Protein arrays for gene expression and molecular interaction screening

Current Opinion in Microbiology

Volumn 3, Issue 3, 2000, Pages 298-302

  Walter, Gerald ^a   Büssow, Konrad ^b   Cahill, Dolores ^b   Lueking, Angelika ^b   Lehrach, Hans ^b  

^a Biorchard AS   (Norway)

^b MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BIOTECHNOLOGY; DNA DETERMINATION; GENE EXPRESSION; MEDICAL RESEARCH; MICROBIAL GENETICS; MOLECULAR INTERACTION; NONHUMAN; REVIEW; SCREENING TEST;

EID: 0343674504     PISSN: 13695274     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1369-5274(00)00093-X     Document Type: Review

References (32)

1. Ge H. UPA, a universal protein array system for quantitative detection of protein-protein, protein-DNA, protein-RNA and protein-ligand interactions. Nucleic Acids Res. 28:e3:2000;I-VII. The paper describes an easy system for studying molecular interactions on membranes, indicating different affinities using low- or high-salt washes.
2. Mendoza L.G., McQuary P., Mongan A., Gangadharan R., Brignac S., Eggers M. High-throughput microarray-based enzyme-linked immunosorbent assay (ELISA). Biotechniques. 27:1999;778-788. Protein microarrays were robotically printed within the microtitre well format, as useful for multi-analyte parallel incubations.
3. Rowe C.A., Scruggs S.B., Feldstein M.J., Golden J.P., Ligler F.S. An array immunosensor for simultaneous detection of clinical analytes. Anal Chem. 71:1999;433-439.
4. Cohen C.B., Chin D.E., Jeong S., Nikiforov T.T. A microchip-based enzyme assay for protein kinase A. Anal Biochem. 273:1999;89-97.
5. Guschin D., Yershov G., Zaslavsky A., Gemmell A., Shick V., Proudnikov D., Arenkov P., Mirzabekov A. Manual manufacturing of oligonucleotide, DNA, and protein microchips. Anal Biochem. 250:1997;203-211.
6. Parinov S., Barsky V., Yershov G., Kirillov E., Timofeev E., Belgovskiy A., Mirzabekov A. DNA sequencing by hybridization to microchip octa-and decanucleotides extended by stacked pentanucleotides. Nucleic Acids Res. 24:1996;2998-3004.
7. Martin B.D., Gaber B.P., Patterson C.H., Turner D.C. Direct protein microarray fabrication using a hydrogel 'stamper'. Langmuir. 14:1998;3971-3975. A new, gel-based technology of array printing, offering great potential regarding economy and avoiding contamination problems.
8. Mooney J.F., Hunt A.J., McIntosh J.R., Liberko C.A., Walba D.M., Rogers C.T. Patterning of functional antibodies and other proteins by photolithography of silane monolayers. Proc Natl Acad Sci USA. 93:1996;12287-12291.
9. Jones V.W., Kenseth J.R., Porter M.D., Mosher C.L., Henderson E. Microminiaturized immunoassays using atomic force microscopy and compositionally patterned antigen arrays. Anal Chem. 70:1998;1233-1241.
10. Michael K.L., Taylor L.C., Schultz S.L., Walt D.R. Randomly ordered addressable high-density optical sensor arrays. Anal Chem. 70:1998;1242-1248.
11. Ekins R.P. Ligand assays: from electrophoresis to miniaturized microarrays. Clin Chem. 44:1998;2015-2030.
12. Kononen J., Bubendorf L., Kallioniemi A., Barlund M., Schraml P., Leighton S., Torhorst J., Mihatsch M.J., Sauter G., Kallioniemi O.P. Tissue microarrays for high-throughput molecular profiling of tumour specimens. Nat Med. 4:1998;844-847. This technology of tumour typing on serial sections, automatically cut and arrayed from tissue core biopsies is already widely used in cancer research.
13. Theillet C. Full speed ahead for tumour screening. Nat Med. 4:1998;767-768.
14. Behr S., Matzig M., Levin A., Eickhoff H., Heller C. A fully automated multicapillary electrophoresis device for DNA analysis. Electrophoresis. 20:1999;1492-1507.
