메뉴 건너뛰기




Volumn 7, Issue 1, 2003, Pages 55-63

Protein chip technology

Author keywords

[No Author keywords available]

Indexed keywords

PEPTIDE; PROTEIN; PROTEOME;

EID: 0037307131     PISSN: 13675931     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1367-5931(02)00005-4     Document Type: Review
Times cited : (848)

References (60)
  • 1
    • 0035151047 scopus 로고    scopus 로고
    • Advances in protein microarray technology for protein expression and interaction profiling
    • Haab B.B. Advances in protein microarray technology for protein expression and interaction profiling. Curr. Opin. Drug Disc. Dev. 4:2001;116-123.
    • (2001) Curr. Opin. Drug Disc. Dev. , vol.4 , pp. 116-123
    • Haab, B.B.1
  • 2
    • 0035313732 scopus 로고    scopus 로고
    • Protein and antibody arrays and their medical applications
    • Cahill D.J. Protein and antibody arrays and their medical applications. J. Immunol. Methods. 250:2001;81-91.
    • (2001) J. Immunol. Methods , vol.250 , pp. 81-91
    • Cahill, D.J.1
  • 5
    • 0012761993 scopus 로고    scopus 로고
    • Biochemical assays in a chip format
    • Zhu H, Snyder M: Biochemical assays in a chip format. Curr Drug Disc 2001, Sept:31-34.
    • (2001) Curr Drug Disc , vol.SEPT , pp. 31-34
    • Zhu, H.1    Snyder, M.2
  • 6
    • 0037023854 scopus 로고    scopus 로고
    • Functional proteomics current achievements
    • Yanagida M. Functional proteomics current achievements. J. Chromat. B. 771:2002;89-106.
    • (2002) J. Chromat. B , vol.771 , pp. 89-106
    • Yanagida, M.1
  • 7
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena M., Shalon D., Davis R.W., Brown P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science. 270:1995;467-470.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 8
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi J.L., Iyer V.R., Brown P.O. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science. 278:1997;680-686.
    • (1997) Science , vol.278 , pp. 680-686
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 10
    • 0036531903 scopus 로고    scopus 로고
    • 'Omic' approaches for unraveling signaling networks
    • Zhu H., Snyder M. 'Omic' approaches for unraveling signaling networks. Curr. Opin. Cell. Biol. 14:2002;173-179.
    • (2002) Curr. Opin. Cell. Biol. , vol.14 , pp. 173-179
    • Zhu, H.1    Snyder, M.2
  • 13
    • 0034628508 scopus 로고    scopus 로고
    • A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    • The authors report a systematic yeast two-hybrid approach to identify many novel protein-protein interactions in yeast.
    • Uetz P., Giot L., Cagney G., Mansfield T.A., Judson R.S., Knight J.R., Lockshon D., Narayan V., Srinivasan M., Pochart P.et al. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature. 403:2000;623-627 The authors report a systematic yeast two-hybrid approach to identify many novel protein-protein interactions in yeast.
    • (2000) Nature , vol.403 , pp. 623-627
    • Uetz, P.1    Giot, L.2    Cagney, G.3    Mansfield, T.A.4    Judson, R.S.5    Knight, J.R.6    Lockshon, D.7    Narayan, V.8    Srinivasan, M.9    Pochart, P.10
  • 14
    • 0033604566 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast genome by transposon tagging and gene disruption
    • This is a comprehensive report on analysis of the yeast genome for disruption phenotypes and protein localizations.
    • Ross-Macdonald P., Coelho P.S., Roemer T., Agarwal S., Kumar A., Jansen R., Cheung K.H., Sheehan A., Symoniatis D., Umansky L.et al. Large-scale analysis of the yeast genome by transposon tagging and gene disruption. Nature. 402:1999;413-418 This is a comprehensive report on analysis of the yeast genome for disruption phenotypes and protein localizations.
