메뉴 건너뛰기




Volumn 65, Issue , 2017, Pages 23-31

Meta-omics insights in the microbial community profiling and functional characterization of fermented foods

Author keywords

Amplicon analysis; Fermented food microbial community; Metabolomics; Metagenomics; Metaproteomics; Metatranscriptomics

Indexed keywords

ACETIC ACID; ALCOHOLIC BEVERAGES; BEVERAGES; CHARACTERIZATION; CHEMICAL CONTAMINATION; DNA SEQUENCES; FERMENTATION; FOOD MICROBIOLOGY; GENE ENCODING; MICROORGANISMS; VEGETABLES;

EID: 85019215937     PISSN: 09242244     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tifs.2017.05.002     Document Type: Review
Times cited : (108)

References (98)
  • 2
    • 84925463468 scopus 로고    scopus 로고
    • A competitive quantitative polymerase chain reaction method for characterizing the population dynamics during kimchi fermentation
    • Ahn, G.-H., Moon, J.S., Shin, S.-Y., Min, W.K., Han, N.S., Seo, J.-H., A competitive quantitative polymerase chain reaction method for characterizing the population dynamics during kimchi fermentation. Journal of Industrial Microbiology & Biotechnology 42 (2015), 49–55.
    • (2015) Journal of Industrial Microbiology & Biotechnology , vol.42 , pp. 49-55
    • Ahn, G.-H.1    Moon, J.S.2    Shin, S.-Y.3    Min, W.K.4    Han, N.S.5    Seo, J.-H.6
  • 5
    • 84924294947 scopus 로고    scopus 로고
    • Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products
    • Almeida, M., Hebert, A., Abraham, A.L., Rasmussen, S., Monnet, C., Pons, N., et al. Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products. BMC Genomics, 15, 2014, 1101.
    • (2014) BMC Genomics , vol.15 , pp. 1101
    • Almeida, M.1    Hebert, A.2    Abraham, A.L.3    Rasmussen, S.4    Monnet, C.5    Pons, N.6
  • 6
    • 84959259937 scopus 로고    scopus 로고
    • Next-generation proteomics faces new challenges in environmental biotechnology
    • Armengaud, J., Next-generation proteomics faces new challenges in environmental biotechnology. Current Opinion in Biotechnology 38 (2016), 174–182.
    • (2016) Current Opinion in Biotechnology , vol.38 , pp. 174-182
    • Armengaud, J.1
  • 11
    • 84941966074 scopus 로고    scopus 로고
    • Microbial evolution of traditional mountain cheese and characterization of early fermentation cocci for selection of autochtonous dairy starter strains
    • Carafa, I., Clementi, F., Tuohy, K., Franciosi, E., Microbial evolution of traditional mountain cheese and characterization of early fermentation cocci for selection of autochtonous dairy starter strains. Food Microbiology 53 (2016), 94–103.
    • (2016) Food Microbiology , vol.53 , pp. 94-103
    • Carafa, I.1    Clementi, F.2    Tuohy, K.3    Franciosi, E.4
  • 12
    • 84898630664 scopus 로고    scopus 로고
    • Filamentous fungal diversity and community structure associated with the solid state fermentation of Chinese Maotai-flavor liquor
    • Chen, B., Wu, Q., Xu, Y., Filamentous fungal diversity and community structure associated with the solid state fermentation of Chinese Maotai-flavor liquor. International Journal of Food Microbiology 179 (2014), 80–84.
    • (2014) International Journal of Food Microbiology , vol.179 , pp. 80-84
    • Chen, B.1    Wu, Q.2    Xu, Y.3
  • 13
    • 84980383556 scopus 로고    scopus 로고
    • Poly-gamma-Glutamic acid (PGA)-Producing Bacillus species isolated from Kinema, indian fermented soybean food
    • Chettri, R., Bhutia, M.O., Tamang, J.P., Poly-gamma-Glutamic acid (PGA)-Producing Bacillus species isolated from Kinema, indian fermented soybean food. Frontiers in Microbiology, 7, 2016, 971.
    • (2016) Frontiers in Microbiology , vol.7 , pp. 971
    • Chettri, R.1    Bhutia, M.O.2    Tamang, J.P.3
  • 14
    • 84920903751 scopus 로고    scopus 로고
    • Bacillus species isolated from tungrymbai and bekang, naturally fermented soybean foods of India
    • Chettri, R., Tamang, J.P., Bacillus species isolated from tungrymbai and bekang, naturally fermented soybean foods of India. International Journal of Food Microbiology 197 (2015), 72–76.
