Integrated epigenomic analyses of neuronal MeCP2 reveal a role for long-range interaction with active genes

Proceedings of the National Academy of Sciences of the United States of America

Volumn 104, Issue 49, 2007, Pages 19416-19421

  Yasui, Dag H ^a   Peddada, Sailaja ^a   Bieda, Mark C ^a   Vallero, Roxanne O ^a   Hogart, Amber ^a   Nagarajan, Raman P ^a   Thatcher, Karen N ^a   Farnham, Peggy J ^a   LaSalle, Janine M ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Chromatin; DNA methylation; Epigenetics; Genomics; Rett syndrome

Indexed keywords

BRAIN DERIVED NEUROTROPHIC FACTOR; METHYL CPG BINDING PROTEIN 2; TRANSCRIPTION FACTOR JUNB;

ARTICLE; BINDING SITE; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; CPG ISLAND; DNA METHYLATION; EPIGENETICS; GENE INTERACTION; GENE LOCUS; GENE MAPPING; GENE MUTATION; GENOMICS; HUMAN; HUMAN CELL; NERVE CELL; PRIORITY JOURNAL;

BINDING SITES; CHROMATIN IMMUNOPRECIPITATION; CPG ISLANDS; DNA METHYLATION; GENE EXPRESSION REGULATION; GENE SILENCING; HUMANS; METHYL-CPG-BINDING PROTEIN 2; NEURONS; PROMOTER REGIONS (GENETICS); RETT SYNDROME;

EID: 37649022627     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0707442104     Document Type: Article

References (44)