    • (1999) Nature , vol.402 , pp. 413-418
    • Ross-Macdonald, P.1    Coelho, P.S.2    Roemer, T.3    Agarwal, S.4    Kumar, A.5    Jansen, R.6    Cheung, K.H.7    Sheehan, A.8    Symoniatis, D.9    Umansky, L.10
  • 15
    • 0026108692 scopus 로고
    • Light-directed, spatially addressable parallel chemical synthesis
    • Fodor S.P., Read J.L., Pirrung M.C., Stryer L., Lu A.T., Solas D. Light-directed, spatially addressable parallel chemical synthesis. Science. 251:1991;767-773.
    • (1991) Science , vol.251 , pp. 767-773
    • Fodor, S.P.1    Read, J.L.2    Pirrung, M.C.3    Stryer, L.4    Lu, A.T.5    Solas, D.6
  • 17
    • 0034006168 scopus 로고    scopus 로고
    • Large-scale functional analysis using peptide or protein arrays
    • Emili A.Q., Cagney G. Large-scale functional analysis using peptide or protein arrays. Nat. Biotechnol. 18:2000;393-397.
    • (2000) Nat. Biotechnol. , vol.18 , pp. 393-397
    • Emili, A.Q.1    Cagney, G.2
  • 18
    • 0036199649 scopus 로고    scopus 로고
    • Peptide chips for the quantitative evaluation of protein kinase activity
    • The authors constructed high-density peptide chips on gold-coated glass slides, and demonstrated the potential of using such platforms to analyse kinase-substrate specificity and the dynamics of kinase reactions.
    • Houseman B.T., Huh J.H., Kron S.J., Mrksich M. Peptide chips for the quantitative evaluation of protein kinase activity. Nat. Biotechnol. 20:2002;270-274 The authors constructed high-density peptide chips on gold-coated glass slides, and demonstrated the potential of using such platforms to analyse kinase-substrate specificity and the dynamics of kinase reactions.
    • (2002) Nat. Biotechnol. , vol.20 , pp. 270-274
    • Houseman, B.T.1    Huh, J.H.2    Kron, S.J.3    Mrksich, M.4
  • 19
    • 0035221240 scopus 로고    scopus 로고
    • Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions
    • To investigate whether antibody microarrays could quantitatively detect antibody-antigen interactions, the authors chose 105 well-studied antibody-antigen pairs to set up both antigen and antibody microarrays, and found that about 30% showed linear relationships useful for protein chip studies.
    • Haab B.B., Dunham M.J., Brown P.O. Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions. Genome Biol. 2:2001;R4 To investigate whether antibody microarrays could quantitatively detect antibody-antigen interactions, the authors chose 105 well-studied antibody-antigen pairs to set up both antigen and antibody microarrays, and found that about 30% showed linear relationships useful for protein chip studies.
    • (2001) Genome Biol. , vol.2 , pp. 4
    • Haab, B.B.1    Dunham, M.J.2    Brown, P.O.3
  • 22
    • 0034651008 scopus 로고    scopus 로고
    • UPA, a universal protein array system for quantitative detection of protein-protein, protein-DNA, protein-RNA and protein-ligand interactions
    • Ge H. UPA, a universal protein array system for quantitative detection of protein-protein, protein-DNA, protein-RNA and protein-ligand interactions. Nucleic Acids Res. 28:2000;e3.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 3
    • Ge, H.1
  • 23
    • 0034622925 scopus 로고    scopus 로고
    • Printing proteins as microarrays for high-throughput function determination
    • These authors demonstrated that proteins could be spotted on a glass slide at high-density to analyse for protein-protein, protein-small-molecule, and enzyme-substrate interactions by using three test systems.
    • MacBeath G., Schreiber S.L. Printing proteins as microarrays for high-throughput function determination. Science. 289:2000;1760-1763 These authors demonstrated that proteins could be spotted on a glass slide at high-density to analyse for protein-protein, protein-small-molecule, and enzyme-substrate interactions by using three test systems.
