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Volumn 169, Issue 3, 2010, Pages 389-398

A Toolbox for ab initio 3-D reconstructions in single-particle electron microscopy

Author keywords

3 D reconstruction; 50S ribosomal subunit; Initial model; Single particle analysis; Transmission electron microscopy (TEM)

Indexed keywords

RIBOSOME PROTEIN;

EID: 76749168960     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2009.12.005     Document Type: Article
Times cited : (40)

References (37)
  • 1
    • 63649154791 scopus 로고    scopus 로고
    • Determination of signal-to-noise ratios and spectral SNRs in cryo-EM low-dose imaging of molecules
    • Baxter W.T., Grassucci R.A., Gao H., and Frank J. Determination of signal-to-noise ratios and spectral SNRs in cryo-EM low-dose imaging of molecules. Journal of Structural Biology 166 (2009) 126-132
    • (2009) Journal of Structural Biology , vol.166 , pp. 126-132
    • Baxter, W.T.1    Grassucci, R.A.2    Gao, H.3    Frank, J.4
  • 5
    • 29444439322 scopus 로고    scopus 로고
    • Single particle reconstructions of the transferrin-transferrin receptor complex obtained with different specimen preparation techniques
    • Cheng Y., Wolf E., Larvie M., Zak O., Aisen P., Grigorieff N., Harrison S.C., and Walz T. Single particle reconstructions of the transferrin-transferrin receptor complex obtained with different specimen preparation techniques. Journal of Molecular Biology 355 (2006) 1048-1065
    • (2006) Journal of Molecular Biology , vol.355 , pp. 1048-1065
    • Cheng, Y.1    Wolf, E.2    Larvie, M.3    Zak, O.4    Aisen, P.5    Grigorieff, N.6    Harrison, S.C.7    Walz, T.8
  • 6
    • 0016419773 scopus 로고
    • Structure analysis of macromolecular assemblies by image reconstruction from electron micrographs
    • Crowther R.A., and Klug A. Structure analysis of macromolecular assemblies by image reconstruction from electron micrographs. Annual Review of Biochemistry 44 (1975) 161-182
    • (1975) Annual Review of Biochemistry , vol.44 , pp. 161-182
    • Crowther, R.A.1    Klug, A.2
  • 8
    • 0019343924 scopus 로고
    • Three-dimensional reconstruction of single molecules
    • Frank J. Three-dimensional reconstruction of single molecules. Methods in Cell Biology 22 (1981) 325-344
    • (1981) Methods in Cell Biology , vol.22 , pp. 325-344
    • Frank, J.1
  • 10
    • 0020484108 scopus 로고
    • Correspondence analysis of aligned images of biological particles
    • Frank J., and van Heel M. Correspondence analysis of aligned images of biological particles. Journal of Molecular Biology 161 (1982) 134-137
    • (1982) Journal of Molecular Biology , vol.161 , pp. 134-137
    • Frank, J.1    van Heel, M.2
  • 12
    • 23044475632 scopus 로고    scopus 로고
    • Common conventions for interchange and archiving of three-dimensional electron microscopy information in structural biology
    • Heymann J.B., Chagoyen M., and Belnap D.M. Common conventions for interchange and archiving of three-dimensional electron microscopy information in structural biology. Journal of Structural Biology 151 (2005) 196-207
    • (2005) Journal of Structural Biology , vol.151 , pp. 196-207
    • Heymann, J.B.1    Chagoyen, M.2    Belnap, D.M.3
  • 13
    • 34547111594 scopus 로고    scopus 로고
    • Structure of the base of the L7/L12 Stalk of the Haloarcula marismortui large ribosomal subunit: analysis of L11 movements
    • Kavran J.M., and Steitz T.A. Structure of the base of the L7/L12 Stalk of the Haloarcula marismortui large ribosomal subunit: analysis of L11 movements. Journal of Molecular Biology 371 (2007) 1047-1059
    • (2007) Journal of Molecular Biology , vol.371 , pp. 1047-1059
    • Kavran, J.M.1    Steitz, T.A.2
  • 14
    • 0035423087 scopus 로고    scopus 로고
    • The kink-turn: a new RNA secondary structure motif
    • Klein D.J., Schmeing T.M., Moore P.B., and Steitz T.A. The kink-turn: a new RNA secondary structure motif. EMBO J. 20 (2001) 4214-4221
    • (2001) EMBO J. , vol.20 , pp. 4214-4221
    • Klein, D.J.1    Schmeing, T.M.2    Moore, P.B.3    Steitz, T.A.4
  • 17
    • 32544460568 scopus 로고    scopus 로고
