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Volumn 9, Issue , 2009, Pages

Error analysis in the determination of the electron microscopical contrast transfer function parameters from experimental power Spectra

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; ELECTRON MICROSCOPY; ELECTRON TRANSPORT; ERROR; METHODOLOGY; POWER SPECTRUM; TRANSMISSION ELECTRON MICROSCOPY; ALGORITHM; FOURIER ANALYSIS; IMAGE PROCESSING; PHASE CONTRAST MICROSCOPY; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; THEORETICAL MODEL; THREE DIMENSIONAL IMAGING;

EID: 65649120376     PISSN: None     EISSN: 14726807     Source Type: Journal    
DOI: 10.1186/1472-6807-9-18     Document Type: Article
Times cited : (8)

References (25)
  • 1
    • 35048832803 scopus 로고    scopus 로고
    • Fast, robust, and accurate determination of transmission electron microscopy contrast transfer function
    • DOI 10.1016/j.jsb.2007.08.013, PII S104784770700202X
    • Fast, robust and accurate determination of transmission electron microscopy contrast transfer function. COS Sorzano S Jonic R Ñez-Ramírez N Boisset JM Carazo, J Struct Biol. 2007 160 2 249 262 10.1016/j.jsb.2007.08.013 17911028 (Pubitemid 47554531)
    • (2007) Journal of Structural Biology , vol.160 , Issue.2 , pp. 249-262
    • Sorzano, C.O.S.1    Jonic, S.2    Nunez-Ramirez, R.3    Boisset, N.4    Carazo, J.M.5
  • 3
    • 0344120730 scopus 로고    scopus 로고
    • Automated determination of parameters describing power spectra of micrograph images in electron microscopy
    • DOI 10.1016/j.jsb.2003.10.011
    • Automated determination of parameters describing power spectra of micrograph images in electron microscopy. Z Huang PR Baldwin S Mullapudi PA Penczek, J Struct Biol. 2003 144 1-2 79 94 10.1016/j.jsb.2003.10.011 14643211 (Pubitemid 37468368)
    • (2003) Journal of Structural Biology , vol.144 , Issue.1-2 , pp. 79-94
    • Huang, Z.1    Baldwin, P.R.2    Mullapudi, S.3    Penczek, P.A.4
  • 4
    • 20144378098 scopus 로고    scopus 로고
    • ACE: Automated CTF estimation
    • DOI 10.1016/j.ultramic.2005.02.004, PII S0304399105000367
    • ACE: Automated CTF Estimation. SP Mallick B Carragher CS Potter DJ Kriegman, Ultramicroscopy 2005 104 8 29 10.1016/j.ultramic.2005.02.004 15935913 (Pubitemid 40776088)
    • (2005) Ultramicroscopy , vol.104 , Issue.1 , pp. 8-29
    • Mallick, S.P.1    Carragher, B.2    Potter, C.S.3    Kriegman, D.J.4
  • 5
    • 0038441501 scopus 로고    scopus 로고
    • Accurate determination of local defocus and specimen tilt in electron microscopy
    • DOI 10.1016/S1047-8477(03)00069-8
    • Accurate determination of local defocus and specimen tilt in electron microscopy. JA Mindell N Grigorieff, J Struct Biol. 2003 142 3 334 347 10.1016/S1047-8477(03)00069-8 12781660 (Pubitemid 36638267)
    • (2003) Journal of Structural Biology , vol.142 , Issue.3 , pp. 334-347
    • Mindell, J.A.1    Grigorieff, N.2
  • 6
    • 0035782663 scopus 로고    scopus 로고
    • Fourier Amplitude Decay of Electron Cryomicroscopic Images of Single Particles and Effects on Structure Determination
    • DOI 10.1006/jsbi.2001.4330, PII S1047847701943308
    • Fourier amplitude decay of electron cryomicroscopic images of single particles and effects on structure determination. A Saad S Ludtke J Jakana F Rixon H Tsuruta W Chiu, J Struct Biol. 2001 133 1 32 42 10.1006/jsbi.2001.4330 11356062 (Pubitemid 33586141)
    • (2001) Journal of Structural Biology , vol.133 , Issue.1 , pp. 32-42
    • Saad, A.1    Ludtke, S.J.2    Jakana, J.3    Rixon, F.J.4    Tsuruta, H.5    Chiu, W.6
  • 7
    • 0038016841 scopus 로고    scopus 로고
    • Automatic CTF correction for single particles based upon multivariate statistical analysis of individual power spectra
    • DOI 10.1016/S1047-8477(03)00072-8
    • Automatic CTF correction for single particles based upon multivariate statistical analysis of individual power spectra. B Sander MM Golas H Stark, J Struct Biol. 2003 142 3 392 401 10.1016/S1047-8477(03)00072-8 12781666 (Pubitemid 36644152)
    • (2003) Journal of Structural Biology , vol.142 , Issue.3 , pp. 392-401