    • (2015) International Journal of Food Microbiology , vol.197 , pp. 72-76
    • Chettri, R.1    Tamang, J.P.2
  • 15
    • 84952054747 scopus 로고    scopus 로고
    • Effects of controlling ripening conditions on the dynamics of the native microbial population of Mexican artisanal Cotija cheese assessed by PCR-DGGE
    • Chombo-Morales, P., Kirchmayr, M., Gschaedler, A., Lugo-Cervantes, E., Villanueva-Rodriguez, S., Effects of controlling ripening conditions on the dynamics of the native microbial population of Mexican artisanal Cotija cheese assessed by PCR-DGGE. Lwt-Food Science and Technology 65 (2016), 1153–1161.
    • (2016) Lwt-Food Science and Technology , vol.65 , pp. 1153-1161
    • Chombo-Morales, P.1    Kirchmayr, M.2    Gschaedler, A.3    Lugo-Cervantes, E.4    Villanueva-Rodriguez, S.5
  • 16
    • 84959450101 scopus 로고    scopus 로고
    • Metatranscriptomics reveals temperature-driven functional changes in microbiome impacting cheese maturation rate
    • De Filippis, F., Genovese, A., Ferranti, P., Gilbert, J.A., Ercolini, D., Metatranscriptomics reveals temperature-driven functional changes in microbiome impacting cheese maturation rate. Scientific Reports, 6, 2016, 21871.
    • (2016) Scientific Reports , vol.6 , pp. 21871
    • De Filippis, F.1    Genovese, A.2    Ferranti, P.3    Gilbert, J.A.4    Ercolini, D.5
  • 17
    • 84907021031 scopus 로고    scopus 로고
    • Microbial ecology dynamics reveal a succession in the core microbiota involved in the ripening of pasta filata caciocavallo pugliese cheese
    • De Pasquale, I., Di Cagno, R., Buchin, S., De Angelis, M., Gobbetti, M., Microbial ecology dynamics reveal a succession in the core microbiota involved in the ripening of pasta filata caciocavallo pugliese cheese. Applied and Environmental Microbiology 80 (2014), 6243–6255.
    • (2014) Applied and Environmental Microbiology , vol.80 , pp. 6243-6255
    • De Pasquale, I.1    Di Cagno, R.2    Buchin, S.3    De Angelis, M.4    Gobbetti, M.5
  • 18
    • 84928911036 scopus 로고    scopus 로고
    • Overview of a surface-ripened cheese community functioning by meta-omics analyses
    • Dugat-Bony, E., Straub, C., Teissandier, A., Onesime, D., Loux, V., Monnet, C., et al. Overview of a surface-ripened cheese community functioning by meta-omics analyses. PLoS One, 10, 2015, e0124360.
    • (2015) PLoS One , vol.10 , pp. e0124360
    • Dugat-Bony, E.1    Straub, C.2    Teissandier, A.3    Onesime, D.4    Loux, V.5    Monnet, C.6
  • 19
    • 84959376703 scopus 로고    scopus 로고
    • Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota
    • Escobar-Zepeda, A., Sanchez-Flores, A., Quirasco Baruch, M., Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiology 57 (2016), 116–127.
    • (2016) Food Microbiology , vol.57 , pp. 116-127
    • Escobar-Zepeda, A.1    Sanchez-Flores, A.2    Quirasco Baruch, M.3
  • 21
    • 84939794544 scopus 로고    scopus 로고
    • The genomics of microbial domestication in the fermented food environment
    • Gibbons, J.G., Rinker, D.C., The genomics of microbial domestication in the fermented food environment. Current Opinion in Genetics & Development 35 (2015), 1–8.
    • (2015) Current Opinion in Genetics & Development , vol.35 , pp. 1-8
    • Gibbons, J.G.1    Rinker, D.C.2
  • 22
    • 84938847113 scopus 로고    scopus 로고
    • Identification and quantification of the caproic acid-producing bacterium Clostridium kluyveri in the fermentation of pit mud used for Chinese strong-aroma type liquor production
    • Hu, X.L., Du, H., Xu, Y., Identification and quantification of the caproic acid-producing bacterium Clostridium kluyveri in the fermentation of pit mud used for Chinese strong-aroma type liquor production. International Journal of Food Microbiology 214 (2015), 116–122.