15. Lennon G.G., Lehrach H. Hybridization analyses of arrayed cDNA libraries. Trends Genet. 7:1991;314-317.
16. Clark M.D., Panopoulou G.D., Cahill D.J., Büssow K., Lehrach H. Construction and analysis of arrayed cDNA libraries. Methods Enzymol. 303:1999;205-233.
17. Eickhoff H, Ivanov I, Lehrach H: Miniaturized equipment and potential of microsystem technology. In Technical System Management in Microsystem Technology: A Powerful Tool for Biomolecular Studies. Edited by Saluz HP. Basel: Birkhäuser Verlag; in press.
18. Büssow K., Cahill D., Nietfeld W., Bancroft D., Scherzinger E., Lehrach H., Walter G. A method for global protein expression and antibody screening on high-density filters of an arrayed cDNA library. Nucleic Acids Res. 26:1998;5007-5008. The paper describes the first use of high-density filters for parallel DNA hybridisation, protein expression and antibody screening.
19. Meier-Ewert S., Maier E., Ahmadi A., Curtis J., Lehrach H. An automated approach to generating expressed sequence catalogues. Nature. 361:1993;375-376.
20. Zehetner G., Lehrach H. The reference library system - sharing biological material and experimental data. Nature. 367:1994;489-491.
21. Maier E., Bancroft D.R., Lehrach H. Automation Technologies for Genome Characterization. Beugelsdijk T.J. 1997;65-88 John Wiley & Sons, Inc, New York.
22. Bowtell D.D. Options available - from start to finish - for obtaining expression data by microarray. Nat Genet. 21(suppl 1):1999;25-32. This paper is part of a dedicated supplement on the matter and gives a broad overview over the latest microarray technology.
23. Meier E.S., Lange J., Gerst H., Herwig R., Schmitt A., Freund J., Elge T., Mott R., Herrmann B., Lehrach H. Comparative gene expression profiling by oligonucleotide fingerprinting. Nucleic Acids Res. 26:1998;2216-2223.
24. Schena M., Heller R.A., Theriault T.P., Konrad K., Lachenmeier E., Davis R.W. Microarrays: biotechnology's discovery platform for functional genomics. Trends Biotechnol. 16:1998;301-306. The paper lists a wide range of applications of the new microarray technology for gene expression analysis.
25. Lueking A., Horn M., Eickhoff H., Büssow K., Lehrach H., Walter G. Protein microarrays for gene expression and antibody screening. Anal Biochem. 270:1999;103-111. Here is the first paper on robotically printing microarrays from lysates of a cDNA expression library and their use for high-throughput molecular interaction screening.
26. Büssow K., Nordhoff E., Lübbert C., Lehrach H., Walter G. A human cDNA library for high-throughput protein expression screening. Genomics. 65:2000;1-8.
27. Cahill D., Nordhoff E., Klose J., O'Brien J., Eickhoff H., Lehrach H. Bridging genomics and proteomics. Pennington S., Dunn M. Proteomics. 2000;BIOS Scientific Publishers Ltd, Oxford.
28. Arenkov P., Kukhtin A., Gemmell A., Voloshchuk S., Chupeeva V., Mirzabekov A. Protein microchips: use for immunoassay and enzymatic reactions. Anal Biochem. 278:2000;123-131.
29. Englert C.R., Baibakov G.V., Emmert B.M. Layered expression scanning: rapid molecular profiling of tumor samples. Cancer Res. 60:2000;1526-1530.
30. Emili A.Q., Cagney G. Large-scale functional analysis using peptide or protein arrays. Nat Biotechnol. 18:2000;393-397.
31. Martzen M.R., McCraith S.M., Spinelli S.L., Torres F.M., Fields S., Grayhack E.J., Phizicky E.M. A biochemical genomics approach for identifying genes by the activity of their products. Science. 286:1999;1153-1155.
32. Uetz P., Giot L., Cagney G., Mansfield T.A., Judson R.S., Knight J.R., Lockshon D., Narayan V., Srinivasan M., Pochart P.et al. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature. 403:2000;623-627.