-
1
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold, R., and M. Mann. 2003. Mass spectrometry-based proteomics. Nature 422:198-207.
-
(2003)
Nature
, vol.422
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
2
-
-
0042818290
-
Genome-wide expression profiling of the response to polyene, pyrimidine, azole, and echinocandin antifungal agents in Saccharomyces cerevisiae
-
Agarwal, A. K., P. D. Rogers, S. R. Baerson, M. R. Jacob, K. S. Barker, J. D. Cleary, L. A. Walker, D. G. Nagle, and A. M. Clark. 2003. Genome-wide expression profiling of the response to polyene, pyrimidine, azole, and echinocandin antifungal agents in Saccharomyces cerevisiae. J. Biol. Chem. 278:34998-35015.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 34998-35015
-
-
Agarwal, A.K.1
Rogers, P.D.2
Baerson, S.R.3
Jacob, M.R.4
Barker, K.S.5
Cleary, J.D.6
Walker, L.A.7
Nagle, D.G.8
Clark, A.M.9
-
3
-
-
0030895921
-
A comparison of selected mRNA and protein abundances in human liver
-
Anderson, L., and J. Seilhamer. 1997. A comparison of selected mRNA and protein abundances in human liver. Electrophoresis 18:533-537.
-
(1997)
Electrophoresis
, vol.18
, pp. 533-537
-
-
Anderson, L.1
Seilhamer, J.2
-
4
-
-
0041941514
-
The small RNA profile during Drosophila melanogaster development
-
Aravin, A. A., M. Lagos-Quintana, A. Yalcin, M. Zavolan, D. Marks, B. Snyder, T. Gaasterland, J. Meyer, and T. Tuschl. 2003. The small RNA profile during Drosophila melanogaster development. Dev. Cell 5:337-350.
-
(2003)
Dev. Cell
, vol.5
, pp. 337-350
-
-
Aravin, A.A.1
Lagos-Quintana, M.2
Yalcin, A.3
Zavolan, M.4
Marks, D.5
Snyder, B.6
Gaasterland, T.7
Meyer, J.8
Tuschl, T.9
-
5
-
-
0034703060
-
Global gene expression profiling in Escherichia coli K12. The effects of integration host factor
-
Arfin, S. M., A. D. Long, E. T. Ito, L. Tolleri, M. M. Riehle, E. S. Paegle, and G. W. Hatfield. 2000. Global gene expression profiling in Escherichia coli K12. The effects of integration host factor. J. Biol. Chem. 275:29672-29684.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 29672-29684
-
-
Arfin, S.M.1
Long, A.D.2
Ito, E.T.3
Tolleri, L.4
Riehle, M.M.5
Paegle, E.S.6
Hatfield, G.W.7
-
6
-
-
0030603150
-
Positive and negative regulation of a sterol biosynthetic gene (ERG3) in the postsqualene portion of the yeast ergosterol pathway
-
Arthington-Skaggs, B. A., D. N. Crowell, H. Yang, S. L. Sturley, and M. Bard. 1996. Positive and negative regulation of a sterol biosynthetic gene (ERG3) in the postsqualene portion of the yeast ergosterol pathway. FEBS Lett. 392:161-165.
-
(1996)
FEBS Lett.
, vol.392
, pp. 161-165
-
-
Arthington-Skaggs, B.A.1
Crowell, D.N.2
Yang, H.3
Sturley, S.L.4
Bard, M.5
-
7
-
-
0037316031
-
Integrating transcriptional and metabolite profiles to direct the engineering of lovastatin-producing fungal strains
-
Askenazi, M., E. M. Driggers, D. A. Holtzman, T. C. Norman, S. Iverson, D. P. Zimmer, M. E. Boers, P. R. Blomquist, E. J. Martinez, A. W. Monreal, T. P. Feibelman, M. E. Mayorga, M. E. Maxon, K. Sykes, J. V. Tobin, E. Cordero, S. R. Salama, J. Trueheart, J. C. Royer, and K. T. Madden. 2003. Integrating transcriptional and metabolite profiles to direct the engineering of lovastatin-producing fungal strains. Nat. Biotechnol. 21:150-156.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 150-156
-
-
Askenazi, M.1
Driggers, E.M.2
Holtzman, D.A.3
Norman, T.C.4
Iverson, S.5
Zimmer, D.P.6
Boers, M.E.7
Blomquist, P.R.8
Martinez, E.J.9
Monreal, A.W.10
Feibelman, T.P.11
Mayorga, M.E.12
Maxon, M.E.13
Sykes, K.14
Tobin, J.V.15
Cordero, E.16
Salama, S.R.17
Trueheart, J.18
Royer, J.C.19
Madden, K.T.20
more..
-
8
-
-
0025895183
-
Toward a science of metabolic engineering
-
Bailey, J. E. 1991. Toward a science of metabolic engineering. Science 252:1668-1675.
-
(1991)
Science
, vol.252
, pp. 1668-1675
-
-
Bailey, J.E.1
-
9
-
-
0034948896
-
A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
-
Baldi, P., and A. D. Long. 2001. A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics 17:509-519.
-
(2001)
Bioinformatics
, vol.17
, pp. 509-519
-
-
Baldi, P.1
Long, A.D.2
-
10
-
-
0034101979
-
Genome-wide expression patterns in Saccharomyces cerevisiae: Comparison of drug treatments and genetic alterations affecting biosynthesis of ergosterol
-
Bammert, G. F., and J. M. Fostel. 2000. Genome-wide expression patterns in Saccharomyces cerevisiae: comparison of drug treatments and genetic alterations affecting biosynthesis of ergosterol. Antimicrob. Agents Chemother. 44:1255-1265.
-
(2000)
Antimicrob. Agents Chemother.
, vol.44
, pp. 1255-1265
-
-
Bammert, G.F.1
Fostel, J.M.2
-
11
-
-
10744226222
-
Computational discovery of gene modules and regulatory networks
-
Bar-Joseph, Z., G. K. Gerber, T. I. Lee, N. J. Rinaldi, J. Y. Yoo, F. Robert, D. B. Gordon, E. Fraenkel, T. S. Jaakkola, R. A. Young, and D. K. Gifford. 2003. Computational discovery of gene modules and regulatory networks. Nat. Biotechnol. 21:1337-1342.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 1337-1342
-
-
Bar-Joseph, Z.1
Gerber, G.K.2
Lee, T.I.3
Rinaldi, N.J.4
Yoo, J.Y.5
Robert, F.6
Gordon, D.B.7
Fraenkel, E.8
Jaakkola, T.S.9
Young, R.A.10
Gifford, D.K.11
-
12
-
-
0024426789
-
Autoregulation of RNase III operon by mRNA processing
-
Bardwell, J. C., P. Regnier, S. M. Chen, Y. Nakamura, M. Grunberg-Manago, and D. L. Court. 1989. Autoregulation of RNase III operon by mRNA processing. EMBO J. 8:3401-3407.
-
(1989)
EMBO J.
, vol.8
, pp. 3401-3407
-
-
Bardwell, J.C.1
Regnier, P.2
Chen, S.M.3
Nakamura, Y.4
Grunberg-Manago, M.5
Court, D.L.6
-
13
-
-
0038101670
-
Identification of genes differentially expressed in association with reduced azole susceptibility in Saccharomyces cerevisiae
-
Barker, K. S., M. M. Pearson, and P. D. Rogers. 2003. Identification of genes differentially expressed in association with reduced azole susceptibility in Saccharomyces cerevisiae. J. Antimicrob. Chemother. 51:1131-1140.
-
(2003)
J. Antimicrob. Chemother.
, vol.51
, pp. 1131-1140
-
-
Barker, K.S.1
Pearson, M.M.2
Rogers, P.D.3
-
14
-
-
13244289933
-
Optimized LOWESS normalization parameter selection for DNA microarray data
-
Berger, J. A., S. Hautaniemi, A. K. Jarvinen, H. Edgren, S. K. Mitra, and J. Astola. 2004. Optimized LOWESS normalization parameter selection for DNA microarray data. BMC Bioinformatics 5:194.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 194
-
-
Berger, J.A.1
Hautaniemi, S.2
Jarvinen, A.K.3
Edgren, H.4
Mitra, S.K.5
Astola, J.6
-
15
-
-
0037162469
-
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
-
Bernstein, J. A., A. B. Khodursky, P. H. Lin, S. Lin-Chao, and S. N. Cohen. 2002. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc. Natl. Acad. Sci. USA 99:9697-9702.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 9697-9702
-
-
Bernstein, J.A.1
Khodursky, A.B.2
Lin, P.H.3
Lin-Chao, S.4
Cohen, S.N.5
-
16
-
-
1542267833
-
Global analysis of Escherichia coli RNA degradosome function using DNA microarrays
-
Bernstein, J. A., P. H. Lin, S. N. Cohen, and S. Lin-Chao. 2004. Global analysis of Escherichia coli RNA degradosome function using DNA microarrays. Proc. Natl. Acad. Sci. USA 101:2758-2763.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 2758-2763
-
-
Bernstein, J.A.1
Lin, P.H.2
Cohen, S.N.3
Lin-Chao, S.4
-
17
-
-
0037337310
-
A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling
-
Blagoev, B., I. Kratchmarova, S. E. Ong, M. Nielsen, L. J. Foster, and M. Mann. 2003. A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling. Nat. Biotechnol. 21:315-318.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 315-318
-
-
Blagoev, B.1
Kratchmarova, I.2
Ong, S.E.3
Nielsen, M.4
Foster, L.J.5
Mann, M.6
-
18
-
-
0007658020
-
Sequence to array: Probing the genome's secrets
-
Blanchard, A. P., and L. Hood. 1996. Sequence to array: probing the genome's secrets. Nat. Biotechnol. 14:1649.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 1649
-
-
Blanchard, A.P.1
Hood, L.2
-
19
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner, F. R., G. Plunkett III, C. A. Bloch, N. T. Perna, V. Burland, M. Riley, J. Collado-Vides, J. D. Glasner, C. K. Rode, G. F. Mayhew, J. Gregor, N. W. Davis, H. A. Kirkpatrick, M. A. Goeden, D. J. Rose, B. Mau, and Y. Shao. 1997. The complete genome sequence of Escherichia coli K-12. Science 277:1453-1474.
-
(1997)
Science
, vol.277
, pp. 1453-1474
-
-
Blattner, F.R.1
Plunkett III, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
Gregor, J.11
Davis, N.W.12
Kirkpatrick, H.A.13
Goeden, M.A.14
Rose, D.J.15
Mau, B.16
Shao, Y.17
-
20
-
-
0347419457
-
The proteomics bottleneck: Strategies for preliminary validation of potential biomarkers and drug targets
-
Bodovitz, S., and T. Joos. 2004. The proteomics bottleneck: strategies for preliminary validation of potential biomarkers and drug targets. Trends Biotechnol. 22:4-7.
-
(2004)
Trends Biotechnol.
, vol.22
, pp. 4-7
-
-
Bodovitz, S.1
Joos, T.2
-
21
-
-
0033570909
-
The distribution of RNA motifs in natural sequences
-
Bourdeau, V., G. Ferbeyre, M. Pageau, B. Paquin, and R. Cedergren. 1999. The distribution of RNA motifs in natural sequences. Nucleic Acids Res. 27:4457-4467.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4457-4467
-
-
Bourdeau, V.1
Ferbeyre, G.2
Pageau, M.3
Paquin, B.4
Cedergren, R.5
-
23
-
-
0042357079
-
Transcriptional, proteomic, and metabolic responses to lithium in galactose-grown yeast cells
-
Bro, C., B. Regenberg, G. Lagniel, J. Labarre, M. Montero-Lomeli, and J. Nielsen. 2003. Transcriptional, proteomic, and metabolic responses to lithium in galactose-grown yeast cells. J. Biol. Chem. 278:32141-32149.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 32141-32149
-
-
Bro, C.1
Regenberg, B.2
Lagniel, G.3
Labarre, J.4
Montero-Lomeli, M.5
Nielsen, J.6
-
24
-
-
0034602774
-
Knowledge-based analysis of microarray gene expression data by using support vector machines
-
Brown, M. P., W. N. Grundy, D. Lin, N. Cristianini, C. W. Sugnet, T. S. Furey, M. Ares, Jr., and D. Haussler. 2000. Knowledge-based analysis of microarray gene expression data by using support vector machines. Proc. Natl. Acad. Sci. USA 97:262-267.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 262-267
-
-
Brown, M.P.1
Grundy, W.N.2
Lin, D.3
Cristianini, N.4
Sugnet, C.W.5
Furey, T.S.6
Ares Jr., M.7
Haussler, D.8
-
26
-
-
1842525835
-
Fundamental Escherichia coli biochemical pathways for biomass and energy production: Creation of overall flux states
-
Carlson, R., and F. Srienc. 2004. Fundamental Escherichia coli biochemical pathways for biomass and energy production: creation of overall flux states. Biotechnol. Bioeng. 86:149-162.
-
(2004)
Biotechnol. Bioeng.
, vol.86
, pp. 149-162
-
-
Carlson, R.1
Srienc, F.2
-
27
-
-
0347761259
-
Fundamental Escherichia coli biochemical pathways for biomass and energy production: Identification of reactions
-
Carlson, R., and F. Srienc. 2004. Fundamental Escherichia coli biochemical pathways for biomass and energy production: identification of reactions. Biotechnol. Bioeng. 85:1-19.
-
(2004)
Biotechnol. Bioeng.
, vol.85
, pp. 1-19
-
-
Carlson, R.1
Srienc, F.2
-
28
-
-
0036195958
-
Metabolic control analysis in drug discovery and disease
-
Cascante, M., L. G. Boros, B. Comin-Anduix, P. de Atauri, J. J. Centelles, and P. W. Lee. 2002. Metabolic control analysis in drug discovery and disease. Nat. Biotechnol. 20:243-249.
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 243-249
-
-
Cascante, M.1
Boros, L.G.2
Comin-Anduix, B.3
De Atauri, P.4
Centelles, J.J.5
Lee, P.W.6
-
29
-
-
4444282070
-
Studying the interactome with the yeast two-hybrid system and mass spectrometry
-
Causier, B. 2004. Studying the interactome with the yeast two-hybrid system and mass spectrometry. Mass Spectrom. Rev. 23:350-367.
-
(2004)
Mass Spectrom. Rev.
, vol.23
, pp. 350-367
-
-
Causier, B.1
-
30
-
-
0027925642
-
Hierarchical functional organization of formal biological systems: A dynamical approach. I. The increase of complexity by self-association increases the domain of stability of a biological system
-
Chauvet, G. A. 1993. Hierarchical functional organization of formal biological systems: a dynamical approach. I. The increase of complexity by self-association increases the domain of stability of a biological system. Phil. Trans. R. Soc. Lond. B Biol. Sci. 339:425-444.
-
(1993)
Phil. Trans. R. Soc. Lond. B Biol. Sci.
, vol.339
, pp. 425-444
-
-
Chauvet, G.A.1
-
31
-
-
0032112293
-
A genome-wide transcriptional analysis of the mitotic cell cycle
-
Cho, R. J., M. J. Campbell, E. A. Winzeler, L. Steinmetz, A. Conway, L. Wodicka, T. G. Wolfsberg, A. E. Gabrielian, D. Landsman, D. J. Lockhart, and R. W. Davis. 1998. A genome-wide transcriptional analysis of the mitotic cell cycle. Mol. Cell. 2:65-73.
