-
1
-
-
36749088906
-
Determining the architectures of macromolecular assemblies
-
Alber F., et al. Determining the architectures of macromolecular assemblies. Nature 2007, 450:683-694.
-
(2007)
Nature
, vol.450
, pp. 683-694
-
-
Alber, F.1
-
2
-
-
36749045172
-
The molecular architecture of the nuclear pore complex
-
Alber F., et al. The molecular architecture of the nuclear pore complex. Nature 2007, 450:695-701.
-
(2007)
Nature
, vol.450
, pp. 695-701
-
-
Alber, F.1
-
3
-
-
18144370437
-
Estimating alignment errors in sets of 2-D images
-
Baldwin P.R., Penczek P.A. Estimating alignment errors in sets of 2-D images. J. Struct. Biol. 2005, 150:211-225.
-
(2005)
J. Struct. Biol.
, vol.150
, pp. 211-225
-
-
Baldwin, P.R.1
Penczek, P.A.2
-
4
-
-
33845302993
-
SPIRE: The SPIDER reconstruction engine
-
Baxter W.T., et al. SPIRE: The SPIDER reconstruction engine. J. Struct. Biol. 2007, 157:56-63.
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 56-63
-
-
Baxter, W.T.1
-
5
-
-
63649154791
-
Determination of signal-to-noise ratios and spectral SNRs in cryo-EM low-dose imaging of molecules
-
Baxter W.T., et al. Determination of signal-to-noise ratios and spectral SNRs in cryo-EM low-dose imaging of molecules. J. Struct. Biol. 2009, 166:126-132.
-
(2009)
J. Struct. Biol.
, vol.166
, pp. 126-132
-
-
Baxter, W.T.1
-
6
-
-
0028659872
-
Analysis of transient structures by cryo-microscopy combined with rapid mixing of spray droplets
-
Berriman J., Unwin N. Analysis of transient structures by cryo-microscopy combined with rapid mixing of spray droplets. Ultramicroscopy 1994, 56:241-252.
-
(1994)
Ultramicroscopy
, vol.56
, pp. 241-252
-
-
Berriman, J.1
Unwin, N.2
-
7
-
-
0031942977
-
Multivariate statistical methods for the analysis of microscope image series: Applications in materials science
-
Bonnet N. Multivariate statistical methods for the analysis of microscope image series: Applications in materials science. J. Microsc. 1998, 190:2-18.
-
(1998)
J. Microsc.
, vol.190
, pp. 2-18
-
-
Bonnet, N.1
-
8
-
-
23044520937
-
Artificial intelligence and pattern recognition techniques in microscope image processing and analysis
-
Bonnet N. Artificial intelligence and pattern recognition techniques in microscope image processing and analysis. Adv. Imaging Electron Phys. 2000, 114:1-77.
-
(2000)
Adv. Imaging Electron Phys.
, vol.114
, pp. 1-77
-
-
Bonnet, N.1
-
9
-
-
0025364361
-
Fuzzy sets-based classification of electron microscopy images of biological macromolecules with an application to ribosomal particles
-
Carazo J.M., et al. Fuzzy sets-based classification of electron microscopy images of biological macromolecules with an application to ribosomal particles. J. Microsc. 1990, 157:187-203.
-
(1990)
J. Microsc.
, vol.157
, pp. 187-203
-
-
Carazo, J.M.1
-
11
-
-
0034517231
-
Leginon: An automated system for acquisition of images from vitreous ice specimens
-
Carragher B., et al. Leginon: An automated system for acquisition of images from vitreous ice specimens. J. Struct. Biol. 2000, 132:33-45.
-
(2000)
J. Struct. Biol.
, vol.132
, pp. 33-45
-
-
Carragher, B.1
-
12
-
-
33845286204
-
Implementation and performance evaluation of reconstruction algorithms on graphics processors
-
Castano Diez D., et al. Implementation and performance evaluation of reconstruction algorithms on graphics processors. J. Struct. Biol. 2007, 157:288-295.
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 288-295
-
-
Castano Diez, D.1
-
13
-
-
51549091567
-
Performance evaluation of image processing algorithms on the GPU
-
Castano-Diez D., et al. Performance evaluation of image processing algorithms on the GPU. J. Struct. Biol. 2008, 164:153-160.
-
(2008)
J. Struct. Biol.
, vol.164
, pp. 153-160
-
-
Castano-Diez, D.1
-
14
-
-
33845449481
-
SIGNATURE: A single-particle selection system for molecular electron microscopy
-
Chen J.Z., Grigorieff N. SIGNATURE: A single-particle selection system for molecular electron microscopy. J. Struct. Biol. 2007, 157:168-173.
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 168-173
-
-
Chen, J.Z.1
Grigorieff, N.2
-
15
-
-
67649807795
-
Molecular interactions in rotavirus assembly and uncoating seen by high-resolution cryo-EM
-
Chen J.Z., et al. Molecular interactions in rotavirus assembly and uncoating seen by high-resolution cryo-EM. Proc. Natl. Acad. Sci. USA 2009, 106:10644-10648.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 10644-10648
-
-
Chen, J.Z.1
-
16
-
-
1342264310
-
Structure of the human transferrin receptor-transferrin complex
-
Cheng Y., et al. Structure of the human transferrin receptor-transferrin complex. Cell 2004, 116:565-576.
-
(2004)
Cell
, vol.116
, pp. 565-576
-
-
Cheng, Y.1
-
17
-
-
29444439322
-
Single particle reconstructions of the transferrin-transferrin receptor complex obtained with different specimen preparation techniques
-
Cheng Y., et al. Single particle reconstructions of the transferrin-transferrin receptor complex obtained with different specimen preparation techniques. J. Mol. Biol. 2006, 355:1048-1065.
-
(2006)
J. Mol. Biol.
, vol.355
, pp. 1048-1065
-
-
Cheng, Y.1
-
18
-
-
36049014442
-
Towards automated screening of two-dimensional crystals
-
Cheng A., et al. Towards automated screening of two-dimensional crystals. J. Struct. Biol. 2007, 160:324-331.
-
(2007)
J. Struct. Biol.
, vol.160
, pp. 324-331
-
-
Cheng, A.1
-
19
-
-
77950456761
-
4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement
-
Cong Y., et al. 4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement. Proc. Natl. Acad. Sci. USA 2010, 107:4967-4972.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 4967-4972
-
-
Cong, Y.1
-
20
-
-
71849108172
-
Automatic acquisition and image analysis of 2D crystals
-
Coudray N., et al. Automatic acquisition and image analysis of 2D crystals. Micros. Today 2008, 16:48-49.
-
(2008)
Micros. Today
, vol.16
, pp. 48-49
-
-
Coudray, N.1
-
22
-
-
0014930077
-
Three dimensional reconstructions of spherical viruses by Fourier synthesis from electron micrographs
-
Crowther R.A., et al. Three dimensional reconstructions of spherical viruses by Fourier synthesis from electron micrographs. Nature 1996, 226:421-425.
-
(1996)
Nature
, vol.226
, pp. 421-425
-
-
Crowther, R.A.1
-
23
-
-
0029975085
-
MRC image processing programs
-
Crowther R.A., et al. MRC image processing programs. J. Struct. Biol. 1970, 116:9-16.
-
(1970)
J. Struct. Biol.
, vol.116
, pp. 9-16
-
-
Crowther, R.A.1
-
24
-
-
0034903709
-
Transmission electron microscopy with Zernike phase plate
-
Danev R., Nagayama K. Transmission electron microscopy with Zernike phase plate. Ultramicroscopy 2001, 88:243-252.
-
(2001)
Ultramicroscopy
, vol.88
, pp. 243-252
-
-
Danev, R.1
Nagayama, K.2
-
25
-
-
0026535891
-
Towards automatic electron tomography
-
Dierksen K., et al. Towards automatic electron tomography. Ultramicroscopy 1992, 40:71-87.
-
(1992)
Ultramicroscopy
, vol.40
, pp. 71-87
-
-
Dierksen, K.1
-
26
-
-
0027541315
-
Towards automatic electron tomography 2. Implementation of autofocus and low-dose procedures
-
Dierksen K., et al. Towards automatic electron tomography 2. Implementation of autofocus and low-dose procedures. Ultramicroscopy 1993, 49:109-120.
