kim, J.K.2
Esteve, P.O.3
Clark, A.4
Pradhan, S.5
-
155
-
-
76849094693
-
Neuronal MeCP2 is expressed at near histone-octamer levels and globally alters the chromatin state
-
Skene PJ, Illingworth RS, Webb S, Kerr AR, James KD, et al. (2010) Neuronal MeCP2 is expressed at near histone-octamer levels and globally alters the chromatin state. Mol. Cell 37: 457-468.
-
(2010)
Mol. Cell
, vol.37
, pp. 457-468
-
-
Skene, P.J.1
Illingworth, R.S.2
Webb, S.3
Kerr, A.R.4
James, K.D.5
-
156
-
-
66149123748
-
The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain
-
Kriaucionis S, Heintz N (2009) The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain. Science 324: 929-930.
-
(2009)
Science
, vol.324
, pp. 929-930
-
-
Kriaucionis, S.1
Heintz, N.2
-
157
-
-
66149146320
-
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
Tahiliani M, Koh KP, Shen Y, Pastor WA, Bandukwala H, et al. (2009) Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 324: 930-935.
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
Pastor, W.A.4
Bandukwala, H.5
-
159
-
-
77954842819
-
Quantification of the sixth DNA base hydroxymethylcytosine in the brain
-
Munzel M, Globisch D, Bruckl T, Wagner M, Welzmiller V, et al. (2010) Quantification of the sixth DNA base hydroxymethylcytosine in the brain. Angew. Chem. Int. Ed. Engl. 49: 5375-5377.
-
(2010)
Angew. Chem. Int. Ed. Engl.
, vol.49
, pp. 5375-5377
-
-
Munzel, M.1
Globisch, D.2
Bruckl, T.3
Wagner, M.4
Welzmiller, V.5
-
160
-
-
79956323623
-
Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation
-
Ficz G, Branco MR, Seisenberger S, Santos F, Krueger F, et al. (2011) Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation. Nature 473: 398-402.
-
(2011)
Nature
, vol.473
, pp. 398-402
-
-
Ficz, G.1
Branco, M.R.2
Seisenberger, S.3
Santos, F.4
Krueger, F.5
-
161
-
-
78651280460
-
Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine
-
Song CX, Szulwach KE, Fu Y, Dai Q, Yi C, et al. (2011) Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine. Nat. Biotechnol. 29: 68-72.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 68-72
-
-
Song, C.X.1
Szulwach, K.E.2
Fu, Y.3
Dai, Q.4
Yi, C.5
-
162
-
-
79954457998
-
Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells
-
Wu H, D'Alessio AC, Ito S, Wang Z, Cui K, et al. (2011) Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells. Genes Dev. 25: 679-684.
-
(2011)
Genes Dev
, vol.25
, pp. 679-684
-
-
Wu, H.1
D'Alessio, A.C.2
Ito, S.3
Wang, Z.4
Cui, K.5
-
163
-
-
80052461558
-
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
-
Ito S, Shen L, Dai Q, Wu SC, Collins LB, et al. (2011) Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science 333: 1300-1303.
-
(2011)
Science
, vol.333
, pp. 1300-1303
-
-
Ito, S.1
Shen, L.2
Dai, Q.3
Wu, S.C.4
Collins, L.B.5
-
164
-
-
82655187105
-
Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development
-
Inoue A, Shen L, Dai Q, He C, Zhang Y (2011) Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development. Cell Res. 21: 1670-1676.
-
(2011)
Cell Res
, vol.21
, pp. 1670-1676
-
-
Inoue, A.1
Shen, L.2
Dai, Q.3
He, C.4
Zhang, Y.5
-
165
-
-
80052495940
-
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA
-
He YF, Li BZ, Li Z, Liu P, Wang Y, et al. (2011) Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science 333: 1303-1307.
-
(2011)
Science
, vol.333
, pp. 1303-1307
-
-
He, Y.F.1
Li, B.Z.2
Li, Z.3
Liu, P.4
Wang, Y.5
-
166
-
-
82955207588
-
Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation
-
Wu H, Zhang Y (2011) Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation. Genes Dev. 25: 2436-2452.
-
(2011)
Genes Dev
, vol.25
, pp. 2436-2452
-
-
Wu, H.1
Zhang, Y.2
-
167
-
-
77956189495
-
Role of Tet proteins in 5mC to 5hmC conversion ES-cell self-renewal and inner cell mass specification
-
Ito S, D'Alessio AC, Taranova OV, Hong K, Sowers LC, et al. (2010) Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature 466: 1129-1133.