    • (2000) Science , vol.289 , pp. 1760-1763
    • MacBeath, G.1    Schreiber, S.L.2
  • 24
    • 0033768106 scopus 로고    scopus 로고
    • Analysis of yeast protein kinases using protein chips
    • These authors developed novel nanowell protein chips and used them to analyse almost all yeast protein kinases for their substrate specificities. Many new activities were revealed including the unexpected tyrosine kinase activities of 27 kinases.
    • Zhu H., Klemic J.F., Chang S., Bertone P., Casamayor A., Klemic K.G., Smith D., Gerstein M., Reed M.A., Snyder M. Analysis of yeast protein kinases using protein chips. Nat. Genet. 26:2000;283-289 These authors developed novel nanowell protein chips and used them to analyse almost all yeast protein kinases for their substrate specificities. Many new activities were revealed including the unexpected tyrosine kinase activities of 27 kinases.
    • (2000) Nat. Genet. , vol.26 , pp. 283-289
    • Zhu, H.1    Klemic, J.F.2    Chang, S.3    Bertone, P.4    Casamayor, A.5    Klemic, K.G.6    Smith, D.7    Gerstein, M.8    Reed, M.A.9    Snyder, M.10
  • 25
    • 0035860499 scopus 로고    scopus 로고
    • Global analysis of protein activities using proteome chips
    • To analyse the yeast proteome, these authors cloned 94% of the yeast ORFs in an expression vector, purified 80% of the encoded proteins as full-length fusions, and spotted them on microscopic slides to form the first proteome microarray. These microarrays were used to identify protein-protein and protein-phospholipid interactions.
    • Zhu H., Bilgin M., Bangham R., Hall D., Casamayor A., Bertone P., Lan N., Jansen R., Bidlingmaier S., Houfek T.et al. Global analysis of protein activities using proteome chips. Science. 293:2001;2101-2105 To analyse the yeast proteome, these authors cloned 94% of the yeast ORFs in an expression vector, purified 80% of the encoded proteins as full-length fusions, and spotted them on microscopic slides to form the first proteome microarray. These microarrays were used to identify protein-protein and protein-phospholipid interactions.
    • (2001) Science , vol.293 , pp. 2101-2105
    • Zhu, H.1    Bilgin, M.2    Bangham, R.3    Hall, D.4    Casamayor, A.5    Bertone, P.6    Lan, N.7    Jansen, R.8    Bidlingmaier, S.9    Houfek, T.10
  • 26
    • 0036193564 scopus 로고    scopus 로고
    • Carbohydrate microarrays for the recognition of cross-reactive molecular markers of microbes and host cells
    • By collecting a large number of carbohydrates, this carbohydrate microarray was created and used to identify cross-reactive molecular markers.
    • Wang D., Liu S., Trummer B.J., Deng C., Wang A. Carbohydrate microarrays for the recognition of cross-reactive molecular markers of microbes and host cells. Nat. Biotechnol. 20:2002;275-281 By collecting a large number of carbohydrates, this carbohydrate microarray was created and used to identify cross-reactive molecular markers.
    • (2002) Nat. Biotechnol. , vol.20 , pp. 275-281
    • Wang, D.1    Liu, S.2    Trummer, B.J.3    Deng, C.4    Wang, A.5
  • 27
    • 0036232915 scopus 로고    scopus 로고
    • Carbohydrate arrays for the evaluation of protein binding and enzymatic modification
    • Construction of a carbohydrate microarray.
    • Houseman B.T., Mrksich M. Carbohydrate arrays for the evaluation of protein binding and enzymatic modification. Chem. Biol. 9:2002;443-454 Construction of a carbohydrate microarray.
    • (2002) Chem. Biol. , vol.9 , pp. 443-454
    • Houseman, B.T.1    Mrksich, M.2
  • 28
    • 0033199751 scopus 로고    scopus 로고
    • Printing small molecules as microarrays and detecting protein-ligand interactions en masse
    • To study protein-ligand interactions, a small-molecule microarray was constructed by spotting chemicals from a combinatorial chemistry library on a derivatized glass surface.