-
(1993)
Ultramicroscopy
, vol.49
, pp. 109-120
-
-
Dierksen, K.1
-
27
-
-
34547142511
-
A simple method for obtaining perforated supporting membranes for electron microscopy
-
Drahos V., Delong A. A simple method for obtaining perforated supporting membranes for electron microscopy. Nature 1960, 186:104.
-
(1960)
Nature
, vol.186
, pp. 104
-
-
Drahos, V.1
Delong, A.2
-
28
-
-
84985217492
-
Electron microscopy of frozen water and aqueous solutions
-
Dubochet J., et al. Electron microscopy of frozen water and aqueous solutions. J. Microsc. 1982, 128:219-237.
-
(1982)
J. Microsc.
, vol.128
, pp. 219-237
-
-
Dubochet, J.1
-
29
-
-
0024007766
-
Cryo-electron microscopy of vitrified specimens
-
Dubochet J., et al. Cryo-electron microscopy of vitrified specimens. Q. Rev. Biophys. 1988, 21:129-228.
-
(1988)
Q. Rev. Biophys.
, vol.21
, pp. 129-228
-
-
Dubochet, J.1
-
30
-
-
0032126299
-
Perforated support foils with re-defined hole size, shape and arrangement
-
Ermantraut E., et al. Perforated support foils with re-defined hole size, shape and arrangement. Ultramicroscopy 1998, 74:75-81.
-
(1998)
Ultramicroscopy
, vol.74
, pp. 75-81
-
-
Ermantraut, E.1
-
31
-
-
0000112217
-
A posteriori determination of relative projection directions of arbitrarily oriented macromolecules
-
Farrow N.A., Ottensmeyer F.P. A posteriori determination of relative projection directions of arbitrarily oriented macromolecules. J. Opt. Soc. Am. A 1992, 9:1749-1760.
-
(1992)
J. Opt. Soc. Am. A
, vol.9
, pp. 1749-1760
-
-
Farrow, N.A.1
Ottensmeyer, F.P.2
-
33
-
-
0036425877
-
A relational database for cryoEM: Experience at one year and 50000 images
-
Fellmann D., et al. A relational database for cryoEM: Experience at one year and 50000 images. J. Struct. Biol. 2002, 137:273-282.
-
(2002)
J. Struct. Biol.
, vol.137
, pp. 273-282
-
-
Fellmann, D.1
-
34
-
-
0343052627
-
A spectral estimation approach to contrast transfer function detection in electron microscopy
-
Fernandez J.J., et al. A spectral estimation approach to contrast transfer function detection in electron microscopy. Ultramicroscopy 1997, 68:267-295.
-
(1997)
Ultramicroscopy
, vol.68
, pp. 267-295
-
-
Fernandez, J.J.1
-
35
-
-
33646784015
-
CTF determination and correction in electron cryotomography
-
Fernandez J.J., et al. CTF determination and correction in electron cryotomography. Ultramicroscopy 2006, 106:587-596.
-
(2006)
Ultramicroscopy
, vol.106
, pp. 587-596
-
-
Fernandez, J.J.1
-
36
-
-
51549084591
-
Sharpening high resolution information in single particle electron cryomicroscopy
-
Fernandez J.J., et al. Sharpening high resolution information in single particle electron cryomicroscopy. J. Struct. Biol. 2008, 164:170-175.
-
(2008)
J. Struct. Biol.
, vol.164
, pp. 170-175
-
-
Fernandez, J.J.1
-
39
-
-
77449108419
-
Single-particle reconstruction of biological macromolecules in electron microscopy-30years
-
Frank J. Single-particle reconstruction of biological macromolecules in electron microscopy-30years. Q. Rev. Biophys. 2009, 42:139-158.
-
(2009)
Q. Rev. Biophys.
, vol.42
, pp. 139-158
-
-
Frank, J.1
-
40
-
-
0020484108
-
Correspondence analysis of aligned images of biological particles
-
Frank J., van Heel M. Correspondence analysis of aligned images of biological particles. J. Mol. Biol. 1982, 161:134-137.
-
(1982)
J. Mol. Biol.
, vol.161
, pp. 134-137
-
-
Frank, J.1
van Heel, M.2
-
41
-
-
0019802812
-
Computer averaging of electron micrographs of 40S ribosomal subunits
-
Frank J., et al. Computer averaging of electron micrographs of 40S ribosomal subunits. Science 1981, 214:1353-1355.
-
(1981)
Science
, vol.214
, pp. 1353-1355
-
-
Frank, J.1
-
42
-
-
84985224954
-
Classification of images of biomolecular assemblies: A study of ribosomes and ribosomal subunits of Escherichia coli
-
Frank J., et al. Classification of images of biomolecular assemblies: A study of ribosomes and ribosomal subunits of Escherichia coli. J. Microsc. 1988, 150:99-115.
-
(1988)
J. Microsc.
, vol.150
, pp. 99-115
-
-
Frank, J.1
-
43
-
-
0029975088
-
SPIDER and WEB: Processing and visualization of images in 3D electron microscopy and related fields
-
Frank J., et al. SPIDER and WEB: Processing and visualization of images in 3D electron microscopy and related fields. J. Struct. Biol. 1996, 116:190-199.
-
(1996)
J. Struct. Biol.
, vol.116
, pp. 190-199
-
-
Frank, J.1
-
45
-
-
33847172327
-
Clustering by passing messages between data points
-
Frey B.J., Dueck D. Clustering by passing messages between data points. Science 2007, 315:972-976.
-
(2007)
Science
, vol.315
, pp. 972-976
-
-
Frey, B.J.1
Dueck, D.2
-
46
-
-
0030012313
-
Toward fully automated high-resolution electron tomography
-
Fung J.C., et al. Toward fully automated high-resolution electron tomography. J. Struct. Biol. 1996, 116:181-189.
-
(1996)
J. Struct. Biol.
, vol.116
, pp. 181-189
-
-
Fung, J.C.1
-
47
-
-
38549103141
-
The structure of the C-terminal actin-binding domain of talin
-
Gingras A.R., et al. The structure of the C-terminal actin-binding domain of talin. EMBO J. 2008, 27:458-469.
-
(2008)
EMBO J.
, vol.27
, pp. 458-469
-
-
Gingras, A.R.1
-
48
-
-
0001224159
-
Determining the spatial orientation of arbitrarily arranged particles given their projections
-
Goncharov A., Vainshtein B.K. Determining the spatial orientation of arbitrarily arranged particles given their projections. Dokl. Acad. Sci. USSR 1986, 287:1131-1134.
-
(1986)
Dokl. Acad. Sci. USSR
, vol.287
, pp. 1131-1134
-
-
Goncharov, A.1
Vainshtein, B.K.2
-
50
-
-
33845348200
-
FREALIGN: High-resolution refinement of single particle structures
-
Grigorieff N. FREALIGN: High-resolution refinement of single particle structures. J. Struct. Biol. 2007, 157:117-125.
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 117-125
-
-
Grigorieff, N.1
-
51
-
-
0347447280
-
A two step approach for semi-automated particle selection from low contrast cryo-electron micrographs
-
Hall R.J., Patwardhan A. A two step approach for semi-automated particle selection from low contrast cryo-electron micrographs. J. Struct. Biol. 2004, 145:19-28.
-
(2004)
J. Struct. Biol.
, vol.145
, pp. 19-28
-
-
Hall, R.J.1
Patwardhan, A.2
-
52
-
-
0000313739
-
Exact filters for general geometry 3-dimensional reconstruction
-
Harauz G., van Heel M. Exact filters for general geometry 3-dimensional reconstruction. Optik 1986, 73:146-156.
-
(1986)
Optik
, vol.73
, pp. 146-156
-
-
Harauz, G.1
van Heel, M.2
-
53
-
-
0037751777
-
Holey films for electron microscopy
-
Harris W.J. Holey films for electron microscopy. Nature 1962, 196:499-500.
-
(1962)
Nature
, vol.196
, pp. 499-500
-
-
Harris, W.J.1
-
54
-
-
0025292355
-
Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy
-
Henderson R., et al. Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy. J. Mol. Biol. 1990, 213:899-929.