-
(2010)
Nature
, vol.466
, pp. 1129-1133
-
-
Ito, S.1
D'Alessio, A.C.2
Taranova, O.V.3
Hong, K.4
Sowers, L.C.5
-
169
-
-
84860388901
-
Active DNA demethylation by oxidation and repair
-
Gong Z, Zhu JK (2011) Active DNA demethylation by oxidation and repair. Cell Res. 21: 1649-1651.
-
(2011)
Cell Res
, vol.21
, pp. 1649-1651
-
-
Gong, Z.1
Zhu, J.K.2
-
170
-
-
83855163995
-
Uncovering the role of 5-hydroxymethylcytosine in the epigenome
-
Branco MR, Ficz G, Reik W (2012) Uncovering the role of 5-hydroxymethylcytosine in the epigenome. Nat. Rev. Genet. 13: 7-13.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 7-13
-
-
Branco, M.R.1
Ficz, G.2
Reik, W.3
-
171
-
-
0036383067
-
Chromatin remodeling, histone modifications, and DNA methylation-how does it all fit together?
-
Geiman TM, Robertson KD (2002) Chromatin remodeling, histone modifications, and DNA methylation-how does it all fit together? J. Cell Biochem. 87: 117-125.
-
(2002)
J Cell Biochem
, vol.87
, pp. 117-125
-
-
Geiman, T.M.1
Robertson, K.D.2
-
172
-
-
0036733675
-
Chromatin modification and epigenetic reprogramming in mammalian development
-
Li E (2002) Chromatin modification and epigenetic reprogramming in mammalian development. Nat. Rev. Genet. 3: 662-673.
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 662-673
-
-
Li, E.1
-
174
-
-
70449701913
-
Epigenetic cross-talk between DNA methylation and histone modifications in human cancers
-
Kondo Y (2009) Epigenetic cross-talk between DNA methylation and histone modifications in human cancers. Yonsei Med. J. 50: 455-463.
-
(2009)
Yonsei Med. J.
, vol.50
, pp. 455-463
-
-
Kondo, Y.1
-
175
-
-
79959859654
-
Integrating 5-hydroxymethylcytosine into the epigenomic landscape of human embryonic stem cells
-
Szulwach KE, Li X, Li Y, Song CX, Han JW, et al. (2011) Integrating 5-hydroxymethylcytosine into the epigenomic landscape of human embryonic stem cells. PLoS Genet. 7: e1002154.
-
(2011)
PLoS Genet
, vol.7
-
-
Szulwach, K.E.1
Li, X.2
Li, Y.3
Song, C.X.4
Han, J.W.5
-
176
-
-
4344685735
-
Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assembly
-
Sarraf SA, Stancheva I (2004) Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assembly. Mol. Cell 15: 595-605.
-
(2004)
Mol. Cell
, vol.15
, pp. 595-605
-
-
Sarraf, S.A.1
Stancheva, I.2
-
177
-
-
0037591867
-
Methyl-CpG binding domain 1 (MBD1) interacts with the Suv39h1-HP1 heterochromatic complex for DNA methylation-based transcriptional repression
-
Fujita N, Watanabe S, Ichimura T, Tsuruzoe S, Shinkai Y, et al. (2003) Methyl-CpG binding domain 1 (MBD1) interacts with the Suv39h1-HP1 heterochromatic complex for DNA methylation-based transcriptional repression. J. Biol. Chem. 278: 24132-24138.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 24132-24138
-
-
Fujita, N.1
Watanabe, S.2
Ichimura, T.3
Tsuruzoe, S.4
Shinkai, Y.5
-
178
-
-
84858327532
-
Linking Epigenetics to Human Disease and Rett Syndrome: The Emerging Novel and Challenging Concepts in MeCP2 Research
-
Zachariah RM, Rastegar M (2012) Linking Epigenetics to Human Disease and Rett Syndrome: The Emerging Novel and Challenging Concepts in MeCP2 Research, Neural Plasticity 2012: 10
-
(2012)
Neural Plasticity 2012
, pp. 10
-
-
Zachariah, R.M.1
Rastegar, M.2
-
179
-
-
0037423186
-
The methyl-CpG-binding protein MeCP2 links DNA methylation to histone methylation
-
Fuks F, Hurd PJ, Wolf D, Nan X, Bird AP, et al. (2003) The methyl-CpG-binding protein MeCP2 links DNA methylation to histone methylation. J. Biol. Chem. 278: 4035-4040.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 4035-4040
-
-
Fuks, F.1
Hurd, P.J.2
Wolf, D.3
Nan, X.4
Bird, A.P.5
-
180
-
-
84864463122
-
Low values of 5-hydroxymethylcytosine (5hmC), the sixth base, are associated with anaplasia in human brain tumors
-
Kraus TF, Globisch D, Wagner M, Eigenbrod S, Widmann D, et al. (2012) Low values of 5-hydroxymethylcytosine (5hmC), the sixth base, are associated with anaplasia in human brain tumors. Int. J. Cancer.
