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Volumn 389, Issue 6648, 1997, Pages 251-260

Crystal structure of the nucleosome core particle at 2.8 Å resolution

Author keywords

[No Author keywords available]

Indexed keywords

CELL NUCLEUS DNA; HISTONE;

EID: 1842411320     PISSN: 00280836     EISSN: None     Source Type: Journal    
DOI: 10.1038/38444     Document Type: Article
Times cited : (7375)

References (51)
  • 1
    • 0017331464 scopus 로고
    • Structure of chromatin
    • Kornberg, R. D. Structure of chromatin. Annu. Rev. Biochem. 46, 931-954 (1977).
    • (1977) Annu. Rev. Biochem. , vol.46 , pp. 931-954
    • Kornberg, R.D.1
  • 3
    • 0024489155 scopus 로고
    • Toward a unified model of chromatin folding
    • Widom, J. Toward a unified model of chromatin folding. Annu. Rev. Biophys. Biophys. Chem. 18, 365-395 (1989).
    • (1989) Annu. Rev. Biophys. Biophys. Chem. , vol.18 , pp. 365-395
    • Widom, J.1
  • 5
    • 0030570437 scopus 로고    scopus 로고
    • The effect of nucleosome phasing sequences and DNA topology on nucleosome spacing
    • Blank, T, A, & Becker, P. B. The effect of nucleosome phasing sequences and DNA topology on nucleosome spacing. J. Mol. Biol 260, 1-8 (1996).
    • (1996) J. Mol. Biol , vol.260 , pp. 1-8
    • Blank, T.A.1    Becker, P.B.2
  • 6
    • 0028388715 scopus 로고
    • Architectural variations of inducible eukaryotic promoters: Preset and remodeling chromatin structures
    • Wallrath, L. L.,Lu, Q., Granok, H. & Elgin, S. C. R. Architectural variations of inducible eukaryotic promoters: Preset and remodeling chromatin structures. BioEssays 16, 165-170 (1994).
    • (1994) BioEssays , vol.16 , pp. 165-170
    • Wallrath, L.L.1    Lu, Q.2    Granok, H.3    Elgin, S.C.R.4
  • 7
    • 0029928550 scopus 로고    scopus 로고
    • Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals
    • Flaus, A.,Luger, K., Tan, S. & Richmond, T. J. Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals. Proc. Natl Acad. Sci. USA 93, 1370-1375 (1996).
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 1370-1375
    • Flaus, A.1    Luger, K.2    Tan, S.3    Richmond, T.J.4
  • 8
    • 0023156456 scopus 로고
    • DNA bending and nucleosome positioning
    • Travers, A. A. DNA bending and nucleosome positioning. Trends Biochem. Sci. 12, 108-112 (1987).
    • (1987) Trends Biochem. Sci. , vol.12 , pp. 108-112
    • Travers, A.A.1
  • 9
    • 85081163116 scopus 로고    scopus 로고
    • Positioning and stability of nucleosomes on MMTV 3' LTR sequences
    • in the press
    • Flaus, A. & Richmond, T. J. Positioning and stability of nucleosomes on MMTV 3' LTR sequences. Mol Biol (in the press).
    • Mol Biol
    • Flaus, A.1    Richmond, T.J.2
  • 10
    • 0018509211 scopus 로고
    • Transcription by eukaryotic RNA polymerases A and B of chromatin assembled in vitro
    • Wasylyk, B. & Chambon, P. Transcription by eukaryotic RNA polymerases A and B of chromatin assembled in vitro. Eur. J. Biochem. 98, 317-327 (1979).
    • (1979) Eur. J. Biochem. , vol.98 , pp. 317-327
    • Wasylyk, B.1    Chambon, P.2
  • 11
    • 0025222518 scopus 로고
    • Histone function in transcription
    • Grunstein, M. Histone function in transcription. Annu. Rev. Cell Biol 6, 643-678 (1990).