-
(1998)
Mol. Cell.
, vol.2
, pp. 65-73
-
-
Cho, R.J.1
Campbell, M.J.2
Winzeler, E.A.3
Steinmetz, L.4
Conway, A.5
Wodicka, L.6
Wolfsberg, T.G.7
Gabrielian, A.E.8
Landsman, D.9
Lockhart, D.J.10
Davis, R.W.11
-
32
-
-
8444220472
-
Gene expression microarray technologies in the development of new therapeutic agents
-
Clarke, P. A., R. T. Poele, and P. Workman. 2004. Gene expression microarray technologies in the development of new therapeutic agents. Eur. J. Cancer. 40:2560-2591.
-
(2004)
Eur. J. Cancer.
, vol.40
, pp. 2560-2591
-
-
Clarke, P.A.1
Poele, R.T.2
Workman, P.3
-
33
-
-
0142009811
-
Molecular classification of cancer: Unsupervised self-organizing map analysis of gene expression microarray data
-
Covell, D. G., A. Wallqvist, A. A. Rabow, and N. Thanki. 2003. Molecular classification of cancer: unsupervised self-organizing map analysis of gene expression microarray data. Mol. Cancer Ther. 2:317-332.
-
(2003)
Mol. Cancer Ther.
, vol.2
, pp. 317-332
-
-
Covell, D.G.1
Wallqvist, A.2
Rabow, A.A.3
Thanki, N.4
-
34
-
-
2342648924
-
Integrating high-throughput and computational data elucidates bacterial networks
-
Covert, M. W., E. M. Knight, J. L. Reed, M. J. Herrgard, and B. O. Palsson. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature 429:92-96.
-
(2004)
Nature
, vol.429
, pp. 92-96
-
-
Covert, M.W.1
Knight, E.M.2
Reed, J.L.3
Herrgard, M.J.4
Palsson, B.O.5
-
35
-
-
0035824029
-
Regulation of gene expression in flux balance models of metabolism
-
Covert, M. W, C. H. Schilling, and B. Palsson. 2001. Regulation of gene expression in flux balance models of metabolism. J. Theor. Biol. 213:73-88.
-
(2001)
J. Theor. Biol.
, vol.213
, pp. 73-88
-
-
Covert, M.W.1
Schilling, C.H.2
Palsson, B.3
-
36
-
-
0021710080
-
E. coli integration host factor binds to specific sites in DNA
-
Craig, N. L., and H. A. Nash. 1984. E. coli integration host factor binds to specific sites in DNA. Cell 39:707-716.
-
(1984)
Cell
, vol.39
, pp. 707-716
-
-
Craig, N.L.1
Nash, H.A.2
-
37
-
-
1542350073
-
Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study
-
Daran-Lapujade, P., M. L. Jansen, J. M. Daran, G. W. van, J. H. de Winde, and J. T. Pronk. 2004. Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study. J. Biol. Chem. 279:9125-9138.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 9125-9138
-
-
Daran-Lapujade, P.1
Jansen, M.L.2
Daran, J.M.3
Van, G.W.4
De Winde, J.H.5
Pronk, J.T.6
-
38
-
-
1042264072
-
Protein localization in proteomics
-
Davis, T. N. 2004. Protein localization in proteomics. Curr. Opin. Chem. Biol. 8:49-53.
-
(2004)
Curr. Opin. Chem. Biol.
, vol.8
, pp. 49-53
-
-
Davis, T.N.1
-
39
-
-
13244284551
-
Dynamic complex formation during the yeast cell cycle
-
de Lichtenberg, U., L. J. Jensen, S. Brunak, and P. Bork. 2005. Dynamic complex formation during the yeast cell cycle. Science 307:724-727.
-
(2005)
Science
, vol.307
, pp. 724-727
-
-
De Lichtenberg, U.1
Jensen, L.J.2
Brunak, S.3
Bork, P.4
-
40
-
-
0035012570
-
Genomic profiling of the response of Candida albicans to itraconazole treatment using a DNA microarray
-
De Backer, Marianne D., T. Ilyina, X. J. Ma, S. Vandoninck, W. H. Luyten, and B. H. Vanden. 2001. Genomic profiling of the response of Candida albicans to itraconazole treatment using a DNA microarray. Antimicrob. Agents Chemother. 45:1660-1670.
-
(2001)
Antimicrob. Agents Chemother.
, vol.45
, pp. 1660-1670
-
-
De Backer, M.D.1
Ilyina, T.2
Ma, X.J.3
Vandoninck, S.4
Luyten, W.H.5
Vanden, B.H.6
-
41
-
-
0036268081
-
Gene-expression-based responses to drug treatment
-
De Backer, Marianne D., R. L. Thurmond, A. A. Carmen, and W. H. Luyten. 2002. Gene-expression-based responses to drug treatment. Drug News Perspect. 15:155-165.
-
(2002)
Drug News Perspect.
, vol.15
, pp. 155-165
-
-
De Backer, M.D.1
Thurmond, R.L.2
Carmen, A.A.3
Luyten, W.H.4
-
42
-
-
0035941209
-
NADP-glutamate dehydrogenase isoenzymes of Saccharomyces cerevisiae. Purification, kinetic properties, and physiological roles
-
DeLuna, A., A. Avendano, L. Riego, and A. Gonzalez. 2001. NADP-glutamate dehydrogenase isoenzymes of Saccharomyces cerevisiae. Purification, kinetic properties, and physiological roles. J. Biol. Chem. 276:43775-43783.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 43775-43783
-
-
Deluna, A.1
Avendano, A.2
Riego, L.3
Gonzalez, A.4
-
43
-
-
10344265937
-
Control of rRNA synthesis in Escherichia coli: A systems biology approach
-
Dennis, P. P., M. Ehrenberg, and H. Bremer. 2004. Control of rRNA synthesis in Escherichia coli: a systems biology approach. Microbiol. Mol. Biol. Rev. 68:639-668.
-
(2004)
Microbiol. Mol. Biol. Rev.
, vol.68
, pp. 639-668
-
-
Dennis, P.P.1
Ehrenberg, M.2
Bremer, H.3
-
44
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi, J. L., V. R. Iyer, and P. O. Brown. 1997. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278: 680-686.
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
Derisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
45
-
-
0028307609
-
Growth phase variation of integration host factor level in Escherichia coli
-
Ditto, M. D.. D. Roberts, and R. A. Weisberg. 1994. Growth phase variation of integration host factor level in Escherichia coli. J. Bacteriol. 176:3738-3748.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 3738-3748
-
-
Ditto, M.D.1
Roberts, D.2
Weisberg, R.A.3
-
46
-
-
0035125986
-
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
-
Edwards, J. S., R. U. Ibarra, and B. O. Palsson. 2001. In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data. Nat. Biotechnol. 19:125-130.
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 125-130
-
-
Edwards, J.S.1
Ibarra, R.U.2
Palsson, B.O.3
-
47
-
-
0033580813
-
Systems properties of the Haemophilus influenzae Rd metabolic genotype
-
Edwards, J. S., and B. O. Palsson. 1999. Systems properties of the Haemophilus influenzae Rd metabolic genotype. J. Biol. Chem. 274:17410-17416.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 17410-17416
-
-
Edwards, J.S.1
Palsson, B.O.2
-
48
-
-
0033570768
-
Normalization of array hybridization experiments in differential gene expression analysis
-
Eickhoff, B., B. Korn, M. Schick, A. Poustka, and J. van der Bosch. 1999. Normalization of array hybridization experiments in differential gene expression analysis. Nucleic Acids Res. 27:e33.
-
(1999)
Nucleic Acids Res.
, vol.27
-
-
Eickhoff, B.1
Korn, B.2
Schick, M.3
Poustka, A.4
Van Der Bosch, J.5
-
49
-
-
0033031437
-
DNA arrays for analysis of gene expression
-
Eisen, M. B., and P. O. Brown. 1999. DNA arrays for analysis of gene expression. Methods Enzymol. 303:179-205.
-
(1999)
Methods Enzymol.
, vol.303
, pp. 179-205
-
-
Eisen, M.B.1
Brown, P.O.2
-
50
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen, M. B., P. T. Spellman, P. O. Brown, and D. Botstein. 1998. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA 95:14863-14868.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
51
-
-
0031568786
-
A good turn for DNA: The structure of integration host factor bound to DNA
-
Ellenberger, T., and A. Landy. 1997. A good turn for DNA: the structure of integration host factor bound to DNA. Structure 5:153-157.
-
(1997)
Structure
, vol.5
, pp. 153-157
-
-
Ellenberger, T.1
Landy, A.2
-
52
-
-
0344824417
-
Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network
-
Famili, I., J. Forster, J. Nielsen, and B. O. Palsson. 2003. Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network. Proc. Natl. Acad. Sci. USA 100:13134-13139.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 13134-13139
-
-
Famili, I.1
Forster, J.2
Nielsen, J.3
Palsson, B.O.4
-
53
-
-
0034024497
-
Improving lycopene production in Escherichia coli by engineering metabolic control
-
Farmer, W. R., and J. C. Liao. 2000. Improving lycopene production in Escherichia coli by engineering metabolic control. Nat. Biotechnol. 18:533-537.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 533-537
-
-
Farmer, W.R.1
Liao, J.C.2
-
54
-
-
0035845501
-
Correspondence analysis applied to microarray data
-
Fellenberg, K., N. C. Hauser, B. Brors, A. Neutzner, J. D. Hoheisel, and M. Vingron. 2001. Correspondence analysis applied to microarray data. Proc. Natl. Acad. Sci. USA 98:10781-10786.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 10781-10786
-
-
Fellenberg, K.1
Hauser, N.C.2
Brors, B.3
Neutzner, A.4
Hoheisel, J.D.5
Vingron, M.6
-
55
-
-
0037313750
-
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
-
Forster, J., I. Famili, P. Fu, B. O. Palsson, and J. Nielsen. 2003. Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome Res. 13:244-253.
-
(2003)
Genome Res.
, vol.13
, pp. 244-253
-
-
Forster, J.1
Famili, I.2
Fu, P.3
Palsson, B.O.4
Nielsen, J.5
-
56
-
-
0042816453
-
Large-scale evaluation of in silico gene deletions in Saccharomyces cerevisiae
-
Forster, J., I. Famili, B. O. Palsson, and J. Nielsen. 2003. Large-scale evaluation of in silico gene deletions in Saccharomyces cerevisiae. OMICS 7:193-202.
-
(2003)
OMICS
, vol.7
, pp. 193-202
-
-
Forster, J.1
Famili, I.2
Palsson, B.O.3
Nielsen, J.4
-
57
-
-
0037155592
-
An mRNA surveillance mechanism that eliminates transcripts lacking termination codons
-
Frischmeyer, P. A., A. van Hoof, K. O'Donnell, A. L. Guerrerio, R. Parker, and H. C. Dietz. 2002. An mRNA surveillance mechanism that eliminates transcripts lacking termination codons. Science 295:2258-2261.
-
(2002)
Science
, vol.295
, pp. 2258-2261
-
-
Frischmeyer, P.A.1
Van Hoof, A.2
O'Donnell, K.3
Guerrerio, A.L.4
Parker, R.5
Dietz, H.C.6
-
58
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin, A. C., M. Bosche, R. Krause, P. Grandi, M. Marzioch, A. Bauer, J. Schultz, J. M. Rick, A. M. Michon, C. M. Cruciat, M. Remor, C. Hofert, M. Schelder, M. Brajenovic, H. Ruffner, A. Merino, K. Klein, M. Hudak, D. Dickson, T. Rudi, V. Gnau, A. Bauch, S. Bastuck, B. Huhse, C. Leutwein, M. A. Heurtier, R. R. Copley, A. Edelmann, E. Querfurth, V. Rybin, G. Drewes, M. Raida, T. Bouwmeester, P. Bork, B. Seraphin, B. Kuster, G. Neubauer, and G. Superti-Furga. 2002. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415: 141-147.
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.M.9
Cruciat, C.M.10
Remor, M.11
Hofert, C.12
Schelder, M.13
Brajenovic, M.14
Ruffner, H.15
Merino, A.16
Klein, K.17
Hudak, M.18
Dickson, D.19
Rudi, T.20
Gnau, V.21
Bauch, A.22
Bastuck, S.23
Huhse, B.24
Leutwein, C.25
Heurtier, M.A.26
Copley, R.R.27
Edelmann, A.28
Querfurth, E.29
Rybin, V.30
Drewes, G.31
Raida, M.32
Bouwmeester, T.33
Bork, P.34
Seraphin, B.35
Kuster, B.36
Neubauer, G.37
Superti-Furga, G.38
more..
-
59
-
-
1542320707
-
Hfq, a new chaperoning role: Binding to messenger RNA determines access for small RNA regulator 6
-
Geissmann, T. A., and D. Touati. 2004. Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulator 6. EMBO J. 23:396-405.
-
(2004)
EMBO J.
, vol.23
, pp. 396-405
-
-
Geissmann, T.A.1
Touati, D.2
-
60
-
-
0035933597
-
Quinones as the redox signal for the arc two-component system of bacteria
-
Georgellis, D., O. Kwon, and E. C. Lin. 2001. Quinones as the redox signal for the arc two-component system of bacteria. Science 292:2314-2316.
-
(2001)
Science
, vol.292
, pp. 2314-2316
-
-
Georgellis, D.1
Kwon, O.2
Lin, E.C.3
-
61
-
-
0142215475
-
Global analysis of protein expression in yeast
-
Ghaemmaghami, S., W. K. Huh, K. Bower, R. W. Howson, A. Belle, N. Dephoure, E. K. O'shea, and J. S. Weissman. 2003. Global analysis of protein expression in yeast. Nature 425:737-741.
-
(2003)
Nature
, vol.425
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
Dephoure, N.6
O'Shea, E.K.7
Weissman, J.S.8
-
62
-
-
0035154372
-
Gene expression changes triggered by exposure of Haemophilus influenzae to novobiocin or ciprofloxacin: Combined transcription and translation analysis
-
Grauender, H., K. Kuratli, P. K. Di, C. P. Gray, W. Keck, and S. Evers. 2001. Gene expression changes triggered by exposure of Haemophilus influenzae to novobiocin or ciprofloxacin: combined transcription and translation analysis. Genome Res. 11:28-42.
-
(2001)
Genome Res.
, vol.11
, pp. 28-42
-
-
Grauender, H.1
Kuratli, K.2
Di, P.K.3
Gray, C.P.4
Keck, W.5
Evers, S.6
-
63
-
-
10244239321
-
Life with 6000 genes
-
Goffeau, A., B. G. Barrell, H. Bussey, R. W. Davis, B. Dujon, H. Feldmann, F. Galibert, J. D. Hoheisel, C. Jacq, M. Johnston, E. J. Louis, H. W. Mewes, Y. Murakami, P. Philippsen, H. Tettelin, and S. G. Oliver. 1996. Life with 6000 genes. Science 274:546-567.