-
(1990)
J. Mol. Biol.
, vol.213
, pp. 899-929
-
-
Henderson, R.1
-
55
-
-
0035783171
-
Bsoft: Image and molecular processing in electron microscopy
-
Heymann J.B. Bsoft: Image and molecular processing in electron microscopy. J. Struct. Biol. 2001, 133:156-169.
-
(2001)
J. Struct. Biol.
, vol.133
, pp. 156-169
-
-
Heymann, J.B.1
-
56
-
-
33845336533
-
Bsoft: Image processing and molecular modeling for electron microscopy
-
Heymann J.B., Belnap D.M. Bsoft: Image processing and molecular modeling for electron microscopy. J. Struct. Biol. 2007, 157:3-18.
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 3-18
-
-
Heymann, J.B.1
Belnap, D.M.2
-
57
-
-
40649123787
-
Computational resources for cryo-electron tomography in Bsoft
-
Heymann J.B., et al. Computational resources for cryo-electron tomography in Bsoft. J. Struct. Biol. 2008, 161:232-242.
-
(2008)
J. Struct. Biol.
, vol.161
, pp. 232-242
-
-
Heymann, J.B.1
-
58
-
-
33845296470
-
SPARX, a new environment for Cryo-EM image processing
-
Hohn M., et al. SPARX, a new environment for Cryo-EM image processing. J. Struct. Biol. 2007, 157:47-55.
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 47-55
-
-
Hohn, M.1
-
59
-
-
77953600862
-
Automated electron microscopy for evaluating two-dimensional crystallization of membrane proteins
-
(submitted)
-
Hu M., et al. Automated electron microscopy for evaluating two-dimensional crystallization of membrane proteins. J. Struct. Biol. 2010, (submitted).
-
(2010)
J. Struct. Biol.
-
-
Hu, M.1
-
60
-
-
0347447278
-
Application of template matching technique to particle detection in electron micrographs
-
Huang Z., Penczek P.A. Application of template matching technique to particle detection in electron micrographs. J. Struct. Biol. 2004, 145:29-40.
-
(2004)
J. Struct. Biol.
, vol.145
, pp. 29-40
-
-
Huang, Z.1
Penczek, P.A.2
-
61
-
-
0344120730
-
Automated determination of parameters describing power spectra of micrograph images in electron microscopy
-
Huang Z., et al. Automated determination of parameters describing power spectra of micrograph images in electron microscopy. J. Struct. Biol. 2003, 144:79-94.
-
(2003)
J. Struct. Biol.
, vol.144
, pp. 79-94
-
-
Huang, Z.1
-
62
-
-
76749133629
-
The 2DX robot: A membrane protein 2D crystallization Swiss Army knife
-
Iacovache I., et al. The 2DX robot: A membrane protein 2D crystallization Swiss Army knife. J. Struct. Biol. 2010, 169:370-378.
-
(2010)
J. Struct. Biol.
, vol.169
, pp. 370-378
-
-
Iacovache, I.1
-
63
-
-
39849102970
-
Backbone structure of the infectious epsilon15 virus capsid revealed by electron cryomicroscopy
-
Jiang W., et al. Backbone structure of the infectious epsilon15 virus capsid revealed by electron cryomicroscopy. Nature 2008, 451:1130-1134.
-
(2008)
Nature
, vol.451
, pp. 1130-1134
-
-
Jiang, W.1
-
64
-
-
0036289516
-
Efficiency of 2D alignment methods
-
Joyeux L., Penczek P.A. Efficiency of 2D alignment methods. Ultramicroscopy 2002, 92:33-46.
-
(2002)
Ultramicroscopy
, vol.92
, pp. 33-46
-
-
Joyeux, L.1
Penczek, P.A.2
-
65
-
-
67650345813
-
High-resolution structural analysis of a DNA nanostructure by cryoEM
-
Kato T., et al. High-resolution structural analysis of a DNA nanostructure by cryoEM. Nano Lett. 2009, 9:2747-2750.
-
(2009)
Nano Lett.
, vol.9
, pp. 2747-2750
-
-
Kato, T.1
-
66
-
-
50049098811
-
The Affinity Grid: A pre-fabricated EM grid for monolayer purification
-
Kelly D.F., et al. The Affinity Grid: A pre-fabricated EM grid for monolayer purification. J. Mol. Biol. 2008, 382:423-433.
-
(2008)
J. Mol. Biol.
, vol.382
, pp. 423-433
-
-
Kelly, D.F.1
-
67
-
-
0037411732
-
Practical procedure for coma-free alignment using caustic figure
-
Kimoto K., et al. Practical procedure for coma-free alignment using caustic figure. Ultramicroscopy 2003, 96:219-227.
-
(2003)
Ultramicroscopy
, vol.96
, pp. 219-227
-
-
Kimoto, K.1
-
68
-
-
0031413608
-
EmScope: A tool kit for control and automation of a remote electron microscope
-
Kisseberth N., et al. emScope: A tool kit for control and automation of a remote electron microscope. J. Struct. Biol. 1997, 120:309-319.
-
(1997)
J. Struct. Biol.
, vol.120
, pp. 309-319
-
-
Kisseberth, N.1
-
69
-
-
0026816671
-
Practical autoalignment of transmission electron microscopes
-
Koster A.J., de Ruijter W.J. Practical autoalignment of transmission electron microscopes. Ultramicroscopy 1992, 40:89-107.
-
(1992)
Ultramicroscopy
, vol.40
, pp. 89-107
-
-
Koster, A.J.1
de Ruijter, W.J.2
-
70
-
-
0023181755
-
An autofocus method for a TEM
-
Koster A.J., et al. An autofocus method for a TEM. Ultramicroscopy 1987, 21:209-222.
-
(1987)
Ultramicroscopy
, vol.21
, pp. 209-222
-
-
Koster, A.J.1
-
71
-
-
0344626772
-
Two-dimensional crystallization of membrane proteins: A practical guide
-
Academic Press, San Diego, C. Hunte (Ed.)
-
Kühlbrandt W. Two-dimensional crystallization of membrane proteins: A practical guide. Membrane Protein Purification and Crystallization: A Practical Guide 2003, 253-284. Academic Press, San Diego. C. Hunte (Ed.).
-
(2003)
Membrane Protein Purification and Crystallization: A Practical Guide
, pp. 253-284
-
-
Kühlbrandt, W.1
-
72
-
-
0017127543
-
Ribosome structure determined by electron microscopy of Escherichia coli small subunits, large subunits and monomeric ribosomes
-
Lake J.A. Ribosome structure determined by electron microscopy of Escherichia coli small subunits, large subunits and monomeric ribosomes. J. Mol. Biol. 1976, 105:131-139.
-
(1976)
J. Mol. Biol.
, vol.105
, pp. 131-139
-
-
Lake, J.A.1
-
73
-
-
60649103238
-
Appion: An integrated, database-driven pipeline to facilitate EM image processing
-
Lander G.C., et al. Appion: An integrated, database-driven pipeline to facilitate EM image processing. J. Struct. Biol. 2009, 166:95-102.
-
(2009)
J. Struct. Biol.
, vol.166
, pp. 95-102
-
-
Lander, G.C.1
-
74
-
-
34248594947
-
Automated 100-position specimen loader and image acquisition system for transmission electron microscopy
-
Lefman J., et al. Automated 100-position specimen loader and image acquisition system for transmission electron microscopy. J. Struct. Biol. 2007, 158:318-326.
-
(2007)
J. Struct. Biol.
, vol.158
, pp. 318-326
-
-
Lefman, J.1
-
75
-
-
15444370401
-
Automated acquisition of cryo-electron micrographs for single particle reconstruction on an FEI Tecnai electron microscope
-
Lei J., Frank J. Automated acquisition of cryo-electron micrographs for single particle reconstruction on an FEI Tecnai electron microscope. J. Struct. Biol. 2005, 150:69-80.
-
(2005)
J. Struct. Biol.
, vol.150
, pp. 69-80
-
-
Lei, J.1
Frank, J.2
-
76
-
-
32544460568
-
The orthogonal tilt reconstruction method: An approach to generating single-class volumes with no missing cone for ab initio reconstruction of asymmetric particles
-
Leschziner A.E., Nogales E. The orthogonal tilt reconstruction method: An approach to generating single-class volumes with no missing cone for ab initio reconstruction of asymmetric particles. J. Struct. Biol. 2006, 153:284-299.
