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Volumn 160, Issue 2, 2007, Pages 249-262

Fast, robust, and accurate determination of transmission electron microscopy contrast transfer function

Author keywords

Astigmatism; Contrast transfer function; Power spectrum density; Transmission electron microscope

Indexed keywords

ACCURACY; ARTICLE; CONTRAST TRANSFER FUNCTION; FOURIER TRANSFORMATION; MICROSCOPE IMAGE; PRIORITY JOURNAL; THEORETICAL MODEL; THREE DIMENSIONAL IMAGING; TRANSMISSION ELECTRON MICROSCOPY;

EID: 35048832803     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2007.08.013     Document Type: Article
Times cited : (45)

References (40)
  • 3
    • 35048870897 scopus 로고    scopus 로고
    • Cottevieille, M., Jonic, S., Larquet, E., Petoukhov, M.V., Dossena, L., Svergun, D.I., Vanoni, M.A., Boisset, N., in preparation. Structural study of bacterial glutamate synthase complex by 3D cryo-electron microscopy, homology modelling, and small-angle X-ray scattering.
  • 4
    • 0034160037 scopus 로고    scopus 로고
    • Correction of high-resolution data for curvature of the Ewald sphere
    • De Rosier D.J. Correction of high-resolution data for curvature of the Ewald sphere. Ultramicroscopy 81 (2000) 83-98
    • (2000) Ultramicroscopy , vol.81 , pp. 83-98
    • De Rosier, D.J.1
  • 5
    • 0343052627 scopus 로고    scopus 로고
    • A spectral estimation approach to contrast transfer function detection in electron microscopy
    • Fernández J.J., Sanjurjo J., and Carazo J.M. A spectral estimation approach to contrast transfer function detection in electron microscopy. Ultramicroscopy 68 (1997) 267-295
    • (1997) Ultramicroscopy , vol.68 , pp. 267-295
    • Fernández, J.J.1    Sanjurjo, J.2    Carazo, J.M.3
  • 6
    • 0000676323 scopus 로고
    • On the correction of the contrast transfer function in biological electron microscopy
    • Frank J., and Penczek P. On the correction of the contrast transfer function in biological electron microscopy. Optik 98 (1995) 125-129
    • (1995) Optik , vol.98 , pp. 125-129
    • Frank, J.1    Penczek, P.2
  • 7
    • 0036089703 scopus 로고    scopus 로고
    • Single-particle imaging of macromolecules by cryo-electron microscopy
    • Frank J. Single-particle imaging of macromolecules by cryo-electron microscopy. Annual Review of Biophysics and Biomolecular Structure 31 (2002) 303-319
    • (2002) Annual Review of Biophysics and Biomolecular Structure , vol.31 , pp. 303-319
    • Frank, J.1
  • 9
    • 0036837519 scopus 로고    scopus 로고
    • An assay for local quality in cryo-electro micrographs of single particles
    • Gao H., Spahn C., Grassucci R., and Frank J. An assay for local quality in cryo-electro micrographs of single particles. Ultramicroscopy 93 (2002) 169-178
    • (2002) Ultramicroscopy , vol.93 , pp. 169-178
    • Gao, H.1    Spahn, C.2    Grassucci, R.3    Frank, J.4
  • 11
    • 0032540273 scopus 로고    scopus 로고
    • Three-dimensional structure of bovine NADH: ubiquinone oxidoreductase (complex I) at 22 Å in ice
    • Grigorieff N. Three-dimensional structure of bovine NADH: ubiquinone oxidoreductase (complex I) at 22 Å in ice. Journal of Molecular Biology 277 (1998) 1033-1046
    • (1998) Journal of Molecular Biology , vol.277 , pp. 1033-1046
    • Grigorieff, N.1
  • 12
    • 3142655417 scopus 로고    scopus 로고
    • Realizing the potential of electron cryo-microscopy
    • Henderson R. Realizing the potential of electron cryo-microscopy. Quarterly Review of Biophysics 37 (2004) 3-13
    • (2004) Quarterly Review of Biophysics , vol.37 , pp. 3-13
    • Henderson, R.1
  • 13
    • 0141843643 scopus 로고    scopus 로고
    • Electron cryo-microscopy shows how strong binding of myosin to actin releases nucleotide
    • Holmes K.C., Angert I.J.K.F., Jahn W., and Schroeder R.R. Electron cryo-microscopy shows how strong binding of myosin to actin releases nucleotide. Nature 425 (2003) 423-427
    • (2003) Nature , vol.425 , pp. 423-427
    • Holmes, K.C.1    Angert, I.J.K.F.2    Jahn, W.3    Schroeder, R.R.4
  • 14
    • 0344120730 scopus 로고    scopus 로고
    • Automated determination of parameters describing power spectra of micrograph images in electron microscopy
    • Huang Z., Baldwin P.R., Mullapudi S., and Penczek P.A. Automated determination of parameters describing power spectra of micrograph images in electron microscopy. Journal of Structural Biology 144 (2003) 79-94