    • MacBeath G., Koehler A.N., Schreiber S.L. Printing small molecules as microarrays and detecting protein-ligand interactions en masse. J. Am. Chem. Soc. 121:1999;7967-7968 To study protein-ligand interactions, a small-molecule microarray was constructed by spotting chemicals from a combinatorial chemistry library on a derivatized glass surface.
    • (1999) J. Am. Chem. Soc. , vol.121 , pp. 7967-7968
    • MacBeath, G.1    Koehler, A.N.2    Schreiber, S.L.3
  • 30
    • 0034658890 scopus 로고    scopus 로고
    • Preparation of DNA and protein micro arrays on glass slides coated with an agarose film
    • Afanassiev V., Hanemann V., Wolfl S. Preparation of DNA and protein micro arrays on glass slides coated with an agarose film. Nucleic Acids Res. 28:2000;E66.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 66
    • Afanassiev, V.1    Hanemann, V.2    Wolfl, S.3
  • 31
    • 0035887145 scopus 로고    scopus 로고
    • Profiling of cancer cells using protein microarrays: Discovery of novel radiation-regulated proteins
    • To demonstrate the antibody microarrays could profile protein dynamics from different tissues, the authors spotted 146 distinct antibodies on glass and revealed many radiation-induced regulated proteins.
    • Sreekumar A., Nyati M.K., Varambally S., Barrette T.R., Ghosh D., Lawrence T.S., Chinnaiyan A.M. Profiling of cancer cells using protein microarrays: discovery of novel radiation-regulated proteins. Cancer Res. 61:2001;7585-7593 To demonstrate the antibody microarrays could profile protein dynamics from different tissues, the authors spotted 146 distinct antibodies on glass and revealed many radiation-induced regulated proteins.
    • (2001) Cancer Res. , vol.61 , pp. 7585-7593
    • Sreekumar, A.1    Nyati, M.K.2    Varambally, S.3    Barrette, T.R.4    Ghosh, D.5    Lawrence, T.S.6    Chinnaiyan, A.M.7
  • 33
    • 0034425742 scopus 로고    scopus 로고
    • Antibody arrays for high-throughput screening of antibody-antigen interactions
    • De Wildt R.M., Mundy C.R., Gorick B.D., Tomlinson I.M. Antibody arrays for high-throughput screening of antibody-antigen interactions. Nat. Biotechnol. 18:2000;989-994.
    • (2000) Nat. Biotechnol. , vol.18 , pp. 989-994
    • De Wildt, R.M.1    Mundy, C.R.2    Gorick, B.D.3    Tomlinson, I.M.4
  • 34
    • 0028803702 scopus 로고
    • Covalent attachment of functionalized lipid bilayers to planar waveguides for measuring protein binding to biomimetic membranes
    • Heyse S., Vogel H., Sanger M., Sigrist H. Covalent attachment of functionalized lipid bilayers to planar waveguides for measuring protein binding to biomimetic membranes. Protein Sci. 4:1995;2532-2544.
    • (1995) Protein Sci. , vol.4 , pp. 2532-2544
    • Heyse, S.1    Vogel, H.2    Sanger, M.3    Sigrist, H.4
  • 35
    • 0032693817 scopus 로고    scopus 로고
    • Micropatterned immobilization of a G protein-coupled receptor and direct detection of G protein activation
    • Bieri C., Ernst O.P., Heyse S., Hofmann K.P., Vogel H. Micropatterned immobilization of a G protein-coupled receptor and direct detection of G protein activation. Nat. Biotechnol. 17:1999;8105-8110.
    • (1999) Nat. Biotechnol. , vol.17 , pp. 8105-8110
    • Bieri, C.1    Ernst, O.P.2    Heyse, S.3    Hofmann, K.P.4    Vogel, H.5
  • 36
    • 0035884143 scopus 로고    scopus 로고
    • High-resolution and high-throughput protocols for measuring drug/human serum albumin interactions using BIACORE
    • Rich R.L., Day Y.S., Morton T.A., Myszka D.G. High-resolution and high-throughput protocols for measuring drug/human serum albumin interactions using BIACORE. Anal. Biochem. 296:2001;197-207.