-
(2006)
J. Struct. Biol.
, vol.153
, pp. 284-299
-
-
Leschziner, A.E.1
Nogales, E.2
-
77
-
-
34548643898
-
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm
-
Liu X., et al. Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. J. Struct. Biol. 2007, 160:11-27.
-
(2007)
J. Struct. Biol.
, vol.160
, pp. 11-27
-
-
Liu, X.1
-
78
-
-
70350234771
-
Monolithic microfluidic mixing-spraying devices for time-resolved cryo-electron microscopy
-
Lu Z., et al. Monolithic microfluidic mixing-spraying devices for time-resolved cryo-electron microscopy. J. Struct. Biol. 2009, 168:388-395.
-
(2009)
J. Struct. Biol.
, vol.168
, pp. 388-395
-
-
Lu, Z.1
-
79
-
-
0033377664
-
EMAN: Semiautomated Software for High-Resolution Single-Particle Reconstructions
-
Ludtke S.J., et al. EMAN: Semiautomated Software for High-Resolution Single-Particle Reconstructions. J. Struct. Biol. 1999, 128:82-97.
-
(1999)
J. Struct. Biol.
, vol.128
, pp. 82-97
-
-
Ludtke, S.J.1
-
80
-
-
40049105503
-
De novo backbone trace of GroEL from single particle electron cryomicroscopy
-
Ludtke S.J., et al. De novo backbone trace of GroEL from single particle electron cryomicroscopy. Structure 2008, 16:441-448.
-
(2008)
Structure
, vol.16
, pp. 441-448
-
-
Ludtke, S.J.1
-
81
-
-
0346186104
-
Detecting particles in cryo-EM micrographs using learned features
-
Mallick S.P., et al. Detecting particles in cryo-EM micrographs using learned features. J. Struct. Biol. 2004, 145:52-62.
-
(2004)
J. Struct. Biol.
, vol.145
, pp. 52-62
-
-
Mallick, S.P.1
-
82
-
-
20144378098
-
ACE: Automated CTF estimation
-
Mallick S.P., et al. ACE: Automated CTF estimation. Ultramicroscopy 2005, 104:8-29.
-
(2005)
Ultramicroscopy
, vol.104
, pp. 8-29
-
-
Mallick, S.P.1
-
83
-
-
0028363358
-
Pattern recognition and classification of images of biological macromolecules using artificial neural networks
-
Marabini R., Carazo J.M. Pattern recognition and classification of images of biological macromolecules using artificial neural networks. Biophys. J. 1994, 66:1804-1814.
-
(1994)
Biophys. J.
, vol.66
, pp. 1804-1814
-
-
Marabini, R.1
Carazo, J.M.2
-
84
-
-
0029945636
-
Xmipp an image processing package for electron microscopy
-
Marabini R., et al. Xmipp an image processing package for electron microscopy. J. Struct. Biol. 1996, 116:237-240.
-
(1996)
J. Struct. Biol.
, vol.116
, pp. 237-240
-
-
Marabini, R.1
-
85
-
-
36549025956
-
Modular software platform for low-dose electron microscopy and tomography
-
Marsh M.P., et al. Modular software platform for low-dose electron microscopy and tomography. J. Microsc. 2007, 228:384-389.
-
(2007)
J. Microsc.
, vol.228
, pp. 384-389
-
-
Marsh, M.P.1
-
86
-
-
25644458666
-
Automated electron microscope tomography using robust prediction of specimen movements
-
Mastronarde D.N. Automated electron microscope tomography using robust prediction of specimen movements. J. Struct. Biol. 2005, 152:36-51.
-
(2005)
J. Struct. Biol.
, vol.152
, pp. 36-51
-
-
Mastronarde, D.N.1
-
87
-
-
84942517943
-
A versatile and affordable plunge freezing instrument for preparing specimens for cryo transmission electron microscopy (cryoEM)
-
Melanson L.A. A versatile and affordable plunge freezing instrument for preparing specimens for cryo transmission electron microscopy (cryoEM). Micros. Today 2009, 2:14-17.
-
(2009)
Micros. Today
, vol.2
, pp. 14-17
-
-
Melanson, L.A.1
-
89
-
-
0038441501
-
Accurate determination of local defocus and specimen tilt in electron microscopy
-
Mindell J.A., Grigorieff N. Accurate determination of local defocus and specimen tilt in electron microscopy. J. Struct. Biol. 2003, 142:334-347.
-
(2003)
J. Struct. Biol.
, vol.142
, pp. 334-347
-
-
Mindell, J.A.1
Grigorieff, N.2
-
91
-
-
43749083934
-
Phase contrast electron microscopy: Development of thin-film phase plates and biological applications
-
Nagayama K., Danev R. Phase contrast electron microscopy: Development of thin-film phase plates and biological applications. Philos. Trans. R. Soc. Lond. B Biol. Sci. 2008, 363:2153-2162.
-
(2008)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.363
, pp. 2153-2162
-
-
Nagayama, K.1
Danev, R.2
-
92
-
-
13844264476
-
TOM software toolbox: Acquisition and analysis for electron tomography
-
Nickell S., et al. TOM software toolbox: Acquisition and analysis for electron tomography. J. Struct. Biol. 2005, 149:227-234.
-
(2005)
J. Struct. Biol.
, vol.149
, pp. 227-234
-
-
Nickell, S.1
-
93
-
-
0032495513
-
Structure of the alpha beta tubulin dimer by electron crystallography
-
Nogales E., et al. Structure of the alpha beta tubulin dimer by electron crystallography. Nature 1998, 391:199-203.
-
(1998)
Nature
, vol.391
, pp. 199-203
-
-
Nogales, E.1
-
94
-
-
42949132348
-
Partitivirus structure reveals a 120-subunit, helix-rich capsid with distinctive surface arches formed by quasisymmetric coat-protein dimers
-
Ochoa W.F., et al. Partitivirus structure reveals a 120-subunit, helix-rich capsid with distinctive surface arches formed by quasisymmetric coat-protein dimers. Structure 2008, 16:776-786.
-
(2008)
Structure
, vol.16
, pp. 776-786
-
-
Ochoa, W.F.1
-
95
-
-
1942456920
-
Auto-accumulation method using simulated annealing enables fully automatic particle pickup completely free from a matching template or learning data
-
Ogura T., Sato C. Auto-accumulation method using simulated annealing enables fully automatic particle pickup completely free from a matching template or learning data. J. Struct. Biol. 2004, 146:344-358.
-
(2004)
J. Struct. Biol.
, vol.146
, pp. 344-358
-
-
Ogura, T.1
Sato, C.2
-
96
-
-
0347447277
-
Automatic particle pickup method using a neural network has high accuracy by applying an initial weight derived from eigenimages: A new reference free method for single-particle analysis
-
Ogura T., Sato C. Automatic particle pickup method using a neural network has high accuracy by applying an initial weight derived from eigenimages: A new reference free method for single-particle analysis. J. Struct. Biol. 2004, 145:63-75.
-
(2004)
J. Struct. Biol.
, vol.145
, pp. 63-75
-
-
Ogura, T.1
Sato, C.2
-
97
-
-
2342662152
-
Negative staining and image classification-Powerful tools in modern electron microscopy
-
Ohi M., et al. Negative staining and image classification-Powerful tools in modern electron microscopy. Biol. Proced. Online 2004, 6:23-34.
-
(2004)
Biol. Proced. Online
, vol.6
, pp. 23-34
-
-
Ohi, M.1
-
98
-
-
33750486164
-
The structure of p53 tumour suppressor protein reveals the basis for its functional plasticity
-
Okorokov A.L., et al. The structure of p53 tumour suppressor protein reveals the basis for its functional plasticity. EMBO J. 2006, 25:5191-5200.
-
(2006)
EMBO J.
