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Volumn 53, Issue 5, 2012, Pages 766-784

DNA methylation in plants: Relationship to small rnas and histone modifications, and functions in transposon inactivation

Author keywords

DNA demethylation; DNA methylation; Histone modification; MBD; RdDM; Transposon

Indexed keywords

HISTONE; PLANT RNA;

EID: 84861075495     PISSN: 00320781     EISSN: 14719053     Source Type: Journal    
DOI: 10.1093/pcp/pcs008     Document Type: Review
Times cited : (172)

References (216)
  • 2
    • 0034636551 scopus 로고    scopus 로고
    • Disruption of the plant gene MOM releases transcriptional silencing of methylated genes
    • DOI 10.1038/35012108
    • Amedeo, P., Habu, Y., Afsar, K., Scheid, O.M. and Paszkowski, J. (2000) Disruption of the plant gene MOM releases transcriptional silencing of methylated genes. Nature 405: 203-206. (Pubitemid 30313541)
    • (2000) Nature , vol.405 , Issue.6783 , pp. 203-206
    • Amedeo, P.1    Habu, Y.2    Afsar, K.3    Scheld, O.M.4    Paszkowski, J.5
  • 3
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome Initiative
    • Arabidopsis Genome Initiative. (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 4
    • 53649097070 scopus 로고    scopus 로고
    • Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism
    • Arita, K., Ariyoshi, M., Tochio, H., Nakamura, Y. and Shirakawa, M. (2008) Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism. Nature 455: 818-821.
    • (2008) Nature , vol.455 , pp. 818-821
    • Arita, K.1    Ariyoshi, M.2    Tochio, H.3    Nakamura, Y.4    Shirakawa, M.5
  • 5
    • 71449098588 scopus 로고    scopus 로고
    • IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana
    • Ausin, I., Mockler, T.C., Chory, J. and Jacobsen, S.E. (2009) IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana. Nat. Struct. Mol. Biol. 16: 1325-1327.
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 1325-1327
    • Ausin, I.1    Mockler, T.C.2    Chory, J.3    Jacobsen, S.E.4
  • 6
    • 0024116538 scopus 로고
    • Molecular mechanisms in the developmental regulation of the maize Suppressor-mutator transposable element
    • Banks, J.A., Masson, P. and Fedoroff, N. (1988) Molecular mechanisms in the developmental regulation of the maize Suppressor-mutator transposable element. Genes Dev. 2: 1364-1380.
    • (1988) Genes Dev. , vol.2 , pp. 1364-1380
    • Banks, J.A.1    Masson, P.2    Fedoroff, N.3
  • 7
    • 0024843353 scopus 로고
    • Patterns of developmental and heritable change in methylation of the Suppressor-mutator transposable element
    • DOI 10.1002/dvg.1020100604
    • Banks, J.A. and Fedoroff, N. (1989) Patterns of developmental and heritable change in methylation of the Suppressor-mutator transposable element. Dev. Genet. 10: 425-437. (Pubitemid 20039278)
    • (1989) Developmental Genetics , vol.10 , Issue.6 , pp. 425-437
    • Banks, J.A.1    Fedoroff, N.2
  • 8
    • 0035878120 scopus 로고    scopus 로고
    • Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene
    • DOI 10.1101/gad.905701
    • Bartee, L., Malagnac, F. and Bender, J. (2001) Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene. Genes Dev. 15: 1753-1758. (Pubitemid 32905632)
    • (2001) Genes and Development , vol.15 , Issue.14 , pp. 1753-1758
    • Bartee, L.1    Malagnac, F.2    Bender, J.3
  • 9
    • 0035503921 scopus 로고    scopus 로고
    • The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes
    • Baumbusch, L.O., Thorstensen, T., Krauss, V., Fischer, A., Naumann, K., Assalkhou, R. et al. (2001) The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes. Nucleic Acids Res. 29: 4319-4333. (Pubitemid 33064772)
    • (2001) Nucleic Acids Research , vol.29 , Issue.21 , pp. 4319-4333
    • Baumbusch, L.O.1    Thorstensen, T.2    Krauss, V.3    Fischer, A.4    Naumann, K.5    Assalkhou, R.6    Schulz, I.7    Reuter, G.8    Aalen, R.B.9
  • 10
    • 0034713375 scopus 로고    scopus 로고
    • Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene
    • DOI 10.1038/35013100
    • Bell, A.C. and Felsenfeld, G. (2000) Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene. Nature 405: 482-485. (Pubitemid 30367427)
    • (2000) Nature , vol.405 , Issue.6785 , pp. 482-485
    • Bell, A.C.1    Felsenfeld, G.2
  • 11
    • 52349089796 scopus 로고    scopus 로고
    • Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana
    • Bernatavichute, Y.V., Zhang, X., Cokus, S., Pellegrini, M. and Jacobsen, S.E. (2008) Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PLoS One 3: e3156.
    • (2008) PLoS One , vol.3
    • Bernatavichute, Y.V.1    Zhang, X.2    Cokus, S.3    Pellegrini, M.4    Jacobsen, S.E.5
  • 12
    • 67349099134 scopus 로고    scopus 로고
    • RNA-directed DNA methylation requires an AGO4-interacting member of the SPT5 elongation factor family
    • Bies-Etheve, N., Pontier, D., Lahmy, S., Picart, C., Vega, D., Cooke, R. et al. (2009) RNA-directed DNA methylation requires an AGO4-interacting member of the SPT5 elongation factor family. EMBO Rep. 10: 649-654.
    • (2009) EMBO Rep. , vol.10 , pp. 649-654
    • Bies-Etheve, N.1    Pontier, D.2    Lahmy, S.3    Picart, C.4    Vega, D.5    Cooke, R.6
  • 13
    • 0036144048 scopus 로고    scopus 로고
    • DNA methylation patterns and epigenetic memory
    • DOI 10.1101/gad.947102
    • Bird, A. (2002) DNA methylation patterns and epigenetic memory. Genes Dev. 16: 6-21. (Pubitemid 34049633)
    • (2002) Genes and Development , vol.16 , Issue.1 , pp. 6-21
    • Bird, A.1
  • 14
    • 34648833002 scopus 로고    scopus 로고
    • UHRF1 plays a role in maintaining DNA methylation in mammalian cells
    • DOI 10.1126/science.1147939
    • Bostick, M., Kim, J.K., Esteve, P.O., Clark, A., Pradhan, S. and Jacobsen, S.E. (2007) UHRF1 plays a role in maintaining DNA methylation in mammalian cells. Science 317: 1760-1764. (Pubitemid 47461842)
    • (2007) Science , vol.317 , Issue.5845 , pp. 1760-1764
    • Bostick, M.1    Jong, K.K.2    Esteve, P.-O.3    Clark, A.4    Pradhan, S.5    Jacobsen, S.E.6
  • 15
    • 59849121326 scopus 로고    scopus 로고
    • The methyl-CpG binding proteins MeCP2, MBD2 and Kaiso are dispensable for mouse embryogenesis, but play a redundant function in neural differentiation
    • Caballero, I.M., Hansen, J., Leaford, D., Pollard, S. and Hendrich, B.D. (2009) The methyl-CpG binding proteins MeCP2, MBD2 and Kaiso are dispensable for mouse embryogenesis, but play a redundant function in neural differentiation. PLoS One 4: e4315.
    • (2009) PLoS One , vol.4
    • Caballero, I.M.1    Hansen, J.2    Leaford, D.3    Pollard, S.4    Hendrich, B.D.5
  • 16
    • 50849086080 scopus 로고    scopus 로고
    • Divergent evolution of CHD3 proteins resulted in MOM1 refining epigenetic control in vascular plants
    • Caikovski, M., Yokthongwattana, C., Habu, Y., Nishimura, T., Mathieu, O. and Paszkowski, J. (2008) Divergent evolution of CHD3 proteins resulted in MOM1 refining epigenetic control in vascular plants. PLoS Genet. 4: e1000165.
    • (2008) PLoS Genet. , vol.4
    • Caikovski, M.1    Yokthongwattana, C.2    Habu, Y.3    Nishimura, T.4    Mathieu, O.5    Paszkowski, J.6
  • 18
    • 0037046810 scopus 로고    scopus 로고
    • Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing
    • DOI 10.1016/S0960-9822(02)00925-9, PII S0960982202009259
    • Cao, X. and Jacobsen, S.E. (2002) Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr. Biol. 12: 1138-1144. (Pubitemid 34766938)
    • (2002) Current Biology , vol.12 , Issue.13 , pp. 1138-1144
    • Cao, X.1    Jacobsen, S.E.2
  • 19
    • 0347033302 scopus 로고    scopus 로고
    • Role of the DRM and CMT3 Methyltransferases in RNA-Directed DNA Methylation
    • DOI 10.1016/j.cub.2003.11.052
    • Cao, X., Aufsatz, W., Zilberman, D., Mette, M.F., Huang, M.S., Matzke, M. et al. (2003) Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr. Biol. 13: 2212-2217. (Pubitemid 38024949)
    • (2003) Current Biology , vol.13 , Issue.24 , pp. 2212-2217
    • Cao, X.1    Aufsatz, W.2    Zilberman, D.3    Mette, M.F.4    Huang, M.S.5    Matzke, M.6    Jacobsen, S.E.7
  • 20
    • 17744364327 scopus 로고    scopus 로고
    • Gardening the genome: DNA methylation in Arabidopsis thaliana
    • DOI 10.1038/nrg1601
    • Chan, S.W., Henderson, I.R. and Jacobsen, S.E. (2005) Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat. Rev. Genet. 6: 351-360. (Pubitemid 40577179)
    • (2005) Nature Reviews Genetics , vol.6 , Issue.5 , pp. 351-360
    • Chan, S.W.-L.1    Henderson, I.R.2    Jacobsen, S.E.3
  • 21
    • 33745726564 scopus 로고    scopus 로고
    • RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in Arabidopsis
    • Chan, S.W., Henderson, I.R., Zhang, X., Shah, G., Chien, J.S. and Jacobsen, S.E. (2006) RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in Arabidopsis. PLoS Genet. 2: e83.
    • (2006) PLoS Genet. , vol.2
    • Chan, S.W.1    Henderson, I.R.2    Zhang, X.3    Shah, G.4    Chien, J.S.5    Jacobsen, S.E.6
  • 23
    • 0035093830 scopus 로고    scopus 로고
    • Deficiency of methyl-CpG binding protein-2 in CNS neurons results in a Rett-like phenotype in mice
    • DOI 10.1038/85906
    • Chen, R.Z., Akbarian, S., Tudor, M. and Jaenisch, R. (2001) Deficiency of methyl-CpG binding protein-2 in CNS neurons results in a Rett-like phenotype in mice. Nat. Genet. 27: 327-331. (Pubitemid 32201857)
    • (2001) Nature Genetics , vol.27 , Issue.3 , pp. 327-331
    • Chen, R.Z.1    Akbarian, S.2    Tudor, M.3    Jaenisch, R.4
  • 24
    • 33748323138 scopus 로고    scopus 로고
    • Epigenetic regulation of the rice retrotransposon Tos17
    • DOI 10.1007/s00438-006-0141-9
    • Cheng, C., Daigen, M. and Hirochika, H. (2006) Epigenetic regulation of the rice retrotransposon Tos17. Mol. Genet. Genomics 276: 378-390. (Pubitemid 44328126)
    • (2006) Molecular Genetics and Genomics , vol.276 , Issue.4 , pp. 378-390
    • Cheng, C.1    Daigen, M.2    Hirochika, H.3
  • 25
    • 0037067658 scopus 로고    scopus 로고
    • DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in Arabidopsis
    • DOI 10.1016/S0092-8674(02)00807-3
    • Choi, Y.H., Gehring, M., Johnson, L., Hannon, M., Harada, J.J., Goldberg, R.B. et al. (2002) DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in Arabidopsis. Cell 110: 33-42. (Pubitemid 34874604)
    • (2002) Cell , vol.110 , Issue.1 , pp. 33-42
    • Choi, Y.1    Gehring, M.2    Johnson, L.3    Hannon, M.4    Harada, J.J.5    Goldberg, R.B.6    Jacobsen, S.E.7    Fischer, R.L.8
  • 26
    • 0023284964 scopus 로고
    • Inactivation of the maize transposable element Activator (Ac) is associated with its DNA modification
    • Chomet, P.S., Wessler, S. and Dellaporta, S.L. (1987) Inactivation of the maize transposable element Activator (Ac) is associated with its DNA modification. EMBO J. 6: 295-302.