    • (1990) Annu. Rev. Cell Biol , vol.6 , pp. 643-678
    • Grunstein, M.1
  • 12
    • 0028239906 scopus 로고
    • Role of chromatin structure in the regulation of transcription by RNA polymerase II
    • Paranjape, S. M.,Kamakaka, R. T. & Kadonaga, J. T. Role of chromatin structure in the regulation of transcription by RNA polymerase II. Annu. Rey. Biochem. 63, 265-297 (1994).
    • (1994) Annu. Rey. Biochem. , vol.63 , pp. 265-297
    • Paranjape, S.M.1    Kamakaka, R.T.2    Kadonaga, J.T.3
  • 13
    • 0029875865 scopus 로고    scopus 로고
    • A model for the cooperative binding of eukaryotic regulatory proteins to nucleosomal target sites
    • Polach, K. J. & Widom, J. A model for the cooperative binding of eukaryotic regulatory proteins to nucleosomal target sites. J. Mol Biol 258, 800-812 (1996).
    • (1996) J. Mol Biol , vol.258 , pp. 800-812
    • Polach, K.J.1    Widom, J.2
  • 14
    • 0030581149 scopus 로고    scopus 로고
    • Chromatin unfolds
    • Felsenfeld, G. Chromatin unfolds. Cell 86, 13-19 (1996).
    • (1996) Cell , vol.86 , pp. 13-19
    • Felsenfeld, G.1
  • 15
    • 0027459196 scopus 로고
    • A nucleosome-dependent static loop potentiates es trogen-regulated transcription from the Xenopus vitellogenin-B1 promoter in vitro
    • Schild, C.,Claret F. X., Wahli, W. & Wolffe, A. P. A nucleosome-dependent static loop potentiates es trogen-regulated transcription from the Xenopus vitellogenin-B1 promoter in vitro. EMBO J. 12, 423-433 (1993).
    • (1993) EMBO J. , vol.12 , pp. 423-433
    • Schild, C.1    Claret, F.X.2    Wahli, W.3    Wolffe, A.P.4
  • 16
    • 0029034248 scopus 로고
    • Hormone induces binding of receptors and transcription factors to a rearranged nucleosome on the MMTV promoter in vivo
    • Truss, M. et al. Hormone induces binding of receptors and transcription factors to a rearranged nucleosome on the MMTV promoter in vivo. EMBO J. 14, 1737-1751 (1995).
    • (1995) EMBO J. , vol.14 , pp. 1737-1751
    • Truss, M.1
  • 18
    • 0021760689 scopus 로고
    • Structure of the nucleosome core particle at 7 Å resolution
    • Richmond, T. J.,Finch, J. T, Rushton, B., Rhodes, D. & Klug, A. Structure of the nucleosome core particle at 7 Å resolution. Nature 311, 532-537 (1984).
    • (1984) Nature , vol.311 , pp. 532-537
    • Richmond, T.J.1    Finch, J.T.2    Rushton, B.3    Rhodes, D.4    Klug, A.5
  • 19
    • 1842317811 scopus 로고
    • X-ray and electron microscope studies on the nucleosome structure
    • Finch, J. T. et al. X-ray and electron microscope studies on the nucleosome structure. FEBS Lett. 51, 193-197 (1979).
    • (1979) FEBS Lett. , vol.51 , pp. 193-197
    • Finch, J.T.1
  • 20
    • 0025837183 scopus 로고
    • The nucleosomal core histone octamer at 3.1 A& resolution: A tripartite protein assembly and a left-handed superhelix
    • Arents, G.,Burlingame, R. W., Wang, B.-C, Love, W. E. & Moudrianakis, E. N, The nucleosomal core histone octamer at 3.1 A& resolution: A tripartite protein assembly and a left-handed superhelix, Proc. Natl Acad. Sci. USA 88, 10148-10152 (1991).
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 10148-10152
    • Arents, G.1    Burlingame, R.W.2    Wang, B.-C.3    Love, W.E.4    Moudrianakis, E.N.5
  • 22
    • 0023928212 scopus 로고
    • Crystals of a nucleosome core particle containing defined sequence DNA
    • Richmond, T. J.,Searles, M. A. & Simpson, R. T, Crystals of a nucleosome core particle containing defined sequence DNA. J. Mol Biol 199, 161-170 (1988).