, vol.25
, pp. 5191-5200
-
-
Okorokov, A.L.1
-
99
-
-
63449086336
-
Atomic structure reveals the unique capsid organization of a dsRNA virus
-
Pan J., et al. Atomic structure reveals the unique capsid organization of a dsRNA virus. Proc. Natl. Acad. Sci. USA 2009, 106:4225-4230.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 4225-4230
-
-
Pan, J.1
-
100
-
-
77950518471
-
Graphene oxide: A substrate for optimizing preparations of frozen-hydrated samples
-
Pantelic R.S., et al. Graphene oxide: A substrate for optimizing preparations of frozen-hydrated samples. J. Struct. Biol. 2010, 170:152-156.
-
(2010)
J. Struct. Biol.
, vol.170
, pp. 152-156
-
-
Pantelic, R.S.1
-
101
-
-
77649128082
-
P22 coat protein structures reveal a novel mechanism for capsid maturation: Stability without auxiliary proteins or chemical crosslinks
-
Parent K.N., et al. P22 coat protein structures reveal a novel mechanism for capsid maturation: Stability without auxiliary proteins or chemical crosslinks. Structure 2010, 18:390-401.
-
(2010)
Structure
, vol.18
, pp. 390-401
-
-
Parent, K.N.1
-
102
-
-
0035783286
-
A novel neural network technique for analysis and classification of EM single-particle images
-
Pascual-Montano A., et al. A novel neural network technique for analysis and classification of EM single-particle images. J. Struct. Biol. 2001, 133:233-245.
-
(2001)
J. Struct. Biol.
, vol.133
, pp. 233-245
-
-
Pascual-Montano, A.1
-
103
-
-
0000325341
-
On lines and planes of closest fit to systems of points in space
-
Pearson K. On lines and planes of closest fit to systems of points in space. Philos. Mag. 1901, 2:559-572.
-
(1901)
Philos. Mag.
, vol.2
, pp. 559-572
-
-
Pearson, K.1
-
104
-
-
0028393194
-
The ribosome at improved resolution: New techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles
-
Penczek P.A., et al. The ribosome at improved resolution: New techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles. Ultramicroscopy 1994, 53:251-270.
-
(1994)
Ultramicroscopy
, vol.53
, pp. 251-270
-
-
Penczek, P.A.1
-
105
-
-
0030198739
-
A common-lines based method for determining orientations for N>3 particle projections simultaneously
-
Penczek P.A., Zhu J., Frank J. A common-lines based method for determining orientations for N>3 particle projections simultaneously. Ultramicroscopy 1996, 63:205-218.
-
(1996)
Ultramicroscopy
, vol.63
, pp. 205-218
-
-
Penczek, P.A.1
Zhu, J.2
Frank, J.3
-
106
-
-
33845639652
-
The contrast-imaging function for tilted specimens
-
Philippsen A., et al. The contrast-imaging function for tilted specimens. Ultramicroscopy 2007, 107:202-212.
-
(2007)
Ultramicroscopy
, vol.107
, pp. 202-212
-
-
Philippsen, A.1
-
107
-
-
66749147856
-
A crescent-shaped ALIX dimer targets ESCRT-III CHMP4 filaments
-
Pires R., et al. A crescent-shaped ALIX dimer targets ESCRT-III CHMP4 filaments. Structure 2009, 17:843-856.
-
(2009)
Structure
, vol.17
, pp. 843-856
-
-
Pires, R.1
-
108
-
-
0347355579
-
TYSON: Robust searching, sorting, and selecting of single particles in electron micrographs
-
Plaisier J.R., et al. TYSON: Robust searching, sorting, and selecting of single particles in electron micrographs. J. Struct. Biol. 2004, 145:76-83.
-
(2004)
J. Struct. Biol.
, vol.145
, pp. 76-83
-
-
Plaisier, J.R.1
-
109
-
-
0033166275
-
Leginon: A system for fully automated acquisition of 1000 electron micrographs a day
-
Potter C.S., et al. Leginon: A system for fully automated acquisition of 1000 electron micrographs a day. Ultramicroscopy 1999, 77:153-161.
-
(1999)
Ultramicroscopy
, vol.77
, pp. 153-161
-
-
Potter, C.S.1
-
110
-
-
1942456879
-
Robotic grid loading system for a transmission electron microscope
-
Potter C.S., et al. Robotic grid loading system for a transmission electron microscope. J. Struct. Biol. 2004, 146:431-440.
-
(2004)
J. Struct. Biol.
, vol.146
, pp. 431-440
-
-
Potter, C.S.1
-
111
-
-
34948911422
-
An improved holey carbon film for cryo-electron microscopy
-
Quispe J., et al. An improved holey carbon film for cryo-electron microscopy. Microsc. Microanal. 2007, 13:365-371.
-
(2007)
Microsc. Microanal.
, vol.13
, pp. 365-371
-
-
Quispe, J.1
-
112
-
-
0022605670
-
A new 3-D reconstruction scheme applied to the 50S ribosomal subunit of E.coli
-
Radermacher M., et al. A new 3-D reconstruction scheme applied to the 50S ribosomal subunit of E.coli. J. Microsc. 1986, 141:RP1-RP2.
-
(1986)
J. Microsc.
, vol.141
-
-
Radermacher, M.1
-
113
-
-
0347985836
-
Fast automatic particle picking from cryo-electron micrographs using a locally normalized cross-correlation function: A case study
-
Rath B.K., Frank J. Fast automatic particle picking from cryo-electron micrographs using a locally normalized cross-correlation function: A case study. J. Struct. Biol. 2004, 145:84-90.
-
(2004)
J. Struct. Biol.
, vol.145
, pp. 84-90
-
-
Rath, B.K.1
Frank, J.2
-
114
-
-
0031413603
-
Low-dose automated electron tomography: A recent implementation
-
Rath B.K., et al. Low-dose automated electron tomography: A recent implementation. J. Struct. Biol. 1997, 120:210-218.
-
(1997)
J. Struct. Biol.
, vol.120
, pp. 210-218
-
-
Rath, B.K.1
-
115
-
-
0346816491
-
FindEM-A fast, efficient program for automatic selection of particles from electron micrographs
-
Roseman A.M. FindEM-A fast, efficient program for automatic selection of particles from electron micrographs. J. Struct. Biol. 2004, 145:91-99.
-
(2004)
J. Struct. Biol.
, vol.145
, pp. 91-99
-
-
Roseman, A.M.1
-
116
-
-
0142042865
-
Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy
-
Rosenthal P.B., Henderson R. Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy. J. Mol. Biol. 2003, 333:721-745.
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 721-745
-
-
Rosenthal, P.B.1
Henderson, R.2
-
117
-
-
0038016841
-
Automatic CTF correction for single particles based upon multivariate statistical analysis of individual power spectra
-
Sander B., et al. Automatic CTF correction for single particles based upon multivariate statistical analysis of individual power spectra. J. Struct. Biol. 2003, 142:392-401.
-
(2003)
J. Struct. Biol.
, vol.142
, pp. 392-401
-
-
Sander, B.1
-
118
-
-
35148839574
-
Correlative microscopy: Bridging the gap between fluorescence light microscopy and cryo-electron tomography
-
Sartori A., et al. Correlative microscopy: Bridging the gap between fluorescence light microscopy and cryo-electron tomography. J. Struct. Biol. 2007, 160:135-145.
-
(2007)
J. Struct. Biol.
, vol.160
, pp. 135-145
-
-
Sartori, A.1
-
119
-
-
0017477892
-
Motif detection in quantum noise-limited electron micrographs by cross-correlation
-
Saxton W.O., Frank J. Motif detection in quantum noise-limited electron micrographs by cross-correlation. Ultramicroscopy 1977, 2:219-227.
-
(1977)
Ultramicroscopy
, vol.2
, pp. 219-227
-
-
Saxton, W.O.1
Frank, J.2
-
120
-
-
84985239879
-
Procedures for focusing, stigmating, and alignment in high-resolution electron microscopy
-
Saxton W.O., et al. Procedures for focusing, stigmating, and alignment in high-resolution electron microscopy. J. Microsc. 1983, 130:187-201.
-
(1983)
J. Microsc.
, vol.130
, pp. 187-201
-
-
Saxton, W.O.1
-
121
-
-
27544478958
-
Fast maximum-likelihood refinement of electron microscopy images
-
Scheres S.H., et al. Fast maximum-likelihood refinement of electron microscopy images. Bioinformatics 2005, 21(Suppl. 2):ii243-ii244.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 2
-
-
Scheres, S.H.1
-
122
-
-
16244396466
-
Maximum-likelihood multi-reference refinement for electron microscopy images
-
Scheres S.H.W., et al. Maximum-likelihood multi-reference refinement for electron microscopy images. J. Mol. Biol. 2005, 348:139-149.