1. Amir RE, Van den Veyver IB, Wan M, Tran CQ, Francke U, Zoghbi HY (1999) Nat Genet 23:185-188.
2. Shahbazian MD, Zoghbi HY (2001) Curr Opin Neurol 14:171-176.
3. Giacometti E, Luikenhuis S, Beard C, Jaenisch R (2007) Proc Natl Acad Sci USA 104:1931-1936.
4. Guy J, Gan J, Selfridge J, Cobb S, Bird A (2007) Science 315:1143-1147.
5. Meehan RR, Lewis JD, Bird AP (1992) Nucleic Acids Res 20:5085-5092.
6. Lewis JD, Meehan RR, Henzel WJ, Maurer-Fogy I, Jeppesen P, Klein F, Bird A (1992) Cell 69:905-914.
7. Jones PL, Veenstra GJ, Wade PA, Vermaak D, Kass SU, Landsberger N, Strouboulis J, Wolffe AP (1998) Nat Genet 19:187-191.
8. Nan X, Ng HH, Johnson CA, Laherty CD, Turner BM, Eisenman RN, Bird A (1998) Nature 393:386-389.
9. Tudor M, Akbarian S, Chen RZ, Jaenisch R (2002) Proc Natl Acad Sci USA 99:15536-15541.
10. Traynor J, Agarwal P, Lazzeroni L, Francke U (2002) BMC Med Genet 3:12.
11. Georgel PT, Horowitz-Scherer RA, Adkins N, Woodcock CL, Wade PA, Hansen JC (2003) J Biol Chem 278:32181-32188.
12. Nikitina T, Shi X, Ghosh RP, Horowitz-Scherer RA, Hansen JC, Woodcock CL (2007) Mol Cell Biol 27:864-877.
13. Young JI, Hong EP, Castle JC, Crespo-Barreto J, Bowman AB, Rose MF, Kang D, Richman R, Johnson JM, Berget S, Zoghbi HY (2005) Proc Natl Acad Sci USA 102:17551-17558.
14. Adams VH, McBryant SJ, Wade PA, Woodcock CL, Hansen JC (2007) J Biol Chem 282:15057-15064.
15. Nan X, Meehan RR, Bird A (1993) Nucleic Acids Res 21:4886-4892.
16. Samaco RC, Hogart A, LaSalle JM (2005) Hum Mol Genet 14:483-492.
17. Thatcher K, Peddada S, Yasui D, LaSalle JM (2005) Hum Mol Genet 14:785-797.
18. Drewell RA, Goddard CJ, Thomas JO, Surani MA (2002) Nucleic Acids Res 30:1139-1144.
19. Horike S, Cai S, Miyano M, Cheng JF, Kohwi-Shigematsu T (2005) Nat Genet 37:31-40.
20. Peddada S, Yasui DH, LaSalle JM (2006) Hum Mol Genet 15:2003-2014.
21. Martinowich K, Hattori D, Wu H, Fouse S, He F, Hu Y, Fan G, Sun YE (2003) Science 302:890-893.
22. Chen WG, Chang Q, Lin Y, Meissner A, West AE, Griffith EC, Jaenisch R, Greenberg ME (2003) Science 302:885-889.
23. Jung BP, Jugloff DG, Zhang G, Logan R, Brown S, Eubanks JH (2003) J Neurobiol 55:86-96.
24. Bieda M, Xu X, Singer MA, Green R, Farnham PJ (2006) Genome Res 16:595-605.
25. Baker P, Piven J, Schwartz S, Patil S (1994) J Autism Dev Disord 24:529-535.
26. Bundey S, Hardy C, Vickers S, Kilpatrick MW, Corbett JA (1994) Dev Med Child Neurol 36:736-742.
27. Cook EH, Jr., Courchesne RY, Cox NJ, Lord C, Gonen D, Guter SJ, Lincoln A, Nix K, Haas R, Leventhal BL, Courchesne E (1998) Am J Hum Genet 62:1077-1083.
28. Hogart A, Nagarajan RP, Patzel KA, Yasui DH, Lasalle JM (2007) Hum Mol Genet 16:691-703.
29. Ballestar E, Ropero S, Alaminos M, Armstrong J, Setien F, Agrelo R, Fraga MF, Herranz M, Avila S, Pineda M, et al. (2005) Hum Genet 116:91-104.
30. Delgado IJ, Kim DS, Thatcher KN, LaSalle JM, Van den Veyver IB (2006) BMC Med Genet 7:61.
31. Balmer D, Arredondo J, Samaco RC, LaSalle JM (2002) Hum Genet 110:545-552.
32. Thorvaldsen JL, Duran KL, Bartolomei MS (1998) Genes Dev 12:3693-3702.
33. Ng HH, Bird A (1999) Curr Opin Genet Dev 9:158-163.
34. Weber M, Davies JJ, Wittig D, Oakeley EJ, Haase M, Lam WL, Schubeler D (2005) Nat Genet 37:853-862.
35. Weber M, Hellmann I, Stadler MB, Ramos L, Paabo S, Rebhan M, Schubeler D (2007) Nat Genet 39:457-466.
36. Muller C, Readhead C, Diederichs S, Idos G, Yang R, Tidow N, Serve H, Berdel WE, Koeffler HP (2000) Mol Cell Biol 20:3316-3329.
37. Lorincz MC, Schubeler D, Groudine M (2001) Mol Cell Biol 21:7913-7922.
38. Schlingensiepen KH, Wollnik F, Kunst M, Schlingensiepen R, Herdegen T, Brysch W (1994) Cell Mol Neurobiol 14:487-505.
39. Crow YJ, Leitch A, Hayward BE, Garner A, Parmar R, Griffith E, Ali M, Semple C, Aicardi J, Babul-Hirji R, et al. (2006) Nat Genet 38:910-916.
40. Klose RJ, Sarraf SA, Schmiedeberg L, McDermott SM, Stancheva I, Bird AP (2005) Mol Cell 19:667-678.
41. Oberley MJ, Tsao J, Yau P, Farnham PJ (2004) Methods Enzymol 376:315-334.
42. Squazzo SL, O'Geen H, Komashko VM, Krig SR, Jin VX, Jang SW, Margueron R, Reinberg D, Green R, Farnham PJ (2006) Genome Res 16:890-900.
43. He L, Cui H, Walsh C, Mattsson R, Lin W, Anneren G, Pfeifer-Ohlsson S, Ohlsson R (1998) Oncogene 16:113-119.
44. Zhou Z, Hong EJ, Cohen S, Zhao WN, Ho HY, Schmidt L, Chen WG, Lin Y, Savner E, Griffith EC, et al. (2006) Neuron 52:255-269.