    • (2003) Journal of Structural Biology , vol.144 , pp. 79-94
    • Huang, Z.1    Baldwin, P.R.2    Mullapudi, S.3    Penczek, P.A.4
  • 15
    • 33845407142 scopus 로고    scopus 로고
    • A novel method for improvement of visualization of power spectra for sorting cryo-electron micrographs and their local areas
    • Jonic S., Sorzano C.O.S., Cottevieille M., Larquet E., and Boisset N. A novel method for improvement of visualization of power spectra for sorting cryo-electron micrographs and their local areas. Journal of Structural Biology 157 (2007) 156-167
    • (2007) Journal of Structural Biology , vol.157 , pp. 156-167
    • Jonic, S.1    Sorzano, C.O.S.2    Cottevieille, M.3    Larquet, E.4    Boisset, N.5
  • 18
    • 0038441501 scopus 로고    scopus 로고
    • Accurate determination of local defocus and specimen tilt in electron microscopy
    • Mindell J.A., and Grigorieff N. Accurate determination of local defocus and specimen tilt in electron microscopy. Journal of Structural Biology 142 (2003) 334-347
    • (2003) Journal of Structural Biology , vol.142 , pp. 334-347
    • Mindell, J.A.1    Grigorieff, N.2
  • 19
    • 28444439746 scopus 로고    scopus 로고
    • Three dimensional reconstruction with contrast transfer compensation from defocus series
    • Penczek P.A., Zhu J., Schröder R., and Frank J. Three dimensional reconstruction with contrast transfer compensation from defocus series. Scanning Microscopy 11 (1997) 147-154
    • (1997) Scanning Microscopy , vol.11 , pp. 147-154
    • Penczek, P.A.1    Zhu, J.2    Schröder, R.3    Frank, J.4
  • 20
    • 33845639652 scopus 로고    scopus 로고
    • The contrast-imaging function for tilted specimens
    • Philippsen A., Engel H.A., and Engel A. The contrast-imaging function for tilted specimens. Ultramicroscopy 107 (2007) 202-212
    • (2007) Ultramicroscopy , vol.107 , pp. 202-212
    • Philippsen, A.1    Engel, H.A.2    Engel, A.3
  • 22
    • 0035782663 scopus 로고    scopus 로고
    • Fourier amplitude decay of electron cryomicroscopic images of single particles and effects on structure determination
    • Saad A., Ludtke S., Jakana J., Rixon F., Tsuruta H., and Chiu W. Fourier amplitude decay of electron cryomicroscopic images of single particles and effects on structure determination. Journal of Structural Biology 133 (2001) 32-42
    • (2001) Journal of Structural Biology , vol.133 , pp. 32-42
    • Saad, A.1    Ludtke, S.2    Jakana, J.3    Rixon, F.4    Tsuruta, H.5    Chiu, W.6
  • 23
    • 0037435031 scopus 로고    scopus 로고
    • From words to literature in structural proteomics
    • Sali A., Glaeser R., Earnest T., and Baumeister W. From words to literature in structural proteomics. Nature 422 (2003) 216-225
    • (2003) Nature , vol.422 , pp. 216-225
    • Sali, A.1    Glaeser, R.2    Earnest, T.3    Baumeister, W.4
  • 24
    • 0038016841 scopus 로고    scopus 로고
    • Automatic CTF correction for single particles based upon multivariate statistical analysis of individual power spectra
    • Sander B., Golas M.M., and Stark H. Automatic CTF correction for single particles based upon multivariate statistical analysis of individual power spectra. Journal of Structural Biology 142 (2003) 392-401
    • (2003) Journal of Structural Biology , vol.142 , pp. 392-401
    • Sander, B.1    Golas, M.M.2    Stark, H.3
  • 25
    • 0030295008 scopus 로고    scopus 로고
    • Maximum-entropy three-dimensional reconstruction with deconvolution of the contrast transfer function: a test application with adenovirus
    • Skoglund U., Ofverstedt L.G., Burnett R., and Bricogne G. Maximum-entropy three-dimensional reconstruction with deconvolution of the contrast transfer function: a test application with adenovirus. Journal of Structural Biology 117 (1996) 173-188
    • (1996) Journal of Structural Biology , vol.117 , pp. 173-188
    • Skoglund, U.1    Ofverstedt, L.G.2    Burnett, R.3    Bricogne, G.4
  • 29
    • 0023820449 scopus 로고
    • Contrast transfer for frozen-hydrated specimens: determination from pairs of defocused images
    • Toyoshima C., and Unwin N.T.P. Contrast transfer for frozen-hydrated specimens: determination from pairs of defocused images. Ultramicroscopy 25 (1988) 279-292
    • (1988) Ultramicroscopy , vol.25 , pp. 279-292