    • (1988) J. Mol Biol , vol.199 , pp. 161-170
    • Richmond, T.J.1    Searles, M.A.2    Simpson, R.T.3
  • 23
    • 0031587289 scopus 로고    scopus 로고
    • Characterization of nucleosome core particles containing histone proteins made in bacteria
    • in the press
    • Luger, K.,Rechsteiner, T. J., Flaus, A., Waye, M. M. Y. & Richmond, T. J. Characterization of nucleosome core particles containing histone proteins made in bacteria. J. Mol Biol. (in the press).
    • J. Mol Biol.
    • Luger, K.1    Rechsteiner, T.J.2    Flaus, A.3    Waye, M.M.Y.4    Richmond, T.J.5
  • 25
    • 0030021179 scopus 로고    scopus 로고
    • X-ray diffraction analysis of crystals containing twofold symmetric nucleosome core particles
    • Harp, J. M. et al. X-ray diffraction analysis of crystals containing twofold symmetric nucleosome core particles. Acta Crystallogr. D52, 283-288 (1996).
    • (1996) Acta Crystallogr. , vol.D52 , pp. 283-288
    • Harp, J.M.1
  • 26
    • 0023001414 scopus 로고
    • Sequence periodicities in chicken nucleosome core DNA
    • Satchwell, S. C.,Drew, H. R. & Travers, A. A. Sequence periodicities in chicken nucleosome core DNA. J. Mol Biol. 191, 659-675 (1986).
    • (1986) J. Mol Biol. , vol.191 , pp. 659-675
    • Satchwell, S.C.1    Drew, H.R.2    Travers, A.A.3
  • 27
    • 0019488496 scopus 로고
    • Sequence-dependent helical periodicity of DNA
    • Rhodes, D. & Klug, A. Sequence-dependent helical periodicity of DNA. Nature 292, 378-380 (1981).
    • (1981) Nature , vol.292 , pp. 378-380
    • Rhodes, D.1    Klug, A.2
  • 29
    • 0002524447 scopus 로고
    • eds Cozzarelli, N. R. & Wang, J. C Cold Spring Harbor Press, Cold Spring Harbor, New York
    • Travers, A. A. & Klug, A. in DNA Topology and its Biological Effects (eds Cozzarelli, N. R. & Wang, J. C) 57-106 (Cold Spring Harbor Press, Cold Spring Harbor, New York, 1990).
    • (1990) DNA Topology and Its Biological Effects , pp. 57-106
    • Travers, A.A.1    Klug, A.2
  • 30
    • 0026696624 scopus 로고
    • Nucleosomes, DNA-binding proteins, and DNA sequence modulate retroviral integration target site selection
    • Pryciak, P. M. & Varmus, H. E. Nucleosomes, DNA-binding proteins, and DNA sequence modulate retroviral integration target site selection. Cell 69, 769-780 (1992).
    • (1992) Cell , vol.69 , pp. 769-780
    • Pryciak, P.M.1    Varmus, H.E.2
  • 31
    • 0028264042 scopus 로고
    • Human immunodeficiency virus integrase directs integration to sites of severe DNA distortion within the nucleosome core
    • Prass, D.,Bushmann, F. D. & Wolffe, A. P. Human immunodeficiency virus integrase directs integration to sites of severe DNA distortion within the nucleosome core. Proc. Natl Acad. Sci. USA 91, 5913-5917 (1994).
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 5913-5917
    • Prass, D.1    Bushmann, F.D.2    Wolffe, A.P.3
  • 32
    • 0028791330 scopus 로고
    • Mechanism of protein access to specific DNA sequences in chromatin: A dynamic equilibrium model for gene regulation
    • Polach, K. J. & Widom, J. Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation. J. Mol. Biol 254, 130-149 (1995).