    • (2015) International Journal of Food Microbiology , vol.214 , pp. 116-122
    • Hu, X.L.1    Du, H.2    Xu, Y.3
  • 23
    • 84861562148 scopus 로고    scopus 로고
    • Phylogenetic analysis of a spontaneous cocoa bean fermentation metagenome reveals new insights into its bacterial and fungal community diversity
    • Illeghems, K., De Vuyst, L., Papalexandratou, Z., Weckx, S., Phylogenetic analysis of a spontaneous cocoa bean fermentation metagenome reveals new insights into its bacterial and fungal community diversity. PLoS One, 7, 2012, e38040.
    • (2012) PLoS One , vol.7 , pp. e38040
    • Illeghems, K.1    De Vuyst, L.2    Papalexandratou, Z.3    Weckx, S.4
  • 24
    • 84959114728 scopus 로고    scopus 로고
    • Comparative genome analysis of the candidate functional starter culture strains Lactobacillus fermentum 222 and Lactobacillus plantarum 80 for controlled cocoa bean fermentation processes
    • Illeghems, K., De Vuyst, L., Weckx, S., Comparative genome analysis of the candidate functional starter culture strains Lactobacillus fermentum 222 and Lactobacillus plantarum 80 for controlled cocoa bean fermentation processes. BMC Genomics, 16, 2015, 766.
    • (2015) BMC Genomics , vol.16 , pp. 766
    • Illeghems, K.1    De Vuyst, L.2    Weckx, S.3
  • 25
    • 84962362306 scopus 로고    scopus 로고
    • Assessment of the contribution of cocoa-derived strains of Acetobacter ghanensis and Acetobacter senegalensis to the cocoa bean fermentation process through a genomic approach
    • Illeghems, K., Pelicaen, R., De Vuyst, L., Weckx, S., Assessment of the contribution of cocoa-derived strains of Acetobacter ghanensis and Acetobacter senegalensis to the cocoa bean fermentation process through a genomic approach. Food Microbiology 58 (2016), 68–78.
    • (2016) Food Microbiology , vol.58 , pp. 68-78
    • Illeghems, K.1    Pelicaen, R.2    De Vuyst, L.3    Weckx, S.4
  • 26
    • 84876320472 scopus 로고    scopus 로고
    • Microbial succession and metabolite changes during fermentation of dongchimi, traditional Korean watery kimchi
    • Jeong, S.H., Jung, J.Y., Lee, S.H., Jin, H.M., Jeon, C.O., Microbial succession and metabolite changes during fermentation of dongchimi, traditional Korean watery kimchi. International Journal of Food Microbiology 164 (2013), 46–53.
    • (2013) International Journal of Food Microbiology , vol.164 , pp. 46-53
    • Jeong, S.H.1    Jung, J.Y.2    Lee, S.H.3    Jin, H.M.4    Jeon, C.O.5
  • 27
    • 84877609406 scopus 로고    scopus 로고
    • Microbial succession and metabolite changes during long-term storage of kimchi
    • Jeong, S.H., Lee, S.H., Jung, J.Y., Choi, E.J., Jeon, C.O., Microbial succession and metabolite changes during long-term storage of kimchi. Journal of Food Science 78 (2013), M763–M769.
    • (2013) Journal of Food Science , vol.78 , pp. M763-M769
    • Jeong, S.H.1    Lee, S.H.2    Jung, J.Y.3    Choi, E.J.4    Jeon, C.O.5
  • 30
    • 84908584179 scopus 로고    scopus 로고
    • Acetic acid bacteria from biofilm of strawberry vinegar visualized by microscopy and detected by complementing culture-dependent and culture-independent techniques
    • Jose Valera, M., Jesus Torija, M., Mas, A., Mateo, E., Acetic acid bacteria from biofilm of strawberry vinegar visualized by microscopy and detected by complementing culture-dependent and culture-independent techniques. Food Microbiology 46 (2015), 452–462.
    • (2015) Food Microbiology , vol.46 , pp. 452-462
    • Jose Valera, M.1    Jesus Torija, M.2    Mas, A.3    Mateo, E.4
  • 31
    • 85027920849 scopus 로고    scopus 로고
    • Chromohalobacter is a causing agent for the production of organic acids and putrescine during fermentation of Ganjang, a Korean traditional soy sauce
    • Jung, J.Y., Chun, B.H., Jeon, C.O., Chromohalobacter is a causing agent for the production of organic acids and putrescine during fermentation of Ganjang, a Korean traditional soy sauce. Journal of Food Science 80 (2015), M2853–M2859.
    • (2015) Journal of Food Science , vol.80 , pp. M2853-M2859
    • Jung, J.Y.1    Chun, B.H.2    Jeon, C.O.3
  • 32
    • 84973570738 scopus 로고    scopus 로고
    • Functional characterization of bacterial communities responsible for fermentation of Doenjang: A traditional Korean fermented soybean paste
    • Jung, W.Y., Jung, J.Y., Lee, H.J., Jeon, C.O., Functional characterization of bacterial communities responsible for fermentation of Doenjang: A traditional Korean fermented soybean paste. Frontiers in Microbiology, 7, 2016, 827.