-
(1996)
Science
, vol.274
, pp. 546-567
-
-
Goffeau, A.1
Barrell, B.G.2
Bussey, H.3
Davis, R.W.4
Dujon, B.5
Feldmann, H.6
Galibert, F.7
Hoheisel, J.D.8
Jacq, C.9
Johnston, M.10
Louis, E.J.11
Mewes, H.W.12
Murakami, Y.13
Philippsen, P.14
Tettelin, H.15
Oliver, S.G.16
-
64
-
-
0032934143
-
In vitro selection of integration host factor binding sites
-
Goodman, S. D., N. J. Velten, Q. Gao, S. Robinson, and A. M. Segall. 1999. In vitro selection of integration host factor binding sites. J. Bacteriol. 181:3246-3255.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 3246-3255
-
-
Goodman, S.D.1
Velten, N.J.2
Gao, Q.3
Robinson, S.4
Segall, A.M.5
-
65
-
-
0025180835
-
Searching for and predicting the activity of sites for DNA binding proteins: Compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF)
-
Goodrich, J. A., M. L. Schwartz, and W. R. McClure. 1990. Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF). Nucleic Acids Res. 18:4993-5000.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 4993-5000
-
-
Goodrich, J.A.1
Schwartz, M.L.2
McClure, W.R.3
-
66
-
-
4344682527
-
The small RNA regulators of Escherichia coli: Roles and mechanisms
-
Gottesman, S. 2004. The small RNA regulators of Escherichia coli: roles and mechanisms. Annu. Rev. Microbiol. 58:303-328.
-
(2004)
Annu. Rev. Microbiol.
, vol.58
, pp. 303-328
-
-
Gottesman, S.1
-
67
-
-
0035787734
-
Small RNA regulators of translation: Mechanisms of action and approaches for identifying new small RNAs
-
Gottesman, S., G. Storz, C. Rosenow, N. Majdalani, F. Repoila, and K. M. Wassarman. 2001. Small RNA regulators of translation: mechanisms of action and approaches for identifying new small RNAs. Cold Spring Harb. Symp. Quant. Biol. 66:353-362.
-
(2001)
Cold Spring Harb. Symp. Quant. Biol.
, vol.66
, pp. 353-362
-
-
Gottesman, S.1
Storz, G.2
Rosenow, C.3
Majdalani, N.4
Repoila, F.5
Wassarman, K.M.6
-
68
-
-
2942561052
-
Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors
-
Grigull, J., S. Mnaimneh, J. Pootoolal, M. D. Robinson, and T. R. Hughes. 2004. Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors. Mol. Cell. Biol. 24:5534-5547.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 5534-5547
-
-
Grigull, J.1
Mnaimneh, S.2
Pootoolal, J.3
Robinson, M.D.4
Hughes, T.R.5
-
69
-
-
0037143757
-
Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: Rapid decay is associated with a group of touch- and specific clock-controlled genes
-
Gutierrez, R. A., R. M. Ewing, J. M. Cherry, and P. J. Green. 2002. Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch- and specific clock-controlled genes. Proc. Natl. Acad. Sci. USA 99:11513-11518.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 11513-11518
-
-
Gutierrez, R.A.1
Ewing, R.M.2
Cherry, J.M.3
Green, P.J.4
-
70
-
-
0034662907
-
Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology
-
Gygi, S. P., G. L. Corthals, Y. Zhang, Y. Rochon, and R. Aebersold. 2000. Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology. Proc. Natl. Acad. Sci. USA 97:9390-9395.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 9390-9395
-
-
Gygi, S.P.1
Corthals, G.L.2
Zhang, Y.3
Rochon, Y.4
Aebersold, R.5
-
71
-
-
0033016717
-
Correlation between protein and mRNA abundance in yeast
-
Gygi, S. P., Y. Rochon, B. R. Franza, and R. Aebersold. 1999. Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol. 19:1720-1730.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 1720-1730
-
-
Gygi, S.P.1
Rochon, Y.2
Franza, B.R.3
Aebersold, R.4
-
72
-
-
0035221240
-
Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions
-
RESEARCH0004
-
Haab, B. B., M. J. Dunham, and P. O. Brown. 2001. Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions. Genome Biol. 2:RESEARCH0004.
-
(2001)
Genome Biol.
, vol.2
-
-
Haab, B.B.1
Dunham, M.J.2
Brown, P.O.3
-
73
-
-
0347416978
-
Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5′ to 3′ mRNA decay pathways in yeast
-
He, F., X. Li, P. Spatrick, R. Casillo, S. Dong, and A. Jacobson. 2003. Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5′ to 3′ mRNA decay pathways in yeast. Mol. Cell 12:1439-1452.
-
(2003)
Mol. Cell
, vol.12
, pp. 1439-1452
-
-
He, F.1
Li, X.2
Spatrick, P.3
Casillo, R.4
Dong, S.5
Jacobson, A.6
-
74
-
-
0019503177
-
Cell-cycle regulation of yeast histone mRNA
-
Hereford, L. M., M. A. Osley, T. R. Ludwig, and C. S. McLaughlin. 1981. Cell-cycle regulation of yeast histone mRNA. Cell 24:367-375.
-
(1981)
Cell
, vol.24
, pp. 367-375
-
-
Hereford, L.M.1
Osley, M.A.2
Ludwig, T.R.3
McLaughlin, C.S.4
-
75
-
-
0037313537
-
Genome-wide analysis of RNA-protein interactions illustrates specificity of the mRNA export machinery
-
Hieronymus, H., and P. A. Silver. 2003. Genome-wide analysis of RNA-protein interactions illustrates specificity of the mRNA export machinery. Nat. Genet. 33:155-161.
-
(2003)
Nat. Genet.
, vol.33
, pp. 155-161
-
-
Hieronymus, H.1
Silver, P.A.2
-
76
-
-
10044282898
-
A systems view of mRNP biology
-
Hieronymus, H., and P. A. Silver. 2004. A systems view of mRNP biology. Genes Dev. 18:2845-2860.
-
(2004)
Genes Dev.
, vol.18
, pp. 2845-2860
-
-
Hieronymus, H.1
Silver, P.A.2
-
77
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Ho, Y., A. Gruhler, A. Heilbut, G. D. Bader, L. Moore, S. L. Adams, A. Millar, P. Taylor, K. Bennett, K. Boutilier, L. Yang, C. Wolting, I. Donaldson, S. Schandorff, J. Shewnarane, M. Vo, J. Taggart, M. Goudreault, B. Muskat, C. Alfarano, D. Dewar, Z. Lin, K. Michalickova, A. R. Willems, H. Sassi, P. A. Nielsen, K. J. Rasmussen, J. R. Andersen, L. E. Johansen, L. H. Hansen, H. Jespersen, A. Podtelejnikov, E. Nielsen, J. Crawford, V. Poulsen, B. D. Sorensen, J. Matthiesen, R. C. Hendrickson, F. Gleeson, T. Pawson, M. F. Moran, D. Durocher, M. Mann, C. W. Hogue, D. Figeys, and M. Tyers. 2002. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415:180-183.
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.L.6
Millar, A.7
Taylor, P.8
Bennett, K.9
Boutilier, K.10
Yang, L.11
Wolting, C.12
Donaldson, I.13
Schandorff, S.14
Shewnarane, J.15
Vo, M.16
Taggart, J.17
Goudreault, M.18
Muskat, B.19
Alfarano, C.20
Dewar, D.21
Lin, Z.22
Michalickova, K.23
Willems, A.R.24
Sassi, H.25
Nielsen, P.A.26
Rasmussen, K.J.27
Andersen, J.R.28
Johansen, L.E.29
Hansen, L.H.30
Jespersen, H.31
Podtelejnikov, A.32
Nielsen, E.33
Crawford, J.34
Poulsen, V.35
Sorensen, B.D.36
Matthiesen, J.37
Hendrickson, R.C.38
Gleeson, F.39
Pawson, T.40
Moran, M.F.41
Durocher, D.42
Mann, M.43
Hogue, C.W.44
Figeys, D.45
Tyers, M.46
more..
-
79
-
-
0036766957
-
A personal view of molecular technology and how it has changed biology
-
Hood, L. 2002. A personal view of molecular technology and how it has changed biology. J. Proteome Res. 1:399-409.
-
(2002)
J. Proteome Res.
, vol.1
, pp. 399-409
-
-
Hood, L.1
-
80
-
-
0037288767
-
Systems biology: Integrating technology, biology, and computation
-
Hood, L. 2003. Systems biology: integrating technology, biology, and computation. Mech. Ageing Dev. 124:9-16.
-
(2003)
Mech. Ageing Dev.
, vol.124
, pp. 9-16
-
-
Hood, L.1
-
81
-
-
0036241055
-
Visualization of interactions among bZIP and Rel family proteins in living cells using bimolecular fluorescence complementation
-
Hu, C. D., Y. Chinenov, and T. K. Kerppola. 2002. Visualization of interactions among bZIP and Rel family proteins in living cells using bimolecular fluorescence complementation. Mol. Cell 9:789-798.
-
(2002)
Mol. Cell
, vol.9
, pp. 789-798
-
-
Hu, C.D.1
Chinenov, Y.2
Kerppola, T.K.3
-
82
-
-
0037995710
-
Simultaneous visualization of multiple protein interactions in living cells using multicolor fluorescence complementation analysis
-
Hu, C. D., and T. K. Kerppola. 2003. Simultaneous visualization of multiple protein interactions in living cells using multicolor fluorescence complementation analysis. Nat. Biotechnol. 21:539-545.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 539-545
-
-
Hu, C.D.1
Kerppola, T.K.2
-
83
-
-
0035072249
-
Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
-
Hughes, T. R., M. Mao, A. R. Jones, J. Burchard, M. J. Marton, K. W. Shannon, S. M. Lefkowitz, M. Ziman, J. M. Schelter, M. R. Meyer, S. Kobayashi, C. Davis, H. Dai, Y. D. He, S. B. Stephaniants, G. Cavet, W. L. Walker, A. West, E. Coffey, D. D. Shoemaker, R. Stoughton, A. P. Blanchard, S. H. Friend, and P. S. Linsley. 2001. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat. Biotechnol. 19:342-347.
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 342-347
-
-
Hughes, T.R.1
Mao, M.2
Jones, A.R.3
Burchard, J.4
Marton, M.J.5
Shannon, K.W.6
Lefkowitz, S.M.7
Ziman, M.8
Schelter, J.M.9
Meyer, M.R.10
Kobayashi, S.11
Davis, C.12
Dai, H.13
He, Y.D.14
Stephaniants, S.B.15
Cavet, G.16
Walker, W.L.17
West, A.18
Coffey, E.19
Shoemaker, D.D.20
Stoughton, R.21
Blanchard, A.P.22
Friend, S.H.23
Linsley, P.S.24
more..
-
84
-
-
0142184341
-
Global analysis of protein localization in budding yeast
-
Huh, W. K., J. V. Falvo, L. C. Gerke, A. S. Carroll, R. W. Howson, J. S. Weissman, and E. K. O'shea. 2003. Global analysis of protein localization in budding yeast. Nature 425:686-691.
-
(2003)
Nature
, vol.425
, pp. 686-691
-
-
Huh, W.K.1
Falvo, J.V.2
Gerke, L.C.3
Carroll, A.S.4
Howson, R.W.5
Weissman, J.S.6
O'Shea, E.K.7
-
85
-
-
0037174983
-
Global gene expression profiling in Escherichia coli K12. The effects of leucine-responsive regulatory protein
-
Hung, S. P., P. Baldi, and G. W. Hatfield. 2002. Global gene expression profiling in Escherichia coli K12. The effects of leucine-responsive regulatory protein. J. Biol. Chem. 277:40309-40323.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 40309-40323
-
-
Hung, S.P.1
Baldi, P.2
Hatfield, G.W.3
-
86
-
-
0017699914
-
A field and circuit thermodynamics for integrative physiology. I. Introduction to the general notions
-
Iberall, A. S. 1977. A field and circuit thermodynamics for integrative physiology. I. Introduction to the general notions. Am. J. Physiol. 233: R171-R180.
-
(1977)
Am. J. Physiol.
, vol.233
-
-
Iberall, A.S.1
-
87
-
-
0035805255
-
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
-
Ideker, T., V. Thorsson, J. A. Ranish, R. Christmas, J. Buhler, J. K. Eng, R. Bumgarner, D. R. Goodlett, R. Aebersold, and L. Hood. 2001. Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science 292:929-934.
-
(2001)
Science
, vol.292
, pp. 929-934
-
-
Ideker, T.1
Thorsson, V.2
Ranish, J.A.3
Christmas, R.4
Buhler, J.5
Eng, J.K.6
Bumgarner, R.7
Goodlett, D.R.8
Aebersold, R.9
Hood, L.10
-
88
-
-
0036699526
-
Revealing modular organization in the yeast transcriptional network
-
Ihmels, J., G. Friedlander, S. Bergmann, O. Sarig, Y. Ziv, and N. Barkai. 2002. Revealing modular organization in the yeast transcriptional network. Nat. Genet. 31:370-377.
-
(2002)
Nat. Genet.
, vol.31
, pp. 370-377
-
-
Ihmels, J.1
Friedlander, G.2
Bergmann, S.3
Sarig, O.4
Ziv, Y.5
Barkai, N.6
-
89
-
-
0346095291
-
Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae
-
Ihmels, J., R. Levy, and N. Barkai. 2004. Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae. Nat. Biotechnol. 22:86-92.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 86-92
-
-
Ihmels, J.1
Levy, R.2
Barkai, N.3
-
90
-
-
0347717583
-
Identification of Lhp1p-associated RNAs by microarray analysis in Saccharomyces cerevisiae reveals association with coding and noncoding RNAs
-
Inada, M., and C. Guthrie. 2004. Identification of Lhp1p-associated RNAs by microarray analysis in Saccharomyces cerevisiae reveals association with coding and noncoding RNAs. Proc. Natl. Acad. Sci. USA 101:434-439.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 434-439
-
-
Inada, M.1
Guthrie, C.2
-
91
-
-
14644414887
-
Analysis of hydrostatic pressure effects on transcription in Escherichia coli by DNA microarray procedure
-
Ishii, A., T. Oshima, T. Sato, K. Nakasone, H. Mori, and C. Kato. 2004. Analysis of hydrostatic pressure effects on transcription in Escherichia coli by DNA microarray procedure. Extremophiles 9:65-73,
-
(2004)
Extremophiles
, vol.9
, pp. 65-73
-
-
Ishii, A.1
Oshima, T.2
Sato, T.3
Nakasone, K.4
Mori, H.5
Kato, C.6
-
92
-
-
0010656061
-
Exploring the protein interactome using comprehensive two-hybrid projects
-
Ito, T., T. Chiba, and M. Yoshida. 2001. Exploring the protein interactome using comprehensive two-hybrid projects. Trends Biotechnol. 19:S23-S27.
-
(2001)
Trends Biotechnol.