    • (1987) EMBO J. , vol.6 , pp. 295-302
    • Chomet, P.S.1    Wessler, S.2    Dellaporta, S.L.3
  • 27
    • 44449140370 scopus 로고    scopus 로고
    • Methyl-CpG binding proteins: Specialized transcriptional repressors or structural components of chromatin?
    • Clouaire, T. and Stancheva, I. (2008) Methyl-CpG binding proteins: specialized transcriptional repressors or structural components of chromatin? Cell. Mol. Life Sci. 65: 1509-1522.
    • (2008) Cell. Mol. Life Sci. , vol.65 , pp. 1509-1522
    • Clouaire, T.1    Stancheva, I.2
  • 29
    • 70349318211 scopus 로고    scopus 로고
    • The impact of retrotransposons on human genome evolution
    • Cordaux, R. and Batzer, M.A. (2009) The impact of retrotransposons on human genome evolution. Nat. Rev. Genet. 10: 691-703.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 691-703
    • Cordaux, R.1    Batzer, M.A.2
  • 30
    • 79959937861 scopus 로고    scopus 로고
    • Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair
    • Cortellino, S., Xu, J.F., Sannai, M., Moore, R., Caretti, E., Cigliano, A. et al. (2011) Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair. Cell 146: 67-79.
    • (2011) Cell , vol.146 , pp. 67-79
    • Cortellino, S.1    Xu, J.F.2    Sannai, M.3    Moore, R.4    Caretti, E.5    Cigliano, A.6
  • 31
    • 0036845765 scopus 로고    scopus 로고
    • Inducible DNA demethylation mediated by the maize Suppressor-mutator transposon-encoded TnpA protein
    • DOI 10.1105/tpc.006163
    • Cui, H. and Fedoroff, N.V. (2002) Inducible DNA demethylation mediated by the maize Suppressor-mutator transposon-encoded TnpA protein. Plant Cell 14: 2883-2899. (Pubitemid 35326310)
    • (2002) Plant Cell , vol.14 , Issue.11 , pp. 2883-2899
    • Cui, H.1    Fedoroff, N.V.2
  • 33
    • 78649485519 scopus 로고    scopus 로고
    • Involvement of a Jumonji-C domain-containing histone demethylase in DRM2-mediated maintenance of DNA methylation
    • Deleris, A., Greenberg, M.V., Ausin, I., Law, R.W., Moissiard, G., Schubert, D. et al. (2010) Involvement of a Jumonji-C domain-containing histone demethylase in DRM2-mediated maintenance of DNA methylation. EMBO Rep. 11: 950-955.
    • (2010) EMBO Rep. , vol.11 , pp. 950-955
    • Deleris, A.1    Greenberg, M.V.2    Ausin, I.3    Law, R.W.4    Moissiard, G.5    Schubert, D.6
  • 34
    • 34247630796 scopus 로고    scopus 로고
    • SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice
    • DOI 10.1105/tpc.106.048124
    • Ding, Y., Wang, X., Su, L., Zhai, J., Cao, S., Zhang, D.F. et al. (2007) SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice. Plant Cell 19: 9-22. (Pubitemid 46852697)
    • (2007) Plant Cell , vol.19 , Issue.1 , pp. 9-22
    • Ding, Y.1    Wang, X.2    Su, L.3    Zhai, J.4    Cao, S.5    Zhang, D.6    Liu, C.7    Bi, Y.8    Qian, Q.9    Cheng, Z.10    Chu, C.11    Cao, X.12
  • 35
    • 33745454548 scopus 로고    scopus 로고
    • Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase
    • DOI 10.1105/tpc.106.041400
    • Ebbs, M.L. and Bender, J. (2006) Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase. Plant Cell 18: 1166-1176. (Pubitemid 43956123)
    • (2006) Plant Cell , vol.18 , Issue.5 , pp. 1166-1176
    • Ebbs, M.L.1    Bender, J.2
  • 37
    • 0025103072 scopus 로고
    • High-frequency P element loss in Drosophila is homolog dependent
    • Engels, W.R., Johnson-Schlitz, D.M., Eggleston, W.B. and Sved, J. (1990) High-frequency P element loss in Drosophila is homolog dependent. Cell 62: 515-525.
    • (1990) Cell , vol.62 , pp. 515-525
    • Engels, W.R.1    Johnson-Schlitz, D.M.2    Eggleston, W.B.3    Sved, J.4
  • 38
    • 79958737509 scopus 로고    scopus 로고
    • Iwr1 protein is important for preinitiation complex formation by all three nuclear RNA polymerases in Saccharomyces cerevisiae
    • Esberg, A., Moqtaderi, Z., Fan, X., Lu, J., Struhl, K. and Bystrom, A. (2011) Iwr1 protein is important for preinitiation complex formation by all three nuclear RNA polymerases in Saccharomyces cerevisiae. PLoS One 6: e20829.
    • (2011) PLoS One , vol.6
    • Esberg, A.1    Moqtaderi, Z.2    Fan, X.3    Lu, J.4    Struhl, K.5    Bystrom, A.6
  • 39
    • 0024979279 scopus 로고
    • About maize transposable elements and development
    • Fedoroff, N.V. (1989) About maize transposable elements and development. Cell 56: 181-191.
    • (1989) Cell , vol.56 , pp. 181-191
    • Fedoroff, N.V.1
  • 40
    • 0029278835 scopus 로고
    • Epigenetic regulation of the maize Spm transposon
    • Fedoroff, N., Schläppi, M. and Raina, R. (1995) Epigenetic regulation of the maize Spm transposon. Bioessays 17: 291-297.
    • (1995) Bioessays , vol.17 , pp. 291-297
    • Fedoroff, N.1    Schläppi, M.2    Raina, R.3
  • 42
    • 3042569778 scopus 로고    scopus 로고
    • DNA methylation is independent of RNA interference in Neurospora
    • DOI 10.1126/science.1099709
    • Freitag, M., Lee, D.W., Kothe, G.O., Pratt, R.J., Aramayo, R. and Selker, E.U. (2004) DNA methylation is independent of RNA interference in Neurospora. Science 304: 1939. (Pubitemid 38822180)
    • (2004) Science , vol.304 , Issue.5679 , pp. 1939
    • Freitag, M.1    Lee, D.W.2    Kothe, G.O.3    Pratt, R.J.4    Aramayo, R.5    Selker, E.U.6
  • 44
    • 0037591867 scopus 로고    scopus 로고
    • Methyl-CpG binding domain 1 (MBD1) interacts with the Suv39h1-HP1 heterochromatic complex for DNA methylation-based transcriptional repression
    • DOI 10.1074/jbc.M302283200
    • Fujita, N., Watanabe, S., Ichimura, T., Tsuruzoe, S., Shinkai, Y., Tachibana, M. et al. (2003) Methyl-CpG binding domain 1 (MBD1) interacts with the Suv39h1-HP1 heterochromatic complex for DNA methylation-based transcriptional repression. J. Biol. Chem. 278: 24132-24138. (Pubitemid 36830249)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.26 , pp. 24132-24138
    • Fujita, N.1    Watanabe, S.2    Ichimura, T.3    Tsuruzoe, S.4    Shinkai, Y.5    Tachibana, M.6    Chiba, T.7    Nakao, M.8
  • 45
    • 0038412822 scopus 로고    scopus 로고
    • The DNA methyltransferases associate with HP1 and the SUV39H1 histone methyltransferase
    • DOI 10.1093/nar/gkg332
    • Fuks, F., Hurd, P.J., Deplus, R. and Kouzarides, T. (2003a) The DNA methyltransferases associate with HP1 and the SUV39H1 histone methyltransferase. Nucleic Acids Res. 31: 2305-2312. (Pubitemid 37442098)
    • (2003) Nucleic Acids Research , vol.31 , Issue.9 , pp. 2305-2312
    • Fuks, F.1    Hurd, P.J.2    Deplus, R.3    Kouzarides, T.4
  • 46
    • 0037423186 scopus 로고    scopus 로고
    • The methyl-CpG-binding protein MeCP2 links DNA methylation to histone methylation
    • DOI 10.1074/jbc.M210256200
    • Fuks, F., Hurd, P.J., Wolf, D., Nan, X.S., Bird, A.P. and Kouzarides, T. (2003b) The methyl-CpG-binding protein MeCP2 links DNA methylation to histone methylation. J. Biol. Chem. 278: 4035-4040. (Pubitemid 36801137)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.6 , pp. 4035-4040
    • Fuks, F.1    Hurd, P.J.2    Wolf, D.3    Nan, X.4    Bird, A.P.5    Kouzarides, T.6
  • 47
    • 77952090735 scopus 로고    scopus 로고
    • An RNA polymerase II-and AGO4-associated protein acts in RNA-directed DNA methylation
    • Gao, Z., Liu, H.L., Daxinger, L., Pontes, O., He, X., Qian, W. et al. (2010) An RNA polymerase II-and AGO4-associated protein acts in RNA-directed DNA methylation. Nature 465: 106-109.
    • (2010) Nature , vol.465 , pp. 106-109
    • Gao, Z.1    Liu, H.L.2    Daxinger, L.3    Pontes, O.4    He, X.5    Qian, W.6
  • 48
    • 32044470027 scopus 로고    scopus 로고
    • DEMETER DNA glycosylase establishes MEDEA polycomb gene self-imprinting by allele-specific demethylation
    • DOI 10.1016/j.cell.2005.12.034, PII S0092867406000687
    • Gehring, M., Huh, J.H., Hsieh, T.F., Penterman, J., Choi, Y., Harada, J.J. et al. (2006) DEMETER DNA glycosylase establishes MEDEA polycomb gene self-imprinting by allele-specific demethylation. Cell 124: 495-506. (Pubitemid 43199436)
    • (2006) Cell , vol.124 , Issue.3 , pp. 495-506
    • Gehring, M.1    Huh, J.H.2    Hsieh, T.-F.3    Penterman, J.4    Choi, Y.5    Harada, J.J.6    Goldberg, R.B.7    Fischer, R.L.8
  • 49
    • 0037074009 scopus 로고    scopus 로고
    • ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase
    • DOI 10.1016/S0092-8674(02)01133-9
    • Gong, Z.H., Morales-Ruiz, T., Ariza, R.R., Roldan-Arjona, T., David, L. and Zhu, J.K. (2002) ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase. Cell 111: 803-814. (Pubitemid 36106402)
    • (2002) Cell , vol.111 , Issue.6 , pp. 803-814
    • Gong, Z.1    Morales-Ruiz, T.2    Ariza, R.R.3    Roldan-Arjona, T.4    David, L.5    Zhu, J.-K.6
  • 50
    • 33845755946 scopus 로고    scopus 로고
    • Heterochromatin revisited
    • DOI 10.1038/nrg2008, PII NRG2008
    • Grewal, S.I. and Jia, S. (2007) Heterochromatin revisited. Nat. Rev. Genet. 8: 35-46. (Pubitemid 46006048)
    • (2007) Nature Reviews Genetics , vol.8 , Issue.1 , pp. 35-46
    • Grewal, S.I.S.1    Jia, S.2
  • 51
    • 79955538247 scopus 로고    scopus 로고
    • Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain
    • Guo, J.U., Su, Y.J., Zhong, C., Ming, G.L. and Song, H.J. (2011) Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain. Cell 145: 423-434.