    • Toyoshima, C.1    Unwin, N.T.P.2
  • 30
    • 0027405822 scopus 로고
    • Contrast transfer for frozen-hydrated specimens II: amplitude contrast at very low frequencies
    • Toyoshima C., Yonekura K., and Sasabe H. Contrast transfer for frozen-hydrated specimens II: amplitude contrast at very low frequencies. Ultramicroscopy 48 (1993) 165-176
    • (1993) Ultramicroscopy , vol.48 , pp. 165-176
    • Toyoshima, C.1    Yonekura, K.2    Sasabe, H.3
  • 31
    • 0015907479 scopus 로고
    • Phase contrast electron microscopy of biological materials
    • Unwin P. Phase contrast electron microscopy of biological materials. Journal of Microscopy 98 (1973) 299-312
    • (1973) Journal of Microscopy , vol.98 , pp. 299-312
    • Unwin, P.1
  • 32
    • 33644822237 scopus 로고    scopus 로고
    • Structural basis for the cooperative assembly of large T antigen on the origin of replication
    • Valle M., Chen X.S., Donate L.E., Fanning E., and Carazo J.M. Structural basis for the cooperative assembly of large T antigen on the origin of replication. Journal of Molecular Biology 357 (2006) 1295-1305
    • (2006) Journal of Molecular Biology , vol.357 , pp. 1295-1305
    • Valle, M.1    Chen, X.S.2    Donate, L.E.3    Fanning, E.4    Carazo, J.M.5
  • 33
    • 20244379996 scopus 로고    scopus 로고
    • Single-particle electron cryo-microscopy: towards atomic resolution
    • van Heel M., Gowen B., and Matadeen R. Single-particle electron cryo-microscopy: towards atomic resolution. Quarterly Review of Biophysics 33 (2000) 307-369
    • (2000) Quarterly Review of Biophysics , vol.33 , pp. 307-369
    • van Heel, M.1    Gowen, B.2    Matadeen, R.3
  • 34
    • 0345701398 scopus 로고    scopus 로고
    • A method for estimating the CTF in electron microscopy based on ARMA models and parameter adjusting
    • Velázquez-Muriel J.A., Sorzano C.O.S., Fernández J.J., and Carazo J.M. A method for estimating the CTF in electron microscopy based on ARMA models and parameter adjusting. Ultramicroscopy 96 (2003) 17-35
    • (2003) Ultramicroscopy , vol.96 , pp. 17-35
    • Velázquez-Muriel, J.A.1    Sorzano, C.O.S.2    Fernández, J.J.3    Carazo, J.M.4
  • 35
    • 0026566945 scopus 로고
    • A brief look at imaging and contrast transfer
    • Wade R. A brief look at imaging and contrast transfer. Ultramicroscopy 46 (1992) 145-156
    • (1992) Ultramicroscopy , vol.46 , pp. 145-156
    • Wade, R.1
  • 36
    • 84908144695 scopus 로고
    • The use of fast Fourier transform for the estimation of power spectra: a method based on time averaging over short, modified periodograms
    • Welch P.D. The use of fast Fourier transform for the estimation of power spectra: a method based on time averaging over short, modified periodograms. IEEE Transactions on Audio Electroacoustics AU-15 (1967) 70-73
    • (1967) IEEE Transactions on Audio Electroacoustics AU-15 , pp. 70-73
    • Welch, P.D.1
  • 38
    • 0030960710 scopus 로고    scopus 로고
    • Three-dimensional reconstruction with contrast transfer function correction from energy-filtered cryoelectron micrographs: procedure and application to the 70S Escherichia coli ribosome
    • Zhu J., Penczek P.A., Schröder R., and Frank J. Three-dimensional reconstruction with contrast transfer function correction from energy-filtered cryoelectron micrographs: procedure and application to the 70S Escherichia coli ribosome. Journal of Structural Biology 118 (1997) 197-219
    • (1997) Journal of Structural Biology , vol.118 , pp. 197-219
    • Zhu, J.1    Penczek, P.A.2    Schröder, R.3    Frank, J.4
  • 39
    • 35048870400 scopus 로고    scopus 로고
    • Zou, X., 1995. Electron crystallography of inorganic structures-theory and practice. Ph.D. thesis, Stockholm University.
  • 40
    • 0041975895 scopus 로고    scopus 로고
    • Three-dimensional reconstruction by Chahine's method from electron microscopic projections corrupted by instrumental aberrations
    • Zubelli J.P., Marabini R., Sorzano C.O.S., and Herman G.T. Three-dimensional reconstruction by Chahine's method from electron microscopic projections corrupted by instrumental aberrations. Inverse Problems 19 (2003) 933-949
    • (2003) Inverse Problems , vol.19 , pp. 933-949
    • Zubelli, J.P.1    Marabini, R.2    Sorzano, C.O.S.3    Herman, G.T.4


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