Single particle reconstructions of the transferrin-transferrin receptor complex obtained with different specimen preparation techniques

Journal of Molecular Biology

Volumn 355, Issue 5, 2006, Pages 1048-1065

  Cheng, Yifan ^a   Wolf, Elmar ^a   Larvie, Mykol ^a   Zak, Olga ^b   Aisen, Philip ^b   Grigorieff, Nikolaus ^c   Harrison, Stephen C ^a   Walz, Thomas ^a  

^a HARVARD MEDICAL SCHOOL   (United States)

^b ALBERT EINSTEIN COLLEGE OF MEDICINE   (United States)

^c BRANDEIS UNIVERSITY   (United States)

Author keywords

Angular reconstitution; Cryo negative staining; Random conical tilt; Specimen preparation; Transferrin receptor transferrin complex

Indexed keywords

TRANSFERRIN; TRANSFERRIN RECEPTOR;

ARTICLE; ELECTRON MICROSCOPY; MODEL; MOLECULAR WEIGHT; PRIORITY JOURNAL; PROTEIN STRUCTURE; RANDOMIZATION; RELIABILITY; STRUCTURE ANALYSIS; THREE DIMENSIONAL IMAGING;

EID: 29444439322     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2005.11.021     Document Type: Article

References (34)

1. B. Bottcher, S.A. Wynne, and R.A. Crowther Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy Nature 386 1997 88 91
2. Z.H. Zhou, M. Dougherty, J. Jakana, J. He, F.J. Rixon, and W. Chiu Seeing the herpesvirus capsid at 8.5 Å Science 288 2000 877 880
3. I.S. Gabashvili, R.K. Agrawal, C.M. Spahn, R.A. Grassucci, D.I. Svergun, J. Frank, and P. Penczek Solution structure of the E. coli 70S ribosome at 11.5 Å resolution Cell 100 2000 537 549
4. H. Stark, M.V. Rodnina, H.J. Wieden, M. van Heel, and W. Wintermeyer Large-scale movement of elongation factor G and extensive conformational change of the ribosome during translocation Cell 100 2000 301 309
5. M.S. Jurica, D. Sousa, M.J. Moore, and N. Grigorieff Three-dimensional structure of C complex spliceosomes by electron microscopy Nature Struct. Mol. Biol. 11 2004 265 269
6. D. Boehringer, E.M. Makarov, B. Sander, O.V. Makarova, B. Kastner, R. Luhrmann, and H. Stark Three-dimensional structure of a pre-catalytic human spliceosomal complex B Nature Struct. Mol. Biol. 11 2004 463 468
7. H. Stark, P. Dube, R. Luhrmann, and B. Kastner Arrangement of RNA and proteins in the spliceosomal U1 small nuclear ribonucleoprotein particle Nature 409 2001 539 542
8. E.V. Orlova, M.A. Rahman, B. Gowen, K.E. Volynski, A.C. Ashton, and C. Manser Structure of alpha-latrotoxin oligomers reveals that divalent cation-dependent tetramers form membrane pores Nature Struct. Biol. 7 2000 48 53
9. Y. Cheng, O. Zak, P. Aisen, S.C. Harrison, and T. Walz Structure of the human transferrin receptor-transferrin complex Cell 116 2004 565 576
10. M. Radermacher, T. Wagenknecht, A. Verschoor, and J. Frank Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50 S ribosomal subunit of Escherichia coli J. Microsc. 146 1987 113 136
11. M. van Heel Angular reconstitution: a posteriori assignment of projection directions for 3D reconstruction Ultramicroscopy 21 1987 111 123
12. A. Bremer, C. Henn, A. Engel, W. Baumeister, and U. Aebi Has negative staining still a place in biomacromolecular electron microscopy? Ultramicroscopy 46 1992 85 111
13. M. Ohi, Y. Li, Y. Cheng, and T. Walz Negative staining and image classification-powerful tools in modern electron microscopy Biol. Proc. Online 6 2004 23 34
14. M. Adrian, J. Dubochet, J. Lepault, and A.W. McDowall Cryo-electron microscopy of viruses Nature 308 1984 32 36