    • (2011) Cell , vol.145 , pp. 423-434
    • Guo, J.U.1    Su, Y.J.2    Zhong, C.3    Ming, G.L.4    Song, H.J.5
  • 52
    • 0035094767 scopus 로고    scopus 로고
    • A mouse Mecp2-null mutation causes neurological symptoms that mimic rett syndrome
    • DOI 10.1038/85899
    • Guy, J., Hhendrich, B., Holmes, M., Martin, J.E. and Bird, A. (2001) A mouse Mecp2-null mutation causes neurological symptoms that mimic Rett syndrome. Nat. Genet. 27: 322-326. (Pubitemid 32201856)
    • (2001) Nature Genetics , vol.27 , Issue.3 , pp. 322-326
    • Guy, J.1    Hendrich, B.2    Holmes, M.3    Martin, J.E.4    Bird, A.5
  • 53
    • 79960716754 scopus 로고    scopus 로고
    • Multisubunit RNA polymerases IV and V: Purveyors of non-coding RNA for plant gene silencing
    • Haag, J.R. and Pikaard, C.S. (2011) Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing. Nat. Rev. Mol. Cell Biol. 12: 483-492.
    • (2011) Nat. Rev. Mol. Cell Biol. , vol.12 , pp. 483-492
    • Haag, J.R.1    Pikaard, C.S.2
  • 54
    • 33751510617 scopus 로고    scopus 로고
    • Epigenetic regulation of transcription in intermediate heterochromatin
    • DOI 10.1038/sj.embor.7400835, PII 7400835
    • Habu, Y., Mathieu, O., Tariq, M., Probst, A.V., Smathajitt, C., Zhu, T. et al. (2006) Epigenetic regulation of transcription in intermediate heterochromatin. EMBO Rep. 7: 1279-1284. (Pubitemid 44835098)
    • (2006) EMBO Reports , vol.7 , Issue.12 , pp. 1279-1284
    • Habu, Y.1    Mathieu, O.2    Tariq, M.3    Probst, A.V.4    Smathajitt, C.5    Zhu, T.6    Paszkowski, J.7
  • 55
    • 0034713275 scopus 로고    scopus 로고
    • CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus
    • DOI 10.1038/35013106
    • Hark, A.T., Schoenherr, C.J., Katz, D.J., Ingram, R.S., Levorse, J.M. and Tilghman, S.M. (2000) CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus. Nature 405: 486-489. (Pubitemid 30367428)
    • (2000) Nature , vol.405 , Issue.6785 , pp. 486-489
    • Hark, A.T.1    Schoenherr, C.J.2    Katz, D.J.3    Ingram, R.S.4    Levorse, J.M.5    Tilghman, S.M.6
  • 56
    • 80053333880 scopus 로고    scopus 로고
    • Examination of transpositional activity of nDart1 at different stages of rice development
    • Hayashi-Tsugane, M., Maekawa, M., Kobayashi, H., Iida, S. and Tsugane, K. (2011) Examination of transpositional activity of nDart1 at different stages of rice development. Genes Genet. Syst. 86: 215-219.
    • (2011) Genes Genet. Syst. , vol.86 , pp. 215-219
    • Hayashi-Tsugane, M.1    Maekawa, M.2    Kobayashi, H.3    Iida, S.4    Tsugane, K.5
  • 57
    • 4043067769 scopus 로고    scopus 로고
    • The diversity of LTR retrotransposons
    • Havecker, E., Gao, X. and Voytas, D. (2004) The diversity of LTR retrotransposons. Genome Biol. 5: 225.
    • (2004) Genome Biol. , vol.5 , pp. 225
    • Havecker, E.1    Gao, X.2    Voytas, D.3
  • 58
    • 79952535972 scopus 로고    scopus 로고
    • Regulation and function of DNA methylation in plants and animals
    • He, X.J., Chen, T. and Zhu, J.K. (2011) Regulation and function of DNA methylation in plants and animals. Cell Res. 21: 442-465.
    • (2011) Cell Res. , vol.21 , pp. 442-465
    • He, X.J.1    Chen, T.2    Zhu, J.K.3
  • 59
    • 72549089751 scopus 로고    scopus 로고
    • A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development
    • He, X.J., Hsu, Y.F., Zhu, S., Liu, H.L., Pontes, O., Zhu, J. et al. (2009b) A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development. Genes Dev. 23: 2717-2722.
    • (2009) Genes Dev. , vol.23 , pp. 2717-2722
    • He, X.J.1    Hsu, Y.F.2    Zhu, S.3    Liu, H.L.4    Pontes, O.5    Zhu, J.6
  • 60
    • 65249093731 scopus 로고    scopus 로고
    • An effector of RNA-directed DNA methylation in Arabidopsis is an ARGONAUTE 4-and RNA-binding protein
    • He, X.J., Hsu, Y.F., Zhu, S., Wierzbicki, A.T., Pontes, O., Pikaard, C.S. et al. (2009a) An effector of RNA-directed DNA methylation in Arabidopsis is an ARGONAUTE 4-and RNA-binding protein. Cell 137: 498-508.
    • (2009) Cell , vol.137 , pp. 498-508
    • He, X.J.1    Hsu, Y.F.2    Zhu, S.3    Wierzbicki, A.T.4    Pontes, O.5    Pikaard, C.S.6
  • 61
    • 80052495940 scopus 로고    scopus 로고
    • Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA
    • He, Y.-F., Li, B.-Z., Li, Z., Liu, P., Wang, Y., Tang, Y. et al. (2011) Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science 333: 1303-1307.
    • (2011) Science , vol.333 , pp. 1303-1307
    • He, Y.-F.1    Li, B.-Z.2    Li, Z.3    Liu, P.4    Wang, Y.5    Tang, Y.6
  • 62
    • 45349108094 scopus 로고    scopus 로고
    • Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading
    • DOI 10.1101/gad.1667808
    • Henderson, I.R. and Jacobsen, S.E. (2008) Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading. Genes Dev. 22: 1597-1606. (Pubitemid 351846840)
    • (2008) Genes and Development , vol.22 , Issue.12 , pp. 1597-1606
    • Henderson, I.R.1    Jacobsen, S.E.2
  • 63
    • 78449231939 scopus 로고    scopus 로고
    • The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana
    • Henderson, I.R., Deleris, A., Wong, W., Zhong, X., Chin, H.G., Horwitz, G.A. et al. (2010) The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana. PLoS Genet. 6: e1001182.
    • (2010) PLoS Genet. , vol.6
    • Henderson, I.R.1    Deleris, A.2    Wong, W.3    Zhong, X.4    Chin, H.G.5    Horwitz, G.A.6
  • 64
    • 0031792779 scopus 로고    scopus 로고
    • Identification and characterization of a family of mammalian methyl-CpG binding proteins
    • Hendrich, B. and Bird, A. (1998) Identification and characterization of a family of mammalian methyl-CpG binding proteins. Mol. Cell. Biol. 18: 6538-6547. (Pubitemid 28500543)
    • (1998) Molecular and Cellular Biology , vol.18 , Issue.11 , pp. 6538-6547
    • Hendrich, B.1    Bird, A.2
  • 65
    • 0035868824 scopus 로고    scopus 로고
    • Closely related proteins MBD2 and MBD3 play distinctive but interacting roles in mouse development
    • DOI 10.1101/gad.194101
    • Hendrich, B., Guy, J., Ramsahoye, B., Wilson, V.A. and Bird, A. (2001) Closely related proteins MBD2 and MBD3 play distinctive but interacting roles in mouse development. Genes Dev. 15: 710-723. (Pubitemid 32244900)
    • (2001) Genes and Development , vol.15 , Issue.6 , pp. 710-723
    • Hendrich, B.1    Guy, J.2    Ramsahoye, B.3    Wilson, V.A.4    Bird, A.5
  • 66
    • 78650966670 scopus 로고    scopus 로고
    • Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA
    • Heo, J.B. and Sung, S. (2011) Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA. Science 331: 76-79.
    • (2011) Science , vol.331 , pp. 76-79
    • Heo, J.B.1    Sung, S.2
  • 67
    • 14844295120 scopus 로고    scopus 로고
    • RNA polymerase IV directs silencing of endogenous DNA
    • DOI 10.1126/science.1106910
    • Herr, A.J., Jensen, M.B., Dalmay, T. and Baulcombe, D.C. (2005) RNA polymerase IV directs silencing of endogenous DNA. Science 308: 118-120. (Pubitemid 40471011)
    • (2005) Science , vol.308 , Issue.5718 , pp. 118-120
    • Herr, A.J.1    Jensen, M.B.2    Dalmay, T.3    Baulcombe, D.C.4
  • 69
    • 58149271019 scopus 로고    scopus 로고
    • An atypical RNA polymerase involved in RNA silencing shares small subunits with RNA polymerase II
    • Huang, L., Jones, A.M., Searle, I., Patel, K., Vogler, H., Hubner, N.C. et al. (2009) An atypical RNA polymerase involved in RNA silencing shares small subunits with RNA polymerase II. Nat. Struct. Mol. Biol. 16: 91-93.
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 91-93
    • Huang, L.1    Jones, A.M.2    Searle, I.3    Patel, K.4    Vogler, H.5    Hubner, N.C.6
  • 70
    • 0024673303 scopus 로고
    • CpG methylation of the cAMP-responsive enhancer/promoter sequence TGACGTCA abolishes specific factor binding as well as transcriptional activation
    • Iguchi-Ariga, S.M.M. and Schaffner, W. (1989) CpG methylation of the cAMP-responsive enhancer/promoter sequence TGACGTCA abolishes specific factor binding as well as transcriptional activation. Genes Dev. 3: 612-619.
    • (1989) Genes Dev. , vol.3 , pp. 612-619
    • Iguchi-Ariga, S.M.M.1    Schaffner, W.2
  • 71
    • 77958510636 scopus 로고    scopus 로고
    • Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome
    • Inagaki, S., Miura-Kamio, A., Nakamura, Y., Lu, F., Cui, X., Cao, X. et al. (2010) Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome. EMBO J. 29: 3496-3506.
    • (2010) EMBO J. , vol.29 , pp. 3496-3506
    • Inagaki, S.1    Miura-Kamio, A.2    Nakamura, Y.3    Lu, F.4    Cui, X.5    Cao, X.6
  • 72
    • 0026198118 scopus 로고
    • CpG methylation inhibits binding of several sequence-specific DNA-binding proteins from pea, wheat, soybean and cauliflower
    • Inamdar, N.M., Ehrlich, K.C. and Ehrlich, M. (1991) CpG methylation inhibits binding of several sequence-specific DNA-binding proteins from pea, wheat, soybean and cauliflower. Plant Mol. Biol. 17: 111-123.
    • (1991) Plant Mol. Biol. , vol.17 , pp. 111-123
    • Inamdar, N.M.1    Ehrlich, K.C.2    Ehrlich, M.3
  • 73
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • International Rice Genome Sequencing Project
    • International Rice Genome Sequencing Project. (2005) The map-based sequence of the rice genome. Nature 436: 793-800.
    • (2005) Nature , vol.436 , pp. 793-800
  • 74
    • 0347683339 scopus 로고    scopus 로고
    • Methylated DNA-Binding Proteins from Arabidopsis
    • DOI 10.1104/pp.103.026708
    • Ito, M., Koike, A., Koizumi, N. and Sano, H. (2003) Methylated DNA-binding proteins from Arabidopsis. Plant Physiol. 133: 1747-1754. (Pubitemid 38047305)
    • (2003) Plant Physiology , vol.133 , Issue.4 , pp. 1747-1754
    • Ito, M.1    Koike, A.2    Koizumi, N.3    Sano, H.4
  • 75
    • 80052461558 scopus 로고    scopus 로고
    • Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
    • Ito, S., Shen, L., Dai, Q., Wu, S.C., Collins, L.B., Swenberg, J.A. et al. (2011) Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science 333: 1300-1303.