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 139-149
-
-
Scheres, S.H.W.1
-
123
-
-
44949165726
-
Image processing for electron microscopy single-particle analysis using XMIPP
-
Scheres S.H., et al. Image processing for electron microscopy single-particle analysis using XMIPP. Nat. Protoc. 2008, 3:977-990.
-
(2008)
Nat. Protoc.
, vol.3
, pp. 977-990
-
-
Scheres, S.H.1
-
124
-
-
68149169697
-
Parallel, distributed and GPU computing technologies in single-particle electron microscopy
-
Schmeisser M., et al. Parallel, distributed and GPU computing technologies in single-particle electron microscopy. Acta Crystallogr. D Biol. Crystallogr. 2009, 65:659-671.
-
(2009)
Acta Crystallogr. D Biol. Crystallogr.
, vol.65
, pp. 659-671
-
-
Schmeisser, M.1
-
125
-
-
51549085335
-
Particle-verification for single-particle, reference-based reconstruction using multivariate data analysis and classification
-
Shaikh T.R., et al. Particle-verification for single-particle, reference-based reconstruction using multivariate data analysis and classification. J. Struct. Biol. 2008, 164:41-48.
-
(2008)
J. Struct. Biol.
, vol.164
, pp. 41-48
-
-
Shaikh, T.R.1
-
126
-
-
51549098155
-
A Script-Assisted Microscopy (SAM) package to improve data acquisition rates on FEI Tecnai electron microscopes equipped with Gatan CCD cameras
-
Shi J., et al. A Script-Assisted Microscopy (SAM) package to improve data acquisition rates on FEI Tecnai electron microscopes equipped with Gatan CCD cameras. J. Struct. Biol. 2008, 164:166-169.
-
(2008)
J. Struct. Biol.
, vol.164
, pp. 166-169
-
-
Shi, J.1
-
127
-
-
0347355578
-
SLEUTH-A fast computer program for automatically detecting particles in electron microscope images
-
Short J.M. SLEUTH-A fast computer program for automatically detecting particles in electron microscope images. J. Struct. Biol. 2004, 145:100-110.
-
(2004)
J. Struct. Biol.
, vol.145
, pp. 100-110
-
-
Short, J.M.1
-
128
-
-
0031704540
-
A maximum-likelihood approach to single-particle image refinement
-
Sigworth F.J. A maximum-likelihood approach to single-particle image refinement. J. Struct. Biol. 1998, 122:328-339.
-
(1998)
J. Struct. Biol.
, vol.122
, pp. 328-339
-
-
Sigworth, F.J.1
-
129
-
-
76749144632
-
Detecting consistent common lines in cryo-EM by voting
-
(in press; corrected proof)
-
Singer A., et al. Detecting consistent common lines in cryo-EM by voting. J. Struct. Biol. 2010, (in press; corrected proof).
-
(2010)
J. Struct. Biol.
-
-
Singer, A.1
-
130
-
-
0347985832
-
Image segmentation for automatic particle identification in electron micrographs based on hidden Markov random field models and expectation maximization
-
Singh V., et al. Image segmentation for automatic particle identification in electron micrographs based on hidden Markov random field models and expectation maximization. J. Struct. Biol. 2004, 145:123-141.
-
(2004)
J. Struct. Biol.
, vol.145
, pp. 123-141
-
-
Singh, V.1
-
131
-
-
5144235316
-
Xmipp a new generation of an open-source image processing package for electron microscopy
-
Sorzano C.O., et al. Xmipp a new generation of an open-source image processing package for electron microscopy. J. Struct. Biol. 2004, 148:194-204.
-
(2004)
J. Struct. Biol.
, vol.148
, pp. 194-204
-
-
Sorzano, C.O.1
-
132
-
-
35048832803
-
Fast, robust, and accurate determination of transmission electron microscopy contrast transfer function
-
Sorzano C.O.S., et al. Fast, robust, and accurate determination of transmission electron microscopy contrast transfer function. J. Struct. Biol. 2007, 160:249-262.
-
(2007)
J. Struct. Biol.
, vol.160
, pp. 249-262
-
-
Sorzano, C.O.S.1
-
133
-
-
67650908133
-
Marker-free image registration of electron tomography tilt-series
-
Sorzano C.O., et al. Marker-free image registration of electron tomography tilt-series. BMC Bioinform. 2009, 10:124.
-
(2009)
BMC Bioinform.
, vol.10
, pp. 124
-
-
Sorzano, C.O.1
-
134
-
-
65649120376
-
Error analysis in the determination of the electron microscopical contrast transfer function parameters from experimental power Spectra
-
Sorzano C.O., et al. Error analysis in the determination of the electron microscopical contrast transfer function parameters from experimental power Spectra. BMC Struct. Biol. 2009, 9:18.
-
(2009)
BMC Struct. Biol.
, vol.9
, pp. 18
-
-
Sorzano, C.O.1
-
135
-
-
67651054955
-
Automatic particle selection from electron micrographs using machine learning techniques
-
Sorzano C.O.S., et al. Automatic particle selection from electron micrographs using machine learning techniques. J. Struct. Biol. 2009, 167:252-260.
-
(2009)
J. Struct. Biol.
, vol.167
, pp. 252-260
-
-
Sorzano, C.O.S.1
-
136
-
-
33845291163
-
Ab initio resolution measurement for single particle structures
-
Sousa D., Grigorieff N. Ab initio resolution measurement for single particle structures. J. Struct. Biol. 2007, 157:201-210.
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 201-210
-
-
Sousa, D.1
Grigorieff, N.2
-
137
-
-
33748775731
-
Automated cryoEM data acquisition and analysis of 284, 742 particles of GroEL
-
Stagg S.M., et al. Automated cryoEM data acquisition and analysis of 284, 742 particles of GroEL. J. Struct. Biol. 2006, 155:470-481.
-
(2006)
J. Struct. Biol.
, vol.155
, pp. 470-481
-
-
Stagg, S.M.1
-
138
-
-
8844219659
-
Noise bias in the refinement of structures derived from single particles
-
Stewart A., Grigorieff N. Noise bias in the refinement of structures derived from single particles. Ultramicroscopy 2004, 102:67-84.
-
(2004)
Ultramicroscopy
, vol.102
, pp. 67-84
-
-
Stewart, A.1
Grigorieff, N.2
-
139
-
-
20544468931
-
Automated molecular microscopy: The new Leginon system
-
Suloway C., et al. Automated molecular microscopy: The new Leginon system. J. Struct. Biol. 2005, 151:41-60.
-
(2005)
J. Struct. Biol.
, vol.151
, pp. 41-60
-
-
Suloway, C.1
-
140
-
-
67349173210
-
Fully automated, sequential tilt-series acquisition with Leginon
-
Suloway C., et al. Fully automated, sequential tilt-series acquisition with Leginon. J. Struct. Biol. 2009, 167:11-18.
-
(2009)
J. Struct. Biol.
, vol.167
, pp. 11-18
-
-
Suloway, C.1
-
141
-
-
33845332754
-
EMAN2: An extensible image processing suite for electron microscopy
-
Tang G., et al. EMAN2: An extensible image processing suite for electron microscopy. J. Struct. Biol. 2007, 157:38-46.
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 38-46
-
-
Tang, G.1
-
142
-
-
0017140343
-
Electron microscopy of frozen-hydrated biological specimens
-
Taylor K., Glaeser R.M. Electron microscopy of frozen-hydrated biological specimens. J. Ultrastruct. Res. 1976, 55:448-456.
-
(1976)
J. Ultrastruct. Res.
, vol.55
, pp. 448-456
-
-
Taylor, K.1
Glaeser, R.M.2
-
143
-
-
0029316344
-
Determination of image aberrations in high-resolution electron microscopy using diffractogram and cross-correlation methods
-
Typke D., Dierksen K. Determination of image aberrations in high-resolution electron microscopy using diffractogram and cross-correlation methods. Optik 1995, 99:155-166.