    • (2001) Anal. Biochem. , vol.296 , pp. 197-207
    • Rich, R.L.1    Day, Y.S.2    Morton, T.A.3    Myszka, D.G.4
  • 37
    • 0037117516 scopus 로고    scopus 로고
    • Selective immobilization of proteins to self-assembled monolayers presenting active site-directed capture ligands
    • Hodneland C.D., Lee Y.S., Min D.H., Mrksich M. Selective immobilization of proteins to self-assembled monolayers presenting active site-directed capture ligands. Proc. Natl. Acad. Sci. USA. 99:2002;5048-5052.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 5048-5052
    • Hodneland, C.D.1    Lee, Y.S.2    Min, D.H.3    Mrksich, M.4
  • 38
    • 0036500010 scopus 로고    scopus 로고
    • Immunoassay with multicomponent protein microarrays fabricated by electrospray deposition
    • Avseenko N.V., Morozova T.Y., Ataullakhanov F.I., Morozov V.N. Immunoassay with multicomponent protein microarrays fabricated by electrospray deposition. Anal. Chem. 74:2002;927-933.
    • (2002) Anal. Chem. , vol.74 , pp. 927-933
    • Avseenko, N.V.1    Morozova, T.Y.2    Ataullakhanov, F.I.3    Morozov, V.N.4
  • 39
    • 0031831323 scopus 로고    scopus 로고
    • Mutation detection and single-molecule counting using isothermal rolling-circle amplification
    • Lizardi P.M., Huang X., Zhu Z., Bray-Ward P., Thomas D.C., Ward D.C. Mutation detection and single-molecule counting using isothermal rolling-circle amplification. Nat. Genet. 19:1998;225-232.
    • (1998) Nat. Genet. , vol.19 , pp. 225-232
    • Lizardi, P.M.1    Huang, X.2    Zhu, Z.3    Bray-Ward, P.4    Thomas, D.C.5    Ward, D.C.6
  • 40
    • 0032212208 scopus 로고    scopus 로고
    • A method for global protein expression and antibody screening on high-density filters of an arrayed cDNA library
    • Bussow K., Cahill D., Nietfeld W., Bancroft D., Scherzinger E., Lehrach H., Walter G. A method for global protein expression and antibody screening on high-density filters of an arrayed cDNA library. Nucleic Acids Res. 26:1998;5007-5008.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 5007-5008
    • Bussow, K.1    Cahill, D.2    Nietfeld, W.3    Bancroft, D.4    Scherzinger, E.5    Lehrach, H.6    Walter, G.7
  • 41
    • 0032785107 scopus 로고    scopus 로고
    • Profiling of amyloid beta peptide variants using SELDI Protein Chip arrays
    • Davies H., Lomas L., Austen B. Profiling of amyloid beta peptide variants using SELDI Protein Chip arrays. BioTechniques. 27:1999;1258-1261.
    • (1999) BioTechniques , vol.27 , pp. 1258-1261
    • Davies, H.1    Lomas, L.2    Austen, B.3
  • 42
    • 0032040253 scopus 로고    scopus 로고
    • Microminiaturized immunoassays using atomic force microscopy and compositionally patterned antigen arrays
    • Jones V.W., Kenseth J.R., Porter M.D., Mosher C.L., Henderson E. Microminiaturized immunoassays using atomic force microscopy and compositionally patterned antigen arrays. Anal. Chem. 70:1998;1233-1241.
    • (1998) Anal. Chem. , vol.70 , pp. 1233-1241
    • Jones, V.W.1    Kenseth, J.R.2    Porter, M.D.3    Mosher, C.L.4    Henderson, E.5
  • 43
    • 0035478125 scopus 로고    scopus 로고
    • Surface plasmon resonance: Towards an understanding of the mechanisms of biological molecular recognition
    • McDonnell J.M. Surface plasmon resonance: towards an understanding of the mechanisms of biological molecular recognition. Curr. Opin. Chem. Biol. 5:2001;572-577.