    • (2011) Science , vol.333 , pp. 1300-1303
    • Ito, S.1    Shen, L.2    Dai, Q.3    Wu, S.C.4    Collins, L.B.5    Swenberg, J.A.6
  • 78
    • 0037041422 scopus 로고    scopus 로고
    • Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase
    • DOI 10.1038/nature731
    • Jackson, J.P., Lindroth, A.M., Cao, X. and Jacobsen, S.E. (2002) Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature 416: 556-560. (Pubitemid 34288860)
    • (2002) Nature , vol.416 , Issue.6880 , pp. 556-560
    • Jackson, J.P.1    Lindroth, A.M.2    Cao, X.3    Jacobsen, S.E.4
  • 79
    • 34548603504 scopus 로고    scopus 로고
    • Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation
    • DOI 10.1038/nature06146, PII NATURE06146
    • Jia, D., Jurkowska, R.Z., Zhang, X., Jeltsch, A. and Cheng, X. (2007) Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation. Nature 449: 248-251. (Pubitemid 47402375)
    • (2007) Nature , vol.449 , Issue.7159 , pp. 248-251
    • Jia, D.1    Jurkowska, R.Z.2    Zhang, X.3    Jeltsch, A.4    Cheng, X.5
  • 80
    • 37249022362 scopus 로고    scopus 로고
    • Arabidopsis relatives of the human lysine-specific demethylase1 repress the expression of FWA and FLOWERING LOCUS C and thus promote the floral transition
    • DOI 10.1105/tpc.107.052373
    • Jiang, D., Yang, W., He, Y. and Amasino, R.M. (2007) Arabidopsis relatives of the human lysine specific demethylase1 repress the expression of FWA and FLOWERING LOCUS C and thus promote the floral transition. Plant Cell 19: 2975-2987. (Pubitemid 350276706)
    • (2007) Plant Cell , vol.19 , Issue.10 , pp. 2975-2987
    • Jiang, D.1    Yang, W.2    He, Y.3    Amasino, R.M.4
  • 81
    • 33846931283 scopus 로고    scopus 로고
    • The SRA methyl-cytosine-binding domain links DNA and histone methylation
    • DOI 10.1016/j.cub.2007.01.009, PII S096098220700810X
    • Johnson, L.M., Bostick, M., Zhang, X.Y., Kraft, E., Henderson, I., Callis, J. et al. (2007) The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr. Biol. 17: 379-384. (Pubitemid 46241885)
    • (2007) Current Biology , vol.17 , Issue.4 , pp. 379-384
    • Johnson, L.M.1    Bostick, M.2    Zhang, X.3    Kraft, E.4    Henderson, I.5    Callis, J.6    Jacobsen, S.E.7
  • 84
    • 0028934977 scopus 로고
    • Mechanisms of DNA demethylation in chicken embryos-purification and properties of a 5-methylcytosine-DNA glycosylase
    • Jost, J.P., Siegmann, M., Sun, L.J. and Leung, R. (1995) Mechanisms of DNA demethylation in chicken embryos-purification and properties of a 5-methylcytosine-DNA glycosylase. J. Biol. Chem. 270: 9734-9739.
    • (1995) J. Biol. Chem. , vol.270 , pp. 9734-9739
    • Jost, J.P.1    Siegmann, M.2    Sun, L.J.3    Leung, R.4
  • 85
    • 78649513916 scopus 로고    scopus 로고
    • Mammalian methyl-binding proteins: What might they do?
    • Joulie, M., Miotto, B. and Defossez, P.A. (2010) Mammalian methyl-binding proteins: what might they do? Bioessays 32: 1025-1032.
    • (2010) Bioessays , vol.32 , pp. 1025-1032
    • Joulie, M.1    Miotto, B.2    Defossez, P.A.3
  • 86
    • 50249117653 scopus 로고    scopus 로고
    • Retinoblastoma and its binding partner MSI1 control imprinting in Arabidopsis
    • Jullien, P.E., Mosquna, A., Ingouff, M., Sakata, T., Ohad, N. and Berger, F. (2008) Retinoblastoma and its binding partner MSI1 control imprinting in Arabidopsis. PLoS Biol. 6: e194.
    • (2008) PLoS Biol. , vol.6
    • Jullien, P.E.1    Mosquna, A.2    Ingouff, M.3    Sakata, T.4    Ohad, N.5    Berger, F.6
  • 88
    • 42649089072 scopus 로고    scopus 로고
    • A structural-maintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation
    • DOI 10.1038/ng.119, PII NG119
    • Kanno, T., Bucher, E., Daxinger, L., Huettel, B., Bohmdorfer, G., Gregor, W. et al. (2008) A structural-maintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation. Nat. Genet. 40: 670-675. (Pubitemid 351601208)
    • (2008) Nature Genetics , vol.40 , Issue.5 , pp. 670-675
    • Kanno, T.1    Bucher, E.2    Daxinger, L.3    Huettel, B.4    Bohmdorfer, G.5    Gregor, W.6    Kreil, D.P.7    Matzke, M.8    Matzke, A.J.M.9
  • 89
    • 74149084294 scopus 로고    scopus 로고
    • RNA-directed DNA methylation and plant development require an IWR1-type transcription factor
    • Kanno, T., Bucher, E., Daxinger, L., Huettel, B., Kreil, D.P., Breinig, F. et al. (2010) RNA-directed DNA methylation and plant development require an IWR1-type transcription factor. EMBO Rep. 11: 65-71.
    • (2010) EMBO Rep. , vol.11 , pp. 65-71
    • Kanno, T.1    Bucher, E.2    Daxinger, L.3    Huettel, B.4    Kreil, D.P.5    Breinig, F.6
  • 90
    • 79961210876 scopus 로고
    • SiRNA-mediated chromatin maintenance and its function in Arabidopsis thaliana
    • Kanno, T. and Habu, Y. (2011) siRNA-mediated chromatin maintenance and its function in Arabidopsis thaliana. Biochim. Biophys. Acta 1809: 444-451.
    • (1809) Biochim. Biophys. Acta , pp. 444-451
    • Kanno, T.1    Habu, Y.2
  • 92
    • 2342505910 scopus 로고    scopus 로고
    • Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation
    • DOI 10.1016/j.cub.2004.04.037, PII S0960982204002672
    • Kanno, T., Mette, M.F., Kreil, D.P., Aufsatz, W., Matzke, M. and Matzke, A.J. (2004) Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation. Curr. Biol. 14: 801-805. (Pubitemid 38583716)
    • (2004) Current Biology , vol.14 , Issue.9 , pp. 801-805
    • Kanno, T.1    Mette, M.F.2    Kreil, D.P.3    Aufsatz, W.4    Matzke, M.5    Matzke, A.J.M.6
  • 93
    • 37849038263 scopus 로고    scopus 로고
    • ICBP90, a novel methyl K9 H3 binding protein linking protein ubiquitination with heterochromatin formation
    • Karagianni, P., Amazit, L., Qin, J. and Wong, J. (2008) ICBP90, a novel methyl K9 H3 binding protein linking protein ubiquitination with heterochromatin formation. Mol. Cell. Biol. 28: 705-717.
    • (2008) Mol. Cell. Biol. , vol.28 , pp. 705-717
    • Karagianni, P.1    Amazit, L.2    Qin, J.3    Wong, J.4
  • 94
    • 8544225783 scopus 로고    scopus 로고
    • Epigenetic control of CACTA transposon mobility in Arabidopsis thaliana
    • DOI 10.1534/genetics.104.029637
    • Kato, M., Takashima, K. and Kakutani, T. (2004) Epigenetic control of C ACTA transposon mobility in Arabidopsis thaliana. Genetics 168: 961-969. (Pubitemid 39491471)
    • (2004) Genetics , vol.168 , Issue.2 , pp. 961-969
    • Kato, M.1    Takashima, K.2    Kakutani, T.3
  • 95
    • 0038136913 scopus 로고    scopus 로고
    • Methyl-CpG-binding protein, MeCP2, is a target molecule for maintenance DNA methyltransferase, Dnmt1
    • DOI 10.1074/jbc.M209923200
    • Kimura, H. and Shiota, K. (2003) Methyl-CpG-binding protein, MeCP2, is a target molecule for maintenance DNA methyltransferase, Dnmt1. J. Biol. Chem. 278: 4806-4812. (Pubitemid 36800984)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.7 , pp. 4806-4812
    • Kimura, H.1    Shiota, K.2
  • 96
  • 97
    • 33845621109 scopus 로고    scopus 로고
    • Control of FWA gene silencing in Arabidopsis thaliana by SINE-related direct repeats
    • DOI 10.1111/j.1365-313X.2006.02936.x
    • Kinoshita, Y., Saze, H., Kinoshita, T., Miura, A., Soppe, W.J., Koornneef, M. et al. (2007) Control of FWA gene silencing in Arabidopsis thaliana by SINE-related direct repeats. Plant J. 49: 38-45. (Pubitemid 44952696)
    • (2007) Plant Journal , vol.49 , Issue.1 , pp. 38-45
    • Kinoshita, Y.1    Saze, H.2    Kinoshita, T.3    Miura, A.4    Soppe, W.J.J.5    Koornneef, M.6    Kakutani, T.7
  • 98
    • 0043030233 scopus 로고    scopus 로고
    • Two-step regulation and continuous retrotransposition of the rice LINE-type retrotransposon Karma
    • DOI 10.1105/tpc.011809
    • Komatsu, M., Shimamoto, K. and Kyozuka, J. (2003) Two-step regulation and continuous retrotransposition of the rice LINE-type retrotransposon Karma. Plant Cell 15: 1934-1944. (Pubitemid 37078345)
    • (2003) Plant Cell , vol.15 , Issue.8 , pp. 1934-1944
    • Komatsu, M.1    Shimamoto, K.2    Kyozuka, J.3
  • 99
    • 18944404300 scopus 로고    scopus 로고
    • INK4a and hMLH1 genes
    • DOI 10.1128/MCB.25.11.4388-4396.2005
    • Kondo, E., Gu, Z.D., Horii, A. and Fukushige, S. (2005) The thymine DNA glycosylase MBD4 represses transcription and is associated with methylated p16INK4a and hMLH1 genes. Mol. Cell. Biol. 25: 4388-4396. (Pubitemid 40705746)
    • (2005) Molecular and Cellular Biology , vol.25 , Issue.11 , pp. 4388-4396
    • Kondo, E.1    Gu, Z.2    Horii, A.3    Fukushige, S.4
  • 100
    • 0025886455 scopus 로고
    • A genetic and physiological analysis of late flowering mutants in Arabidopsis thaliana
    • Koornneef, M., Hanhart, C.J. and van der Veen, J.H. (1991) A genetic and physiological analysis of late flowering mutants in Arabidopsis thaliana. Mol. Genet. Genomics 229: 57-66.
    • (1991) Mol. Genet. Genomics , vol.229 , pp. 57-66
    • Koornneef, M.1    Hanhart, C.J.2    Van Der Veen, J.H.3
  • 101
    • 66149123748 scopus 로고    scopus 로고
    • The nuclear DNA base 5-hydroxymethylcytosine is present in purkinje neurons and the brain
    • Kriaucionis, S. and Heintz, N. (2009) The nuclear DNA base 5-hydroxymethylcytosine is present in purkinje neurons and the brain. Science 324: 929-930.
    • (2009) Science , vol.324 , pp. 929-930
    • Kriaucionis, S.1    Heintz, N.2
  • 102
    • 80053065324 scopus 로고    scopus 로고
    • A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice
    • La, H., Ding, B., Mishra, G.P., Zhou, B., Yang, H., Bellizzi, M. et al. (2011) A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice. Proc. Natl Acad. Sci. USA 108: 15498-15503.
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 15498-15503
    • La, H.1    Ding, B.2    Mishra, G.P.3    Zhou, B.4    Yang, H.5    Bellizzi, M.6
  • 103
    • 58849120615 scopus 로고    scopus 로고
    • PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit
    • Lahmy, S., Pontier, D., Cavel, E., Vega, D., El-Shami, M., Kanno, T. et al. (2009) PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit. Proc. Natl Acad. Sci. USA 106: 941-946.
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 941-946
    • Lahmy, S.1    Pontier, D.2    Cavel, E.3    Vega, D.4    El-Shami, M.5    Kanno, T.6
  • 104
    • 77249170184 scopus 로고    scopus 로고
    • Establishing, maintaining and modifying DNA methylation patterns in plants and animals
    • Law, J.A. and Jacobsen, S.E. (2010) Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet. 11: 204-220.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 204-220
    • Law, J.A.1    Jacobsen, S.E.2
  • 105
    • 77953129746 scopus 로고    scopus 로고
    • A protein complex required for polymerase v transcripts and RNA-directed DNA methylation in Arabidopsis
    • Law, J.A., Ausin, I., Johnson, L.M., Vashisht, A.A., Zhu, J.K., Wohlschlegel, J.A. et al. (2010) A protein complex required for polymerase V transcripts and RNA-directed DNA methylation in Arabidopsis. Curr. Biol. 20: 951-956.