    • (1995) J. Mol. Biol , vol.254 , pp. 130-149
    • Polach, K.J.1    Widom, J.2
  • 33
    • 0028850059 scopus 로고
    • Overcoming a nucleosomal barrier to transcription
    • Studitsky, V. M.,Clark, D. J. & Felsenfeld, G. Overcoming a nucleosomal barrier to transcription. Cell 83, 19-27 (1995).
    • (1995) Cell , vol.83 , pp. 19-27
    • Studitsky, V.M.1    Clark, D.J.2    Felsenfeld, G.3
  • 34
    • 0027068143 scopus 로고
    • Evidence that SNF2/SW12 and SNF5 activate transcription in yeast by altering chromatin structure
    • Hirschhorn, J. N.,Brown, S. A., Clark, C. D. & Winston, E Evidence that SNF2/SW12 and SNF5 activate transcription in yeast by altering chromatin structure. Genes Dev. 6, 2288-2298 (1992).
    • (1992) Genes Dev. , vol.6 , pp. 2288-2298
    • Hirschhorn, J.N.1    Brown, S.A.2    Clark, C.D.3    Winston, E.4
  • 35
    • 0028801404 scopus 로고
    • Amino acid substitutions in the structured domains of histones H3 and H4 partially relieve the requirement of the yeast SWI/SNF complex for transcription
    • Kruger, W. et al Amino acid substitutions in the structured domains of histones H3 and H4 partially relieve the requirement of the yeast SWI/SNF complex for transcription. Genes Dev. 9, 2770-2779 (1995).
    • (1995) Genes Dev. , vol.9 , pp. 2770-2779
    • Kruger, W.1
  • 36
    • 0000878535 scopus 로고
    • Solenoidal model for superstructure in chromatin
    • Finch, J. T. & Klug, A. Solenoidal model for superstructure in chromatin. Proc. Natl Acad. Sci. USA 73, 1897-1901 (1976).
    • (1976) Proc. Natl Acad. Sci. USA , vol.73 , pp. 1897-1901
    • Finch, J.T.1    Klug, A.2
  • 37
    • 0018581187 scopus 로고
    • Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin
    • Thoma, F.,Koller, T. & Klug, A. Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin. J. Cell Biol 83, 403-427 (1979).
    • (1979) J. Cell Biol , vol.83 , pp. 403-427
    • Thoma, F.1    Koller, T.2    Klug, A.3
  • 38
    • 0022273023 scopus 로고
    • Structure of the 300 Å chromatin filament: X-ray diffraction from oriented samples
    • Widom, J. & Klug, A. Structure of the 300 Å chromatin filament: X-ray diffraction from oriented samples. Cell 43, 207-213 (1985).
    • (1985) Cell , vol.43 , pp. 207-213
    • Widom, J.1    Klug, A.2
  • 39
    • 0028314834 scopus 로고
    • Histone HI is located in the interior of the chromatin 30-nm filament
    • Graziano, V.,Gerchman, S. E. Schneider, D. K. & Ramakrishnan, V. Histone HI is located in the interior of the chromatin 30-nm filament. Nature 368, 351-354 (1994).
    • (1994) Nature , vol.368 , pp. 351-354
    • Graziano, V.1    Gerchman, S.E.2    Schneider, D.K.3    Ramakrishnan, V.4
  • 40
    • 0028919756 scopus 로고
    • Histone H3 and H4 Ntermini interact with SIR3 and SIR4 proteins: A molecular model for the formation of heterochromatin in yeast
    • Hecht, A.,Laroche, T., Strahl-Bolsinger, S., Gasser, S. M. & Grunstein, M. Histone H3 and H4 Ntermini interact with SIR3 and SIR4 proteins: A molecular model for the formation of heterochromatin in yeast Cell 80, 583-592 (1995).