    • (2016) Frontiers in Microbiology , vol.7 , pp. 827
    • Jung, W.Y.1    Jung, J.Y.2    Lee, H.J.3    Jeon, C.O.4
  • 33
    • 84907814534 scopus 로고    scopus 로고
    • Kimchi microflora: History, current status, and perspectives for industrial kimchi production
    • Jung, J.Y., Lee, S.H., Jeon, C.O., Kimchi microflora: History, current status, and perspectives for industrial kimchi production. Applied Microbiology and Biotechnology 98 (2014), 2385–2393.
    • (2014) Applied Microbiology and Biotechnology , vol.98 , pp. 2385-2393
    • Jung, J.Y.1    Lee, S.H.2    Jeon, C.O.3
  • 37
    • 84924349994 scopus 로고    scopus 로고
    • Bacterial community dynamics and metabolite changes in myeolchi-aekjeot, a Korean traditional fermented fish sauce, during fermentation
    • Lee, S.H., Jung, J.Y., Jeon, C.O., Bacterial community dynamics and metabolite changes in myeolchi-aekjeot, a Korean traditional fermented fish sauce, during fermentation. International Journal of Food Microbiology 203 (2015), 15–22.
    • (2015) International Journal of Food Microbiology , vol.203 , pp. 15-22
    • Lee, S.H.1    Jung, J.Y.2    Jeon, C.O.3
  • 38
    • 84954508760 scopus 로고    scopus 로고
    • Characterization of antimicrobial lipopeptides produced by Bacillus sp LM7 isolated from chungkookjang, a Korean traditional fermented soybean food
    • Lee, M.H., Lee, J., Nam, Y.D., Lee, J.S., Seo, M.J., Yi, S.H., Characterization of antimicrobial lipopeptides produced by Bacillus sp LM7 isolated from chungkookjang, a Korean traditional fermented soybean food. International Journal of Food Microbiology 221 (2016), 12–18.
    • (2016) International Journal of Food Microbiology , vol.221 , pp. 12-18
    • Lee, M.H.1    Lee, J.2    Nam, Y.D.3    Lee, J.S.4    Seo, M.J.5    Yi, S.H.6
  • 39
    • 84964320833 scopus 로고    scopus 로고
    • Bacterial communities and volatile compounds in Doubanjiang, a Chinese traditional red pepper paste
    • Li, Z., Dong, L., Huang, Q., Wang, X., Bacterial communities and volatile compounds in Doubanjiang, a Chinese traditional red pepper paste. Journal of Applied Microbiology 120 (2016), 1585–1594.
    • (2016) Journal of Applied Microbiology , vol.120 , pp. 1585-1594
    • Li, Z.1    Dong, L.2    Huang, Q.3    Wang, X.4
  • 40
    • 84929952795 scopus 로고    scopus 로고
    • Microbial diversity and their roles in the vinegar fermentation process
    • Li, S., Li, P., Feng, F., Luo, L.X., Microbial diversity and their roles in the vinegar fermentation process. Applied Microbiology and Biotechnology 99 (2015), 4997–5024.
    • (2015) Applied Microbiology and Biotechnology , vol.99 , pp. 4997-5024
    • Li, S.1    Li, P.2    Feng, F.3    Luo, L.X.4
  • 41
    • 84991407778 scopus 로고    scopus 로고
    • Bacterial dynamics and metabolite changes in solid-state acetic acid fermentation of Shanxi aged vinegar
    • Li, S., Li, P., Liu, X., Luo, L.X., Lin, W.F., Bacterial dynamics and metabolite changes in solid-state acetic acid fermentation of Shanxi aged vinegar. Applied Microbiology and Biotechnology 100 (2016), 4395–4411.
    • (2016) Applied Microbiology and Biotechnology , vol.100 , pp. 4395-4411
    • Li, S.1    Li, P.2    Liu, X.3    Luo, L.X.4    Lin, W.F.5
  • 42
    • 84924982679 scopus 로고    scopus 로고
    • Genomic evolution of Saccharomyces cerevisiae under Chinese rice wine fermentation
    • Li, Y., Zhang, W., Zheng, D., Zhou, Z., Yu, W., Zhang, L., et al. Genomic evolution of Saccharomyces cerevisiae under Chinese rice wine fermentation. Genome Biology and Evolution 6 (2014), 2516–2526.
