메뉴 건너뛰기




Volumn 5, Issue 7, 2010, Pages 569-572

Human non-CG methylation: Are human stem cells plant-like?

Author keywords

Dnmt1; Dnmt3a; Human methylome; Non CG methylation; Stem cells

Indexed keywords

ARTICLE; DNA METHYLATION; GENOME ANALYSIS; HUMAN; HUMAN GENOME; NON CG METHYLATION; NONHUMAN; PLANT GENOME; STEM CELL;

EID: 78449236569     PISSN: 15592294     EISSN: 15592308     Source Type: Journal    
DOI: 10.4161/epi.5.7.12702     Document Type: Article
Times cited : (21)

References (48)
  • 2
    • 0347033302 scopus 로고    scopus 로고
    • Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation
    • Cao X, Aufsatz W, Zilberman D, Mette MF, Huang MS, Matzke M, et al. Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr Biol 2003; 13:2212-7.
    • (2003) Curr Biol , vol.13 , pp. 2212-2217
    • Cao, X.1    Aufsatz, W.2    Zilberman, D.3    Mette, M.F.4    Huang, M.S.5    Matzke, M.6
  • 3
    • 0023655172 scopus 로고
    • The majority of methylated deoxycytidines in human DNA are not in the CpG dinucleotide
    • Woodcock DM, Crowther PJ, Diver WP. The majority of methylated deoxycytidines in human DNA are not in the CpG dinucleotide. Biochem Biophys Res Commun 1987; 145:888-94.
    • (1987) Biochem Biophys Res Commun , vol.145 , pp. 888-894
    • Woodcock, D.M.1    Crowther, P.J.2    Diver, W.P.3
  • 4
    • 0024987810 scopus 로고
    • Establishment of de novo DNA methylation patterns. Transcription factor binding and deoxycytidine methylation at CpG and non-CpG sequences in an integrated adenovirus promoter
    • Toth M, Muller U, Doerfler W. Establishment of de novo DNA methylation patterns. Transcription factor binding and deoxycytidine methylation at CpG and non-CpG sequences in an integrated adenovirus promoter. J Mol Biol 1990; 214:673-83.
    • (1990) J Mol Biol , vol.214 , pp. 673-683
    • Toth, M.1    Muller, U.2    Doerfler, W.3
  • 5
  • 6
    • 0030985032 scopus 로고    scopus 로고
    • Asymmetric methylation in the hypermethylated CpG promoter region of the human L1 retrotransposon
    • Woodcock DM, Lawler CB, Linsenmeyer ME, Doherty JP, Warren WD. Asymmetric methylation in the hypermethylated CpG promoter region of the human L1 retrotransposon. J Biol Chem 1997; 272:7810-6.
    • (1997) J Biol Chem , vol.272 , pp. 7810-7816
    • Woodcock, D.M.1    Lawler, C.B.2    Linsenmeyer, M.E.3    Doherty, J.P.4    Warren, W.D.5
  • 7
    • 0028048766 scopus 로고
    • A mammalian origin of bidirectional DNA replication within the Chinese hamster RPS14 locus
    • Tasheva ES, Roufa DJ. A mammalian origin of bidirectional DNA replication within the Chinese hamster RPS14 locus. Mol Cell Biol 1994; 14: 5628-35.
    • (1994) Mol Cell Biol , vol.14 , pp. 5628-5635
    • Tasheva, E.S.1    Roufa, D.J.2
  • 8
    • 0027968172 scopus 로고
    • Densely methylated DNA islands in mammalian chromosomal replication origins
    • Tasheva ES, Roufa DJ. Densely methylated DNA islands in mammalian chromosomal replication origins. Mol Cell Biol 1994; 14:5636-44.
    • (1994) Mol Cell Biol , vol.14 , pp. 5636-5644
    • Tasheva, E.S.1    Roufa, D.J.2
  • 9
    • 0033809467 scopus 로고    scopus 로고
    • Evidence that cytosine residues within 5'-CCTGG-3' pentanucleotides can be methylated in human DNA independently of the methylating system that modifies 5'-CG-3' dinucleotides
    • Franchina M, Kay PH. Evidence that cytosine residues within 5'-CCTGG-3' pentanucleotides can be methylated in human DNA independently of the methylating system that modifies 5'-CG-3' dinucleotides. DNA Cell Biol 2000; 19:521-6.
    • (2000) DNA Cell Biol , vol.19 , pp. 521-526
    • Franchina, M.1    Kay, P.H.2
  • 11
    • 0032894267 scopus 로고    scopus 로고
    • DNA methylation in the promoter region of the p16 (CDKN2/MTS-1/INK4A) gene in human breast tumours
