emScope: A tool kit for control and automation of a remote electron microscope

Journal of Structural Biology

Volumn 120, Issue 3, 1997, Pages 309-319

  Kisseberth, Nick ^a   Whittaker, Michael ^b   Weber, Daniel ^a   Potter, Clinton S ^a   Carragher, Bridget ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATION; CONFERENCE PAPER; DATA ANALYSIS; ELECTRON MICROSCOPY; IMAGE QUALITY; MACROMOLECULE; NONHUMAN; PRIORITY JOURNAL; TECHNIQUE; THREE DIMENSIONAL IMAGING;

EID: 0031413608     PISSN: 10478477     EISSN: None     Source Type: Journal    
DOI: 10.1006/jsbi.1997.3918     Document Type: Conference Paper

References (34)

1. Arnold K., Gosling J. The Java Programming Language. 1996;Addison-Wesley, Reading.
2. Bruce B. C., Carragher B. O., Damon B. M., Dawson M. J., Eurell J. A., Gregory C. D., Lauterbur P. C., Marjanovic M. M., Mason-Fossum B., Morris H. D., Potter C. S., Thakkar U. Chickscope: An interactive MRI classroom curriculum innovation for K-12. Comput. Educ. J. 1997.
3. Carragher B., Smith P. R. Advances in computational image processing for microscopy. J. Struct. Biol. 116:1996;2-8.
4. Carragher B., Whittaker M., Milligan R. A. Helical processing using PHOELIX. J. Struct. Biol. 116:1996a;107-112.
5. B. Carragher, M. Whittaker, N. J. Kisseberth, C. Potter, R. Milligan, 1996b, Automated image acquisition from a transmission electron microscope, Whistler, Canada.
6. Chiu W., Schmid M. F., Prasad B. V. V. Teaching electron diffraction and imaging of macromolecules. Biophys. J. 64:1993;1610-1625.
7. Dierksen K., Typke D., Hegerl R., Koster A. J., Baumeister W. Towards automatic electron tomography. Ultramicroscopy. 40:1992;71-87.
8. Dierksen K., Typke D., Hegerl R., Baumeister W. Towards automatic electron tomography. II. Implementation of autofocus and low-dose procedures. Ultramicroscopy. 49:1993;109-120.
9. Downing K. H. Spot-scan imaging in transmission electron microscopy. Science. 251:1991;53-59.
10. Downing K. H., Koster A. J., Typke D. Overview of computer-aided electron microscopy. Ultramicroscopy. 46:1992;189-197.
11. Erasmus S. J., Smith K. C. A. An automatic focusing and astigmatism correction system for SEM and CTEM. J. Microsc. 127:1982;185-199.
12. Fan G. Y., Mercurio P. J., Young S. J., Ellisman M. H. Telemicroscopy. Ultramicroscopy. 52:1993;499-503.
13. Fung J. C., Liu W., De Ruijter W. J., Chen H., Abbey C. K., Sedat J. W., Agard D. A. Toward fully automated high-resolution electron tomography. J. Struct. Biol. 116:1996;181-189.
14. Henderson R. The potential and limitations of neutrons, electrons and X-rays for atomic resolution microscopy of unstained biological macromolecules. Q. Rev. Biophys. 28:1995;171-193.
15. Johnson E. F. Cross-Platform Perl. 1996;M&T Books.
16. N. Kisseberth, C. S. Potter, G. E. Brauer, J. A. Lindquist, M. K. Jatko, B. Carragher, 1996, Webscope.Tem: A modular system for distributed TEM, Microscopy Society of America 54th Annual Meeting, 390, 391, Minneapolis, MN.
17. Koster A. J., de Ruijter W. J., van der Bos A., van der Mast K. D. Autotuning of a TEM with minimum electron dose. Ultramicroscopy. 27:1989;251-272.
18. Koster A. J., Chen H., Sedat J. W., Agard D. A. Automated microscopy for electron tomography. Ultramicroscopy. 46:1992;207-227.
19. Koster A. J., van der Bos A., van der Mast K. D. An autofocus method for a TEM. Ultramicroscopy. 21:1987;209-222.
20. Koster A. J., Brauneld M. B., Fung J. C., Abbey C. K., Han K. F., Liu W., Chen H., Sedat J. W., Agard D. A. MSA Bull. 23:1993;176-188.
21. Lutz M. Programming Python. 1996;O'Reilly and Associates.
22. M. A. O'Keefe, J. Taylor, D. Owen, B. Crowley, K. H. Westmacott, W. Johnson, U. Dahmen, 1996, Remote on-line control of a high-voltage IN SITU transmission electron microscope with rational user interface, Microscopy Society of America 54th Annual Meeting, 384, 385, Minneapolis, MN.
23. Ousterhout J. K. Tcl and the Tk Toolkit. 1994;Addison-Wesley, Reading.
24. C. S. Potter, C. D. Gregory, H. D. Morris, P. C. Lauterbur, 1994a, The NEUROSCOPE: An interactive system for real-time functional MRI of the brain, Second Meeting of the Society of Magnetic Resonance, 835, San Francisco.
25. C. S. Potter, C. D. Gregory, H. D. Morris, Z.-P. Liang, P. C. Lauterbur, 1994b, Toward a NEUROSCOPE: An application of high performance computing for real-time evaluation of brain function using MRI, Proceeding 52nd Annual Meeting of the Microscopy Society of America, 922, 923.
26. C. S. Potter, Z.-P. Liang, C. D. Gregory, H. D. Morris, P. C. Lauterbur, 1994c, Toward a neuroscope: A real-time imaging system for the evaluation of brain function, Proceedings, First IEEE International Conference on Image Processing, III, 25, 29, Austin, TX.
27. Saxton W. O., Smith D. J., O'Keefe M. A., Wood G. J., Stobbs W. M. J. Microsc. 130:1983;187.
28. D. Typke, K. Dierksen, W. Baumeister, 1991, Automatic electron tomography, Proceedings, 49th Annual Meeting EMSA, 544, San Diego.
29. J. Taylor, B. Parvin, 1996, A scaleable approach to teleoperation, Microscopy Society of America 54th Annual Meeting, 388, 389, Minneapolis, MN.
30. E. Volkl, L. F. Allard, T. A. Nolan, D. Hill, M. Lehmann, 1996, A simple and inexpensive route to remote electron microscopy, Microscopy Society of America 54th Annual Meeting, 386, 387, Minneapolis, MN.
31. M. Whittaker, B. Carragher, N. Kisseberth, C. Potter, G. Brauer, R. Brady, R. Milligan, 1996, Webscope.Tem: A prototype system for remote control and image acquisition from transmission electron microscopes, Annual Meeting of the American Association of Cell Biology, San Francisco, CA.
32. Whittaker M., Carragher B. O., Milligan R. PHOELIX: A package for semi-automated helical reconstruction. Ultramicroscopy. 58:1995;245-259.
33. Young S. J., Fan G. Y., Hessler D., Lamont S., Elvins T. T., Hadida M., Hanyzewski G., Durkin J. W., Hubbard P., Kindalman D., Wong E., Greenberg D., Karin S., Ellisman M. H. Implementing a collaboratory for digital microscopy. Int. J. Supercomput. Appl. 10:1996;170-181.
34. N. J. Zaluzec, 1996, Tele-Presence Microscopy/LabSpace: An interactive collaboratory for use in education and research, Microscopy Society of America 54th Annual Meeting, 382, 383, Minneapolis, MN.