    • Sander, B.1    Golas, M.M.2    Stark, H.3
  • 8
    • 0345701398 scopus 로고    scopus 로고
    • A method for estimating the CTF in electron microscopy based on ARMA models and parameter adjustment
    • DOI 10.1016/S0304-3991(02)00377-7, PII S0304399102003777
    • A method for estimating the CTF in electron microscopy based on ARMA models and parameter adjusting. JA Velázquez-Muriel COS Sorzano JJ Fernández JM Carazo, Ultramicroscopy 2003 96 17 35 10.1016/S0304-3991(02) 00377-7 12623169 (Pubitemid 36287230)
    • (2003) Ultramicroscopy , vol.96 , Issue.1 , pp. 17-35
    • Velazquez-Muriel, J.A.1    Sorzano, C.O.S.2    Fernandez, J.J.3    Carazo, J.M.4
  • 9
    • 0029928874 scopus 로고    scopus 로고
    • CTF determination of images of ice-embedded single particles using a graphics interface
    • DOI 10.1006/jsbi.1996.0033
    • CTF determination of images of ice-embedded single particles using a graphics interface. ZH Zhou S Hardt B Wang MB Sherman J Jakana W Chiu, J Struct Biol. 1996 116 1 216 222 10.1006/jsbi.1996.0033 8742746 (Pubitemid 26093146)
    • (1996) Journal of Structural Biology , vol.116 , Issue.1 , pp. 216-222
    • Zhou, Z.H.1    Hardt, S.2    Wang, B.3    Sherman, M.B.4    Jakana, J.5    Chiu, W.6
  • 10
    • 0030960710 scopus 로고    scopus 로고
    • Three-dimensional reconstruction with contrast transfer function correction from energy-filtered cryoelectron micrographs: Procedure and application to the 70S Escherichia coli ribosome
    • DOI 10.1006/jsbi.1997.3845
    • Three-Dimensional Reconstruction with Contrast Transfer Function Correction from Energy-Filtered Cryoelectron Micrographs: Procedure and Application to the 70S Escherichia coli Ribosome. J Zhu PA Penczek R Schröder J Frank, J Struct Biol. 1997 118 3 197 219 10.1006/jsbi.1997.3845 9169230 (Pubitemid 27239875)
    • (1997) Journal of Structural Biology , vol.118 , Issue.3 , pp. 197-219
    • Zhu, J.1    Penczek, P.A.2    Schroder, R.3    Frank, J.4
  • 12
    • 0343052627 scopus 로고    scopus 로고
    • A spectral estimation approach to contrast transfer function detection in electron microscopy
    • DOI 10.1016/S0304-3991(97)00032-6, PII S0304399197000326
    • A spectral estimation approach to contrast transfer function detection in electron microscopy. JJ Fernández J Sanjurjo JM Carazo, Ultramicroscopy 1997 68 267 295 10.1016/S0304-3991(97)00032-6 (Pubitemid 27323991)
    • (1997) Ultramicroscopy , vol.68 , Issue.4 , pp. 267-295
    • Fernandez, J.-J.1    Sanjurjo, J.R.2    Carazo, J.-M.3
  • 13
    • 84908144695 scopus 로고
    • The use of fast Fourier transform for the estimation of power spectra: A method based on time averaging over short, modified periodograms
    • 10.1109/TAU.1967.1161901
    • The use of fast Fourier transform for the estimation of power spectra: A method based on time averaging over short, modified periodograms. PD Welch, IEEE Trans. Audio Electroacoustics 1967 AU-15 70 73 10.1109/TAU.1967.1161901
    • (1967) IEEE Trans. Audio Electroacoustics , vol.15 , pp. 70-73
    • Welch, P.D.1
  • 14
    • 33845407142 scopus 로고    scopus 로고
    • A novel method for improvement of visualization of power spectra for sorting cryo-electron micrographs and their local areas
    • 10.1016/j.jsb.2006.06.014 16987671
    • A novel method for improvement of visualization of power spectra for sorting cryo-electron micrographs and their local areas. S Jonic COS Sorzano M Cottevieille E Larquet N Boisset, J Struct Biol. 2007 157 1 156 167 10.1016/j.jsb.2006.06.014 16987671
    • (2007) J Struct Biol. , vol.157 , Issue.1 , pp. 156-167
    • Jonic, S.1    Sorzano, C.O.S.2    Cottevieille, M.3    Larquet, E.4    Boisset, N.5
  • 16
    • 1342309625 scopus 로고    scopus 로고
    • Transfer function restoration in 3D electron microscopy via iterative data refinement
    • DOI 10.1088/0031-9155/49/4/003, PII S0031915504692608
    • Transfer function restoration in 3D electron microscopy via iterative data refinement. COS Sorzano R Marabini GT Herman Y Censor JM Carazo, Phys Med Biol. 2004 49 4 509 522 10.1088/0031-9155/49/4/003 15005161 (Pubitemid 38255934)
