Knowledge-based analysis of microarray gene expression data by using support vector machines

Proceedings of the National Academy of Sciences of the United States of America

Volumn 97, Issue 1, 2000, Pages 262-267

  Brown, Michael P S ^a   Grundy, William Noble ^c   Lin, David ^a   Cristianini, Nello ^d   Sugnet, Charles Walsh ^b   Furey, Terrence S ^a   Ares Jr , Manuel ^b   Haussler, David ^a  

^a University of California Santa Cruz   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c Department of Earth and Environmental Sciences   (United States)

^d UNIVERSITY OF BRISTOL   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; BIOTECHNOLOGY; DNA HYBRIDIZATION; GENE EXPRESSION; GENE FUNCTION; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; YEAST;

ALGORITHMS; COMPUTERS; DATABASES, FACTUAL; DNA; FUNGAL PROTEINS; GENE EXPRESSION; GENES, FUNGAL; NUCLEIC ACID HYBRIDIZATION; OPEN READING FRAMES; SACCHAROMYCES CEREVISIAE;

SACCHAROMYCES CEREVISIAE;

EID: 0034602774     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.97.1.262     Document Type: Article

References (33)

1. Eisen, M., Spellman, P., Brown, P. & Botstein, D. (1998) Proc. Natl. Acad. Sci. USA 95, 14863-14868.
2. Spellman, P. T, Sherlock, G., Zhang, M. Q, Iyer, V. R, Anders, K., Eisen, M. B, Brown, P. O, Botstein, D. & Futcher, B. (1998) Mol. Biol. Cell 9, 3273-3297.
3. Tamayo, P., Slonim, D., Mesirov, J., Zhu, Q., Kitareewan, S., Dmitrovsky, E., Lander, E. & Golub, T. (1999) Proc. Natl. Acad. Sci. USA 96, 2907-2912.
4. Vapnik, V. (1998) Statistical Learning Theory (Wiley, New York).
5. Burges, C. J. C. (1998) Data Mining and Knowledge Discovery 2, 121-167.
6. Scholkopf, C., Burges, J. C. & Smola, A. J. (1999) Advances in Kernel Methods (MIT Press, Cambridge, MA).
7. Duda, R. O. & Hart, P. E. (1973) Pattern Classification and Scene Analysis (Wiley, New York).
8. Bishop, C. (1995) Neural Networks for Pattern Recognition (Oxford Univ. Press, New York).
9. Quinlan, J. (1997) in Programs for Machine Learning, Series in Machine Learning (Morgan Kaufmann, San Francisco).
10. Wu, D., Bennett, K., Cristianini, N. & Shawe-Taylor, J. (1999) in ICML99 (Morgan Kaufmann, San Francisco).
11. Lashkari, D. A, L., DeRisi, J., McCusker, J. H, Namath, A. F, Gentile, C., Hwang, S. Y, Brown, P. O. & Davis, R. W. (1997) Proc. Natl. Acad. Sci. USA 94, 13057-13062.
12. DeRisi, J., Iyer, V. & Brown, P. (1997) Science 278, 680-686
13. Spellman, P., Sherlock, G., Zhang, M., Iyer, V., Anders, K., Eisen, M., Brown, P., Botstein, D. & Futcher, B. (1998) Mol. Biol. Cell 9, 3273-3297.
14. Chu, S., DeRisi, J., Eisen, M., Mulholland, J., Botstein, D., Brown, P. & Herskowitz, I. (1998) Science 282, 699-705.
15. Schölkopf, B., Sung, K., Burges, C., Girosi, F., Niyogi, P., Poggio, T. & Vapnik, V. (1997) IEEE Trans. Sig. Proc. 45, 2758-2765.
16. Jaakkola, T., Diekhans, M. & Haussler, D. (1999) in ISMB99 (AAAI Press, Menlo Park, CA), pp. 149-158.
17. Kinzy, T. G & J. L. Woolford, J. (1995) Genetics 141, 481-489.
18. George, R., Beddoe, T., Landl, K. & Lithgow, T. (1998) Proc. Natl. Acad. Sci. USA 95, 2296-2301.
19. Marres, C. A. M, de Vries, S. & Grivell, L. A. (1991) Eur. J. Biochem. 195, 857-862.
20. Kitajima-Ihara, T. & Yagi, T. (1998) FEBS Lett. 421, 37-40.
21. Johnson, E. S, Ma, P. C, Ota, I. M. & Varshavsky, A. (1995) J. Biol. Chem. 270, 17442-17456.
22. Stoler, S, Keith, K. C, Curnick, K. E. & Fitzgerald-Hayes, M. (1995) Genes Dev. 9, 573-586.
23. Fujimuro, M., Tanaka, K., Yokosawa, H. & Toh-e, A. (1998) FEBS Lett. 423, 149-154.
24. Glickman, M. H, Rubin, D. M., Fried, V. A. & Finley, D. (1998) Mol. Cell. Biol. 18, 3149-3162.
25. Papa, F. R, Alexander, Y. A. & Hochstrasser, M. (1999) Mol. Biol. Cell 10, 741-756.
26. Garrett & Grisham. (1995) Biochemistry (Saunders, Philadelphia), pp. 619-622.
27. Wool, I. G, Chan, Y.-L. & Gluck, A. (1995) Biochem. Cell Biol. 73, 933-947.
28. Dick, F. A, Karamanou, S. & Trumpower, B. L. (1997) J. Biol. Chem. 272, 13372-13379.
29. Arnold, I., Pfeiffer, K., Neupert, W., Stuart, R. A. & Schagger, H. (1999) J. Biol. Chem. 274, 36-40.
30. Gross, G., Gaestel, M., Bohm, H. & Bielka, H. (1989) Nucleic Acids Res. 17, 8367.
31. Herschlag, D., Khosla, M., Tsuchihashi, Z. & Karpel, R. L. (1994) EMBO J. 13, 2913-2924.
32. Haft, C. R, de la Luz Sierra, M., Barr, V. A, Haft, D. H. & Taylor, S. I. (1998) Mol. Cell. Biol. 18, 7278-7287.
33. Jaakkola, T & Haussler, D. (1998) in NIPS 11 (Morgan Kaufmann, San Francisco), pp. 487-493.