    • (1995) Cell , vol.80 , pp. 583-592
    • Hecht, A.1    Laroche, T.2    Strahl-Bolsinger, S.3    Gasser, S.M.4    Grunstein, M.5
  • 41
    • 0029924193 scopus 로고    scopus 로고
    • NMR structure of HMfB from the hyperthermophile, Methanothermus fervidus, confirms that this archaeal protein is a histone
    • Stanch, M. R.,Sandman, K., Reeve, J. N. & Summers, M. F NMR structure of HMfB from the hyperthermophile, Methanothermus fervidus, confirms that this archaeal protein is a histone. J. Mol Biol 255, 187-203 (1996).
    • (1996) J. Mol Biol , vol.255 , pp. 187-203
    • Stanch, M.R.1    Sandman, K.2    Reeve, J.N.3    Summers, M.F.4
  • 42
    • 0029869460 scopus 로고    scopus 로고
    • Structural similarity between TAFs and the heterotetrameric core of the histone octamer
    • Xie, X. et al Structural similarity between TAFs and the heterotetrameric core of the histone octamer. Nature 380, 316-322 (1996).
    • (1996) Nature , vol.380 , pp. 316-322
    • Xie, X.1
  • 43
    • 0344566388 scopus 로고
    • Characterization of a cloned repetitive DNA sequence concentrated on the human X chromosome
    • Yang, T. P.,Hansen, S. K., Oishi, K. K., Ryder, O. A. & Hamkalo, B. A. Characterization of a cloned repetitive DNA sequence concentrated on the human X chromosome. Proc Natl Acad. Sci. USA 79, 6593-6597 (1982).
    • (1982) Proc Natl Acad. Sci. USA , vol.79 , pp. 6593-6597
    • Yang, T.P.1    Hansen, S.K.2    Oishi, K.K.3    Ryder, O.A.4    Hamkalo, B.A.5
  • 44
    • 0023162376 scopus 로고
    • Multiple heavy-atom reagents for macromolecular X-ray structure determination. Application to the nucleosome core particle
    • O'Halloran, T. V.,Lippard, S. J., Richmond, T. J. & Klug, A. Multiple heavy-atom reagents for macromolecular X-ray structure determination. Application to the nucleosome core particle. J. Mol. Biol. 194, 705-712 (1987),
    • (1987) J. Mol. Biol. , vol.194 , pp. 705-712
    • O'Halloran, T.V.1    Lippard, S.J.2    Richmond, T.J.3    Klug, A.4
  • 45
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones, T. A.,Zou, J. Y., Cowan, S. W. & Kjeldgaard, M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr, A 47, 110-119 (1991).
    • (1991) Acta Crystallogr, A , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 48
    • 0026319199 scopus 로고
    • Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
    • Nkholls, A.,Sharp, K. & Honig, B. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11, 281-296 (1991).
    • (1991) Proteins , vol.11 , pp. 281-296
    • Nkholls, A.1    Sharp, K.2    Honig, B.3
  • 49
    • 84944812409 scopus 로고
    • Improved Fourier coefficients for maps using phases from partial structures with errors
    • Read, R. J. Improved Fourier coefficients for maps using phases from partial structures with errors. Acta Crystallogr. A 42, 140-149 (1986).
    • (1986) Acta Crystallogr. A , vol.42 , pp. 140-149
    • Read, R.J.1
  • 50
    • 0021266689 scopus 로고
    • Proteases as structural probes for chromatin: The domain structure of histones
    • Böhm, L & Crane-Robinson, C. Proteases as structural probes for chromatin: the domain structure of histones. Biosci. Rep. 4, 365-386 (1984).
    • (1984) Biosci. Rep. , vol.4 , pp. 365-386
    • Böhm, L.1    Crane-Robinson, C.2
  • 51
    • 0017601447 scopus 로고
    • Isopeptide linkage between nonhistone and histone 2A polypeptides of chromosomal conjugated-protein A24
    • Goldknopf, I. L. & Busch, H. Isopeptide linkage between nonhistone and histone 2A polypeptides of chromosomal conjugated-protein A24. Proc. Natl Acad, Sci. USA 74, 864-868 (1977).
    • (1977) Proc. Natl Acad, Sci. USA , vol.74 , pp. 864-868
    • Goldknopf, I.L.1    Busch, H.2


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