    • (2001) Curr. Opin. Chem. Biol. , vol.5 , pp. 572-577
    • McDonnell, J.M.1
  • 45
    • 0008565479 scopus 로고    scopus 로고
    • Plasmon resonance spectroscopy: Probing molecular interactions within membranes
    • Salamon Z., Brown M.F., Tollin G. Plasmon resonance spectroscopy: probing molecular interactions within membranes. Trends Biochem. Sci. 24:1999;213-219.
    • (1999) Trends Biochem. Sci. , vol.24 , pp. 213-219
    • Salamon, Z.1    Brown, M.F.2    Tollin, G.3
  • 46
    • 0034282271 scopus 로고    scopus 로고
    • Implementing surface plasmon resonance biosensors in drug discovery
    • Myszka D.G., Rich R.L. Implementing surface plasmon resonance biosensors in drug discovery. Pharm. Sci. Technol. Today. 3:2000;310-317.
    • (2000) Pharm. Sci. Technol. Today , vol.3 , pp. 310-317
    • Myszka, D.G.1    Rich, R.L.2
  • 47
    • 0035891309 scopus 로고    scopus 로고
    • Kinetics of antigen binding to arrays of antibodies in different sized spots
    • Sapsford K.E., Liron Z., Shubin Y.S., Ligler F.S. Kinetics of antigen binding to arrays of antibodies in different sized spots. Anal. Chem. 73:2001;5518-5524.
    • (2001) Anal. Chem. , vol.73 , pp. 5518-5524
    • Sapsford, K.E.1    Liron, Z.2    Shubin, Y.S.3    Ligler, F.S.4
  • 53
    • 0035810165 scopus 로고    scopus 로고
    • Functional proteins from a random-sequence library
    • Keefe A.D., Szostak J.W. Functional proteins from a random-sequence library. Nature. 410:2001;715-718.
    • (2001) Nature , vol.410 , pp. 715-718
    • Keefe, A.D.1    Szostak, J.W.2
  • 54
    • 0035430843 scopus 로고    scopus 로고
    • Single step generation of protein arrays from DNA by cell-free expression and in situ immobilisation (PISA method)
    • He M., Taussig M.J. Single step generation of protein arrays from DNA by cell-free expression and in situ immobilisation (PISA method). Nucleic Acids Res. 29:2001;E73.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 73
    • He, M.1    Taussig, M.J.2
  • 56
    • 0034194152 scopus 로고    scopus 로고
    • Phosphoinositide signaling and the regulation of membrane trafficking in yeast
    • Odorizzi G., Babst M., Emr S.D. Phosphoinositide signaling and the regulation of membrane trafficking in yeast. Trends Biochem. Sci. 25:2000;229-235.
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 229-235
    • Odorizzi, G.1    Babst, M.2    Emr, S.D.3
  • 57
    • 0034218627 scopus 로고    scopus 로고
    • Digital light-directed synthesis. A microarray platform that permits rapid reaction optimization on a combinatorial basis
    • LeProust E., Pellois J.P., Yu P., Zhang H., Gao X., Srivannavit O., Gulari E., Zhou X. Digital light-directed synthesis. A microarray platform that permits rapid reaction optimization on a combinatorial basis. J. Comb. Chem. 2:2000;349-354.
    • (2000) J. Comb. Chem. , vol.2 , pp. 349-354
    • LeProust, E.1    Pellois, J.P.2    Yu, P.3    Zhang, H.4    Gao, X.5    Srivannavit, O.6    Gulari, E.7    Zhou, X.8
  • 60
    • 0034622970 scopus 로고    scopus 로고
    • Scanometric DNA array detection with nanoparticle probes
    • Taton T.A., Mirkin C.A., Letsinger R.L. Scanometric DNA array detection with nanoparticle probes. Science. 289:2000;1757-1760.
    • (2000) Science , vol.289 , pp. 1757-1760
    • Taton, T.A.1    Mirkin, C.A.2    Letsinger, R.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.