    • Woodcock DM, Linsenmeyer ME, Doherty JP, Warren WD. DNA methylation in the promoter region of the p16 (CDKN2/MTS-1/INK4A) gene in human breast tumours. Br J Cancer 1999; 79:251-6.
    • (1999) Br J Cancer , vol.79 , pp. 251-256
    • Woodcock, D.M.1    Linsenmeyer, M.E.2    Doherty, J.P.3    Warren, W.D.4
  • 13
    • 57149148425 scopus 로고    scopus 로고
    • Secondary structure at a hot spot for DNA methylation in DNA from human breast cancers
    • Clark J, Smith SS. Secondary structure at a hot spot for DNA methylation in DNA from human breast cancers. Cancer Genomics Proteomics 2008; 5: 241-51.
    • (2008) Cancer Genomics Proteomics , vol.5 , pp. 241-251
    • Clark, J.1    Smith, S.S.2
  • 15
  • 16
  • 18
    • 20744431751 scopus 로고    scopus 로고
    • Evidence for a triplex DNA conformation at the bcl-2 major breakpoint region of the t(14;18) translocation
    • Raghavan SC, Chastain P, Lee JS, Hegde BG, Houston S, Langen R, et al. Evidence for a triplex DNA conformation at the bcl-2 major breakpoint region of the t(14;18) translocation. J Biol Chem 2005; 280:22749-60.
    • (2005) J Biol Chem , vol.280 , pp. 22749-22760
    • Raghavan, S.C.1    Chastain, P.2    Lee, J.S.3    Hegde, B.G.4    Houston, S.5    Langen, R.6
  • 20
    • 3142701238 scopus 로고    scopus 로고
    • Lack of homologous sequence-specific DNA methylation in response to stable dsRNA expression in mouse oocytes
    • Svoboda P, Stein P, Filipowicz W, Schultz RM. Lack of homologous sequence-specific DNA methylation in response to stable dsRNA expression in mouse oocytes. Nucleic Acids Res 2004; 32:3601-6.
    • (2004) Nucleic Acids Res , vol.32 , pp. 3601-3606
    • Svoboda, P.1    Stein, P.2    Filipowicz, W.3    Schultz, R.M.4
  • 21
    • 78649540637 scopus 로고    scopus 로고
    • Induction of DNA methylation and gene silencing by short interfering RNAs in human cells
    • Taira K. Induction of DNA methylation and gene silencing by short interfering RNAs in human cells. Nature 2006; 441:1176.
    • (2006) Nature , vol.441 , pp. 1176
    • Taira, K.1
  • 22
    • 20844435197 scopus 로고    scopus 로고
    • Short hairpin RNA-directed cytosine (CpG) methylation of the RASSF1A gene promoter in HeLa cells
    • Castanotto D, Tommasi S, Li M, Li H, Yanow S, Pfeifer GP, et al. Short hairpin RNA-directed cytosine (CpG) methylation of the RASSF1A gene promoter in HeLa cells. Mol Ther 2005; 12:179-83.
    • (2005) Mol Ther , vol.12 , pp. 179-183
    • Castanotto, D.1    Tommasi, S.2    Li, M.3    Li, H.4    Yanow, S.5    Pfeifer, G.P.6
  • 23
    • 4344705410 scopus 로고    scopus 로고
    • Small interfering RNA-induced transcriptional gene silencing in human cells
    • Morris KV, Chan SW, Jacobsen SE, Looney DJ. Small interfering RNA-induced transcriptional gene silencing in human cells. Science 2004; 305: 1289-92.
    • (2004) Science , vol.305 , pp. 1289-1292
    • Morris, K.V.1    Chan, S.W.2    Jacobsen, S.E.3    Looney, D.J.4
  • 24
    • 34249930701 scopus 로고    scopus 로고
    • Short hairpin RNA causes the methylation of transforming growth factor-beta receptor II promoter and silencing of the target gene in rat hepatic stellate cells
    • Kim JW, Zhang YH, Zern MA, Rossi JJ, Wu J. Short hairpin RNA causes the methylation of transforming growth factor-beta receptor II promoter and silencing of the target gene in rat hepatic stellate cells. Biochem Biophys Res Commun 2007; 359:292-7.
    • (2007) Biochem Biophys Res Commun , vol.359 , pp. 292-297
    • Kim, J.W.1    Zhang, Y.H.2    Zern, M.A.3    Rossi, J.J.4    Wu, J.5
  • 25
    • 23044507007 scopus 로고    scopus 로고
    • Short double-stranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation
    • Ting AH, Schuebel KE, Herman JG, Baylin SB. Short double-stranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation. Nat Genet 2005; 37:906-10.