-
(2012)
Int. J. Cancer.
-
-
Kraus, T.F.1
Globisch, D.2
Wagner, M.3
Eigenbrod, S.4
Widmann, D.5
-
181
-
-
79959209733
-
5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells
-
Stroud H, Feng S, Morey Kinney S, Pradhan S, Jacobsen SE (2011) 5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells. Genome Biol. 12: R54.
-
(2011)
Genome Biol
, vol.12
-
-
Stroud, H.1
Feng, S.2
Morey Kinney, S.3
Pradhan, S.4
Jacobsen, S.E.5
-
182
-
-
45849105557
-
MeCP2, a key contributor to neurological disease, activates and represses transcription
-
Chahrour M, Jung SY, Shaw C, Zhou X, Wong ST, et al. (2008) MeCP2, a key contributor to neurological disease, activates and represses transcription. Science 320: 1224-1229.
-
(2008)
Science
, vol.320
, pp. 1224-1229
-
-
Chahrour, M.1
Jung, S.Y.2
Shaw, C.3
Zhou, X.4
Wong, S.T.5
-
183
-
-
84861075495
-
DNA Methylation in Plants: Relationship with Small RNAs and Histone Modifications, and Functions in Transposon Inactivation
-
Saze H, Tsugane K, Kanno T, Nishimura T (2012) DNA Methylation in Plants: Relationship with Small RNAs and Histone Modifications, and Functions in Transposon Inactivation. Plant Cell Physiol.
-
(2012)
Plant Cell Physiol
-
-
Saze, H.1
Tsugane, K.2
Kanno, T.3
Nishimura, T.4
-
184
-
-
0035962668
-
Methyl CpG binding proteins: coupling chromatin architecture to gene regulation
-
Wade PA (2001) Methyl CpG binding proteins: coupling chromatin architecture to gene regulation. Oncogene 20: 3166-3173.
-
(2001)
Oncogene
, vol.20
, pp. 3166-3173
-
-
Wade, P.A.1
-
185
-
-
44449140370
-
Methyl-CpG binding proteins: specialized transcriptional repressors or structural components of chromatin?
-
Clouaire T, Stancheva I (2008) Methyl-CpG binding proteins: specialized transcriptional repressors or structural components of chromatin? Cell Mol. Life Sci. 65: 1509-1522.
-
(2008)
Cell Mol Life Sci
, vol.65
, pp. 1509-1522
-
-
Clouaire, T.1
Stancheva, I.2
-
186
-
-
0042357071
-
Chromatin compaction by human MeCP2 Assembly of novel secondary chromatin structures in the absence of DNA methylation
-
Georgel PT, Horowitz-Scherer RA, Adkins N, Woodcock CL, Wade PA, et al. (2003) Chromatin compaction by human MeCP2. Assembly of novel secondary chromatin structures in the absence of DNA methylation. J. Biol. Chem. 278: 32181-32188.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 32181-32188
-
-
Georgel, P.T.1
Horowitz-Scherer, R.A.2
Adkins, N.3
Woodcock, C.L.4
Wade, P.A.5
-
187
-
-
11244328520
-
Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome
-
Horike S, Cai S, Miyano M, Cheng JF, Kohwi-Shigematsu T (2005) Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome. Nat. Genet. 37: 31-40.
-
(2005)
Nat. Genet.