    • The orthogonal tilt reconstruction method: an approach to generating single-class volumes with no missing cone for ab initio reconstruction of asymmetric particles
    • Leschziner A.E., and Nogales E. The orthogonal tilt reconstruction method: an approach to generating single-class volumes with no missing cone for ab initio reconstruction of asymmetric particles. Journal of Structural Biology 153 (2006) 284-299
    • (2006) Journal of Structural Biology , vol.153 , pp. 284-299
    • Leschziner, A.E.1    Nogales, E.2
  • 18
    • 0033377664 scopus 로고    scopus 로고
    • EMAN: semiautomated software for high-resolution single-particle reconstructions
    • Ludtke S.J., Baldwin P.R., and Chiu W. EMAN: semiautomated software for high-resolution single-particle reconstructions. Journal of Structural Biology 128 (1999) 82-97
    • (1999) Journal of Structural Biology , vol.128 , pp. 82-97
    • Ludtke, S.J.1    Baldwin, P.R.2    Chiu, W.3
  • 20
    • 2342662152 scopus 로고    scopus 로고
    • Negative staining and image classification - powerful tools in modern electron microscopy
    • Ohi M., Li Y., Cheng Y., and Walz T. Negative staining and image classification - powerful tools in modern electron microscopy. Biological Procedures Online 6 (2004) 23-34
    • (2004) Biological Procedures Online , vol.6 , pp. 23-34
    • Ohi, M.1    Li, Y.2    Cheng, Y.3    Walz, T.4
  • 22
  • 23
    • 27544478958 scopus 로고    scopus 로고
    • Fast maximum-likelihood refinement of electron microscopy images
    • Scheres S.H.W., Valle M., and Carazo J.-M. Fast maximum-likelihood refinement of electron microscopy images. Bioinformatics 21 (2005) ii243-ii244
    • (2005) Bioinformatics , vol.21
    • Scheres, S.H.W.1    Valle, M.2    Carazo, J.-M.3
  • 26
    • 33845291163 scopus 로고    scopus 로고
    • Ab initio resolution measurement for single particle structures
    • Sousa D., and Grigorieff N. Ab initio resolution measurement for single particle structures. Journal of Structural Biology 157 (2007) 201-210
    • (2007) Journal of Structural Biology , vol.157 , pp. 201-210
    • Sousa, D.1    Grigorieff, N.2
  • 27
    • 8844219659 scopus 로고    scopus 로고
    • Noise bias in the refinement of structures derived from single particles
    • Stewart A., and Grigorieff N. Noise bias in the refinement of structures derived from single particles. Ultramicroscopy 102 (2004) 67-84
    • (2004) Ultramicroscopy , vol.102 , pp. 67-84
    • Stewart, A.1    Grigorieff, N.2
  • 31
    • 0021645447 scopus 로고
    • Multivariate statistical classification of noisy images (randomly oriented biological macromolecules)
    • van Heel M. Multivariate statistical classification of noisy images (randomly oriented biological macromolecules). Ultramicroscopy 13 (1984) 165-183
    • (1984) Ultramicroscopy , vol.13 , pp. 165-183
    • van Heel, M.1
  • 32
    • 0023102907 scopus 로고
    • Angular reconstitution: a posteriori assignment of projection directions for 3D reconstruction
    • van Heel M. Angular reconstitution: a posteriori assignment of projection directions for 3D reconstruction. Ultramicroscopy 21 (1987) 111-124
    • (1987) Ultramicroscopy , vol.21 , pp. 111-124
    • van Heel, M.1
  • 35
    • 63649113687 scopus 로고    scopus 로고
    • DoG Picker and TiltPicker: Software tools to facilitate particle selection in single particle electron microscopy
    • Voss N.R., Yoshioka C.K., Radermacher M., Potter C.S., and Carragher B. DoG Picker and TiltPicker: Software tools to facilitate particle selection in single particle electron microscopy. Journal of Structural Biology 166 (2009) 205-213
    • (2009) Journal of Structural Biology , vol.166 , pp. 205-213
    • Voss, N.R.1    Yoshioka, C.K.2    Radermacher, M.3    Potter, C.S.4    Carragher, B.5
  • 36
    • 29244462551 scopus 로고    scopus 로고
    • Accurate marker-free alignment with simultaneous geometry determination and reconstruction of tilt series in electron tomography
    • Winkler H., and Taylor K.A. Accurate marker-free alignment with simultaneous geometry determination and reconstruction of tilt series in electron tomography. Ultramicroscopy 106 (2006) 240-254
    • (2006) Ultramicroscopy , vol.106 , pp. 240-254
    • Winkler, H.1    Taylor, K.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.