    • (2010) Curr. Biol. , vol.20 , pp. 951-956
    • Law, J.A.1    Ausin, I.2    Johnson, L.M.3    Vashisht, A.A.4    Zhu, J.K.5    Wohlschlegel, J.A.6
  • 106
    • 79960960568 scopus 로고    scopus 로고
    • SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV
    • Law, J.A., Vashisht, A.A., Wohlschlegel, J.A. and Jacobsen, S.E. (2011) SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. PLoS Genet. 7: e1002195.
    • (2011) PLoS Genet. , vol.7
    • Law, J.A.1    Vashisht, A.A.2    Wohlschlegel, J.A.3    Jacobsen, S.E.4
  • 108
    • 0026747761 scopus 로고
    • Purification, sequence, and cellular-localization of a novel chromosomal protein that binds to methylated DNA
    • Lewis, J.D., Meehan, R.R., Henzel, W.J., Maurerfogy, I., Jeppesen, P., Klein, F. et al. (1992) Purification, sequence, and cellular-localization of a novel chromosomal protein that binds to methylated DNA. Cell 69: 905-914.
    • (1992) Cell , vol.69 , pp. 905-914
    • Lewis, J.D.1    Meehan, R.R.2    Henzel, W.J.3    Maurerfogy, I.4    Jeppesen, P.5    Klein, F.6
  • 109
    • 0026708177 scopus 로고
    • Targeted mutation of the DNA methyltransferase gene results in embryonic lethality
    • Li, E., Bestor, T.H. and Jaenisch, R. (1992) Targeted mutation of the DNA methyltransferase gene results in embryonic lethality. Cell 69: 915-926.
    • (1992) Cell , vol.69 , pp. 915-926
    • Li, E.1    Bestor, T.H.2    Jaenisch, R.3
  • 110
    • 78650637906 scopus 로고    scopus 로고
    • Epigenetic reprogramming during vegetative phase change in maize
    • Li, H., Freeling, M. and Lisch, D. (2010) Epigenetic reprogramming during vegetative phase change in maize. Proc. Natl Acad. Sci. USA 107: 22184-22189.
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 22184-22189
    • Li, H.1    Freeling, M.2    Lisch, D.3
  • 111
    • 80052329915 scopus 로고    scopus 로고
    • DNA methylation and histone modifications regulate de novo shoot regeneration in Arabidopsis by modulating WUSCHEL expression and auxin signaling
    • Li, W., Liu, H., Cheng, Z.J., Su, Y.H., Han, H.N., Zhang, Y. et al. (2011) DNA methylation and histone modifications regulate de novo shoot regeneration in Arabidopsis by modulating WUSCHEL expression and auxin signaling. PLoS Genet. 7: e1002243.
    • (2011) PLoS Genet. , vol.7
    • Li, W.1    Liu, H.2    Cheng, Z.J.3    Su, Y.H.4    Han, H.N.5    Zhang, Y.6
  • 112
  • 114
    • 66449124318 scopus 로고    scopus 로고
    • Epigenetic regulation of transposable elements in plants
    • Lisch, D. (2009) Epigenetic regulation of transposable elements in plants. Annu. Rev. Plant Biol. 60: 43-66.
    • (2009) Annu. Rev. Plant Biol. , vol.60 , pp. 43-66
    • Lisch, D.1
  • 115
  • 116
    • 70450217879 scopus 로고    scopus 로고
    • Human DNA methylomes at base resolution show widespread epigenomic differences
    • Lister, R., Pelizzola, M., Dowen, R.H., Hawkins, R.D., Hon, G., Tonti-Filippini, J. et al. (2009) Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462: 315-322.
    • (2009) Nature , vol.462 , pp. 315-322
    • Lister, R.1    Pelizzola, M.2    Dowen, R.H.3    Hawkins, R.D.4    Hon, G.5    Tonti-Filippini, J.6
  • 117
    • 73649095856 scopus 로고    scopus 로고
    • Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome
    • Liu, S., Yeh, C.T., Ji, T., Ying, K., Wu, H., Tang, H.M. et al. (2009) Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome. PLoS Genet. 5: e1000733.
    • (2009) PLoS Genet. , vol.5
    • Liu, S.1    Yeh, C.T.2    Ji, T.3    Ying, K.4    Wu, H.5    Tang, H.M.6
  • 118
    • 12244271065 scopus 로고    scopus 로고
    • An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation
    • DOI 10.1093/emboj/cdf687
    • Malagnac, F., Bartee, L. and Bender, J. (2002) An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation. EMBO J. 21: 6842-6852. (Pubitemid 36014556)
    • (2002) EMBO Journal , vol.21 , Issue.24 , pp. 6842-6852
    • Malagnac, F.1    Bartee, L.2    Bender, J.3
  • 119
    • 70350504436 scopus 로고    scopus 로고
    • A transposon-induced epigenetic change leads to sex determination in melon
    • Martin, A., Troadec, C., Boualem, A., Rajab, M., Fermandez, R., Morin, H. et al. (2009) A transposon-induced epigenetic change leads to sex determination in melon. Nature 461: 1135-1138.
    • (2009) Nature , vol.461 , pp. 1135-1138
    • Martin, A.1    Troadec, C.2    Boualem, A.3    Rajab, M.4    Fermandez, R.5    Morin, H.6
  • 120
    • 34548299554 scopus 로고    scopus 로고
    • Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
    • DOI 10.1016/j.cell.2007.07.007, PII S009286740700894X
    • Mathieu, O., Reinders, J.,Cáikovski, M., Smathajitt, C. and Paszkowski, J. (2007) Transgenerational stability of the Arabidopsis epigenome is coordinated by CG methylation. Cell 130: 851-862. (Pubitemid 47334929)
    • (2007) Cell , vol.130 , Issue.5 , pp. 851-862
    • Mathieu, O.1    Reinders, J.2    Caikovski, M.3    Smathajitt, C.4    Paszkowski, J.5
  • 122
    • 0001575001 scopus 로고
    • Components of action of the regulators Spm and Ac
    • McClintock, B. (1965) Components of action of the regulators Spm and Ac. Carnegie Inst. Wash. Year Book 64: 527-534.
    • (1965) Carnegie Inst. Wash. Year Book , vol.64 , pp. 527-534
    • McClintock, B.1
  • 125
    • 33947705203 scopus 로고    scopus 로고
    • Which transposable elements are active in the human genome?
    • DOI 10.1016/j.tig.2007.02.006, PII S0168952507000595
    • Mills, R.E., Bennett, E.A., Iskow, R.C. and Devine, S.E. (2007) Which transposable elements are active in the human genome? Trends Genet. 23: 183-191. (Pubitemid 46497510)
    • (2007) Trends in Genetics , vol.23 , Issue.4 , pp. 183-191
    • Mills, R.E.1    Bennett, E.A.2    Iskow, R.C.3    Devine, S.E.4
  • 128
    • 0035837378 scopus 로고    scopus 로고
    • Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis
    • DOI 10.1038/35075612
    • Miura, A., Yonebayashi, S., Watanabe, K., Toyama, T., Shimada, H. and Kakutani, T. (2001) Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis. Nature 411: 212-214. (Pubitemid 32455182)
    • (2001) Nature , vol.411 , Issue.6834 , pp. 212-214
    • Mlura, A.1    Yonebayashi, S.2    Watanabe, K.3    Toyama, T.4    Shimada, H.5    Kakutani, T.6
  • 129
    • 65349171662 scopus 로고    scopus 로고
    • An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites
    • Miura, A., Nakamura, M., Inagaki, S., Kobayashi, A., Saze, H. and Kakutani, T. (2009) An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites. EMBO J. 28: 1078-1086.
    • (2009) EMBO J. , vol.28 , pp. 1078-1086
    • Miura, A.1    Nakamura, M.2    Inagaki, S.3    Kobayashi, A.4    Saze, H.5    Kakutani, T.6
  • 131
    • 56549111129 scopus 로고    scopus 로고
    • The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin
    • Nagano, T., Mitchell, J.A., Sanz, L.A., Pauler, F.M., Ferguson-Smith, A.C., Feil, R. et al. (2008) The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. Science 322: 1717-1720.
    • (2008) Science , vol.322 , pp. 1717-1720
    • Nagano, T.1    Mitchell, J.A.2    Sanz, L.A.3    Pauler, F.M.4    Ferguson-Smith, A.C.5    Feil, R.6
  • 132
    • 70350515004 scopus 로고    scopus 로고
    • Unexpected consequences of a sudden and massive transposon amplification on rice gene expression
    • Naito, K., Zhang, F., Tsukiyama, T., Saito, H., Hancock, C.N., Richardson, A.O. et al. (2009) Unexpected consequences of a sudden and massive transposon amplification on rice gene expression. Nature 461: 1130-1134.
    • (2009) Nature , vol.461 , pp. 1130-1134
    • Naito, K.1    Zhang, F.2    Tsukiyama, T.3    Saito, H.4    Hancock, C.N.5    Richardson, A.O.6
  • 133
    • 0342437491 scopus 로고    scopus 로고
    • MeCP2 is a transcriptional repressor with abundant binding sites in genomic chromatin
    • DOI 10.1016/S0092-8674(00)81887-5
    • Nan, X.S., Campoy, F.J. and Bird, A. (1997) MeCP2 is a transcriptional repressor with abundant binding sites in genomic chromatin. Cell 88: 471-481. (Pubitemid 27154412)
    • (1997) Cell , vol.88 , Issue.4 , pp. 471-481
    • Xinsheng, N.1    Campoy, F.J.2    Bird, A.3
  • 135
    • 0032574977 scopus 로고    scopus 로고
    • Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex
    • DOI 10.1038/30764
    • Nan, X.S., Ng, H.H., Johnson, C.A., Laherty, C.D., Turner, B.M., Eisenman, R.N. et al. (1998) Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex. Nature 393: 386-389. (Pubitemid 28269714)
    • (1998) Nature , vol.393 , Issue.6683 , pp. 386-389
    • Nan, X.1    Ng, H.-H.2    Johnson, C.A.3    Laherty, C.D.4    Turner, B.M.5    Eisenman, R.N.6    Bird, A.7
  • 136
    • 79953189712 scopus 로고    scopus 로고
    • Genetic evidence that DNA methyltransferase DRM2 has a direct catalytic role in RNA-directed DNA methylation in Arabidopsis thaliana
    • Naumann, U., Daxinger, L., Kanno, T., Eun, C., Long, Q., Lorkovic, Z.J. et al. (2011) Genetic evidence that DNA methyltransferase DRM2 has a direct catalytic role in RNA-directed DNA methylation in Arabidopsis thaliana. Genetics 187: 977-979.
    • (2011) Genetics , vol.187 , pp. 977-979
    • Naumann, U.1    Daxinger, L.2    Kanno, T.3    Eun, C.4    Long, Q.5    Lorkovic, Z.J.6
  • 137
    • 0033973587 scopus 로고    scopus 로고
    • Active repression of methylated genes by the chromosomal protein MBD1
    • DOI 10.1128/MCB.20.4.1394-1406.2000
    • Ng, H.H., Jeppesen, P. and Bird, A. (2000) Active repression of methylated genes by the chromosomal protein MBD1. Mol. Cell. Biol. 20: 1394-1406. (Pubitemid 30069259)
    • (2000) Molecular and Cellular Biology , vol.20 , Issue.4 , pp. 1394-1406
    • Ng, H.-H.1    Jeppesen, P.2    Bird, A.3
  • 139
    • 75049083007 scopus 로고    scopus 로고
    • Transduction of RNA-directed DNA methylation signals to repressive histone marks in Arabidopsis thaliana
    • Numa, H., Kim, J.M., Matsui, A., Kurihara, Y., Morosawa, T., Ishida, J. et al. (2010) Transduction of RNA-directed DNA methylation signals to repressive histone marks in Arabidopsis thaliana. EMBO J. 29: 352-362.