, vol.19
-
-
Ito, T.1
Chiba, T.2
Yoshida, M.3
-
93
-
-
0024121496
-
arcA (dye), a global regulatory gene in Escherichia coli mediating repression of enzymes in aerobic pathways
-
Iuchi, S., and E. C. Lin. 1988. arcA (dye), a global regulatory gene in Escherichia coli mediating repression of enzymes in aerobic pathways. Proc. Natl. Acad. Sci. USA 85:1888-1892.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 1888-1892
-
-
Iuchi, S.1
Lin, E.C.2
-
94
-
-
0035945567
-
Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
-
Iyer, V. R., C. E. Horak, C. S. Scafe, D. Botstein, M. Snyder, and P. O. Brown. 2001. Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature 409:533-538.
-
(2001)
Nature
, vol.409
, pp. 533-538
-
-
Iyer, V.R.1
Horak, C.E.2
Scafe, C.S.3
Botstein, D.4
Snyder, M.5
Brown, P.O.6
-
95
-
-
0028797303
-
RNase e autoregulates its synthesis by controlling the degradation rate of its own mRNA in Escherichia coli: Unusual sensitivity of the rne transcript to RNase E activity
-
Jain, C., and J. G. Belasco. 1995. RNase E autoregulates its synthesis by controlling the degradation rate of its own mRNA in Escherichia coli: unusual sensitivity of the rne transcript to RNase E activity. Genes Dev. 9:84-96.
-
(1995)
Genes Dev.
, vol.9
, pp. 84-96
-
-
Jain, C.1
Belasco, J.G.2
-
96
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong, H., B. Tomber, R. Albert, Z. N. Oltvai, and A. L. Barabasi. 2000. The large-scale organization of metabolic networks. Nature 407:651-654.
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tomber, B.2
Albert, R.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
97
-
-
1942520229
-
A functional protein chip for pathway optimization and in vitro metabolic engineering
-
Jung, G. Y., and G. Stephanopoulos. 2004. A functional protein chip for pathway optimization and in vitro metabolic engineering. Science 304:428-431.
-
(2004)
Science
, vol.304
, pp. 428-431
-
-
Jung, G.Y.1
Stephanopoulos, G.2
-
98
-
-
15044353444
-
Transcription control reprogramming in genetic backup circuits
-
Kafri, R., A. Bar-Even, and Y. Pilpel. 2005. Transcription control reprogramming in genetic backup circuits. Nat. Genet. 37:295-299.
-
(2005)
Nat. Genet.
, vol.37
, pp. 295-299
-
-
Kafri, R.1
Bar-Even, A.2
Pilpel, Y.3
-
99
-
-
1242300132
-
Regulatory network connecting two glucose signal transduction pathways in Saccharomyces cerevisiae
-
Kaniak, A., Z. Xue, D. Macool, J. H. Kim, and M. Johnston. 2004. Regulatory network connecting two glucose signal transduction pathways in Saccharomyces cerevisiae. Eukaryot. Cell 3:221-231.
-
(2004)
Eukaryot. Cell
, vol.3
, pp. 221-231
-
-
Kaniak, A.1
Xue, Z.2
Macool, D.3
Kim, J.H.4
Johnston, M.5
-
100
-
-
13244281760
-
Implication of membrane localization of target mRNA in the action of a small RNA: Mechanism of post-transcriptional regulation of glucose transporter in Escherichia coli
-
Kawamoto, H., T. Morita, A. Shimizu, T. Inada, and H. Aiba. 2005. Implication of membrane localization of target mRNA in the action of a small RNA: mechanism of post-transcriptional regulation of glucose transporter in Escherichia coli. Genes Dev. 19:328-338.
-
(2005)
Genes Dev.
, vol.19
, pp. 328-338
-
-
Kawamoto, H.1
Morita, T.2
Shimizu, A.3
Inada, T.4
Aiba, H.5
-
101
-
-
0036289532
-
Eukaryotic mRNPs may represent posttranscriptional operons
-
Keene, J. D., and S. A. Tenenbaum. 2002. Eukaryotic mRNPs may represent posttranscriptional operons. Mol. Cell. 9:1161-1167.
-
(2002)
Mol. Cell.
, vol.9
, pp. 1161-1167
-
-
Keene, J.D.1
Tenenbaum, S.A.2
-
102
-
-
0036842183
-
Genotype-phenotype mapping: Genes as computer programs
-
Kell, D. B. 2002. Genotype-phenotype mapping: genes as computer programs. Trends Genet. 18:555-559.
-
(2002)
Trends Genet.
, vol.18
, pp. 555-559
-
-
Kell, D.B.1
-
103
-
-
0033553144
-
Transcriptional regulation of the squalene synthase gene (ERG9) in the yeast Saccharomyces cerevisiae
-
Kennedy, M. A., R. Barbuch, and M. Bard. 1999. Transcriptional regulation of the squalene synthase gene (ERG9) in the yeast Saccharomyces cerevisiae. Biochim. Biophys. Acta. 1445:110-122.
-
(1999)
Biochim. Biophys. Acta.
, vol.1445
, pp. 110-122
-
-
Kennedy, M.A.1
Barbuch, R.2
Bard, M.3
-
104
-
-
0346021343
-
Linear models for microarray data analysis: Hidden similarities and differences
-
Kerr, M. K. 2003. Linear models for microarray data analysis: hidden similarities and differences. J. Comput. Biol. 10:891-901.
-
(2003)
J. Comput. Biol.
, vol.10
, pp. 891-901
-
-
Kerr, M.K.1
-
105
-
-
0000884487
-
Experimental design for gene expression microarrays
-
Kerr, M. K., and G. A. Churchill. 2001. Experimental design for gene expression microarrays. Biostatistics 2:183-201.
-
(2001)
Biostatistics
, vol.2
, pp. 183-201
-
-
Kerr, M.K.1
Churchill, G.A.2
-
106
-
-
0034927555
-
Analysis of variance for gene expression microarray data
-
Kerr, M. K., M. Martin, and G. A. Churchill. 2000. Analysis of variance for gene expression microarray data. J. Comput. Biol. 7:819-837.
-
(2000)
J. Comput. Biol.
, vol.7
, pp. 819-837
-
-
Kerr, M.K.1
Martin, M.2
Churchill, G.A.3
-
107
-
-
0037370460
-
Life after transcription-revisiting the fate of messenger RNA
-
Khodursky, A. B., and J. A. Bernstein. 2003. Life after transcription-revisiting the fate of messenger RNA. Trends Genet. 19:113-115.
-
(2003)
Trends Genet.
, vol.19
, pp. 113-115
-
-
Khodursky, A.B.1
Bernstein, J.A.2
-
108
-
-
0034710992
-
DNA microarray analysis of gene expression in response to physiological and genetic changes that affect tryptophan metabolism in Escherichia coli
-
Khodursky, A. B., B. J. Peter, N. R. Cozzarelli, D. Botstein, P. O. Brown, and C. Yanofsky. 2000. DNA microarray analysis of gene expression in response to physiological and genetic changes that affect tryptophan metabolism in Escherichia coli. Proc. Natl. Acad. Sci. USA 97:12170-12175.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 12170-12175
-
-
Khodursky, A.B.1
Peter, B.J.2
Cozzarelli, N.R.3
Botstein, D.4
Brown, P.O.5
Yanofsky, C.6
-
109
-
-
0037079054
-
Computational systems biology
-
Kitano, H. 2002. Computational systems biology. Nature 420:206-210.
-
(2002)
Nature
, vol.420
, pp. 206-210
-
-
Kitano, H.1
-
110
-
-
0001140587
-
The transition between different physiological states during balanced growth of Salmonella typhimurium
-
Kjeldgaard, N. O., O. Maaloe, and M. Schaechter. 1958. The transition between different physiological states during balanced growth of Salmonella typhimurium. J. Gen. Microbiol. 19:607-616.
-
(1958)
J. Gen. Microbiol.
, vol.19
, pp. 607-616
-
-
Kjeldgaard, N.O.1
Maaloe, O.2
Schaechter, M.3
-
111
-
-
0035212494
-
Comprehensive DNA microarray analysis of Bacillus subtilis two-component regulatory systems
-
Kobayashi, K., M. Ogura, H. Yamaguchi, K. Yoshida, N. Ogasawara, T. Tanaka, and Y. Fujita. 2001. Comprehensive DNA microarray analysis of Bacillus subtilis two-component regulatory systems. J. Bacteriol. 183:7365-7370.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 7365-7370
-
-
Kobayashi, K.1
Ogura, M.2
Yamaguchi, H.3
Yoshida, K.4
Ogasawara, N.5
Tanaka, T.6
Fujita, Y.7
-
112
-
-
0037075687
-
Genomic and proteomic perspectives in cell culture engineering
-
Korke, R., A. Rink, T. K. Seow, M. C. Chung, C. W. Beattie, and W. S. Hu. 2002. Genomic and proteomic perspectives in cell culture engineering. J. Biotechnol. 94:73-92.
-
(2002)
J. Biotechnol.
, vol.94
, pp. 73-92
-
-
Korke, R.1
Rink, A.2
Seow, T.K.3
Chung, M.C.4
Beattie, C.W.5
Hu, W.S.6
-
113
-
-
1542376957
-
In-depth profiling of lysine-producing Corynebacterium glutamicum by combined analysis of the transcriptome, metabolome, and fluxome
-
Kromer, J. O., O. Sorgenfrei, K. Klopprogge, E. Heinzle, and C. Wittmann. 2004. In-depth profiling of lysine-producing Corynebacterium glutamicum by combined analysis of the transcriptome, metabolome, and fluxome. J. Bacteriol. 186:1769-1784.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 1769-1784
-
-
Kromer, J.O.1
Sorgenfrei, O.2
Klopprogge, K.3
Heinzle, E.4
Wittmann, C.5
-
114
-
-
0037087575
-
Subcellular localization of the yeast proteome
-
Kumar, A., S. Agarwal, J. A. Heyman, S. Matson, M. Heidtman, S. Piccirillo, L. Umansky, A. Drawid, R. Jansen, Y. Liu, K. H. Cheung, P. Miller, M. Gerstein, G. S. Roeder, and M. Snyder. 2002. Subcellular localization of the yeast proteome. Genes Dev. 16:707-719.
-
(2002)
Genes Dev.
, vol.16
, pp. 707-719
-
-
Kumar, A.1
Agarwal, S.2
Heyman, J.A.3
Matson, S.4
Heidtman, M.5
Piccirillo, S.6
Umansky, L.7
Drawid, A.8
Jansen, R.9
Liu, Y.10
Cheung, K.H.11
Miller, P.12
Gerstein, M.13
Roeder, G.S.14
Snyder, M.15
-
115
-
-
4744361164
-
A primer on gene expression and microarrays for machine learning researchers
-
Kuo, W. P., E. Y. Kim, J. Trimarchi, T. K. Jenssen, S. A. Vinterbo, and L. Ohno-Machado. 2004. A primer on gene expression and microarrays for machine learning researchers. J. Biomed. Inform. 37:293-303.
-
(2004)
J. Biomed. Inform.
, vol.37
, pp. 293-303
-
-
Kuo, W.P.1
Kim, E.Y.2
Trimarchi, J.3
Jenssen, T.K.4
Vinterbo, S.A.5
Ohno-Machado, L.6
-
116
-
-
4644292945
-
Molecular prediction of response to 5-fluorouracil and interferon-alpha combination chemotherapy in advanced hepatocellular carcinoma
-
Kurokawa, Y., R. Matoba, H. Nagano, M. Sakon, I. Takemasa, S. Nakamori, K. Dono, K. Umeshita, N. Ueno, S. Ishii, K. Kato, and M. Monden. 2004. Molecular prediction of response to 5-fluorouracil and interferon-alpha combination chemotherapy in advanced hepatocellular carcinoma. Clin. Cancer Res. 10:6029-6038.
-
(2004)
Clin. Cancer Res.
, vol.10
, pp. 6029-6038
-
-
Kurokawa, Y.1
Matoba, R.2
Nagano, H.3
Sakon, M.4
Takemasa, I.5
Nakamori, S.6
Dono, K.7
Umeshita, K.8
Ueno, N.9
Ishii, S.10
Kato, K.11
Monden, M.12
-
117
-
-
0036719292
-
mRNA decay in Escherichia coli comes of age
-
Kushner, S. R. 2002. mRNA decay in Escherichia coli comes of age. J. Bacteriol. 184:4658-4665.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 4658-4665
-
-
Kushner, S.R.1
-
118
-
-
84984932880
-
Array of hope
-
Lander, E. S. 1999. Array of hope. Nat. Genet. 21:3-4.
-
(1999)
Nat. Genet.
, vol.21
, pp. 3-4
-
-
Lander, E.S.1
-
119
-
-
0031594985
-
Drug-induced phenotypes provide a tool for the functional analysis of yeast genes
-
Launhardt, H., A. Hinnen, and T. Munder. 1998. Drug-induced phenotypes provide a tool for the functional analysis of yeast genes. Yeast 14:935-942.
-
(1998)
Yeast
, vol.14
, pp. 935-942
-
-
Launhardt, H.1
Hinnen, A.2
Munder, T.3
-
120
-
-
0034730124
-
Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
-
Lee, M. L., F. C. Kuo, G. A. Whitmore, and J. Sklar. 2000. Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. Proc. Natl. Acad. Sci. USA 97:9834-9839.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 9834-9839
-
-
Lee, M.L.1
Kuo, F.C.2
Whitmore, G.A.3
Sklar, J.4
-
121
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
Lee, T. I., N. J. Rinaldi, F. Robert, D. T. Odom, Z. Bar-Joseph, G. K. Gerber, N. M. Hannett, C. T. Harbison, C. M. Thompson, I. Simon, J. Zeitlinger, E. G. Jennings, H. L. Murray, D. B. Gordon, B. Ren, J. J. Wyrick, J. B. Tagne, T. L. Volkert, E. Fraenkel, D. K. Gifford, and R. A. Young. 2002. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 298:799-804.
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
Hannett, N.M.7
Harbison, C.T.8
Thompson, C.M.9
Simon, I.10
Zeitlinger, J.11
Jennings, E.G.12
Murray, H.L.13
Gordon, D.B.14
Ren, B.15
Wyrick, J.J.16
Tagne, J.B.17
Volkert, T.L.18
Fraenkel, E.19
Gifford, D.K.20
Young, R.A.21
more..
-
122
-
-
0038729565
-
Classification of multiple cancer types by multicategory support vector machines using gene expression data
-
Lee, Y., and C. K. Lee. 2003. Classification of multiple cancer types by multicategory support vector machines using gene expression data. Bioinformatics 19:1132-1139.
-
(2003)
Bioinformatics
, vol.19
, pp. 1132-1139
-
-
Lee, Y.1
Lee, C.K.2
-
123
-
-
0036068774
-
LrhA as a new transcriptional key regulator of flagella, motility and chemotaxis genes in Escherichia coli
-
Lehnen, D., C. Blumer, T. Polen, B. Wackwitz, V. F. Wendisch, and G. Unden. 2002. LrhA as a new transcriptional key regulator of flagella, motility and chemotaxis genes in Escherichia coli. Mol. Microbiol. 45:521-532.
-
(2002)
Mol. Microbiol.
, vol.45
, pp. 521-532
-
-
Lehnen, D.1
Blumer, C.2
Polen, T.3
Wackwitz, B.4
Wendisch, V.F.5
Unden, G.6
-
124
-
-
3142564584
-
The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae
-
Lenz, D. H., K. C. Mok, B. N. Lilley, R. V. Kulkarni, N. S. Wingreen, and B. L. Bassler. 2004. The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae. Cell 118:69-82.