    • (2005) Nat Genet , vol.37 , pp. 906-910
    • Ting, A.H.1    Schuebel, K.E.2    Herman, J.G.3    Baylin, S.B.4
  • 26
    • 65549158866 scopus 로고    scopus 로고
    • Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells
    • Tan Y, Zhang B, Wu T, Skogerbo G, Zhu X, Guo X, et al. Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells. BMC Mol Biol 2009; 10:12.
    • (2009) BMC Mol Biol , vol.10 , pp. 12
    • Tan, Y.1    Zhang, B.2    Wu, T.3    Skogerbo, G.4    Zhu, X.5    Guo, X.6
  • 27
    • 0028317404 scopus 로고
    • Biological implications of the mechanism of action of human DNA (cytosine-5)methyltransferase
    • Smith SS. Biological implications of the mechanism of action of human DNA (cytosine-5)methyltransferase. Prog Nucleic Acid Res Mol Biol 1994; 49: 65-111.
    • (1994) Prog Nucleic Acid Res Mol Biol , vol.49 , pp. 65-111
    • Smith, S.S.1
  • 29
    • 27244439951 scopus 로고    scopus 로고
    • Transgene-induced CCWGG methylation does not alter CG methylation patterning in human kidney cells
    • Shevchuk T, Kretzner L, Munson K, Axume J, Clark J, Dyachenko OV, et al. Transgene-induced CCWGG methylation does not alter CG methylation patterning in human kidney cells. Nucleic Acids Res 2005; 33:6124-36.
    • (2005) Nucleic Acids Res , vol.33 , pp. 6124-6136
    • Shevchuk, T.1    Kretzner, L.2    Munson, K.3    Axume, J.4    Clark, J.5    Dyachenko, O.V.6
  • 30
    • 0020480862 scopus 로고
    • Asymmetrical distribution of CpG in an 'average' mammalian gene
    • McClelland M, Ivarie R. Asymmetrical distribution of CpG in an 'average' mammalian gene. Nucleic Acids Res 1982; 10:7865-77.
    • (1982) Nucleic Acids Res , vol.10 , pp. 7865-7877
    • McClelland, M.1    Ivarie, R.2
  • 31
    • 0023180798 scopus 로고
    • CpG deficiency, dinucleotide distributions and nucleosome positioning
    • Adams RL, Davis T, Rinaldi A, Eason R. CpG deficiency, dinucleotide distributions and nucleosome positioning. Eur J Biochem 1987; 165:107-15.
    • (1987) Eur J Biochem , vol.165 , pp. 107-115
    • Adams, R.L.1    Davis, T.2    Rinaldi, A.3    Eason, R.4
  • 32
    • 0022005746 scopus 로고
    • DNA methylation and CpG suppression
    • Cooper DN, Gerber-Huber S. DNA methylation and CpG suppression. Cell Differ 1985; 17:199-205.
    • (1985) Cell Differ , vol.17 , pp. 199-205
    • Cooper, D.N.1    Gerber-Huber, S.2
  • 33
    • 0023853921 scopus 로고
    • The CpG dinucleotide and human genetic disease
    • Cooper DN, Youssoufian H. The CpG dinucleotide and human genetic disease. Hum Genet 1988; 78:151-5.
    • (1988) Hum Genet , vol.78 , pp. 151-155
    • Cooper, D.N.1    Youssoufian, H.2
  • 36
    • 0031006058 scopus 로고    scopus 로고
    • Stalling of human methyltransferase at single-strand conformers from the Huntington's locus
    • Smith SS, Baker DJ. Stalling of human methyltransferase at single-strand conformers from the Huntington's locus. Biochem Biophys Res Commun 1997; 234:73-8.
    • (1997) Biochem Biophys Res Commun , vol.234 , pp. 73-78
    • Smith, S.S.1    Baker, D.J.2
  • 37
    • 0032498270 scopus 로고    scopus 로고
    • Stalling of human DNA (cytosine-5) methyltransferase at single-strand conformers from a site of dynamic mutation
    • Kho MR, Baker DJ, Laayoun A, Smith SS. Stalling of human DNA (cytosine-5) methyltransferase at single-strand conformers from a site of dynamic mutation. J Mol Biol 1998; 275:67-79.
    • (1998) J Mol Biol , vol.275 , pp. 67-79
    • Kho, M.R.1    Baker, D.J.2    Laayoun, A.3    Smith, S.S.4
  • 38
    • 0042831480 scopus 로고    scopus 로고
    • Methods for the design and analysis of oligodeoxynucleotide-based DNA (cytosine-5) methyltransferase inhibitors