-
(1995)
Optik
, vol.99
, pp. 155-166
-
-
Typke, D.1
Dierksen, K.2
-
144
-
-
0017476790
-
Determination of the wave aberration of electron lenses from superposition diffractograms of images with differently tilted illumination
-
Typke D., Köstler D. Determination of the wave aberration of electron lenses from superposition diffractograms of images with differently tilted illumination. Ultramicroscopy 1977, 2:285-295.
-
(1977)
Ultramicroscopy
, vol.2
, pp. 285-295
-
-
Typke, D.1
Köstler, D.2
-
145
-
-
0346725097
-
A binary segmentation approach for boxing ribosome particles in cryo EM micrographs
-
Umesh Adiga P.S., et al. A binary segmentation approach for boxing ribosome particles in cryo EM micrographs. J. Struct. Biol. 2004, 145:142-151.
-
(2004)
J. Struct. Biol.
, vol.145
, pp. 142-151
-
-
Umesh Adiga, P.S.1
-
146
-
-
0023067967
-
A new resolution criterion based on spectral signal-to-noise ratios
-
Unser M., et al. A new resolution criterion based on spectral signal-to-noise ratios. Ultramicroscopy 1987, 23:39-51.
-
(1987)
Ultramicroscopy
, vol.23
, pp. 39-51
-
-
Unser, M.1
-
147
-
-
0024698772
-
The spectral signal-to-noise ratio resolution criterion: Computational efficiency and statistical precision
-
Unser M., et al. The spectral signal-to-noise ratio resolution criterion: Computational efficiency and statistical precision. Ultramicroscopy 1989, 30:429-433.
-
(1989)
Ultramicroscopy
, vol.30
, pp. 429-433
-
-
Unser, M.1
-
148
-
-
0021645447
-
Multivariate statistical classification of noisy images (randomly oriented biological macromolecules)
-
van Heel M. Multivariate statistical classification of noisy images (randomly oriented biological macromolecules). Ultramicroscopy 1984, 13:165-183.
-
(1984)
Ultramicroscopy
, vol.13
, pp. 165-183
-
-
van Heel, M.1
-
149
-
-
0023102907
-
Angular reconstitution: A posteriori assignment of projection directions for 3D reconstruction
-
van Heel M. Angular reconstitution: A posteriori assignment of projection directions for 3D reconstruction. Ultramicroscopy 1987, 21:111-124.
-
(1987)
Ultramicroscopy
, vol.21
, pp. 111-124
-
-
van Heel, M.1
-
150
-
-
0038437098
-
Classification of particles in noisy electron micrographs using correspondence analysis
-
Elsevier, Amsterdam
-
van Heel M., Frank J. Classification of particles in noisy electron micrographs using correspondence analysis. Pattern Recognition in Practice 1980, vol. 1:235-243. Elsevier, Amsterdam.
-
(1980)
Pattern Recognition in Practice
, vol.1
, pp. 235-243
-
-
van Heel, M.1
Frank, J.2
-
151
-
-
0019728717
-
Use of multivariate statistics in analysing the images of biological macromolecules
-
van Heel M., Frank J. Use of multivariate statistics in analysing the images of biological macromolecules. Ultramicroscopy 1981, 6:187-194.
-
(1981)
Ultramicroscopy
, vol.6
, pp. 187-194
-
-
van Heel, M.1
Frank, J.2
-
152
-
-
0019663497
-
IMAGIC: A fast flexible and friendly image analysis software system
-
van Heel M., Keegstra W. IMAGIC: A fast flexible and friendly image analysis software system. Ultramicroscopy 1981, 7:113-130.
-
(1981)
Ultramicroscopy
, vol.7
, pp. 113-130
-
-
van Heel, M.1
Keegstra, W.2
-
153
-
-
0022128222
-
Characteristic views of E. coli and B. stearothermophilus 30S ribosomal subunits in the electron microscope
-
van Heel M., Stoffler-Meilicke M. Characteristic views of E. coli and B. stearothermophilus 30S ribosomal subunits in the electron microscope. EMBO J. 1985, 4:2389-2395.
-
(1985)
EMBO J.
, vol.4
, pp. 2389-2395
-
-
van Heel, M.1
Stoffler-Meilicke, M.2
-
154
-
-
0026564436
-
Correlation functions revisited
-
van Heel M., et al. Correlation functions revisited. Ultramicroscopy 1992, 46:307-316.
-
(1992)
Ultramicroscopy
, vol.46
, pp. 307-316
-
-
van Heel, M.1
-
155
-
-
0029916485
-
A new generation of the IMAGIC image processing system
-
van Heel M., et al. A new generation of the IMAGIC image processing system. J. Struct. Biol. 1996, 116:17-24.
-
(1996)
J. Struct. Biol.
, vol.116
, pp. 17-24
-
-
van Heel, M.1
-
156
-
-
20244379996
-
Single-particle electron cryo-microscopy: Towards atomic resolution
-
van Heel M., et al. Single-particle electron cryo-microscopy: Towards atomic resolution. Q. Rev. Biophys. 2000, 33:307-369.
-
(2000)
Q. Rev. Biophys.
, vol.33
, pp. 307-369
-
-
van Heel, M.1
-
157
-
-
0345701398
-
A method for estimating the CTF in electron microscopy based on ARMA models and parameter adjustment
-
Velasquez-Muriel J.A., et al. A method for estimating the CTF in electron microscopy based on ARMA models and parameter adjustment. Ultramicroscopy 2003, 96:17-35.
-
(2003)
Ultramicroscopy
, vol.96
, pp. 17-35
-
-
Velasquez-Muriel, J.A.1
-
158
-
-
36049011365
-
A high-throughput strategy to screen 2D crystallization trials of membrane proteins
-
Vink M., et al. A high-throughput strategy to screen 2D crystallization trials of membrane proteins. J. Struct. Biol. 2007, 160:295-304.
-
(2007)
J. Struct. Biol.
, vol.160
, pp. 295-304
-
-
Vink, M.1
-
159
-
-
0348077420
-
An approach to automated particle picking from electron micrographs based on reduced representation templates
-
Volkmann N. An approach to automated particle picking from electron micrographs based on reduced representation templates. J. Struct. Biol. 2004, 145:152-156.
-
(2004)
J. Struct. Biol.
, vol.145
, pp. 152-156
-
-
Volkmann, N.1
-
160
-
-
63649113687
-
DoG Picker and TiltPicker: Software tools to facilitate particle selection in single particle electron microscopy
-
Voss N.R., et al. DoG Picker and TiltPicker: Software tools to facilitate particle selection in single particle electron microscopy. J. Struct. Biol. 2009, 166:205-213.
-
(2009)
J. Struct. Biol.
, vol.166
, pp. 205-213
-
-
Voss, N.R.1
-
161
-
-
76749168960
-
A toolbox for ab initio 3-D reconstructions in single-particle electron microscopy
-
Voss N.R., et al. A toolbox for ab initio 3-D reconstructions in single-particle electron microscopy. J. Struct. Biol. 2010, 169:389-398.
-
(2010)
J. Struct. Biol.
, vol.169
, pp. 389-398
-
-
Voss, N.R.1
-
162
-
-
17144450693
-
Millisecond time resolution electron cryo-microscopy of the M-ATP transient kinetic state of the acto-myosin ATPase
-
Walker M., et al. Millisecond time resolution electron cryo-microscopy of the M-ATP transient kinetic state of the acto-myosin ATPase. Biophys. J. 1995, 68:87S-91S.
-
(1995)
Biophys. J.
, vol.68
-
-
Walker, M.1
-
163
-
-
0033582235
-
Observation of transient disorder during myosin subfragment-1 binding to actin by stopped-flow fluorescence and millisecond time resolution electron cryomicroscopy: Evidence that the start of the crossbridge power stroke in muscle has variable geometry
-
Walker M., et al. Observation of transient disorder during myosin subfragment-1 binding to actin by stopped-flow fluorescence and millisecond time resolution electron cryomicroscopy: Evidence that the start of the crossbridge power stroke in muscle has variable geometry. Proc. Natl. Acad. Sci. USA 1999, 96:465-470.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 465-470
-
-
Walker, M.1
-
164
-
-
84908144695
-
Use of Fast Fourier Transform for Estimation of Power Spectra - a Method Based on Time Averaging over Short Modified Periodograms
-
Welch P.D. Use of Fast Fourier Transform for Estimation of Power Spectra - a Method Based on Time Averaging over Short Modified Periodograms. IEEE Trans. Audio Electroacoustics 1967, 70.