, vol.37
, pp. 31-40
-
-
Horike, S.1
Cai, S.2
Miyano, M.3
Cheng, J.F.4
Kohwi-Shigematsu, T.5
-
188
-
-
20144379888
-
Brahma links the SWI/SNF chromatin-remodeling complex with MeCP2-dependent transcriptional silencing
-
Harikrishnan KN, Chow MZ, Baker EK, Pal S, Bassal S, et al. (2005) Brahma links the SWI/SNF chromatin-remodeling complex with MeCP2-dependent transcriptional silencing. Nat. Genet. 37: 254-264.
-
(2005)
Nat. Genet.
, vol.37
, pp. 254-264
-
-
Harikrishnan, K.N.1
Chow, M.Z.2
Baker, E.K.3
Pal, S.4
Bassal, S.5
-
189
-
-
33847282970
-
Interaction between chromatin proteins MECP2 and ATRX is disrupted by mutations that cause inherited mental retardation
-
Nan X, Hou J, Maclean A, Nasir J, Lafuente MJ, et al. (2007) Interaction between chromatin proteins MECP2 and ATRX is disrupted by mutations that cause inherited mental retardation. Proc. Natl. Acad. Sci. USA 104: 2709-2714.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 2709-2714
-
-
Nan, X.1
Hou, J.2
Maclean, A.3
Nasir, J.4
Lafuente, M.J.5
-
190
-
-
79960844248
-
Cancer biology and NuRD: a multifaceted chromatin remodelling complex
-
Lai AY, Wade PA (2011) Cancer biology and NuRD: a multifaceted chromatin remodelling complex. Nat. Rev. Cancer 11: 588-596.
-
(2011)
Nat. Rev. Cancer
, vol.11
, pp. 588-596
-
-
Lai, A.Y.1
Wade, P.A.2
-
191
-
-
0141638426
-
N-CoR mediates DNA methylation-dependent repression through a methyl CpG binding protein Kaiso
-
Yoon HG, Chan DW, Reynolds AB, Qin J, Wong J (2003) N-CoR mediates DNA methylation-dependent repression through a methyl CpG binding protein Kaiso. Mol. Cell 12: 723-734.
-
(2003)
Mol. Cell
, vol.12
, pp. 723-734
-
-
Yoon, H.G.1
Chan, D.W.2
Reynolds, A.B.3
Qin, J.4
Wong, J.5
-
192
-
-
80053443628
-
A SILAC-based screen for Methyl-CpG binding proteins identifies RBP-J as a DNA methylation and sequence-specific binding protein
-
Bartels SJ, Spruijt CG, Brinkman AB, Jansen PW, Vermeulen M, et al. (2011) A SILAC-based screen for Methyl-CpG binding proteins identifies RBP-J as a DNA methylation and sequence-specific binding protein. PLoS One 6: e25884.
-
(2011)
PLoS One
, vol.6
-
-
Bartels, S.J.1
Spruijt, C.G.2
Brinkman, A.B.3
Jansen, P.W.4
Vermeulen, M.5
-
193
-
-
0344668731
-
Analysis of mammalian proteins involved in chromatin modification reveals new metaphase centromeric proteins and distinct chromosomal distribution patterns
-
Craig JM, Earle E, Canham P, Wong LH, Anderson M, et al. (2003) Analysis of mammalian proteins involved in chromatin modification reveals new metaphase centromeric proteins and distinct chromosomal distribution patterns. Hum. Mol. Genet. 12: 3109-3121.
-
(2003)
Hum. Mol. Genet.
, vol.12
, pp. 3109-3121
-
-
Craig, J.M.1
Earle, E.2
Canham, P.3
Wong, L.H.4
Anderson, M.5
-
194
-
-
22344441631
-
Methyl CpG-binding proteins induce large-scale chromatin reorganization during terminal differentiation
-
Brero A, Easwaran HP, Nowak D, Grunewald I, Cremer T, et al. (2005) Methyl CpG-binding proteins induce large-scale chromatin reorganization during terminal differentiation. J. Cell Biol. 169: 733-743.