-
(2004)
Cell
, vol.118
, pp. 69-82
-
-
Lenz, D.H.1
Mok, K.C.2
Lilley, B.N.3
Kulkarni, R.V.4
Wingreen, N.S.5
Bassler, B.L.6
-
125
-
-
0030014654
-
Characterization of yeast methyl sterol oxidase (ERG25) and identification of a human homologue
-
Li, L., and J. Kaplan. 1996. Characterization of yeast methyl sterol oxidase (ERG25) and identification of a human homologue. J. Biol. Chem. 271: 16927-16933.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 16927-16933
-
-
Li, L.1
Kaplan, J.2
-
126
-
-
9144264169
-
A map of the interactome network of the metazoan C. elegans
-
Li, S., C. M. Armstrong, N. Bertin, H. Ge, S. Milstein, M. Boxem, P. O. Vidalain, J. D. Han, A. Chesneau, T. Hao, D. S. Goldberg, N. Li, M. Martinez, J. F. Rual, P. Lamesch, L. Xu, M. Tewari, S. L. Wong, L. V. Zhang, G. F. Berriz, L. Jacotot, P. Vaglio, J. Reboul, T. Hirozane-Kishikawa, Q. Li, H. W. Gabel, A. Elewa, B. Baumgartner, D. J. Rose, H. Yu, S. Bosak, R. Sequerra, A. Fraser, S. E. Mango, W. M. Saxton, S. Strome, H. S. Van Den, F. Piano, J. Vandenhaute, C. Sardet, M. Gerstein, L. Doucette-Stamm, K. C. Gunsalus, J. W. Harper, M. E. Cusick, F. P. Roth, D. E. Hill, and M. Vidal. 2004. A map of the interactome network of the metazoan C. elegans. Science 303:540-543.
-
(2004)
Science
, vol.303
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
Ge, H.4
Milstein, S.5
Boxem, M.6
Vidalain, P.O.7
Han, J.D.8
Chesneau, A.9
Hao, T.10
Goldberg, D.S.11
Li, N.12
Martinez, M.13
Rual, J.F.14
Lamesch, P.15
Xu, L.16
Tewari, M.17
Wong, S.L.18
Zhang, L.V.19
Berriz, G.F.20
Jacotot, L.21
Vaglio, P.22
Reboul, J.23
Hirozane-Kishikawa, T.24
Li, Q.25
Gabel, H.W.26
Elewa, A.27
Baumgartner, B.28
Rose, D.J.29
Yu, H.30
Bosak, S.31
Sequerra, R.32
Fraser, A.33
Mango, S.E.34
Saxton, W.M.35
Strome, S.36
Van Den, H.S.37
Piano, F.38
Vandenhaute, J.39
Sardet, C.40
Gerstein, M.41
Doucette-Stamm, L.42
Gunsalus, K.C.43
Harper, J.W.44
Cusick, M.E.45
Roth, F.P.46
Hill, D.E.47
Vidal, M.48
more..
-
127
-
-
3042822422
-
Custom design of metabolism
-
Liao, J. C. 2004. Custom design of metabolism. Nat. Biotechnol. 22:823-824.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 823-824
-
-
Liao, J.C.1
-
128
-
-
0345824737
-
Network component analysis: Reconstruction of regulatory signals in biological systems
-
Liao, J. C., R. Boscolo, Y. L. Yang, L. M. Tran, C. Sabatti, and V. P. Roychowdhury. 2003. Network component analysis: reconstruction of regulatory signals in biological systems. Proc. Natl. Acad. Sci. USA 100:15522-15527.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 15522-15527
-
-
Liao, J.C.1
Boscolo, R.2
Yang, Y.L.3
Tran, L.M.4
Sabatti, C.5
Roychowdhury, V.P.6
-
129
-
-
0034934774
-
Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
-
Lieb, J. D., X. Liu, D. Botstein, and P. O. Brown. 2001. Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. Nat. Genet. 28:327-334.
-
(2001)
Nat. Genet.
, vol.28
, pp. 327-334
-
-
Lieb, J.D.1
Liu, X.2
Botstein, D.3
Brown, P.O.4
-
130
-
-
0036166753
-
Linear modes of gene expression determined by independent component analysis
-
Liebermeister, W. 2002. Linear modes of gene expression determined by independent component analysis. Bioinformatics 18:51-60.
-
(2002)
Bioinformatics
, vol.18
, pp. 51-60
-
-
Liebermeister, W.1
-
131
-
-
0029093770
-
Using oligonucleotide probe arrays to access genetic diversity
-
Lipshutz, R. J., D. Morris, M. Chee, E. Hubbell, M. J. Kozal, N. Shah, N. Shen, R. Yang, and S. P. Fodor. 1995. Using oligonucleotide probe arrays to access genetic diversity. BioTechniques. 19:442-447.
-
(1995)
BioTechniques
, vol.19
, pp. 442-447
-
-
Lipshutz, R.J.1
Morris, D.2
Chee, M.3
Hubbell, E.4
Kozal, M.J.5
Shah, N.6
Shen, N.7
Yang, R.8
Fodor, S.P.9
-
132
-
-
0036324753
-
An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments
-
Liu, X. S., D. L. Brutlag, and J. S. Liu. 2002. An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments. Nat. Biotechnol. 20:835-839.
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 835-839
-
-
Liu, X.S.1
Brutlag, D.L.2
Liu, J.S.3
-
133
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonucleotide arrays
-
Lockhart, D. J., H. Dong, M. C. Byrne, M. T. Follettle, M. V. Gallo, M. S. Chee, M. Mittmann, C. Wang, M. Kobayashi, H. Horton, and E. L. Brown. 1996. Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat. Biotechnol. 14:1675-1680.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.J.1
Dong, H.2
Byrne, M.C.3
Follettle, M.T.4
Gallo, M.V.5
Chee, M.S.6
Mittmann, M.7
Wang, C.8
Kobayashi, M.9
Horton, H.10
Brown, E.L.11
-
134
-
-
0035827588
-
Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12
-
Long, A. D., H. J. Mangalam, B. Y. Chan, L. Tolleri, G. W. Hatfield, and P. Baldi. 2001. Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12. J. Biol. Chem. 276:19937-19944.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 19937-19944
-
-
Long, A.D.1
Mangalam, H.J.2
Chan, B.Y.3
Tolleri, L.4
Hatfield, G.W.5
Baldi, P.6
-
135
-
-
1542297742
-
Identification of a target RNA motif for RNA-binding protein HuR
-
Lopez, D. S., I, M. Zhan, A. Lal, X. Yang, and M. Gorospe. 2004. Identification of a target RNA motif for RNA-binding protein HuR. Proc. Natl. Acad. Sci. USA 101:2987-2992.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 2987-2992
-
-
Lopez, D.S.1
Zhan, I.M.2
Lal, A.3
Yang, X.4
Gorospe, M.5
-
136
-
-
0035231894
-
Expression monitoring using cDNA microarrays. A general protocol
-
Lou, X. J., M. Schena, F. T. Horrigan, R. M. Lawn, and R. W. Davis. 2001. Expression monitoring using cDNA microarrays. A general protocol. Methods Mol. Biol. 175:323-340.
-
(2001)
Methods Mol. Biol.
, vol.175
, pp. 323-340
-
-
Lou, X.J.1
Schena, M.2
Horrigan, F.T.3
Lawn, R.M.4
Davis, R.W.5
-
137
-
-
4644326931
-
Genomic analysis of regulatory network dynamics reveals large topological changes
-
Luscombe, N. M., M. M. Babu, H. Yu, M. Snyder, S. A. Teichmann, and M. Gerstein. 2004. Genomic analysis of regulatory network dynamics reveals large topological changes. Nature 431:308-312.
-
(2004)
Nature
, vol.431
, pp. 308-312
-
-
Luscombe, N.M.1
Babu, M.M.2
Yu, H.3
Snyder, M.4
Teichmann, S.A.5
Gerstein, M.6
-
138
-
-
0036898579
-
Protein microarrays and proteomics
-
MacBeath, G. 2002. Protein microarrays and proteomics. Nat. Genet. 32(Suppl.):526-532.
-
(2002)
Nat. Genet.
, vol.32
, Issue.SUPPL.
, pp. 526-532
-
-
MacBeath, G.1
-
139
-
-
0034622925
-
Printing proteins as microarrays for high-throughput function determination
-
MacBeath, G., and S. L. Schreiber. 2000. Printing proteins as microarrays for high-throughput function determination. Science 289:1760-1763.
-
(2000)
Science
, vol.289
, pp. 1760-1763
-
-
MacBeath, G.1
Schreiber, S.L.2
-
140
-
-
0037440734
-
Evolution of transcription factors and the gene regulatory network in Escherichia coli
-
Madan, B. M., and S. A. Teichmann. 2003. Evolution of transcription factors and the gene regulatory network in Escherichia coli. Nucleic Acids Res. 31:1234-1244.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1234-1244
-
-
Madan, B.M.1
Teichmann, S.A.2
-
141
-
-
0035100582
-
Regulation of RpoS by a novel small RNA: The characterization of RprA
-
Majdalani, N., S. Chen, J. Murrow, J. K. St, and S. Gottesman. 2001. Regulation of RpoS by a novel small RNA: the characterization of RprA. Mol. Microbiol. 39:1382-1394.
-
(2001)
Mol. Microbiol.
, vol.39
, pp. 1382-1394
-
-
Majdalani, N.1
Chen, S.2
Murrow, J.3
Gottesman, S.4
-
142
-
-
0036437019
-
Regulation and mode of action of the second small RNA activator of RpoS translation, RprA
-
Majdalani, N., D. Hernandez, and S. Gottesman. 2002. Regulation and mode of action of the second small RNA activator of RpoS translation, RprA. Mol. Microbiol. 46:813-826.
-
(2002)
Mol. Microbiol.
, vol.46
, pp. 813-826
-
-
Majdalani, N.1
Hernandez, D.2
Gottesman, S.3
-
143
-
-
0038391517
-
Engineering a mevalonate pathway in Escherichia coli for production of terpenoids
-
Martin, V. J., D. J. Pitera, S. T. Withers, J. D. Newman, and J. D. Keasling. 2003. Engineering a mevalonate pathway in Escherichia coli for production of terpenoids. Nat. Biotechnol. 21:796-802.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 796-802
-
-
Martin, V.J.1
Pitera, D.J.2
Withers, S.T.3
Newman, J.D.4
Keasling, J.D.5
-
144
-
-
0242386460
-
Identifying global regulators in transcriptional regulatory networks in bacteria
-
Martinez-Antonio, A., and J. Collado-Vides. 2003. Identifying global regulators in transcriptional regulatory networks in bacteria. Curr. Opin. Microbiol. 6:482-489.
-
(2003)
Curr. Opin. Microbiol.
, vol.6
, pp. 482-489
-
-
Martinez-Antonio, A.1
Collado-Vides, J.2
-
145
-
-
0036729529
-
The transcriptional program of meiosis and sporulation in fission yeast
-
Mata, J., R. Lyne, G. Burns, and J. Bahler. 2002. The transcriptional program of meiosis and sporulation in fission yeast. Nat. Genet. 32:143-147.
-
(2002)
Nat. Genet.
, vol.32
, pp. 143-147
-
-
Mata, J.1
Lyne, R.2
Burns, G.3
Bahler, J.4
-
146
-
-
0033855132
-
Tuning of the porin expression under anaerobic growth conditions by his-to-Asp cross-phosphorelay through both the EnvZ-osmosensor and ArcB-anaerosensor in Escherichia coli
-
Matsubara, M., S. I. Kitaoka, S. I. Takeda, and T. Mizuno. 2000. Tuning of the porin expression under anaerobic growth conditions by his-to-Asp cross-phosphorelay through both the EnvZ-osmosensor and ArcB-anaerosensor in Escherichia coli. Genes Cells. 5:555-569.
-
(2000)
Genes Cells.
, vol.5
, pp. 555-569
-
-
Matsubara, M.1
Kitaoka, S.I.2
Takeda, S.I.3
Mizuno, T.4
-
147
-
-
9144242935
-
MIPS: Analysis and annotation of proteins from whole genomes
-
Mewes, H. W., C. Amid, R. Arnold, D. Frishman, U. Guldener, G. Mannhaupt, M. Munsterkotter, P. Pagel, N. Strack, V. Stumpflen, J. Warfsmann, and A. Ruepp. 2004. MIPS: analysis and annotation of proteins from whole genomes. Nucleic Acids Res. 32:D41-D44.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Mewes, H.W.1
Amid, C.2
Arnold, R.3
Frishman, D.4
Guldener, U.5
Mannhaupt, G.6
Munsterkotter, M.7
Pagel, P.8
Strack, N.9
Stumpflen, V.10
Warfsmann, J.11
Ruepp, A.12
-
148
-
-
0031589010
-
Compilation of all genes encoding two-component phosphotransfer signal transducers in the genome of Escherichia coli
-
Mizuno, T. 1997. Compilation of all genes encoding two-component phosphotransfer signal transducers in the genome of Escherichia coli. DNA Res. 4:161-168.
-
(1997)
DNA Res.
, vol.4
, pp. 161-168
-
-
Mizuno, T.1
-
149
-
-
0142030030
-
Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay
-
Mohanty, B. K., and S. R. Kushner. 2003. Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay. Mol. Microbiol. 50:645-658.
-
(2003)
Mol. Microbiol.
, vol.50
, pp. 645-658
-
-
Mohanty, B.K.1
Kushner, S.R.2
-
150
-
-
1242318677
-
Transcriptome and proteome analysis of Bacillus subtilis gene expression in response to superoxide and peroxide stress
-
Mostertz, J., C. Scharf, M. Hecker, and G. Homuth. 2004. Transcriptome and proteome analysis of Bacillus subtilis gene expression in response to superoxide and peroxide stress. Microbiology 150:497-512.
-
(2004)
Microbiology
, vol.150
, pp. 497-512
-
-
Mostertz, J.1
Scharf, C.2
Hecker, M.3
Homuth, G.4
-
151
-
-
8844248005
-
Prediction of lymph node metastasis and perineural invasion of biliary tract cancer by selected features from cDNA array data
-
Murakawa, K., M. Tada, M. Takada, E. Tamoto, G. Shindoh, K. Teramoto, A. Matsunaga, K. Komuro, M. Kanai, A. Kawakami, Y. Fujiwara, N. Kobayashi, K. Shirata, N. Nishimura, S. Okushiba, S. Kondo, J. Hamada, H. Katoh, T. Yoshiki, and T. Moriuchi. 2004. Prediction of lymph node metastasis and perineural invasion of biliary tract cancer by selected features from cDNA array data. J. Surg. Res. 122:184-194.
-
(2004)
J. Surg. Res.
, vol.122
, pp. 184-194
-
-
Murakawa, K.1
Tada, M.2
Takada, M.3
Tamoto, E.4
Shindoh, G.5
Teramoto, K.6
Matsunaga, A.7
Komuro, K.8
Kanai, M.9
Kawakami, A.10
Fujiwara, Y.11
Kobayashi, N.12
Shirata, K.13
Nishimura, N.14
Okushiba, S.15
Kondo, S.16
Hamada, J.17
Katoh, H.18
Yoshiki, T.19
Moriuchi, T.20
more..
