Analysis of gene expression data using self-organizing maps

FEBS Letters

Volumn 451, Issue 2, 1999, Pages 142-146

  Törönen, Petri ^a   Kolehmainen, Mikko ^a   Wong, Garry ^a   Castrén, Eero ^a  

^a UNIVERSITY OF EASTERN FINLAND   (Finland)

Author keywords

Cluster analysis; Gene expression data; Sammon's mapping; Self organizing map; Yeast

Indexed keywords

ALGORITHM; ARTICLE; ARTIFICIAL NEURAL NETWORK; CLUSTER ANALYSIS; DATA ANALYSIS; GENE EXPRESSION; GENE MAPPING; NONHUMAN; PRIORITY JOURNAL; YEAST;

ALGORITHMS; CHROMOSOME MAPPING; CLUSTER ANALYSIS; DATABASES, FACTUAL; GENE EXPRESSION; MOLECULAR BIOLOGY; NEURAL NETWORKS (COMPUTER); SOFTWARE;

EID: 0042863923     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0014-5793(99)00524-4     Document Type: Article

References (13)

1. Brown P.O., Botstein D. Nature Genet. 21:1999;33-37.
2. DeRisi J.L., Iyer V.R., Brown P.O. Science. 278:1997;680-686.
3. Chu S., DeRisi J., Eisen M., Mulholland J., Botstein D., Brown P.O., Herskowitz I. Science. 282:1998;699-705.
4. Spellman P.T., Sherlock G., Zhang M.Q., Iyer V.R., Anders K., Eisen M.B., Brown P.O., Botstein D., Futcher B. Mol. Biol. Cell. 9:1998;3273-9327.
5. Iyer V.R., Eisen M.B., Ross D.T., Schuler G., Moore T., Lee J.C.F., Trent J.M., Staudt L.M., Hudson J. Jr., Boguski M.S., Lashkari D., Shalon D., Botstein D., Brown P.O. Science. 283:1999;83-87.
6. Eisen M.B., Spellman P.T., Brown P.O., Botstein D. Proc. Natl. Acad. Sci. USA. 95:1998;14863-14868.
7. Kohonen, T. (1995) Self-Organizing Maps, Springer, Berlin.
8. Simula, O. and Kangas, J. (1995) in: Neural Networks for Chemical Engineers (Bulsari, A.B., Ed.), pp. 371-384, Elsevier Science, Amsterdam.
9. Ultsch, A. and Siemon, H.P. (1990) in: Proc. INNC'90, Int. Neural Network Conf., Dordrecht, Netherlands, pp. 305-308.
10. Kohonen T., Hari R. Trends Neurosci. 22:1999;135-139.
11. Sammon J.W. Jr. IEEE Trans. Computers. C-18:1969;401-409.
12. Koikkalainen, P. (1994) in: Proceedings of the 11th European Conference on Artificial Intelligence (Cohn, A., Ed.), pp. 211-215, Wiley and Sons, New York.
13. Tamayo P., Slonim D., Mesirov J., Zhu Q., Kitareewan S., Dmitrovsky E., Lander E.S., Golub T.R. Proc. Natl. Acad. Sci. USA. 96:1999;2907-2912.