    • Clark J, Shevchuk T, Kho MR, Smith SS. Methods for the design and analysis of oligodeoxynucleotide-based DNA (cytosine-5) methyltransferase inhibitors. Anal Biochem 2003; 321:50-64.
    • (2003) Anal Biochem , vol.321 , pp. 50-64
    • Clark, J.1    Shevchuk, T.2    Kho, M.R.3    Smith, S.S.4
  • 39
    • 0034623007 scopus 로고    scopus 로고
    • Gilbert's conjecture: The search for DNA (cytosine-5) demethylases and the emergence of new functions for eukaryotic DNA (cytosine-5) methyltransferases
    • Smith SS. Gilbert's conjecture: the search for DNA (cytosine-5) demethylases and the emergence of new functions for eukaryotic DNA (cytosine-5) methyltransferases. J Mol Biol 2000; 302:1-7.
    • (2000) J Mol Biol , vol.302 , pp. 1-7
    • Smith, S.S.1
  • 40
    • 85011937598 scopus 로고    scopus 로고
    • The Human DNA Methylone [Internet], Available from, FEB 05
    • The Human DNA Methylone [Internet]. San Diego Epigenome Center 2010; FEB 05. Available from: http://neomorph.salk.edu/human_methylome/.
    • San Diego Epigenome Center 2010
  • 42
    • 33745187115 scopus 로고    scopus 로고
    • Methylation-dependent fragment separation: Direct detection of DNA methylation by capillary electrophoresis of PCR products from bisulfite-converted genomic DNA
    • Boyd VL, Moody KI, Karger AE, Livak KJ, Zon G, Burns JW. Methylation-dependent fragment separation: Direct detection of DNA methylation by capillary electrophoresis of PCR products from bisulfite-converted genomic DNA. Anal Biochem 2006; 354:266-73.
    • (2006) Anal Biochem , vol.354 , pp. 266-273
    • Boyd, V.L.1    Moody, K.I.2    Karger, A.E.3    Livak, K.J.4    Zon, G.5    Burns, J.W.6
  • 43
    • 34250669653 scopus 로고    scopus 로고
    • Recovery of bisulfite-converted genomic sequences in the methylation-sensitive QPCR
    • Munson K, Clark J, Lamparska-Kupsik K, Smith SS. Recovery of bisulfite-converted genomic sequences in the methylation-sensitive QPCR. Nucleic Acids Research 2007; 35:2893-903.
    • (2007) Nucleic Acids Research , vol.35 , pp. 2893-2903
    • Munson, K.1    Clark, J.2    Lamparska-Kupsik, K.3    Smith, S.S.4
  • 44
    • 36749090553 scopus 로고    scopus 로고
    • Location, location, location: The cancer stem cell niche
    • Sneddon JB, Werb Z. Location, location, location: the cancer stem cell niche. Cell Stem Cell 2007; 1:607-11.
    • (2007) Cell Stem Cell , vol.1 , pp. 607-611
    • Sneddon, J.B.1    Werb, Z.2
  • 46
    • 61449322942 scopus 로고    scopus 로고
    • The MIRA method for DNA methylation analysis
    • Rauch TA, Pfeifer GP. The MIRA method for DNA methylation analysis. Methods Mol Biol 2009; 507:65-75.
    • (2009) Methods Mol Biol , vol.507 , pp. 65-75
    • Rauch, T.A.1    Pfeifer, G.P.2
  • 47
    • 33644853936 scopus 로고    scopus 로고
    • Combination of methylated-DNA precipitation and methylation-sensitive restriction enzymes (COMPARE-MS) for the rapid, sensitive and quantitative detection of DNA methylation
    • Yegnasubramanian S, Lin X, Haffner MC, DeMarzo AM, Nelson WG. Combination of methylated-DNA precipitation and methylation-sensitive restriction enzymes (COMPARE-MS) for the rapid, sensitive and quantitative detection of DNA methylation. Nucleic Acids Res 2006; 34:19.
    • (2006) Nucleic Acids Res , vol.34 , pp. 19
    • Yegnasubramanian, S.1    Lin, X.2    Haffner, M.C.3    Demarzo, A.M.4    Nelson, W.G.5
  • 48
    • 23044514626 scopus 로고    scopus 로고
    • Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
    • Weber M, Davies JJ, Wittig D, Oakeley EJ, Haase M, Lam WL, et al. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat Genet 2005; 37:853-62.
    • (2005) Nat Genet , vol.37 , pp. 853-862
    • Weber, M.1    Davies, J.J.2    Wittig, D.3    Oakeley, E.J.4    Haase, M.5    Lam, W.L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.