-
(1967)
IEEE Trans. Audio Electroacoustics
, pp. 70
-
-
Welch, P.D.1
-
165
-
-
0031880854
-
A computer-controlled spraying-freezing apparatus for millisecond time-resolution electron cryomicroscopy
-
White H.D., et al. A computer-controlled spraying-freezing apparatus for millisecond time-resolution electron cryomicroscopy. J. Struct. Biol. 1998, 121:306-313.
-
(1998)
J. Struct. Biol.
, vol.121
, pp. 306-313
-
-
White, H.D.1
-
166
-
-
0344983330
-
A second generation apparatus for time-resolved electron cryo-microscopy using stepper motors and electrospray
-
White H.D., et al. A second generation apparatus for time-resolved electron cryo-microscopy using stepper motors and electrospray. J. Struct. Biol. 2003, 144:246-252.
-
(2003)
J. Struct. Biol.
, vol.144
, pp. 246-252
-
-
White, H.D.1
-
167
-
-
29244462551
-
Accurate marker-free alignment with simultaneous geometry determination and reconstruction of tilt series in electron tomography
-
Winkler H., Taylor K.A. Accurate marker-free alignment with simultaneous geometry determination and reconstruction of tilt series in electron tomography. Ultramicroscopy 2006, 106:240-254.
-
(2006)
Ultramicroscopy
, vol.106
, pp. 240-254
-
-
Winkler, H.1
Taylor, K.A.2
-
168
-
-
58349085125
-
Tomographic subvolume alignment and subvolume classification applied to myosin V and SIV envelope spikes
-
Winkler H., et al. Tomographic subvolume alignment and subvolume classification applied to myosin V and SIV envelope spikes. J. Struct. Biol. 2009, 165:64-77.
-
(2009)
J. Struct. Biol.
, vol.165
, pp. 64-77
-
-
Winkler, H.1
-
169
-
-
0348077421
-
Model-based particle picking for cryo-electron microscopy
-
Wong H.C., et al. Model-based particle picking for cryo-electron microscopy. J. Struct. Biol. 2004, 145:157-167.
-
(2004)
J. Struct. Biol.
, vol.145
, pp. 157-167
-
-
Wong, H.C.1
-
170
-
-
33845348934
-
Ab initio random model method facilitates 3D reconstruction of icosahedral particles
-
Yan X., et al. Ab initio random model method facilitates 3D reconstruction of icosahedral particles. J. Struct. Biol. 2007, 157:211-225.
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 211-225
-
-
Yan, X.1
-
171
-
-
34548309353
-
Automation of random conical tilt and orthogonal tilt data collection using feature-based correlation
-
Yoshioka C., et al. Automation of random conical tilt and orthogonal tilt data collection using feature-based correlation. J. Struct. Biol. 2007, 159:335-346.
-
(2007)
J. Struct. Biol.
, vol.159
, pp. 335-346
-
-
Yoshioka, C.1
-
172
-
-
77952507558
-
Cryomesh: A new substrate for cryo-electron microscopy
-
Yoshioka C., et al. Cryomesh: A new substrate for cryo-electron microscopy. Microsc. Microanal. 2010, 16:43-53.
-
(2010)
Microsc. Microanal.
, vol.16
, pp. 43-53
-
-
Yoshioka, C.1
-
173
-
-
43749092377
-
3.88 A structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy
-
Yu X., et al. 3.88 A structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy. Nature 2008, 453:415-419.
-
(2008)
Nature
, vol.453
, pp. 415-419
-
-
Yu, X.1
-
174
-
-
0018365012
-
A practical procedure for alignment of a high resolution electron microscope
-
Zemlin F. A practical procedure for alignment of a high resolution electron microscope. Ultramicroscopy 1979, 4:241-245.
-
(1979)
Ultramicroscopy
, vol.4
, pp. 241-245
-
-
Zemlin, F.1
-
175
-
-
0018227155
-
Coma-free alignment of high resolution electron microscopes with the aid of optical diffractograms
-
Zemlin F., et al. Coma-free alignment of high resolution electron microscopes with the aid of optical diffractograms. Ultramicroscopy 1978, 3:49-60.
-
(1978)
Ultramicroscopy
, vol.3
, pp. 49-60
-
-
Zemlin, F.1
-
176
-
-
0035783259
-
Automated data collection with a Tecnai 12 electron microscope: Applications for molecular imaging by cryomicroscopy
-
Zhang P., et al. Automated data collection with a Tecnai 12 electron microscope: Applications for molecular imaging by cryomicroscopy. J. Struct. Biol. 2001, 135:251-261.
-
(2001)
J. Struct. Biol.
, vol.135
, pp. 251-261
-
-
Zhang, P.1
-
177
-
-
10744220292
-
Automated image acquisition and processing using a new generation of 4K × 4K CCD cameras for cryo electron microscopic studies of macromolecular assemblies
-
Zhang P., et al. Automated image acquisition and processing using a new generation of 4K × 4K CCD cameras for cryo electron microscopic studies of macromolecular assemblies. J. Struct. Biol. 2003, 143:135-144.
-
(2003)
J. Struct. Biol.
, vol.143
, pp. 135-144
-
-
Zhang, P.1
-
178
-
-
41149086034
-
Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction
-
Zhang X., et al. Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction. Proc. Natl. Acad. Sci. 2008, 105:1867-1872.
-
(2008)
Proc. Natl. Acad. Sci.
, vol.105
, pp. 1867-1872
-
-
Zhang, X.1
-
179
-
-
57149146986
-
JADAS: A customizable automated data acquisition system and its application to ice-embedded single particles
-
Zhang J., et al. JADAS: A customizable automated data acquisition system and its application to ice-embedded single particles. J. Struct. Biol. 2009, 165:1-9.
-
(2009)
J. Struct. Biol.
, vol.165
, pp. 1-9
-
-
Zhang, J.1
-
180
-
-
33845319257
-
UCSF tomography: An integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction
-
Zheng S.Q., et al. UCSF tomography: An integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction. J. Struct. Biol. 2007, 157:138-147.
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 138-147
-
-
Zheng, S.Q.1
-
181
-
-
33845316126
-
Automated acquisition of electron microscopic random conical tilt sets
-
Zheng S.Q., et al. Automated acquisition of electron microscopic random conical tilt sets. J. Struct. Biol. 2007, 157:148-155.
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 148-155
-
-
Zheng, S.Q.1
-
182
-
-
70349454052
-
Dual-axis target mapping and automated sequential acquisition of dual-axis EM tomographic data
-
Zheng S.Q., et al. Dual-axis target mapping and automated sequential acquisition of dual-axis EM tomographic data. J. Struct. Biol. 2009, 168:323-331.
-
(2009)
J. Struct. Biol.
, vol.168
, pp. 323-331
-
-
Zheng, S.Q.1
-
183
-
-
0029928874
-
CTF determination of images of ice-embedded single particles using a graphics interface
-
Zhou Z.H., et al. CTF determination of images of ice-embedded single particles using a graphics interface. J. Struct. Biol. 1996, 116:216-222.
-
(1996)
J. Struct. Biol.
, vol.116
, pp. 216-222
-
-
Zhou, Z.H.1
-
184
-
-
0141522522
-
Automatic particle detection through efficient Hough transforms
-
Zhu Y., et al. Automatic particle detection through efficient Hough transforms. IEEE Trans. Med. Imaging 2003, 22:1053-1062.
-
(2003)
IEEE Trans. Med. Imaging
, vol.22
, pp. 1053-1062
-
-
Zhu, Y.1
-
185
-
-
0348077422
-
Automatic particle selection: Results of a comparative study
-
Zhu Y., et al. Automatic particle selection: Results of a comparative study. J. Struct. Biol. 2004, 145:3-14.
-
(2004)
J. Struct. Biol.
, vol.145
, pp. 3-14
-
-
Zhu, Y.1
|