-
152
-
-
0028577728
-
Targeting of the polyhydroxybutyrate biosynthetic pathway to the plastids of Arabidopsis thaliana results in high levels of polymer accumulation
-
Nawrath, C., Y. Poirier, and C. Somerville. 1994. Targeting of the polyhydroxybutyrate biosynthetic pathway to the plastids of Arabidopsis thaliana results in high levels of polymer accumulation. Proc. Natl. Acad. Sci. USA 91:12760-12764.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 12760-12764
-
-
Nawrath, C.1
Poirier, Y.2
Somerville, C.3
-
153
-
-
0003742927
-
-
Sinauer Associates, Sunderland, Mass.
-
Neidhardt, F. C., J. L. Ingraham, and M. Schaechter. 1990. Physiology of the bacterial cell: a molecular approach. Sinauer Associates, Sunderland, Mass.
-
(1990)
Physiology of the Bacterial Cell: A Molecular Approach
-
-
Neidhardt, F.C.1
Ingraham, J.L.2
Schaechter, M.3
-
154
-
-
0037595546
-
Comprehensive identification of human bZIP interactions with coiled-coil arrays
-
Newman, J. R., and A. E. Keating. 2003. Comprehensive identification of human bZIP interactions with coiled-coil arrays. Science 300:2097-2101.
-
(2003)
Science
, vol.300
, pp. 2097-2101
-
-
Newman, J.R.1
Keating, A.E.2
-
155
-
-
0347506028
-
It is all about metabolic fluxes
-
Nielsen, J. 2003. It is all about metabolic fluxes. J. Bacteriol. 185:7031-7035.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 7031-7035
-
-
Nielsen, J.1
-
156
-
-
1342346607
-
Role of histone-like protein H-NS in multidrug resistance of Escherichia coli
-
Nishino, K., and A. Yamaguchi. 2004. Role of histone-like protein H-NS in multidrug resistance of Escherichia coli. J. Bacteriol. 186:1423-1429.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 1423-1429
-
-
Nishino, K.1
Yamaguchi, A.2
-
157
-
-
0028558718
-
Histones, HMG, HU, IHF: Meme combat
-
Oberto, J., K. Drlica, and J. Rouviere-Yaniv. 1994. Histones, HMG, HU, IHF: Meme combat. Biochimie 76:901-908.
-
(1994)
Biochimie
, vol.76
, pp. 901-908
-
-
Oberto, J.1
Drlica, K.2
Rouviere-Yaniv, J.3
-
158
-
-
0032168794
-
Systematic functional analysis of the yeast genome
-
Oliver, S. G., M. K. Winson, D. B. Kell, and F. Baganz. 1998. Systematic functional analysis of the yeast genome. Trends Biotechnol. 16:373-378.
-
(1998)
Trends Biotechnol.
, vol.16
, pp. 373-378
-
-
Oliver, S.G.1
Winson, M.K.2
Kell, D.B.3
Baganz, F.4
-
159
-
-
0034161329
-
Mapping chromosomal proteins in vivo by formaldehyde-crosslinked- chromatin immunoprecipitation
-
Orlando, V. 2000. Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation. Trends Biochem. Sci. 25:99-104.
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 99-104
-
-
Orlando, V.1
-
160
-
-
0036033707
-
Transcriptome analysis of all two-component regulatory system mutants of Escherichia coli K-12
-
Oshima, T., H. Aiba, Y. Masuda, S. Kanaya, M. Sugiura, B. L. Wanner, H. Mori, and T. Mizuno. 2002. Transcriptome analysis of all two-component regulatory system mutants of Escherichia coli K-12. Mol. Microbiol. 46: 281-291.
-
(2002)
Mol. Microbiol.
, vol.46
, pp. 281-291
-
-
Oshima, T.1
Aiba, H.2
Masuda, Y.3
Kanaya, S.4
Sugiura, M.5
Wanner, B.L.6
Mori, H.7
Mizuno, T.8
-
161
-
-
0033664269
-
Increasing galactose consumption by Saccharomyces cerevisiae through metabolic engineering of the GAL gene regulatory network
-
Ostergaard, S., L. Olsson, M. Johnston, and J. Nielsen. 2000. Increasing galactose consumption by Saccharomyces cerevisiae through metabolic engineering of the GAL gene regulatory network. Nat. Biotechnol. 18:1283-1286.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 1283-1286
-
-
Ostergaard, S.1
Olsson, L.2
Johnston, M.3
Nielsen, J.4
-
162
-
-
0036197752
-
RNase E levels in Escherichia coli are controlled by a complex regulatory system that involves transcription of the me gene from three promoters
-
Ow, M. C., Q. Liu, B. K. Mohanty, M. E. Andrew, V. F. Maples, and S. R. Kushner. 2002. RNase E levels in Escherichia coli are controlled by a complex regulatory system that involves transcription of the me gene from three promoters. Mol. Microbiol. 43:159-171.
-
(2002)
Mol. Microbiol.
, vol.43
, pp. 159-171
-
-
Ow, M.C.1
Liu, Q.2
Mohanty, B.K.3
Andrew, M.E.4
Maples, V.F.5
Kushner, S.R.6
-
163
-
-
4444353693
-
Kernel-based self-organized maps trained with supervised bias for gene expression data analysis
-
Papadimitriou, S., and S. D. Likothanassis. 2004. Kernel-based self-organized maps trained with supervised bias for gene expression data analysis. J. Bioinform. Comput. Biol. 1:647-680.
-
(2004)
J. Bioinform. Comput. Biol.
, vol.1
, pp. 647-680
-
-
Papadimitriou, S.1
Likothanassis, S.D.2
-
164
-
-
3543135393
-
Response of Saccharomyces cerevisiae to a monoterpene: Evaluation of antifungal potential by DNA microarray analysis
-
Parveen, M., M. K. Hasan, J. Takahashi, Y. Murata, E. Kitagawa, O. Kodama, and H. Iwahashi. 2004. Response of Saccharomyces cerevisiae to a monoterpene: evaluation of antifungal potential by DNA microarray analysis. J. Antimicrob. Chemother. 54:46-55.
-
(2004)
J. Antimicrob. Chemother.
, vol.54
, pp. 46-55
-
-
Parveen, M.1
Hasan, M.K.2
Takahashi, J.3
Murata, Y.4
Kitagawa, E.5
Kodama, O.6
Iwahashi, H.7
-
165
-
-
14544268137
-
Uncovering transcriptional regulation of metabolism by using metabolic network topology
-
Patil, K. R., and J. Nielsen. 2005. Uncovering transcriptional regulation of metabolism by using metabolic network topology. Proc. Natl. Acad. Sci. USA 102:2685-2689.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 2685-2689
-
-
Patil, K.R.1
Nielsen, J.2
-
166
-
-
0037370373
-
Proteomics: The first decade and beyond
-
Patterson, S. D., and R. H. Aebersold. 2003. Proteomics: the first decade and beyond. Nat. Genet. 33(Suppl.):311-323.
-
(2003)
Nat. Genet.
, vol.33
, Issue.SUPPL.
, pp. 311-323
-
-
Patterson, S.D.1
Aebersold, R.H.2
-
169
-
-
0346156102
-
Detection of functional modules from protein interaction networks
-
Pereira-Leal, J. B., A. J. Enright, and C. A. Ouzounis. 2004. Detection of functional modules from protein interaction networks. Proteins 54:49-57.
-
(2004)
Proteins
, vol.54
, pp. 49-57
-
-
Pereira-Leal, J.B.1
Enright, A.J.2
Ouzounis, C.A.3
-
170
-
-
0029922992
-
A DEAD-box RNA helicase in the Escherichia coli RNA degradosome
-
Py, B., C. F. Higgins, H. M. Krisch, and A. J. Carpousis. 1996. A DEAD-box RNA helicase in the Escherichia coli RNA degradosome. Nature 381: 169-172.
-
(1996)
Nature
, vol.381
, pp. 169-172
-
-
Py, B.1
Higgins, C.F.2
Krisch, H.M.3
Carpousis, A.J.4
-
171
-
-
0035160371
-
A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations
-
Raamsdonk, L. M., B. Teusink, D. Broadhurst, N. Zhang, A. Hayes, M. C. Walsh, J. A. Berden, K. M. Brindle, D. B. Kell, J. J. Rowland, H. V. Westerhoff, K. van Dam, and S. G. Oliver. 2001. A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations. Nat. Biotechnol. 19:45-50.
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 45-50
-
-
Raamsdonk, L.M.1
Teusink, B.2
Broadhurst, D.3
Zhang, N.4
Hayes, A.5
Walsh, M.C.6
Berden, J.A.7
Brindle, K.M.8
Kell, D.B.9
Rowland, J.J.10
Westerhoff, H.V.11
Van Dam, K.12
Oliver, S.G.13
-
172
-
-
0037115826
-
Genome-wide analysis of mRNA decay in resting and activated primary human T lymphocytes
-
Raghavan, A., R. L. Ogilvie, C. Reilly, M. L. Abelson, S. Raghavan, J. Vasdewani, M. Krathwohl, and P. R. Bohjanen. 2002. Genome-wide analysis of mRNA decay in resting and activated primary human T lymphocytes. Nucleic Acids Res. 30:5529-5538.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 5529-5538
-
-
Raghavan, A.1
Ogilvie, R.L.2
Reilly, C.3
Abelson, M.L.4
Raghavan, S.5
Vasdewani, J.6
Krathwohl, M.7
Bohjanen, P.R.8
-
173
-
-
3042757210
-
Self-assembling protein microarrays
-
Ramachandran, N., E. Hainsworth, B. Bhullar, S. Eisenstein, B. Rosen, A. Y. Lau, J. C. Walter, and J. LaBaer. 2004. Self-assembling protein microarrays. Science 305:86-90.
-
(2004)
Science
, vol.305
, pp. 86-90
-
-
Ramachandran, N.1
Hainsworth, E.2
Bhullar, B.3
Eisenstein, S.4
Rosen, B.5
Lau, A.Y.6
Walter, J.C.7
Labaer, J.8
-
174
-
-
0037370399
-
The study of macromolecular complexes by quantitative proteomics
-
Ranish, J. A., E. C. Yi, D. M. Leslie, S. O. Purvine, D. R. Goodlett, J. Eng, and R. Aebersold. 2003. The study of macromolecular complexes by quantitative proteomics. Nat. Genet. 33:349-355.
-
(2003)
Nat. Genet.
, vol.33
, pp. 349-355
-
-
Ranish, J.A.1
Yi, E.C.2
Leslie, D.M.3
Purvine, S.O.4
Goodlett, D.R.5
Eng, J.6
Aebersold, R.7
-
175
-
-
0037199968
-
Hierarchical organization of modularity in metabolic networks
-
Ravasz, E., A. L. Somera, D. A. Mongru, Z. N. Oltvai, and A. L. Barabasi. 2002. Hierarchical organization of modularity in metabolic networks. Science 297:1551-1555.
-
(2002)
Science
, vol.297
, pp. 1551-1555
-
-
Ravasz, E.1
Somera, A.L.2
Mongru, D.A.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
176
-
-
0037406843
-
Thirteen years of building constraint-based in silico models of Escherichia coli
-
Reed, J. L., and B. O. Palsson. 2003. Thirteen years of building constraint-based in silico models of Escherichia coli. J. Bacteriol. 185:2692-2699.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 2692-2699
-
-
Reed, J.L.1
Palsson, B.O.2
-
177
-
-
0344328817
-
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
-
Reed, J. L., T. D. Vo, C. H. Schilling, and B. O. Palsson. 2003. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Genome Biol. 4:R54.
-
(2003)
Genome Biol.
, vol.4
-
-
Reed, J.L.1
Vo, T.D.2
Schilling, C.H.3
Palsson, B.O.4
-
178
-
-
0034704248
-
Genome-wide location and function of DNA binding proteins
-
Ren, B., F. Robert, J. J. Wyrick, O. Aparicio, E. G. Jennings, I. Simon, J. Zeitlinger, J. Schreiber, N. Hannett, E. Kanin, T. L. Volkert, C. J. Wilson, S. P. Bell, and R. A. Young. 2000. Genome-wide location and function of DNA binding proteins. Science 290:2306-2309.
-
(2000)
Science
, vol.290
, pp. 2306-2309
-
-
Ren, B.1
Robert, F.2
Wyrick, J.J.3
Aparicio, O.4
Jennings, E.G.5
Simon, I.6
Zeitlinger, J.7
Schreiber, J.8
Hannett, N.9
Kanin, E.10
Volkert, T.L.11
Wilson, C.J.12
Bell, S.P.13
Young, R.A.14
-
179
-
-
1642418867
-
Protective role for H-NS protein in IS1 transposition
-
Rouquette, C., M. C. Serre, and D. Lane. 2004. Protective role for H-NS protein in IS1 transposition. J. Bacteriol. 186:2091-2098.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 2091-2098
-
-
Rouquette, C.1
Serre, M.C.2
Lane, D.3
-
180
-
-
11144234660
-
Global network analysis of phenotypic effects: Protein networks and toxicity modulation in Saccharomyces cerevisiae
-
Said, M. R., T. J. Begley, A. V. Oppenheim, D. A. Lauffenburger, and L. D. Samson. 2004. Global network analysis of phenotypic effects: protein networks and toxicity modulation in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 101:18006-18011.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 18006-18011
-
-
Said, M.R.1
Begley, T.J.2
Oppenheim, A.V.3
Lauffenburger, D.A.4
Samson, L.D.5
-
181
-
-
9144270496
-
RegulonDB (version 4.0): Transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12
-
database issue
-
Salgado, H., S. Gama-Castro, A. Martinez-Antonio, E. az-Peredo, F. Sanchez-Solano, M. Peralta-Gil, D. Garcia-Alonso, V. Jimenez-Jacinto, A. Santos-Zavaleta, C. Bonavides-Martinez, and J. Collado-Vides. 2004. RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12. Nucleic Acids Res. 32(database issue):D303-D306.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Salgado, H.1
Gama-Castro, S.2
Martinez-Antonio, A.3
Az-Peredo, E.4
Sanchez-Solano, F.5
Peralta-Gil, M.6
Garcia-Alonso, D.7
Jimenez-Jacinto, V.8
Santos-Zavaleta, A.9
Bonavides-Martinez, C.10
Collado-Vides, J.11
-
182
-
-
17644381300
-
Global gene expression profiling in Escherichia coli K12: The effects of oxygen availability and ArcA
-
Salmon, K. A., S. P. Hung, N. R. Steffan, R. Krupp, P. Baldi, G. W. Hatfield, and R. P. Gunsalus. 2005. Global gene expression profiling in Escherichia coli K12: the effects of oxygen availability and ArcA. J. Biol. Chem. 280: 15084-15096.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 15084-15096
-
-
Salmon, K.A.1
Hung, S.P.2
Steffan, N.R.3
Krupp, R.4
Baldi, P.5
Hatfield, G.W.6
Gunsalus, R.P.7
-
183
-
-
1242306261
-
High-throughput phenomics: Experimental methods for mapping fluxomes
-
Sauer, U. 2004. High-throughput phenomics: experimental methods for mapping fluxomes. Curr. Opin. Biotechnol. 15:58-63.
