Analysis of hydrostatic pressure effects on transcription in Escherichia coli by DNA microarray procedure

Extremophiles

Volumn 9, Issue 1, 2005, Pages 65-73

  Ishii, Akihiro ^a,b,e   Oshima, Taku ^c   Sato, Takako ^b   Nakasone, Kaoru ^d   Mori, Hirotada ^c   Kato, Chiaki ^a,b  

^a TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

^b JAPAN AGENCY FOR MARINE EARTH SCIENCE AND TECHNOLOGY   (Japan)

^c NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

^d KINKI UNIVERSITY   (Japan)

^e TOYO UNIVERSITY   (Japan)

Author keywords

DNA microarray; Escherichia coli; H NS; Pressure regulation; Stress response

Indexed keywords

BACTERIAL PROTEIN; DNA;

ARTICLE; CHEMISTRY; DNA MICROARRAY; DOWN REGULATION; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; HYDROSTATIC PRESSURE; METABOLISM; MUTATION; PRESSURE; STEM CELL; TEMPERATURE; TIME; UPREGULATION;

BACTERIAL PROTEINS; DNA; DOWN-REGULATION; ESCHERICHIA COLI; GENE EXPRESSION REGULATION, BACTERIAL; HYDROSTATIC PRESSURE; MUTATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PRESSURE; STEM CELLS; TEMPERATURE; TIME FACTORS; TRANSCRIPTION, GENETIC; UP-REGULATION;

ESCHERICHIA COLI;

EID: 14644414887     PISSN: 14310651     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00792-004-0414-3     Document Type: Article

References (37)