15. M. van Heel, H.P. Winkler, E.V. Orlova, and M. Schatz Structural analysis of ice-embedded single particles Scanning Microsc. Suppl. 6 1992 23 42
16. M. van Heel, G. Harauz, E.V. Orlova, R. Schmidt, and M. Schatz A new generation of the IMAGIC image processing system J. Struct. Biol. 116 1996 17 24
17. J. Frank, M. Rademacher, P. Penczek, J. Zhu, M. Ladjadj, and A. Leith SPIDER and WEB: processing and visulization of images in 3D electron microscopy and related fields J. Struct. Biol. 116 1996 190 199
18. S.J. Ludtke, P.R. Baldwin, and W. Chiu EMAN: semiautomated software for high-resolution single-particle reconstructions J. Struct. Biol. 128 1999 82 97
19. A. Stewart, and N. Grigorieff Noise bias in the refinement of structures derived from single particles Ultramicroscopy 102 2004 67 84
20. P.A. Penczek, J. Zhu, and J. Frank A common-lines based method for determining orientations for N>3 particle projections simultaneously Ultramicroscopy 63 1996 205 218
21. D.R. Hall, J.M. Hadden, G.A. Leonard, S. Bailey, M. Neu, M. Winn, and P.F. Lindley The crystal and molecular structures of diferric porcine and rabbit serum transferrins at resolutions of 2.15 and 2.60 Å, respectively Acta Crystallog. sect. D 58 2002 70 80
22. C.M. Lawrence, S. Ray, M. Babyonyshev, R. Galluser, D.W. Borhani, and S.C. Harrison Crystal structure of the ectodomain of human transferrin receptor Science 286 1999 779 782
23. M. Stoffler-Meilicke, and G. Stoffler Localization of ribosomal proteins on the surface of ribosomal subunits from Escherichia coli using immunoelectron microscopy Methods Enzymol. 164 1988 503 520
24. M.M. Golas, B. Sander, C.L. Will, R. Luhrmann, and H. Stark Molecular architecture of the multiprotein splicing factor SF3b Science 300 2003 980 984
25. M. Adrian, J. Dubochet, S.D. Fuller, and J.R. Harris Cryo-negative staining Micron 29 1998 145 160
26. E.V. Orlova, P. Dube, J.R. Harris, E. Beckman, F. Zemlin, J. Markl, and M. van Heel Structure of keyhole limpet hemocyanin type 1 (KLH1) at 15 Å resolution by electron cryomicroscopy and angular reconstitution J. Mol. Biol. 271 1997 417 437
27. P.N. Unwin, and R. Henderson Molecular structure determination by electron microscopy of unstained crystalline specimens J. Mol. Biol. 94 1975 425 440
28. T. Gonen, P. Sliz, J. Kistler, Y. Cheng, and T. Walz Aquaporin-0 membrane junctions reveal the structure of a closed water pore Nature 429 2004 193 197
29. P.B. Rosenthal, and R. Henderson Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy J. Mol. Biol. 333 2003 721 745
30. N. Grigorieff Three-dimensional structure of bovine NADH:ubiquinone oxidoreductase (complex I) at 22 Å in ice J. Mol. Biol. 277 1998 1033 1046
31. N. Boisset, J.C. Taveau, J. Lamy, T. Wagenknecht, M. Radermacher, and J. Frank Three-dimensional reconstruction of native Androctonus australis hemocyanin J. Mol. Biol. 216 1990 743 760
32. M. Radermacher, V. Rao, R. Grassucci, J. Frank, A.P. Timerman, S. Fleischer, and T. Wagenknecht Cryo-electron microscopy and three-dimensional reconstruction of the calcium release channel/ryanodine receptor from skeletal muscle J. Cell. Biol. 127 1994 411 423
33. R.A. Crowther, R. Henderson, and J.M. Smith MRC image processing programs J. Struct. Biol. 116 1996 9 16
34. E.F. Pettersen, T.D. Goddard, C.C. Huang, G.S. Couch, D.M. Greenblatt, E.C. Meng, and T.E. Ferrin UCSF Chimera-a visualization system for exploratory research and analysis J. Comput. Chem. 25 2004 1605 1612