-
(2004)
Curr. Opin. Biotechnol.
, vol.15
, pp. 58-63
-
-
Sauer, U.1
-
184
-
-
0031004921
-
Metabolic fluxes in riboflavin-producing Bacillus subtilis
-
Sauer, U., V. Hatzimanikatis, J. E. Bailey, M. Hochuli, T. Szyperski, and K. Wuthrich. 1997. Metabolic fluxes in riboflavin-producing Bacillus subtilis. Nat. Biotechnol. 15:448-452.
-
(1997)
Nat. Biotechnol.
, vol.15
, pp. 448-452
-
-
Sauer, U.1
Hatzimanikatis, V.2
Bailey, J.E.3
Hochuli, M.4
Szyperski, T.5
Wuthrich, K.6
-
185
-
-
0001140586
-
Dependency on medium and temperature of cell size and chemical composition during balanced grown of Salmonella typhimurium
-
Schaechter, M., O. Maaloe, and N. O. Kjeldgaard. 1958. Dependency on medium and temperature of cell size and chemical composition during balanced grown of Salmonella typhimurium. J. Gen. Microbiol. 19:592-606.
-
(1958)
J. Gen. Microbiol.
, vol.19
, pp. 592-606
-
-
Schaechter, M.1
Maaloe, O.2
Kjeldgaard, N.O.3
-
186
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena, M., D. Shalon, R. W. Davis, and P. O. Brown. 1995. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270:467-470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
187
-
-
0036330798
-
Genome-scale metabolic model of Helicobacter pylori 26695
-
Schilling, C. H., M. W. Covert, I. Famili, G. M. Church, J. S. Edwards, and B. O. Palsson. 2002. Genome-scale metabolic model of Helicobacter pylori 26695. J. Bacteriol. 184:4582-4593.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 4582-4593
-
-
Schilling, C.H.1
Covert, M.W.2
Famili, I.3
Church, G.M.4
Edwards, J.S.5
Palsson, B.O.6
-
188
-
-
0034447725
-
Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems
-
Schilling, C. H., J. S. Edwards, D. Letscher, and B. O. Palsson. 2000. Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems. Biotechnol. Bioeng. 71:286-306.
-
(2000)
Biotechnol. Bioeng.
, vol.71
, pp. 286-306
-
-
Schilling, C.H.1
Edwards, J.S.2
Letscher, D.3
Palsson, B.O.4
-
189
-
-
0037783314
-
Translational repression mechanisms in prokaryotes
-
Schlax, P. J., and D. J. Worhunsky. 2003. Translational repression mechanisms in prokaryotes. Mol. Microbiol. 48:1157-1169.
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 1157-1169
-
-
Schlax, P.J.1
Worhunsky, D.J.2
-
190
-
-
0242407063
-
Microarrays to characterize protein interactions on a whole-proteome scale
-
Schweitzer, B., P. Predki, and M. Snyder. 2003. Microarrays to characterize protein interactions on a whole-proteome scale. Proteomics 3:2190-2499.
-
(2003)
Proteomics
, vol.3
, pp. 2190-2499
-
-
Schweitzer, B.1
Predki, P.2
Snyder, M.3
-
191
-
-
0033669189
-
A network of protein-protein interactions in yeast
-
Schwikowski, B., P. Uetz, and S. Fields. 2000. A network of protein-protein interactions in yeast. Nat. Biotechnol. 18:1257-1261.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 1257-1261
-
-
Schwikowski, B.1
Uetz, P.2
Fields, S.3
-
192
-
-
0030911425
-
Mex67p, a novel factor for nuclear mRNA export, binds to both poly(A)+ RNA and nuclear pores
-
Segref, A., K. Sharma, V. Doye, A. Hellwig, J. Huber, R. Luhrmann, and E. Hurt. 1997. Mex67p, a novel factor for nuclear mRNA export, binds to both poly(A)+ RNA and nuclear pores. EMBO J. 16:3256-3271.
-
(1997)
EMBO J.
, vol.16
, pp. 3256-3271
-
-
Segref, A.1
Sharma, K.2
Doye, V.3
Hellwig, A.4
Huber, J.5
Luhrmann, R.6
Hurt, E.7
-
193
-
-
0042697666
-
Comparison of the changes in global gene expression of Escherichia coli induced by four bactericidal agents
-
Shaw, K. J., N. Miller, X. Liu, D. Lerner, J. Wan, A. Bittner, and B. J. Morrow. 2003. Comparison of the changes in global gene expression of Escherichia coli induced by four bactericidal agents. J. Mol. Microbiol. Biotechnol. 5:105-122.
-
(2003)
J. Mol. Microbiol. Biotechnol.
, vol.5
, pp. 105-122
-
-
Shaw, K.J.1
Miller, N.2
Liu, X.3
Lerner, D.4
Wan, J.5
Bittner, A.6
Morrow, B.J.7
-
194
-
-
0141482078
-
Widespread cytoplasmic mRNA transport in yeast: Identification of 22 bud-localized transcripts using DNA microarray analysis
-
Shepard, K. A., A. P. Gerber, A. Jambhekar, P. A. Takizawa, P. O. Brown, D. Herschlag, J. L. DeRisi, and R. D. Vale. 2003. Widespread cytoplasmic mRNA transport in yeast: identification of 22 bud-localized transcripts using DNA microarray analysis. Proc. Natl. Acad. Sci. USA 100:11429-11434.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 11429-11434
-
-
Shepard, K.A.1
Gerber, A.P.2
Jambhekar, A.3
Takizawa, P.A.4
Brown, P.O.5
Herschlag, D.6
Derisi, J.L.7
Vale, R.D.8
-
195
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
Spellman, P. T., G. Sherlock, M. Q. Zhang, V. R. Iyer, K. Anders, M. B. Eisen, P. O. Brown, D. Botstein, and B. Futcher. 1998. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell. 9:3273-3297.
-
(1998)
Mol. Biol. Cell.
, vol.9
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Botstein, D.8
Futcher, B.9
-
196
-
-
0037079050
-
Metabolic network structure determines key aspects of functionality and regulation
-
Stelling, J., S. Klamt, K. Bettenbrock, S. Schuster, and E. D. Gilles. 2002. Metabolic network structure determines key aspects of functionality and regulation. Nature 420:190-193.
-
(2002)
Nature
, vol.420
, pp. 190-193
-
-
Stelling, J.1
Klamt, S.2
Bettenbrock, K.3
Schuster, S.4
Gilles, E.D.5
-
197
-
-
0025866296
-
Network rigidity and metabolic engineering in metabolite overproduction
-
Stephanopoulos, G., and J. J. Vallino. 1991. Network rigidity and metabolic engineering in metabolite overproduction. Science 252:1675-1681.
-
(1991)
Science
, vol.252
, pp. 1675-1681
-
-
Stephanopoulos, G.1
Vallino, J.J.2
-
199
-
-
4444286925
-
Normalization of single-channel DNA array data by principal component analysis
-
Stoyanova, R., T. D. Querec, T. R. Brown, and C. Patriotis. 2004. Normalization of single-channel DNA array data by principal component analysis. Bioinformatics 20:1772-1784.
-
(2004)
Bioinformatics
, vol.20
, pp. 1772-1784
-
-
Stoyanova, R.1
Querec, T.D.2
Brown, T.R.3
Patriotis, C.4
-
200
-
-
0038697629
-
The interplay of nuclear mRNP assembly, mRNA surveillance and export
-
Stutz, F., and E. Izaurralde. 2003. The interplay of nuclear mRNP assembly, mRNA surveillance and export. Trends Cell Biol. 13:319-327.
-
(2003)
Trends Cell Biol.
, vol.13
, pp. 319-327
-
-
Stutz, F.1
Izaurralde, E.2
-
201
-
-
0031594984
-
13C-NMR, MS and metabolic flux balancing in biotechnology research
-
Szyperski, T. 1998. 13C-NMR, MS and metabolic flux balancing in biotechnology research. Q. Rev. Biophys. 31:41-106.
-
(1998)
Q. Rev. Biophys.
, vol.31
, pp. 41-106
-
-
Szyperski, T.1
-
202
-
-
0029146299
-
Biosynthetically directed fractional 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism
-
Szyperski, T. 1995. Biosynthetically directed fractional 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism. Eur. J. Biochem. 232:433-448.
-
(1995)
Eur. J. Biochem.
, vol.232
, pp. 433-448
-
-
Szyperski, T.1
-
203
-
-
0034644626
-
Plasma membrane compartmentalization in yeast by messenger RNA transport and a septin diffusion barrier
-
Takizawa, P. A., J. L. DeRisi, J. E. Wilhelm, and R. D. Vale. 2000. Plasma membrane compartmentalization in yeast by messenger RNA transport and a septin diffusion barrier. Science 290:341-344.
-
(2000)
Science
, vol.290
, pp. 341-344
-
-
Takizawa, P.A.1
Derisi, J.L.2
Wilhelm, J.E.3
Vale, R.D.4
-
204
-
-
14644388890
-
Making connections between novel transcription factors and their DNA motifs
-
Tan, K., L. A. McCue, and G. D. Stormo. 2005. Making connections between novel transcription factors and their DNA motifs. Genome Res. 15:312-320.
-
(2005)
Genome Res.
, vol.15
, pp. 312-320
-
-
Tan, K.1
McCue, L.A.2
Stormo, G.D.3
-
205
-
-
0037109068
-
Adaptation to famine: A family of stationary-phase genes revealed by microarray analysis
-
Tani, T. H., A. Khodursky, R. M. Blumenthal, P. O. Brown, and R. G. Matthews. 2002. Adaptation to famine: a family of stationary-phase genes revealed by microarray analysis. Proc. Natl. Acad. Sci. USA 99:13471-13476.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 13471-13476
-
-
Tani, T.H.1
Khodursky, A.2
Blumenthal, R.M.3
Brown, P.O.4
Matthews, R.G.5
-
206
-
-
0034967661
-
Disruption of a global regulatory gene to enhance central carbon flux into phenylalanine biosynthesis in Escherichia coli
-
Tatarko, M., and T. Romeo. 2001. Disruption of a global regulatory gene to enhance central carbon flux into phenylalanine biosynthesis in Escherichia coli. Curr. Microbiol. 43:26-32.
-
(2001)
Curr. Microbiol.
, vol.43
, pp. 26-32
-
-
Tatarko, M.1
Romeo, T.2
-
207
-
-
0033028596
-
Systematic determination of genetic network architecture
-
Tavazoie, S., J. D. Hughes, M. J. Campbell, R. J. Cho, and G. M. Church. 1999. Systematic determination of genetic network architecture. Nat. Genet. 22:281-285.
-
(1999)
Nat. Genet.
, vol.22
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.D.2
Campbell, M.J.3
Cho, R.J.4
Church, G.M.5
-
208
-
-
2942558358
-
Protein microarrays and multiplexed sandwich immunoassays: What beats the beads?
-
Templin, M. F., D. Stoll, J. Bachmann, and T. O. Joos. 2004. Protein microarrays and multiplexed sandwich immunoassays: what beats the beads? Comb. Chem. High Throughput Screen. 7:223-229.
-
(2004)
Comb. Chem. High Throughput Screen.
, vol.7
, pp. 223-229
-
-
Templin, M.F.1
Stoll, D.2
Bachmann, J.3
Joos, T.O.4
-
209
-
-
0036532511
-
Protein microarray technology
-
Templin, M. F., D. Stoll, M. Schrenk, P. C. Traub, C. F. Vohringer, and T. O. Joos. 2002. Protein microarray technology. Trends Biotechnol. 20: 160-166.
-
(2002)
Trends Biotechnol.
, vol.20
, pp. 160-166
-
-
Templin, M.F.1
Stoll, D.2
Schrenk, M.3
Traub, P.C.4
Vohringer, C.F.5
Joos, T.O.6
-
210
-
-
0242608332
-
Protein microarrays: Promising tools for proteomic research
-
Templin, M. F., D. Stoll, J. M. Schwenk, O. Potz, S. Kramer, and T. O. Joos. 2003. Protein microarrays: promising tools for proteomic research. Proteomics 3:2155-2166.
-
(2003)
Proteomics
, vol.3
, pp. 2155-2166
-
-
Templin, M.F.1
Stoll, D.2
Schwenk, J.M.3
Potz, O.4
Kramer, S.5
Joos, T.O.6
-
211
-
-
0034687794
-
Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays
-
Tenenbaum, S. A., C. C. Carson, P. J. Lager, and J. D. Keene. 2000. Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays. Proc. Natl. Acad. Sci. USA 97:14085-14090.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 14085-14090
-
-
Tenenbaum, S.A.1
Carson, C.C.2
Lager, P.J.3
Keene, J.D.4
-
212
-
-
0036351379
-
Ribonomics: Identifying mRNA subsets in mRNP complexes using antibodies to RNA-binding proteins and genomic arrays
-
Tenenbaum, S. A., P. J. Lager, C. C. Carson, and J. D. Keene. 2002. Ribonomics: identifying mRNA subsets in mRNP complexes using antibodies to RNA-binding proteins and genomic arrays. Methods 26:191-198.
-
(2002)
Methods
, vol.26
, pp. 191-198
-
-
Tenenbaum, S.A.1
Lager, P.J.2
Carson, C.C.3
Keene, J.D.4
-
213
-
-
0042863923
-
Analysis of gene expression data using self-organizing maps
-
Toronen, P., M. Kolehmainen, G. Wong, and E. Castren. 1999. Analysis of gene expression data using self-organizing maps. FEBS Lett. 451:142-146.
-
(1999)
FEBS Lett.
, vol.451
, pp. 142-146
-
-
Toronen, P.1
Kolehmainen, M.2
Wong, G.3
Castren, E.4
-
214
-
-
0035313629
-
Gene discovery via metabolic profiling
-
Trethewey, R. N. 2001. Gene discovery via metabolic profiling. Curr. Opin. Biotechnol. 12:135-138.
-
(2001)
Curr. Opin. Biotechnol.
, vol.12
, pp. 135-138
-
-
Trethewey, R.N.1
-
216
-
-
0028281964
-
Cloning and characterization of a yeast cytochrome b5-encoding gene which suppresses ketoconazole hypersensitivity in a NADPH-P-450 reductase-deficient strain
-
Truan, G., J. C. Epinat, C. Rougeulle, C. Cullin, and D. Pompon. 1994. Cloning and characterization of a yeast cytochrome b5-encoding gene which suppresses ketoconazole hypersensitivity in a NADPH-P-450 reductase-deficient strain. Gene 142:123-127.