    • (2010) EMBO J. , vol.29 , pp. 352-362
    • Numa, H.1    Kim, J.M.2    Matsui, A.3    Kurihara, Y.4    Morosawa, T.5    Ishida, J.6
  • 140
    • 14844302397 scopus 로고    scopus 로고
    • Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation- dependent heterochromatin formation
    • DOI 10.1016/j.cell.2005.02.007
    • Onodera, Y., Haag, J.R., Ream, T., Nunes, P.C., Pontes, O. and Pikaard, C.S. (2005) Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 120: 613-622. (Pubitemid 40343074)
    • (2005) Cell , vol.120 , Issue.5 , pp. 613-622
    • Onodera, Y.1    Haag, J.R.2    Ream, T.3    Nunes, P.C.4    Pontes, O.5    Pikaard, C.S.6
  • 141
    • 54049138948 scopus 로고    scopus 로고
    • Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation
    • Pandey, R.R., Mondal, T., Mohammad, F., Enroth, S., Redrup, L., Komorowski, J. et al. (2008) Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation. Mol. Cell 32: 232-246.
    • (2008) Mol. Cell , vol.32 , pp. 232-246
    • Pandey, R.R.1    Mondal, T.2    Mohammad, F.3    Enroth, S.4    Redrup, L.5    Komorowski, J.6
  • 142
    • 33646885228 scopus 로고    scopus 로고
    • Arabidopsis displays centromeric DNA hypomethylation and cytological alterations of heterochromatin upon attack by Pseudomonas syringae
    • DOI 10.1094/MPMI-19-0577
    • Pavet, V., Quintero, C., Cecchini, N.M., Rosa, A.L. and Alvarez, M.E. (2006) Arabidopsis displays centromeric DNA hypomethylation and cytological alterations of heterochromatin upon attack by Pseudomonas syringae. Mol. Plant-Microbe Interact. 19: 577-587. (Pubitemid 43787722)
    • (2006) Molecular Plant-Microbe Interactions , vol.19 , Issue.6 , pp. 577-587
    • Pavet, V.1    Quintero, C.2    Cecchini, N.M.3    Rosa, A.L.4    Alvarez, M.E.5
  • 143
    • 33646824880 scopus 로고    scopus 로고
    • AtMBD9: A protein with a methyl-CpG-binding domain regulates flowering time and shoot branching in Arabidopsis
    • DOI 10.1111/j.1365-313X.2006.02691.x
    • Peng, M., Cui, Y., Bi, Y.-M. and Rothstein, S.J. (2006) AtMBD9: a protein with a methyl-CpG-binding domain regulates flowering time and shoot branching in Arabidopsis. Plant J. 46: 282-296. (Pubitemid 43773567)
    • (2006) Plant Journal , vol.46 , Issue.2 , pp. 282-296
    • Peng, M.1    Cui, Y.2    Bi, Y.-M.3    Rothstein, S.J.4
  • 146
    • 33745690105 scopus 로고    scopus 로고
    • The Arabidopsis Chromatin-Modifying Nuclear siRNA Pathway Involves a Nucleolar RNA Processing Center
    • DOI 10.1016/j.cell.2006.05.031, PII S0092867406007537
    • Pontes, O., Li, C.F., Nunes, P.C., Haag, J., Ream, T., Vitins, A. et al. (2006) The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell 126: 79-92. (Pubitemid 44026550)
    • (2006) Cell , vol.126 , Issue.1 , pp. 79-92
    • Pontes, O.1    Li, C.F.2    Nunes, P.C.3    Haag, J.4    Ream, T.5    Vitins, A.6    Jacobsen, S.E.7    Pikaard, C.S.8
  • 147
    • 24344433177 scopus 로고    scopus 로고
    • Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis
    • DOI 10.1101/gad.348405
    • Pontier, D., Yahubyan, G., Vega, D., Bulski, A., Saez-Vasquez, J., Hakimi, M.A. et al. (2005) Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis. Genes Dev. 19: 2030-2040. (Pubitemid 41247960)
    • (2005) Genes and Development , vol.19 , Issue.17 , pp. 2030-2040
    • Pontier, D.1    Yahubyan, G.2    Vega, D.3    Bulski, A.4    Saez-Vasquez, J.5    Hakimi, M.-A.6    Lerbs-Mache, S.7    Colot, V.8    Lagrange, T.9
  • 148
    • 0242500970 scopus 로고    scopus 로고
    • Two means of transcriptional reactivation within heterochromatin
    • DOI 10.1046/j.1365-313X.2003.01667.x
    • Probst, A.V., Fransz, P.F., Paszkowski, J. and Scheid, O.M. (2003) Two means of transcriptional reactivation within heterochromatin. Plant J. 33: 743-749. (Pubitemid 36325916)
    • (2003) Plant Journal , vol.33 , Issue.4 , pp. 743-749
    • Probst, A.V.1    Fransz, P.F.2    Paszkowski, J.3    Mittelsten Scheid, O.4
  • 151
    • 78651515883 scopus 로고    scopus 로고
    • A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo
    • Rajakumara, E., Law, J.A., Simanshu, D.K., Voigt, P., Johnson, L.M., Reinberg, D. et al. (2011) A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo. Genes Dev. 25: 137-152.
    • (2011) Genes Dev. , vol.25 , pp. 137-152
    • Rajakumara, E.1    Law, J.A.2    Simanshu, D.K.3    Voigt, P.4    Johnson, L.M.5    Reinberg, D.6
  • 152
    • 58649104893 scopus 로고    scopus 로고
    • Subunit compositions of the RNA-silencing enzymes Pol IV and Pol v reveal their origins as specialized forms of RNA polymerase II
    • Ream, T.S., Haag, J.R., Wierzbicki, A.T., Nicora, C.D., Norbeck, A.D., Zhu, J.K. et al. (2009) Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II. Mol. Cell 33: 192-203.
    • (2009) Mol. Cell , vol.33 , pp. 192-203
    • Ream, T.S.1    Haag, J.R.2    Wierzbicki, A.T.3    Nicora, C.D.4    Norbeck, A.D.5    Zhu, J.K.6
  • 153
    • 22844457491 scopus 로고    scopus 로고
    • DNA methylation and human disease
    • DOI 10.1038/nrg1655
    • Robertson, K.D. (2005) DNA methylation and human disease. Nat. Rev. Genet. 6: 597-610. (Pubitemid 41044297)
    • (2005) Nature Reviews Genetics , vol.6 , Issue.8 , pp. 597-610
    • Robertson, K.D.1
  • 154
    • 0035051285 scopus 로고    scopus 로고
    • Regulation of Activator/Dissociation transposition by replication and DNA methylation
    • Ros, F. and Kunze, R. (2001) Regulation of Activator/Dissociation transposition by replication and DNA methylation. Genetics 157: 1723-1733. (Pubitemid 32298839)
    • (2001) Genetics , vol.157 , Issue.4 , pp. 1723-1733
    • Ros, F.1    Kunze, R.2
  • 155
    • 79956066320 scopus 로고    scopus 로고
    • Integrative epigenomic mapping defines four main chromatin states in Arabidopsis
    • Roudier, F., Ahmed, I., Berard, C., Sarazin, A., Mary-Huard, T., Cortijo, S. et al. (2011) Integrative epigenomic mapping defines four main chromatin states in Arabidopsis. EMBO J. 30: 1928-1938.
    • (2011) EMBO J. , vol.30 , pp. 1928-1938
    • Roudier, F.1    Ahmed, I.2    Berard, C.3    Sarazin, A.4    Mary-Huard, T.5    Cortijo, S.6
  • 156
    • 4344685735 scopus 로고    scopus 로고
    • Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assembly
    • DOI 10.1016/j.molcel.2004.06.043, PII S1097276504004046
    • Sarraf, S.A. and Stancheva, I. (2004) Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assembly. Mol. Cell 15: 595-605. (Pubitemid 39141786)
    • (2004) Molecular Cell , vol.15 , Issue.4 , pp. 595-605
    • Sarraf, S.A.1    Stancheva, I.2
  • 157
    • 70349329405 scopus 로고    scopus 로고
    • Many paths to one goal? the proteins that recognize methylated DNA in eukaryotes
    • Sasai, N. and Defossez, P.A. (2009) Many paths to one goal? The proteins that recognize methylated DNA in eukaryotes. Int. J. Dev. Biol. 53: 323-334.
    • (2009) Int. J. Dev. Biol. , vol.53 , pp. 323-334
    • Sasai, N.1    Defossez, P.A.2
  • 158
    • 38549116060 scopus 로고    scopus 로고
    • Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana
    • DOI 10.1126/science.1150987
    • Saze, H., Shiraishi, A., Miura, A. and Kakutani, T. (2008) Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana. Science 319: 462-465. (Pubitemid 351160579)
    • (2008) Science , vol.319 , Issue.5862 , pp. 462-465
    • Saze, H.1    Shiraishi, A.2    Miura, A.3    Kakutani, T.4
  • 160
    • 60249097612 scopus 로고    scopus 로고
    • Histone H2B deubiquitination is required for transcriptional activation of FLOWERING LOCUS C and for proper control of flowering in Arabidopsis
    • Schmitz, R.J., Tamada, Y., Doyle, M.R., Zhang, X. and Amasino, R.M. (2009) Histone H2B deubiquitination is required for transcriptional activation of FLOWERING LOCUS C and for proper control of flowering in Arabidopsis. Plant Physiol. 149: 1196-1204.
    • (2009) Plant Physiol. , vol.149 , pp. 1196-1204
    • Schmitz, R.J.1    Tamada, Y.2    Doyle, M.R.3    Zhang, X.4    Amasino, R.M.5
  • 162
    • 77952352352 scopus 로고    scopus 로고
    • JMJ14, a JmjC domain protein, is required for RNA silencing and cell-to-cell movement of an RNA silencing signal in Arabidopsis
    • Searle, I.R., Pontes, O., Melnyk, C.W., Smith, L.M. and Baulcombe, D.C. (2010) JMJ14, a JmjC domain protein, is required for RNA silencing and cell-to-cell movement of an RNA silencing signal in Arabidopsis. Genes Dev. 24: 986-991.
    • (2010) Genes Dev. , vol.24 , pp. 986-991
    • Searle, I.R.1    Pontes, O.2    Melnyk, C.W.3    Smith, L.M.4    Baulcombe, D.C.5
  • 163
    • 68349125112 scopus 로고    scopus 로고
    • What controls nucleosome positions?
    • Segal, E. and Widom, J. (2009) What controls nucleosome positions? Trends Genet. 25: 335-343.
    • (2009) Trends Genet. , vol.25 , pp. 335-343
    • Segal, E.1    Widom, J.2
  • 165
    • 0033964296 scopus 로고    scopus 로고
    • SINE insertions: Powerful tools for molecular systematics
    • DOI 10.1002/(SICI)1521-1878(200002)22:2<148::AID-BIES6>3.0.CO;2-Z
    • Shedlock, A.M. and Okada, N. (2000) SINE insertions: powerful tools for molecular systematics. Bioessays 22: 148-160. (Pubitemid 30092081)
    • (2000) BioEssays , vol.22 , Issue.2 , pp. 148-160
    • Shedlock, A.M.1    Okada, N.2
  • 166
    • 33644613415 scopus 로고    scopus 로고
    • Dominance relationships between self-incompatibility alleles controlled by DNA methylation
    • Shiba, H., Kakizaki, T., Iwano, M., Tarutani, Y., Watanabe, M., Isogai, A. et al. (2006) Dominance relationships between self-incompatibility alleles controlled by DNA methylation. Nat. Genet. 38: 297-299.
    • (2006) Nat. Genet. , vol.38 , pp. 297-299
    • Shiba, H.1    Kakizaki, T.2    Iwano, M.3    Tarutani, Y.4    Watanabe, M.5    Isogai, A.6
  • 167
    • 61349152303 scopus 로고    scopus 로고
    • Characterization of autonomous Dart1 transposons belonging to the hAT superfamily in rice
    • Shimatani, Z., Takagi, K., Eun, C.-H., Maekawa, M., Takahara, H., Hoshino, A. et al. (2009) Characterization of autonomous Dart1 transposons belonging to the hAT superfamily in rice. Mol. Genet. Genomics 281: 329-344.
