HIstome - A relational knowledgebase of human histone proteins and histone modifying enzymes

Nucleic Acids Research

Volumn 40, Issue D1, 2012, Pages

  Khare, Satyajeet P ^a,b   Habib, Farhat ^b   Sharma, Rahul ^b   Gadewal, Nikhil ^a   Gupta, Sanjay ^a   Galande, Sanjeev ^b  

^a CANCER RESEARCH INSTITUTE   (India)

^b INDIAN INSTITUTE OF SCIENCE EDUCATION AND RESEARCH   (India)

Author keywords

[No Author keywords available]

Indexed keywords

ENZYME; HISTONE; HISTONE MODIFYING ENZYME; UNCLASSIFIED DRUG;

ARTICLE; CATALYSIS; EPIGENETICS; HISTONE INFOBASE; INFORMATION SERVICE; INTERNET; PRIORITY JOURNAL; PROTEIN DATABASE; PROTEIN PROCESSING;

COMPUTER GRAPHICS; DATABASES, PROTEIN; ENZYMES; HISTONES; HUMANS; KNOWLEDGE BASES; PROTEIN PROCESSING, POST-TRANSLATIONAL; USER-COMPUTER INTERFACE;

EID: 84862156464     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr1125     Document Type: Article

References (22)

1. Attikum,H.V. and Gasser,S.M. (2009) Crosstalk between histone modiEcations during the DNA damage response. Trends Cell Biol., 19, 207-217.
2. Bannister,A.J. and Kouzarides,T. (2011) Regulation of chromatin by histone modifications. Cell Res., 21, 381-395.
3. Bonasio,R., Tu,S. and Reinberg,D. (2010) Molecular signals of epigenetic states. Science, 330, 612-616.
4. Chow,J. and Heard,E. (2009) X inactivation and the complexities of silencing a sex chromosome. Curr. Opin. Cell Biol., 21, 359-366.
5. Koina,E., Chaumeil,J., Greaves,I.K., Tremethick,D.J. and Graves,J.A. (2009) Specific patterns of histone marks accompany X chromosome inactivation in a marsupial. Chromosome Res., 17, 115-126.
6. Oliver,S.S. and Denu,J.M. (2011) Dynamic interplay between histone H3 modifications and protein interpreters: emerging evidence for a "histone language". Chembiochem., 12, 299-307.
7. Singh,R.K. and Gunjan,A. (2011) Histone tyrosine phosphorylation comes of age. Epigenetics, 6, 153-160.
8. Zhu,Q. and Wani,A.A. (2010) Histone modifications: crucial elements for damage response and chromatin restoration. J. Cell Physiol., 223, 283-288.
9. Chi,P., Allis,C.D. and Wang,G.G. (2011) Covalent histone modifications-miswritten, misinterpreted and mis-erased in human cancers. Nat. Rev. Cancer, 10, 457-469.
10. Zhang,Y., Lv,J., Liu,H., Zhu,J., Su,J., Wu,Q., Qi,Y., Wang,F. and Li,X. (2010) HHMD: the human histone modification database. Nucleic Acids Res., 38, D149-D154.
11. Mariño-Ramírez,L., Hsu,B., Baxevanis,A.D. and Landsman,D. (2006) The histone database: a comprehensive resource for histones and histone fold-containing proteins. Proteins, 62, 838-842. (Pubitemid 43364149)
12. Mario-Ramrez,L., Levine,K.M., Morales,M., Zhang,S., Moreland,R.T., Baxevanis,A.D. and Landsman,D. (2011) The histone database: an integrated resource for histones and histone fold-containing proteins. Database (in press).
13. Huang,H., Maertens,A.M., Hyland,E.M., Dai,J., Norris,A., Boeke,J.D. and Bader,J.S. (2009) HistoneHits: a database for histone mutations and their phenotypes. Genome Res., 19, 674-681.
14. O'Connor,T.R. and Wyrick,J.J. (2007) ChromatinDB: a database of genome-wide histone modification patterns for Saccharomyces cerevisiae. Bioinformatics, 23, 1828-1830. (Pubitemid 47250317)
15. Li,H., Xing,X., Ding,G., Li,Q., Wang,C., Xie,L., Zeng,R. and Li,Y. (2009) SysPTM: a systematic resource for proteomic research on post-translational modifications. Mol. Cell Proteomics, 8, 1839-1849.
16. Consortium, Uniprot. (2010) The universal protein resource (UniProt) in 2010. Nucleic Acids Res., 38, D142-D148.
17. Seal,R.L., Gordon,S.M., Lush,M.J., Wright,M.W. and Bruford,E.A. (2011) genenames.org: the HGNC resources in 2011. Nucleic Acids Res., 39, D514-D519.
18. Pontius,J.U., Wagner,L. and Schuler,G.D. (2003) UniGene: a unified view of the transcriptome. The NCBI Handbook. National Center for Biotechnology Information, Bethesda (MD).
19. Amberger,J., Bocchini,C.A., Scott,A.F. and Hamosh,A. (2009) McKusick's online Mendelian inheritance in man (OMIM). Nucleic Acids Res., 37, D793-D796.
20. Pruitt,K.D., Tatusova,T. and Maglott,D.R. (2007) NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res., 35, D61-D65. (Pubitemid 46056171)
21. Martín-Subero,J.I. and Esteller,M. (2011) Profiling epigenetic alterations in disease. Adv. Exp. Med. Biol., 711, 162-177.
22. Tarakhovsky,A. (2010) Tools and landscapes of epigenetics. Nat. Immunol., 11, 565-568.