-
(1994)
Gene
, vol.142
, pp. 123-127
-
-
Truan, G.1
Epinat, J.C.2
Rougeulle, C.3
Cullin, C.4
Pompon, D.5
-
217
-
-
0037195138
-
Quantitative noise analysis for gene expression microarray experiments
-
Tu, Y., G. Stolovitzky, and U. Klein. 2002. Quantitative noise analysis for gene expression microarray experiments. Proc. Natl. Acad. Sci. USA 99: 14031-14036.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 14031-14036
-
-
Tu, Y.1
Stolovitzky, G.2
Klein, U.3
-
218
-
-
11144351004
-
GenSo-FDSS: A neural-fuzzy decision support system for pediatric ALL cancer subtype identification using gene expression data
-
Tung, W. L., and C. Quek. 2005. GenSo-FDSS: a neural-fuzzy decision support system for pediatric ALL cancer subtype identification using gene expression data. Artif. Intell. Med. 33:61-88.
-
(2005)
Artif. Intell. Med.
, vol.33
, pp. 61-88
-
-
Tung, W.L.1
Quek, C.2
-
219
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
Uetz, P., L. Giot, G. Cagney, T. A. Mansfield, R. S. Judson, J. R. Knight, D. Lockshon, V. Narayan, M. Srinivasan, P. Pochart, A. Qureshi-Emili, Y. Li, B. Godwin, D. Conover, T. Kalbfleisch, G. Vijayadamodar, M. Yang, M. Johnston, S. Fields, and J. M. Rothberg. 2000. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403:623-627.
-
(2000)
Nature
, vol.403
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, G.3
Mansfield, T.A.4
Judson, R.S.5
Knight, J.R.6
Lockshon, D.7
Narayan, V.8
Srinivasan, M.9
Pochart, P.10
Qureshi-Emili, A.11
Li, Y.12
Godwin, B.13
Conover, D.14
Kalbfleisch, T.15
Vijayadamodar, G.16
Yang, M.17
Johnston, M.18
Fields, S.19
Rothberg, J.M.20
more..
-
220
-
-
0032884023
-
Difference gel electrophoresis
-
Unlu, M. 1999. Difference gel electrophoresis. Biochem. Soc. Trans. 27: 547-549.
-
(1999)
Biochem. Soc. Trans.
, vol.27
, pp. 547-549
-
-
Unlu, M.1
-
221
-
-
0036851381
-
Gene expression data analysis of human lymphoma using support vector machines and output coding ensembles
-
Valentini, G. 2002. Gene expression data analysis of human lymphoma using support vector machines and output coding ensembles. Artif. Intell. Med. 26:281-304.
-
(2002)
Artif. Intell. Med.
, vol.26
, pp. 281-304
-
-
Valentini, G.1
-
222
-
-
8544271637
-
Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system
-
Vanderpool, C. K., and S. Gottesman. 2004. Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system. Mol. Microbiol. 54:1076-1089.
-
(2004)
Mol. Microbiol.
, vol.54
, pp. 1076-1089
-
-
Vanderpool, C.K.1
Gottesman, S.2
-
223
-
-
0037155584
-
Exosome-mediated recognition and degradation of mRNAs lacking a termination codon
-
van Hoof, A., P. A. Frischmeyer, H. C. Dietz, and R. Parker. 2002. Exosome-mediated recognition and degradation of mRNAs lacking a termination codon. Science 295:2262-2264.
-
(2002)
Science
, vol.295
, pp. 2262-2264
-
-
Van Hoof, A.1
Frischmeyer, P.A.2
Dietz, H.C.3
Parker, R.4
-
224
-
-
0141534473
-
Simultaneous analysis of amino and nonamino organic acids as methyl chloroformate derivatives using gas chromatography-mass spectrometry
-
Villas-Boas, S. G., D. G. Delicado, M. Akesson, and J. Nielsen. 2003. Simultaneous analysis of amino and nonamino organic acids as methyl chloroformate derivatives using gas chromatography-mass spectrometry. Anal. Biochem. 322:134-138.
-
(2003)
Anal. Biochem.
, vol.322
, pp. 134-138
-
-
Villas-Boas, S.G.1
Delicado, D.G.2
Akesson, M.3
Nielsen, J.4
-
225
-
-
29244453756
-
Mass spectrometry in metabolome analysis
-
19 August, posting date
-
Villas-Boas, S. G., S. Mas, M. Akesson, J. Smedsgaard, and J. Nielsen. 19 August 2004, posting date. Mass spectrometry in metabolome analysis. Mass Spectrom. Rev. [Online.]
-
(2004)
Mass Spectrom. Rev. [Online]
-
-
Villas-Boas, S.G.1
Mas, S.2
Akesson, M.3
Smedsgaard, J.4
Nielsen, J.5
-
226
-
-
0141446194
-
Identification of mRNAs associated with alphaCP2-containing RNP complexes
-
Waggoner, S. A., and S. A. Liebhaber. 2003. Identification of mRNAs associated with alphaCP2-containing RNP complexes. Mol. Cell. Biol. 23: 7055-7067.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 7055-7067
-
-
Waggoner, S.A.1
Liebhaber, S.A.2
-
227
-
-
2942756043
-
Serial 13C-based flux analysis of an L-phenylalanine-producing E. coli strain using the sensor reactor
-
Wahl, A., M. El Massaoudi, D. Schipper, W. Wiechert, and R. Takors. 2004. Serial 13C-based flux analysis of an L-phenylalanine-producing E. coli strain using the sensor reactor. Biotechnol. Prog. 20:706-714.
-
(2004)
Biotechnol. Prog.
, vol.20
, pp. 706-714
-
-
Wahl, A.1
El Massaoudi, M.2
Schipper, D.3
Wiechert, W.4
Takors, R.5
-
228
-
-
0034614678
-
Protein interaction mapping in C. elegans using proteins involved in vulval development
-
Walhout, A. J., R. Sordella, X. Lu, J. L. Hartley, G. F. Temple, M. A. Brasch, N. Thierry-Mieg, and M. Vidal. 2000. Protein interaction mapping in C. elegans using proteins involved in vulval development. Science 287: 116-122.
-
(2000)
Science
, vol.287
, pp. 116-122
-
-
Walhout, A.J.1
Sordella, R.2
Lu, X.3
Hartley, J.L.4
Temple, G.F.5
Brasch, M.A.6
Thierry-Mieg, N.7
Vidal, M.8
-
229
-
-
0343674504
-
Protein arrays for gene expression and molecular interaction screening
-
Walter, G., K. Bussow, D. Cahill, A. Lueking, and H. Lehrach. 2000. Protein arrays for gene expression and molecular interaction screening. Curr. Opin. Microbiol. 3:298-302.
-
(2000)
Curr. Opin. Microbiol.
, vol.3
, pp. 298-302
-
-
Walter, G.1
Bussow, K.2
Cahill, D.3
Lueking, A.4
Lehrach, H.5
-
230
-
-
9344257332
-
Normalization of cDNA microarray data using wavelet regressions
-
Wang, J., J. Z. Ma, and M. D. Li. 2004. Normalization of cDNA microarray data using wavelet regressions. Comb. Chem. High Throughput Screen. 7:783-791.
-
(2004)
Comb. Chem. High Throughput Screen.
, vol.7
, pp. 783-791
-
-
Wang, J.1
Ma, J.Z.2
Li, M.D.3
-
231
-
-
0037197892
-
Precision and functional specificity in mRNA decay
-
Wang, Y., C. L. Liu, J. D. Storey, R. J. Tibshirani, D. Herschlag, and P. O. Brown. 2002. Precision and functional specificity in mRNA decay. Proc. Natl. Acad. Sci. USA 99:5860-5865.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 5860-5865
-
-
Wang, Y.1
Liu, C.L.2
Storey, J.D.3
Tibshirani, R.J.4
Herschlag, D.5
Brown, P.O.6
-
232
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification technology
-
Washburn, M. P., D. Wolters, and J. R. Yates III. 2001. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 19:242-247.
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 242-247
-
-
Washburn, M.P.1
Wolters, D.2
Yates III, J.R.3
-
233
-
-
0142040405
-
Metabolomics in systems biology
-
Weckwerth, W. 2003. Metabolomics in systems biology. Annu. Rev. Plant Biol. 54:669-689.
-
(2003)
Annu. Rev. Plant Biol.
, vol.54
, pp. 669-689
-
-
Weckwerth, W.1
-
234
-
-
3142783423
-
Protein arrays from cDNA expression libraries
-
Weiner, H., T. Faupel, and K. Bussow. 2004. Protein arrays from cDNA expression libraries. Methods Mol. Biol. 264:1-13.
-
(2004)
Methods Mol. Biol.
, vol.264
, pp. 1-13
-
-
Weiner, H.1
Faupel, T.2
Bussow, K.3
-
235
-
-
0035369115
-
Histidine kinases and response regulator proteins in two-component signaling systems
-
West, A. H., and A. M. Stock. 2001. Histidine kinases and response regulator proteins in two-component signaling systems. Trends Biochem. Sci. 26:369-376.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 369-376
-
-
West, A.H.1
Stock, A.M.2
-
237
-
-
0037200201
-
A new nonlinear normalization method for reducing variability in DNA microarray experiments
-
research0048
-
Workman, C., L. J. Jensen, H. Jarmer, R. Berka, L. Gautier, H. B. Nielser, H. H. Saxild, C. Nielsen, S. Brunak, and S. Knudsen. 2002. A new nonlinear normalization method for reducing variability in DNA microarray experiments. Genome Biol. 3:research0048.
-
(2002)
Genome Biol.
, vol.3
-
-
Workman, C.1
Jensen, L.J.2
Jarmer, H.3
Berka, R.4
Gautier, L.5
Nielser, H.B.6
Saxild, H.H.7
Nielsen, C.8
Brunak, S.9
Knudsen, S.10
-
238
-
-
0034807713
-
Analysing gene expression data from DNA microarrays to identify candidate genes
-
Wu, T. D. 2001. Analysing gene expression data from DNA microarrays to identify candidate genes. J. Pathol. 195:53-65.
-
(2001)
J. Pathol.
, vol.195
, pp. 53-65
-
-
Wu, T.D.1
-
239
-
-
0034847379
-
Two closely related human nuclear export factors utilize entirely distinct export pathways
-
Yang, J., H. P. Bogerd, P. J. Wang, D. C. Page, and B. R. Cullen. 2001. Two closely related human nuclear export factors utilize entirely distinct export pathways. Mol. Cell. 8:397-406.
-
(2001)
Mol. Cell.
, vol.8
, pp. 397-406
-
-
Yang, J.1
Bogerd, H.P.2
Wang, P.J.3
Page, D.C.4
Cullen, B.R.5
-
240
-
-
0018472524
-
Integrative physiology as physical biology
-
Yates, F. E. 1979. Integrative physiology as physical biology. Am. J. Physiol. 236:R239-R240.
-
(1979)
Am. J. Physiol.
, vol.236
-
-
Yates, F.E.1
-
241
-
-
0037440737
-
Protein-protein interaction map for yeast TFIID
-
Yatherajam, G., L. Zhang, S. M. Kraemer, and L. A. Stargell. 2003. Protein-protein interaction map for yeast TFIID. Nucleic Acids Res. 31:1252-1260.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1252-1260
-
-
Yatherajam, G.1
Zhang, L.2
Kraemer, S.M.3
Stargell, L.A.4
-
242
-
-
0347136011
-
Identification of antimicrobial targets using a comprehensive genomic approach
-
Yin, D., B. Fox, M. L. Lonetto, M. R. Etherton, D. J. Payne, D. J. Holmes, M. Rosenberg, and Y. Ji. 2004. Identification of antimicrobial targets using a comprehensive genomic approach. Pharmacogenomics 5:101-113.
-
(2004)
Pharmacogenomics
, vol.5
, pp. 101-113
-
-
Yin, D.1
Fox, B.2
Lonetto, M.L.3
Etherton, M.R.4
Payne, D.J.5
Holmes, D.J.6
Rosenberg, M.7
Ji, Y.8
-
243
-
-
13244252322
-
Two-stage normalization using background intensities in cDNA microarray data
-
Yoon, D., S. G. Yi, J. H. Kim, and T. Park. 2004. Two-stage normalization using background intensities in cDNA microarray data. BMC Bioinformatics 5:97.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 97
-
-
Yoon, D.1
Yi, S.G.2
Kim, J.H.3
Park, T.4
-
244
-
-
0037473189
-
Combined transcriptome and proteome analysis of Escherichia coli during high cell density culture
-
Yoon, S. H., M. J. Han, S. Y. Lee, K. J. Jeong, and J. S. Yoo. 2003. Combined transcriptome and proteome analysis of Escherichia coli during high cell density culture. Biotechnol. Bioeng. 81:753-767.
-
(2003)
Biotechnol. Bioeng.
, vol.81
, pp. 753-767
-
-
Yoon, S.H.1
Han, M.J.2
Lee, S.Y.3
Jeong, K.J.4
Yoo, J.S.5
-
245
-
-
0023134858
-
Interaction of azole antifungal agents with cytochrome P-45014DM purified from Saccharomyces cerevisiae microsomes
-
Yoshida, Y., and Y. Aoyama. 1987. Interaction of azole antifungal agents with cytochrome P-45014DM purified from Saccharomyces cerevisiae microsomes. Biochem. Pharmacol. 36:229-235.
-
(1987)
Biochem. Pharmacol.
, vol.36
, pp. 229-235
-
-
Yoshida, Y.1
Aoyama, Y.2
-
246
-
-
0035992124
-
Response of gene expression in Saccharomyces cerevisiae to amphotericin B and nystatin measured by microarrays
-
Zhang, L., Y. Zhang, Y. Zhou, S. An, Y. Zhou, and J. Cheng. 2002. Response of gene expression in Saccharomyces cerevisiae to amphotericin B and nystatin measured by microarrays. J. Antimicrob. Chemother. 49:905-915.
-
(2002)
J. Antimicrob. Chemother.
, vol.49
, pp. 905-915
-
-
Zhang, L.1
Zhang, Y.2
Zhou, Y.3
An, S.4
Zhou, Y.5
Cheng, J.6
-
247
-
-
0029019484
-
Control of the Escherichia coli rrnB P1 promoter strength by ppGpp
-
Zhang, X., and H. Bremer. 1995. Control of the Escherichia coli rrnB P1 promoter strength by ppGpp. J. Biol. Chem. 270:11181-11189.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 11181-11189
-
-
Zhang, X.1
Bremer, H.2
-
248
-
-
0036818941
-
Kinetic properties of rrn promoters in Escherichia coli
-
Zhang, X., P. Dennis, M. Ehrenberg, and H. Bremer. 2002. Kinetic properties of rrn promoters in Escherichia coli. Biochimie 84:981-996.
-
(2002)
Biochimie
, vol.84
, pp. 981-996
-
-
Zhang, X.1
Dennis, P.2
Ehrenberg, M.3
Bremer, H.4
-
249
-
-
0033768106
-
Analysis of yeast protein kinases using protein chips
-
Zhu, H., J. F. Klemic, S. Chang, P. Bertone, A. Casamayor, K. G. Klemic, D. Smith, M. Gerstein, M. A. Reed, and M. Snyder. 2000. Analysis of yeast protein kinases using protein chips. Nat. Genet. 26:283-289.
-
(2000)
Nat. Genet.
, vol.26
, pp. 283-289
-
-
Zhu, H.1
Klemic, J.F.2
Chang, S.3
Bertone, P.4
Casamayor, A.5
Klemic, K.G.6
Smith, D.7
Gerstein, M.8
Reed, M.A.9
Snyder, M.10
|