    • (2009) Mol. Genet. Genomics , vol.281 , pp. 329-344
    • Shimatani, Z.1    Takagi, K.2    Eun, C.-H.3    Maekawa, M.4    Takahara, H.5    Hoshino, A.6
  • 168
    • 77957326607 scopus 로고    scopus 로고
    • The epigenetic control of the Athila family of retrotransposons in Arabidopsis
    • Slotkin, R.K. (2010) The epigenetic control of the Athila family of retrotransposons in Arabidopsis. Epigenetics 5: 483-490.
    • (2010) Epigenetics , vol.5 , pp. 483-490
    • Slotkin, R.K.1
  • 169
    • 20044378849 scopus 로고    scopus 로고
    • Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication
    • DOI 10.1038/ng1576
    • Slotkin, R.K., Freeling, M. and Lisch, D. (2005) Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication. Nat. Genet. 37: 641-644. (Pubitemid 40770421)
    • (2005) Nature Genetics , vol.37 , Issue.6 , pp. 641-644
    • Slotkin, R.K.1    Freeling, M.2    Lisch, D.3
  • 170
    • 33947303168 scopus 로고    scopus 로고
    • Transposable elements and the epigenetic regulation of the genome
    • DOI 10.1038/nrg2072, PII NRG2072
    • Slotkin, R.K. and Martienssen, R. (2007) Transposable elements and the epigenetic regulation of the genome. Nat. Rev. Genet. 8: 272-285. (Pubitemid 46439291)
    • (2007) Nature Reviews Genetics , vol.8 , Issue.4 , pp. 272-285
    • Slotkin, R.K.1    Martienssen, R.2
  • 171
    • 59349118366 scopus 로고    scopus 로고
    • Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
    • Slotkin, R.K., Vaughn, M., Borges, F., Tanurdzic, M., Becker, J.D., Feijó, J.A. et al. (2009) Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell 136: 461-472.
    • (2009) Cell , vol.136 , pp. 461-472
    • Slotkin, R.K.1    Vaughn, M.2    Borges, F.3    Tanurdzic, M.4    Becker, J.D.5    Feijó, J.A.6
  • 172
    • 34347382532 scopus 로고    scopus 로고
    • An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis
    • DOI 10.1105/tpc.107.051540
    • Smith, L.M., Pontes, O., Searle, I., Yelina, N., Yousafzai, F.K., Herr, A.J. et al. (2007) An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis. Plant Cell 19: 1507-1521. (Pubitemid 47025373)
    • (2007) Plant Cell , vol.19 , Issue.5 , pp. 1507-1521
    • Smith, L.M.1    Pontes, O.2    Searle, I.3    Yelina, N.4    Yousafzai, F.K.5    Herr, A.J.6    Pikaard, C.S.7    Baulcombe, D.C.8
  • 173
    • 34250025664 scopus 로고    scopus 로고
    • Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination
    • DOI 10.1038/nature05864, PII NATURE05864
    • Sridhar, V.V., Kapoor, A., Zhang, K., Zhu, J., Zhou, T., Hasegawa, P.M. et al. (2007) Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination. Nature 447: 735-738. (Pubitemid 46889731)
    • (2007) Nature , vol.447 , Issue.7145 , pp. 735-738
    • Sridhar, V.V.1    Kapoor, A.2    Zhang, K.3    Zhu, J.4    Zhou, T.5    Hasegawa, P.M.6    Bressan, R.A.7    Zhu, J.-K.8
  • 174
    • 0033869467 scopus 로고    scopus 로고
    • Endogenous targets of transcriptional gene silencing in Arabidopsis
    • DOI 10.1105/tpc.12.7.1165
    • Steimer, A., Amedeo, P., Afsar, K., Fransz, P., Scheid, O.M. and Paszkowski, J. (2000) Endogenous targets of transcriptional gene silencing in Arabidopsis. Plant Cell 12: 1165-1178. (Pubitemid 30622720)
    • (2000) Plant Cell , vol.12 , Issue.7 , pp. 1165-1178
    • Steimer, A.1    Amedeo, P.2    Afsar, K.3    Fransz, P.4    Scheid, O.M.5    Paszkowski, J.6
  • 175
    • 43749098985 scopus 로고    scopus 로고
    • DNA methylation landscapes: Provocative insights from epigenomics
    • DOI 10.1038/nrg2341, PII NRG2341
    • Suzuki, M.M. and Bird, A. (2008) DNA methylation landscapes: provocative insights from epigenomics. Nat. Rev. Genet. 9: 465-476. (Pubitemid 351693975)
    • (2008) Nature Reviews Genetics , vol.9 , Issue.6 , pp. 465-476
    • Suzuki, M.M.1    Bird, A.2
  • 176
    • 33244480083 scopus 로고    scopus 로고
    • Large-scale systematic study on stability of the Ds element and timing of transposition in rice
    • DOI 10.1093/pcp/pci226
    • Szeverenyi, I., Ramamoorthy, R., Teo, Z.W., Luan, H.F., Ma, Z.G. and Ramachandran, S. (2006) Large-scale systematic study on stability of the Ds element and timing of transposition in rice. Plant Cell Physiol. 47: 84-95. (Pubitemid 43278250)
    • (2006) Plant and Cell Physiology , vol.47 , Issue.1 , pp. 84-95
    • Szeverenyi, I.1    Ramamoorthy, R.2    Zhi, W.T.3    Hong, F.L.4    Zhi, G.M.5    Ramachandran, S.6
  • 177
    • 54349095323 scopus 로고    scopus 로고
    • G9a/GLP complexes independently mediate H3K9 and DNA methylation to silence transcription
    • Tachibana, M., Matsumura, Y., Fukuda, M., Kimura, H. and Shinkai, Y. (2008) G9a/GLP complexes independently mediate H3K9 and DNA methylation to silence transcription. EMBO J. 27: 2681-2690.
    • (2008) EMBO J. , vol.27 , pp. 2681-2690
    • Tachibana, M.1    Matsumura, Y.2    Fukuda, M.3    Kimura, H.4    Shinkai, Y.5
  • 179
    • 66149146320 scopus 로고    scopus 로고
    • Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
    • Tahiliani, M., Koh, K.P., Shen, Y.H., Pastor, W.A., Bandukwala, H., Brudno, Y. et al. (2009) Conversion of 5-methylcytosine to 5- hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 324: 930-935.
    • (2009) Science , vol.324 , pp. 930-935
    • Tahiliani, M.1    Koh, K.P.2    Shen, Y.H.3    Pastor, W.A.4    Bandukwala, H.5    Brudno, Y.6
  • 180
    • 84861062626 scopus 로고    scopus 로고
    • Body-methylated genes in Arabidopsis thaliana are functionally important and evolve slowly
    • Takuno, S. and Gaut, B.S. (2011) Body-methylated genes in Arabidopsis thaliana are functionally important and evolve slowly. Mol. Biol. Evol. 29: 219-227.
    • (2011) Mol. Biol. Evol. , vol.29 , pp. 219-227
    • Takuno, S.1    Gaut, B.S.2
  • 181
    • 0035891265 scopus 로고    scopus 로고
    • A histone H3 methyltransferase controls DNA methylation in Neurospora crassa
    • DOI 10.1038/35104508
    • Tamaru, H. and Selker, E.U. (2001) A histone H3 methyltransferase controls DNA methylation in Neurospora crassa. Nature 414: 277-283. (Pubitemid 33097798)
    • (2001) Nature , vol.414 , Issue.6861 , pp. 277-283
    • Tamaru, H.1    Selker, E.U.2
  • 182
    • 70350238350 scopus 로고    scopus 로고
    • The biogenesis and function of PIWI proteins and piRNAs: Progress and prospect
    • Thomson, T. and Lin, H. (2009) The biogenesis and function of PIWI proteins and piRNAs: progress and prospect. Annu. Rev. Cell Dev. Biol. 25: 355-376.
    • (2009) Annu. Rev. Cell Dev. Biol. , vol.25 , pp. 355-376
    • Thomson, T.1    Lin, H.2
  • 183
    • 33644861343 scopus 로고    scopus 로고
    • An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice
    • DOI 10.1111/j.1365-313X.2005.02600.x
    • Tsugane, K., Maekawa, M., Takagi, K., Takahara, H., Qian, Q., Eun, C.-H. et al. (2006) An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice. Plant J. 45: 46-57. (Pubitemid 43373731)
    • (2006) Plant Journal , vol.45 , Issue.1 , pp. 46-57
    • Tsugane, K.1    Maekawa, M.2    Takagi, K.3    Takahara, H.4    Qian, Q.5    Eun, C.-H.6    Iida, S.7
  • 185
    • 7044245474 scopus 로고    scopus 로고
    • ICBP90, an E2F-1 target, recruits HDAC1 and binds to methyl-CpG through its SRA domain
    • DOI 10.1038/sj.onc.1208053
    • Unoki, M., Nishidate, T. and Nakamura, Y. (2004) ICBP90, an E2F-1 target, recruits HDAC1 and binds to methyl-CpG through its SRA domain. Oncogene 23: 7601-7610. (Pubitemid 39424918)
    • (2004) Oncogene , vol.23 , Issue.46 , pp. 7601-7610
    • Unoki, M.1    Nishidate, T.2    Nakamura, Y.3
  • 186
    • 33751533880 scopus 로고    scopus 로고
    • MOM1 mediates DNA-methylation-independent silencing of repetitive sequences in Arabidopsis
    • DOI 10.1038/sj.embor.7400791, PII 7400791
    • Vaillant, I., Schubert, I., Tourmente, S. and Mathieu, O. (2006) MOM1 mediates DNA-methylation-independent silencing of repetitive sequences in Arabidopsis. EMBO Rep. 7: 1273-1278. (Pubitemid 44835097)
    • (2006) EMBO Reports , vol.7 , Issue.12 , pp. 1273-1278
    • Vaillant, I.1    Schubert, I.2    Tourmente, S.3    Mathieu, O.4
  • 187
    • 33847055935 scopus 로고    scopus 로고
    • Endogenous cytosine damage products alter the site selectivity of human DNA maintenance methyltransferase DNMT1
    • Valinluck, V. and Sowers, L.C. (2007) Endogenous cytosine damage products alter the site selectivity of human DNA maintenance methyltransferase DNMT1. Cancer Res. 67: 946-950.
    • (2007) Cancer Res. , vol.67 , pp. 946-950
    • Valinluck, V.1    Sowers, L.C.2
  • 188
    • 79953758929 scopus 로고    scopus 로고
    • The SUVR4 histone lysine methyltransferase binds ubiquitin and converts H3K9me1 to H3K9me3 on transposon chromatin in Arabidopsis
    • Veiseth, S.V., Rahman, M.A., Yap, K.L., Fischer, A., Egge-Jacobsen, W., Reuter, G. et al. (2011) The SUVR4 histone lysine methyltransferase binds ubiquitin and converts H3K9me1 to H3K9me3 on transposon chromatin in Arabidopsis. PLoS Genet. 7: e1001325.
    • (2011) PLoS Genet. , vol.7
    • Veiseth, S.V.1    Rahman, M.A.2    Yap, K.L.3    Fischer, A.4    Egge-Jacobsen, W.5    Reuter, G.6
  • 189
    • 85158023800 scopus 로고    scopus 로고
    • MuDR/Mu transposable elements in maize
    • Edited by Craig, N.L., Craigie, R., Gellert, M. and Lambowitz, A.M. ASM Press Washington DC
    • Walbot, V. and Rudenko, G.N. (2002) MuDR/Mu transposable elements in maize. In Mobile DNA II. Edited by Craig, N.L., Craigie, R., Gellert, M. and Lambowitz, A.M. pp. 533-564.ASM Press Washington DC
    • (2002) Mobile DNA II , pp. 533-564
    • Walbot, V.1    Rudenko, G.N.2
  • 190
    • 0028031830 scopus 로고
    • RNA-directed de novo methylation of genomic sequences in plants
    • DOI 10.1016/0092-8674(94)90119-8
    • Wassenegger, M., Heimes, S., Riedel, L. and Sanger, H.L. (1994) RNA-directed de novo methylation of genomic sequences in plants. Cell 76: 567-576. (Pubitemid 24064176)
    • (1994) Cell , vol.76 , Issue.3 , pp. 567-576
    • Wassenegger, M.1    Heimes, S.2    Riedel, L.3    Sanger, H.L.4
  • 191
    • 55449131096 scopus 로고    scopus 로고
    • Noncoding transcription by RNA polymerase Pol IVb/Pol v mediates transcriptional silencing of overlapping and adjacent genes
    • Wierzbicki, A.T., Haag, J.R. and Pikaard, C.S. (2008) Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell 135: 635-648.