-
(2005)
J. Cell Biol.
, vol.169
, pp. 733-743
-
-
Brero, A.1
Easwaran, H.P.2
Nowak, D.3
Grunewald, I.4
Cremer, T.5
-
195
-
-
34548799689
-
MeCP2 interacts with HP1 and modulates its heterochromatin association during myogenic differentiation
-
Agarwal N, Hardt T, Brero A, Nowak D, Rothbauer U, et al. (2007) MeCP2 interacts with HP1 and modulates its heterochromatin association during myogenic differentiation. Nucleic Acids Res. 35: 5402-5408.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5402-5408
-
-
Agarwal, N.1
Hardt, T.2
Brero, A.3
Nowak, D.4
Rothbauer, U.5
-
196
-
-
77956683757
-
MeCP2 binds cooperatively to its substrate and competes with histone H1 for chromatin binding sites
-
Ghosh RP, Horowitz-Scherer RA, Nikitina T, Shlyakhtenko LS, Woodcock CL (2010) MeCP2 binds cooperatively to its substrate and competes with histone H1 for chromatin binding sites. Mol. Cell Biol. 30: 4656-4670.
-
(2010)
Mol. Cell Biol.
, vol.30
, pp. 4656-4670
-
-
Ghosh, R.P.1
Horowitz-Scherer, R.A.2
Nikitina, T.3
Shlyakhtenko, L.S.4
Woodcock, C.L.5
-
197
-
-
85128488318
-
-
Nucleic Acids Res
-
Thambirajah AA, Ng MK, Frehlick LJ, Li A, Serpa JJ, et al. (2011) MeCP2 binds to nucleosome free (linker DNA) regions and to H3K9/H3K27 methylated nucleosomes in the brain. Nucleic Acids Res.
-
(2011)
MeCP2 binds to nucleosome free (linker DNA) regions and to H3K9/H3K27 methylated nucleosomes in the brain
-
-
Thambirajah, A.A.1
Ng, M.K.2
Frehlick, L.J.3
Li, A.4
Serpa, J.J.5
-
198
-
-
33846637375
-
Multiple modes of interaction between the methylated DNA binding protein MeCP2 and chromatin
-
Nikitina T, Shi X, Ghosh RP, Horowitz-Scherer RA, Hansen JC, et al. (2007) Multiple modes of interaction between the methylated DNA binding protein MeCP2 and chromatin. Mol. Cell Biol. 27: 864-877.
-
(2007)
Mol. Cell Biol.
, vol.27
, pp. 864-877
-
-
Nikitina, T.1
Shi, X.2
Ghosh, R.P.3
Horowitz-Scherer, R.A.4
Hansen, J.C.5
-
199
-
-
37649022627
-
Integrated epigenomic analyses of neuronal MeCP2 reveal a role for long-range interaction with active genes
-
Yasui DH, Peddada S, Bieda MC, Vallero RO, Hogart A, et al. (2007) Integrated epigenomic analyses of neuronal MeCP2 reveal a role for long-range interaction with active genes. Proc. Natl. Acad. Sci. USA 104: 19416-19421.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 19416-19421
-
-
Yasui, D.H.1
Peddada, S.2
Bieda, M.C.3
Vallero, R.O.4
Hogart, A.5
-
200
-
-
79951962788
-
Binding of the Rett syndrome protein, MeCP2, to methylated and unmethylated DNA and chromatin
-
Hansen JC, Ghosh RP, Woodcock CL (2010) Binding of the Rett syndrome protein, MeCP2, to methylated and unmethylated DNA and chromatin. IUBMB Life 62: 732-738.
-
(2010)
IUBMB Life
, vol.62
, pp. 732-738
-
-
Hansen, J.C.1
Ghosh, R.P.2
Woodcock, C.L.3
-
201
-
-
34948908780
-
MeCP2-chromatin interactions include the formation of chromatosome-like structures and are altered in mutations causing Rett syndrome
-
Nikitina T, Ghosh RP, Horowitz-Scherer RA, Hansen JC, Grigoryev SA, et al. (2007) MeCP2-chromatin interactions include the formation of chromatosome-like structures and are altered in mutations causing Rett syndrome. J. Biol. Chem. 282: 28237-28245.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 28237-28245
-
-
Nikitina, T.1
Ghosh, R.P.2
Horowitz-Scherer, R.A.3
Hansen, J.C.4
Grigoryev, S.A.5
-
202
-
-
80053997718
-
MeCP2 Rett mutations affect large scale chromatin organization
-
Agarwal N, Becker A, Jost KL, Haase S, Thakur BK, et al. (2011) MeCP2 Rett mutations affect large scale chromatin organization. Hum. Mol. Genet. 20: 4187-4195.
-
(2011)
Hum. Mol. Genet.
, vol.20
, pp. 4187-4195
-
-
Agarwal, N.1
Becker, A.2
Jost, K.L.3
Haase, S.4
Thakur, B.K.5
|