    • (2004) Physics in Medicine and Biology , vol.49 , Issue.4 , pp. 509-522
    • Sorzano, C.O.S.1    Marabini, R.2    Herman, G.T.3    Censor, Y.4    Carazo, J.M.5
  • 17
    • 0346243986 scopus 로고    scopus 로고
    • Large T antigen on the simian virus 40 origin of replication: A 3D snapshot prior to DNA replication
    • DOI 10.1093/emboj/cdg612
    • Large T antigen on the simian virus 40 origin of replication: a 3D snapshot prior to DNA replication. M Gmez-Lorenzo M Valle J Frank C Gruss COS Sorzano XS Chen LE Donate JM Carazo, EMBO Journal 2003 22 6205 6213 14633980 10.1093/emboj/cdg612 (Pubitemid 37522578)
    • (2003) EMBO Journal , vol.22 , Issue.23 , pp. 6205-6213
    • Gomez-Lorenzo, M.G.1    Valle, M.2    Frank, J.3    Gruss, C.4    Sorzano, C.O.S.5    Chen, X.S.6    Donate, L.E.7    Carazo, J.M.8
  • 18
    • 33644822237 scopus 로고    scopus 로고
    • Structural basis for the cooperative assembly of large T antigen on the origin of replication
    • DOI 10.1016/j.jmb.2006.01.021, PII S0022283606000507
    • Structural Basis for the Cooperative Assembly of Large T Antigen on the Origin of Replication. M Valle XS Chen LE Donate E Fanning JM Carazo, J Mol Biol. 2006 357 4 1295 1305 10.1016/j.jmb.2006.01.021 16481006 (Pubitemid 43357989)
    • (2006) Journal of Molecular Biology , vol.357 , Issue.4 , pp. 1295-1305
    • Valle, M.1    Chen, X.S.2    Donate, L.E.3    Fanning, E.4    Carazo, J.M.5
  • 19
    • 43749088927 scopus 로고    scopus 로고
    • The subnanometer resolution structure of the glutamate synthase 1.2-MDa hexamer by cryoelectron microscopy and its oligomerization behavior in solution: Functional implications
    • 10.1074/jbc.M708529200 18199747
    • The subnanometer resolution structure of the glutamate synthase 1.2-MDa hexamer by cryoelectron microscopy and its oligomerization behavior in solution: functional implications. M Cottevieille E Larquet S Jonic MV Petoukhov G Caprini S Paravisi DI Svergun MA Vanoni N Boisset, J Biol Chem 2008 283 13 8237 8249 10.1074/jbc.M708529200 18199747
    • (2008) J Biol Chem , vol.283 , Issue.13 , pp. 8237-8249
    • Cottevieille, M.1    Larquet, E.2    Jonic, S.3    Petoukhov, M.V.4    Caprini, G.5    Paravisi, S.6    Svergun, D.I.7    Vanoni, M.A.8    Boisset, N.9
  • 20
    • 0028885711 scopus 로고
    • Conformational Variability in the Refined Structure of the Chaperonin GroEL at 2.8 Resolution
    • 10.1038/nsb1295-1083 8846220
    • Conformational Variability in the Refined Structure of the Chaperonin GroEL at 2.8 Resolution. K Braig PD Adams AT Brunger, Nature Structural Biology 1995 2 1083 1094 10.1038/nsb1295-1083 8846220
    • (1995) Nature Structural Biology , vol.2 , pp. 1083-1094
    • Braig, K.1    Adams, P.D.2    Brunger, A.T.3
  • 21
    • 0000313739 scopus 로고
    • Exact filters for general geometry three dimensional reconstruction
    • Exact filters for general geometry three dimensional reconstruction. G Harauz M van Heel, Optik 1986 73 146 156
    • (1986) Optik , vol.73 , pp. 146-156
    • Harauz, G.1    Van Heel, M.2
  • 22
    • 0023820449 scopus 로고
    • CONTRAST TRANSFER FOR FROZEN-HYDRATED SPECIMENS: DETERMINATION FROM PAIRS OF DEFOCUSED IMAGES.
    • DOI 10.1016/0304-3991(88)90003-4
    • Contrast transfer for frozen-hydrated specimens: Determination from pairs of defocused images. C Toyoshima NTP Unwin, Ultramicroscopy 1988 25 279 292 10.1016/0304-3991(88)90003-4 3188279 (Pubitemid 18662667)
    • (1988) Ultramicroscopy , vol.25 , Issue.4 , pp. 279-292
    • Toyoshima Chikashi1    Unwin Nigel2
  • 23
    • 0027405822 scopus 로고
    • Contrast transfer for frozen-hydrated specimens. II. Amplitude contrast at very low frequencies
    • DOI 10.1016/0304-3991(93)90179-2
    • Contrast transfer for frozen-hydrated specimens II: Amplitude contrast at very low frequencies. C Toyoshima K Yonekura H Sasabe, Ultramicroscopy 1993 48 165 176 10.1016/0304-3991(93)90179-2 (Pubitemid 23058755)
    • (1993) Ultramicroscopy , vol.48 , Issue.1-2 , pp. 165-176
    • Toyoshima, C.1    Yonekura, K.2    Sasabe, H.3


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