    • (2008) Cell , vol.135 , pp. 635-648
    • Wierzbicki, A.T.1    Haag, J.R.2    Pikaard, C.S.3
  • 192
    • 67349112845 scopus 로고    scopus 로고
    • RNA polymerase v transcription guides ARGONAUTE4 to chromatin
    • Wierzbicki, A.T., Ream, T.S., Haag, J.R. and Pikaard, C.S. (2009) RNA polymerase V transcription guides ARGONAUTE4 to chromatin. Nat. Genet. 41: 630-634.
    • (2009) Nat. Genet. , vol.41 , pp. 630-634
    • Wierzbicki, A.T.1    Ream, T.S.2    Haag, J.R.3    Pikaard, C.S.4
  • 193
    • 50849106398 scopus 로고    scopus 로고
    • Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis
    • Woo, H.R., Dittmer, T.A. and Richards, E.J. (2008) Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis. PLoS Genet. 4: e1000156.
    • (2008) PLoS Genet. , vol.4
    • Woo, H.R.1    Dittmer, T.A.2    Richards, E.J.3
  • 194
    • 33846961476 scopus 로고    scopus 로고
    • VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization
    • Woo, H.R., Pontes, O., Pikaard, C.S. and Richards, E.J. (2007) VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization. Gene Dev. 21: 267-277.
    • (2007) Gene Dev. , vol.21 , pp. 267-277
    • Woo, H.R.1    Pontes, O.2    Pikaard, C.S.3    Richards, E.J.4
  • 195
    • 77956095231 scopus 로고    scopus 로고
    • Active DNA demethylation: Many roads lead to Rome
    • Wu, S.C. and Zhang, Y. (2010) Active DNA demethylation: many roads lead to Rome. Nat. Rev. Mol. Cell Biol. 11: 607-620.
    • (2010) Nat. Rev. Mol. Cell Biol. , vol.11 , pp. 607-620
    • Wu, S.C.1    Zhang, Y.2
  • 197
    • 67649494615 scopus 로고    scopus 로고
    • AtMBD9 modulates Arabidopsis development through the dual epigenetic pathways of DNA methylation and histone acetylation
    • Yaish, M.W.F., Peng, M. and Rothstein, S.J. (2009) AtMBD9 modulates Arabidopsis development through the dual epigenetic pathways of DNA methylation and histone acetylation. Plant J. 59: 123-135.
    • (2009) Plant J. , vol.59 , pp. 123-135
    • Yaish, M.W.F.1    Peng, M.2    Rothstein, S.J.3
  • 198
    • 74949088965 scopus 로고    scopus 로고
    • MOM1 and Pol-IV/V interactions regulate the intensity and specificity of transcriptional gene silencing
    • Yokthongwattana, C., Bucher, E., Caikovski, M., Vaillant, I., Nicolet, J., Scheid, O.M. et al. (2010) MOM1 and Pol-IV/V interactions regulate the intensity and specificity of transcriptional gene silencing. EMBO J. 29: 340-351.
    • (2010) EMBO J. , vol.29 , pp. 340-351
    • Yokthongwattana, C.1    Bucher, E.2    Caikovski, M.3    Vaillant, I.4    Nicolet, J.5    Scheid, O.M.6
  • 199
    • 13644256193 scopus 로고    scopus 로고
    • Methylation as a crucial step in plant microRNA biogenesis
    • DOI 10.1126/science.1107130
    • Yu, B., Yang, Z., Li, J., Minakhina, S., Yang, M., Padgett, R.W. et al. (2005) Methylation as a crucial step in plant microRNA biogenesis. Science 307: 932-935. (Pubitemid 40229231)
    • (2005) Science , vol.307 , Issue.5711 , pp. 932-935
    • Yu, B.1    Yang, Z.2    Li, J.3    Minakhina, S.4    Yang, M.5    Padgett, R.W.6    Steward, R.7    Chen, X.8
  • 200
    • 0038129767 scopus 로고    scopus 로고
    • Characterization of Arabidopsis thaliana methyl-CpG-binding domain (MBD) proteins
    • DOI 10.1046/j.1365-313X.2003.01756.x
    • Zemach, A. and Grafi, G. (2003) Characterization of Arabidopsis thaliana methyl-CpG-binding domain (MBD) proteins. Plant J. 34: 565-572. (Pubitemid 36720192)
    • (2003) Plant Journal , vol.34 , Issue.5 , pp. 565-572
    • Zemach, A.1    Grafi, G.2
  • 201
    • 33846900215 scopus 로고    scopus 로고
    • Methyl-CpG-binding domain proteins in plants: interpreters of DNA methylation
    • DOI 10.1016/j.tplants.2006.12.004, PII S1360138506003189
    • Zemach, A. and Grafi, G. (2007) Methyl-CpG-binding domain proteins in plants: interpreters of DNA methylation. Trends Plant Sci. 12: 80-85. (Pubitemid 46241006)
    • (2007) Trends in Plant Science , vol.12 , Issue.2 , pp. 80-85
    • Zemach, A.1    Grafi, G.2
  • 202
    • 22144493574 scopus 로고    scopus 로고
    • DDM1 binds Arabidopsis methyl-CpG binding domain proteins and affects their subnuclear localization
    • DOI 10.1105/tpc.105.031567
    • Zemach, A., Li, Y., Wayburn, B., Ben-Meir, H., Kiss, V., Avivi, Y. et al. (2005) DDM1 binds Arabidopsis methyl-CpG binding domain proteins and affects their subnuclear localization. Plant Cell 17: 1549-1558. (Pubitemid 43138203)
    • (2005) Plant Cell , vol.17 , Issue.5 , pp. 1549-1558
    • Zemach, A.1    Li, Y.2    Wayburn, B.3    Ben-Meir, H.4    Kiss, V.5    Avivi, Y.6    Kalchenko, V.7    Jacobsen, S.E.8    Grafi, G.9
  • 203
    • 77952355762 scopus 로고    scopus 로고
    • Genome-wide evolutionary analysis of eukaryotic DNA methylation
    • Zemach, A., McDaniel, I.E., Silva, P. and Zilberman, D. (2010) Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 328: 916-919.
    • (2010) Science , vol.328 , pp. 916-919
    • Zemach, A.1    McDaniel, I.E.2    Silva, P.3    Zilberman, D.4
  • 204
    • 1842681942 scopus 로고    scopus 로고
    • Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea
    • DOI 10.1073/pnas.0401243101
    • Zhang, X. and Wessler, S.R. (2004) Genome-wide comparative analysis of the transposable elements in the related spedies Arabidopsis thaliana and Brassica oleracea. Proc. Natl Acad. Sci. USA 101: 5589-5594. (Pubitemid 38481200)
    • (2004) Proceedings of the National Academy of Sciences of the United States of America , vol.101 , Issue.15 , pp. 5589-5594
    • Zhang, X.1    Wessler, S.R.2
  • 207
    • 0033180082 scopus 로고    scopus 로고
    • Analysis of the NuRD subunits reveals a histone deacetylase core complex and a connection with DNA methylation
    • Zhang, Y., Ng, H.H., Erdjument-Bromage, H., Tempst, P., Bird, A. and Reinberg, D. (1999) Analysis of the NuRD subunits reveals a histone deacetylase core complex and a connection with DNA methylation. Genes Dev. 13: 1924-1935. (Pubitemid 29407360)
    • (1999) Genes and Development , vol.13 , Issue.15 , pp. 1924-1935
    • Zhang, Y.1    Ng, H.-H.2    Erdjument-Bromage, H.3    Tempst, P.4    Bird, A.5    Reinberg, D.6
  • 209
    • 72849124237 scopus 로고    scopus 로고
    • Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol v in siRNA-directed transcriptional gene silencing in Arabidopsis
    • Zheng, B., Wang, Z., Li, S., Yu, B., Liu, J.Y. and Chen, X. (2009) Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis. Genes Dev. 23: 2850-2860.
    • (2009) Genes Dev. , vol.23 , pp. 2850-2860
    • Zheng, B.1    Wang, Z.2    Li, S.3    Yu, B.4    Liu, J.Y.5    Chen, X.6
  • 210
    • 55249089475 scopus 로고    scopus 로고
    • ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis
    • Zheng, X.W., Pontes, O., Zhu, J.H., Miki, D., Zhang, F., Li, W.X. et al. (2008) ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis. Nature 455: 1259-1262.
    • (2008) Nature , vol.455 , pp. 1259-1262
    • Zheng, X.W.1    Pontes, O.2    Zhu, J.H.3    Miki, D.4    Zhang, F.5    Li, W.X.6
  • 211
    • 77951824122 scopus 로고    scopus 로고
    • An SGS3-like protein functions in RNA-directed DNA methylation and transcriptional gene silencing in Arabidopsis
    • Zheng, Z., Xing, Y., He, X.J., Li, W., Hu, Y., Yadav, S.K. et al. (2010) An SGS3-like protein functions in RNA-directed DNA methylation and transcriptional gene silencing in Arabidopsis. Plant J. 62: 92-99.
    • (2010) Plant J. , vol.62 , pp. 92-99
    • Zheng, Z.1    Xing, Y.2    He, X.J.3    Li, W.4    Hu, Y.5    Yadav, S.K.6
  • 212
    • 77954460369 scopus 로고    scopus 로고
    • Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression
    • Zhou, J., Wang, X., He, K., Charron, J.B., Elling, A.A. and Deng, X.W. (2010) Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression. Plant Mol. Biol. 72: 585-595.
    • (2010) Plant Mol. Biol. , vol.72 , pp. 585-595
    • Zhou, J.1    Wang, X.2    He, K.3    Charron, J.B.4    Elling, A.A.5    Deng, X.W.6
  • 213
    • 0034326849 scopus 로고    scopus 로고
    • 5-Methylcytosine DNA glycosylase activity is also present in the human MBD4 (G/T mismatch glycosylase) and in a related avian sequence
    • Zhu, B., Zheng, Y., Angliker, H., Schwarz, S., Thiry, S., Siegmann, M. et al. (2000a) 5-Methylcytosine DNA glycosylase activity is also present in the human MBD4 (G/T mismatch glycosylase) and in a related avian sequence. Nucleic Acids Res. 28: 4157-4165.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 4157-4165
    • Zhu, B.1    Zheng, Y.2    Angliker, H.3    Schwarz, S.4    Thiry, S.5    Siegmann, M.6
  • 215
    • 33845866061 scopus 로고    scopus 로고
    • The DNA glycosylase/lyase ROS1 functions in pruning DNA methylation patterns in arabidopsis
    • DOI 10.1016/j.cub.2006.10.059, PII S0960982206024341
    • Zhu, J.H., Kapoor, A., Sridhar, V.V., Agius, F. and Zhu, J.K. (2007) The DNA glycosylase/lyase ROS1 functions in pruning DNA methylation patterns in Arabidopsis. Curr. Biol. 17: 54-59. (Pubitemid 46027567)
    • (2007) Current Biology , vol.17 , Issue.1 , pp. 54-59
    • Zhu, J.1    Kapoor, A.2    Sridhar, V.V.3    Agius, F.4    Zhu, J.-K.5
  • 216
    • 73349104113 scopus 로고    scopus 로고
    • Active DNA demethylation mediated by DNA glycosylases
    • Zhu, J.K. (2009) Active DNA demethylation mediated by DNA glycosylases. Annu. Rev. Genet. 43: 143-166.
    • (2009) Annu. Rev. Genet. , vol.43 , pp. 143-166
    • Zhu, J.K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.