1. Baierlein R, Infante AA (1974) Pressure-induced dissociation of ribosomes. Methods Enzymol 30:328-345
2. Cossins AR, Macdonald AG (1984) Homeoviscous theory under pressure: the molecular order of membranes from deep-sea fish. Biochim Biophys Acta 776:144-150
3. Dammel CS, Noller, HF (1995) Suppression of a cold-sensitive mutation in 16S rRNA by overexpression of a novel ribosome-binding factor, RbfA. Genes Dev 9:626-637
4. Delong EF, Yayanos AA (1985) Adaptation of the membrane lipids of a deep-sea bacterium to changes in hydrostatic pressure. Science 228:1101-1102
5. Delong EF, Yayanos AA (1986) Biochemical function and ecological significance of novel bacterial lipids in deep-sea prokaryotes. Appl Env Microbiol 51:730-737
6. Dersch P, Kneip S, Breme E (1994) The nucleoid-associated DNA-binding protein H-NS is required for the efficient adaptation of Escherichia coli K-12 to a cold environment. Mol Genet Genomics 245:255-259
7. Gross M, Lehle K, Jaenicke R, Nierhaus KH (1993) Pressure-induced dissociation of ribosomes and elongation cycle intermediates. Stabilizing conditions and identification of the most sensitive functional state. Eur J Biochem 218:463-468
8. Hommais F, Krin E, Laurent-Winter C, Soutourina O, Malpertuy A, Le Caer JP, Danchin A, Bertin P (2001) Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS. Mol Microbiol 40:20-36
9. Hurme R, Rhen M (1998) Temperature sensing in bacterial gene regulation - what it all boils down to. Mol Microbiol 30:1-6
10. Infante AA, Baierlein R (1971) Pressure-induced dissociation of sedimenting ribosomes: effect on sedimentation patterns. Proc Natl Acad Sci USA 68:1780-1785
11. Jones PG, Inoue M (1994) The cold-shock response - a hot topic. Mol Microbiol 11:811-818
12. Kato C, Sato T, Smorawinska M, Horikoshi K (1994) High pressure conditions stimulate expression of chloramphenicol acetyltransferase regulated by the lac promoter in Escherichia coli. FEMS Microbiol Lett 122:91-96
13. Kato C, Sato T, Horikoshi K (1995) Isolation and properties of barophilic and barotolerant bacteria from deep-sea mud samples. Biodiv Conserv 4:1-9
14. Kato C, Nakasone K, Quereshi MH, Horikoshi K (2000) How do deep-sea microorganisms respond to changes in environmental pressure? In: Storey KB, Storey J (ed) Environmental stresses and gene responses. Elsevier, Amsterdam, pp 277-291
15. Lemaux PG, Herendeen S, Bloch PL, Neidhardt FC (1978) Transient rates of synthesis of individual polypeptides in E. coli following temperature shifts. Cell 13:427-434
16. Lopez-Garcia P, Forterre P (2000) DNA topology and the temperature stress response, a tale from mesophiles and hyperthermophiles. Bioessays 22:738-746
17. Macdonald AG (1984) The effects of pressure on the molecular structure and physiological functions of cell membranes. Philos Trans R Soc London 304B:47-68
18. Marr AG, Ingraham JL (1962) Effect of temperature on the composition of fatty acids in Escherichia coli. J Bacteriol 84:1260-1267
19. Meng SY, Bennett GN (1992) Regulation of the Escherichia coli cad operon: location of a site required for pH induction. J Bacteriol 174:2670-2678
20. Morris RJ (1971) Seasonal and environmental effects on the lipid composition of Neomysis integer. J Mar Biol Assoc UK 51:21-31
21. Oshima T, Wada C, Kawagoe Y, Ara T, Maeda M, Masuda Y, Hiraga S, Mori H (2002) Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli. Mol Microbiol 45:673-695
22. Purss GT, Drilica K (1989) DNA supercoiling and prokaryotic transcription. Cell 56:521-523
23. Riley M, Labedan B (1996) Escherichia coli gene products: physiological functions and common ancestries. In: Neidhardt FC, Curtiss R, Gross C, Ingraham JL, Lin ECC, Low KB et al (eds) Escherichia coli and Salmonella: cellular and molecular biology. American Society for Microbiology Press, Washington, pp 2118-2202
24. Sato T, Nakamura Y, Nakashima KK, Kato C, Horikoshi K (1996) High pressure represses expression of the malB operon in Escherichia coli. FEMS Microbiol Lett 135:111-116
25. Sinensky M (1974) Homeoviscous adatpation - a homeostatic process that regulates the viscosity of membrane lipids in Escherichia coli. Proc Natl Acad Sci USA 71:522-525
26. Tamura K, Shimizu T, Kourai H (1992) Effects of ethanol on the growth and elongation of Escherichia coli under high pressures up to 40 MPa. FEMS Microbiol Lett 99:321-324
27. Thieringer H A, Jones PG, Inouye M (1998) Cold shock and adaptation. BioEssays 20:49-57
28. VanBogelen RA, Neidhardt FC (1990) Ribosomes as sensors of heat and cold shock in Escherichia coli. Proc Natl Acad Sci USA 87:5589-5593
29. Vigh L, Maresca B, Harwood JL (1998) Does the membrane's physical state control the expression of heat shock and other genes? Trends Biochem Sci 23:369-374
30. Welch TJ, Farewell A, Neidhardt FC, Bartlett DH (1993) Stress response of Escherichia coli to elevated hydrostatic pressure. J Bacteriol 175:7170-7177
31. Yamamori T, Yura T (1980) Temperature-induced synthesis of specific proteins in Escherichia coli: evidence for transcriptional control. J Bacteriol 142:843-851
32. Yamamori T, Ito K, Nakamura Y, Yura T (1978) Transient regulation of protein synthesis in Escherichia coli upon shift-up of growth temperature. J Bacteriol 134:1133-1140
33. Yamanaka K (1999) Cold shock response in Escherichia coli. J Mol Biotechnol 1:193-202
34. Yayanos AA, Van Boxtel R (1969) A study of the effects of hydrostatic pressure on macromolecular synthesis in Escherichia coli. Biophys J 9:1464-1482
35. Yoshida T, Ueguchi C, Yamada H, Mizuno T (1993) Function of the Escherichia coli nucleoid protein, H-NS: molecular analysis of a subset of proteins whose expression is enhanced in an hns deletion mutant. Mol Genet Genomics 237:113-122
36. Zobell CE, Cobet AB (1962) Effects of hydrostatic pressure on E. coli. J Bacteriol 84:1228-1236
37. Zobell CE, Cobet AB (1964) Filament formation by Escherichia coli at increased hydrostatic pressures. J Bacteriol 87:710-719