    • (2014) Genome Biology and Evolution , vol.6 , pp. 2516-2526
    • Li, Y.1    Zhang, W.2    Zheng, D.3    Zhou, Z.4    Yu, W.5    Zhang, L.6
  • 43
    • 84949650306 scopus 로고    scopus 로고
    • Genomic and transcriptomic analyses of the Chinese Maotai-flavored liquor yeast MT1 revealed its unique multi-carbon co-utilization
    • Lu, X.W., Wu, Q., Zhang, Y., Xu, Y., Genomic and transcriptomic analyses of the Chinese Maotai-flavored liquor yeast MT1 revealed its unique multi-carbon co-utilization. BMC Genomics, 16, 2015, 1064.
    • (2015) BMC Genomics , vol.16 , pp. 1064
    • Lu, X.W.1    Wu, Q.2    Zhang, Y.3    Xu, Y.4
  • 44
    • 84882926230 scopus 로고    scopus 로고
    • Processing and chemical constituents of Pu-erh tea: A review
    • Lv, H.P., Zhang, Y.J., Lin, Z., Liang, Y.R., Processing and chemical constituents of Pu-erh tea: A review. Food Research International 53 (2013), 608–618.
    • (2013) Food Research International , vol.53 , pp. 608-618
    • Lv, H.P.1    Zhang, Y.J.2    Lin, Z.3    Liang, Y.R.4
  • 47
    • 84944153504 scopus 로고    scopus 로고
    • Ten years of subproteome investigations in lactic acid bacteria: A key for food starter and probiotic typing
    • Mangiapane, E., Mazzoli, R., Pessione, A., Svensson, B., Riedel, K., Pessione, E., Ten years of subproteome investigations in lactic acid bacteria: A key for food starter and probiotic typing. Journal of Proteomics 127 (2015), 332–339.
    • (2015) Journal of Proteomics , vol.127 , pp. 332-339
    • Mangiapane, E.1    Mazzoli, R.2    Pessione, A.3    Svensson, B.4    Riedel, K.5    Pessione, E.6
  • 48
    • 84976349408 scopus 로고    scopus 로고
    • Complexity and dynamics of the winemaking bacterial communities in berries, musts, and wines from apulian grape cultivars through time and space
    • Marzano, M., Fosso, B., Manzari, C., Grieco, F., Intranuovo, M., Cozzi, G., et al. Complexity and dynamics of the winemaking bacterial communities in berries, musts, and wines from apulian grape cultivars through time and space. PLoS One, 11, 2016, e0157383.
    • (2016) PLoS One , vol.11 , pp. e0157383
    • Marzano, M.1    Fosso, B.2    Manzari, C.3    Grieco, F.4    Intranuovo, M.5    Cozzi, G.6
  • 49
    • 84910002319 scopus 로고    scopus 로고
    • Microbial diversity of a Camembert-type cheese using freeze-dried Tibetan kefir coculture as starter culture by culture-dependent and culture-independent methods
    • Mei, J., Guo, Q., Wu, Y., Li, Y., Microbial diversity of a Camembert-type cheese using freeze-dried Tibetan kefir coculture as starter culture by culture-dependent and culture-independent methods. PLoS One, 9, 2014, e111648.
    • (2014) PLoS One , vol.9 , pp. e111648
    • Mei, J.1    Guo, Q.2    Wu, Y.3    Li, Y.4
  • 50
    • 84966716401 scopus 로고    scopus 로고
    • Investigation of the activity of the microorganisms in a reblochon-style cheese by metatranscriptomic analysis
    • Monnet, C., Dugat-Bony, E., Swennen, D., Beckerich, J.M., Irlinger, F., Fraud, S., et al. Investigation of the activity of the microorganisms in a reblochon-style cheese by metatranscriptomic analysis. Frontiers in Microbiology, 7, 2016, 536.
    • (2016) Frontiers in Microbiology , vol.7 , pp. 536
    • Monnet, C.1    Dugat-Bony, E.2    Swennen, D.3    Beckerich, J.M.4    Irlinger, F.5    Fraud, S.6
  • 51
    • 84886294840 scopus 로고    scopus 로고
    • Metabolomics as a tool for the comprehensive understanding of fermented and functional foods with lactic acid bacteria
    • Mozzi, F., Ortiz, M.E., Bleckwedel, J., De Vuyst, L., Pescuma, M., Metabolomics as a tool for the comprehensive understanding of fermented and functional foods with lactic acid bacteria. Food Research International 54 (2013), 1152–1161.
    • (2013) Food Research International , vol.54 , pp. 1152-1161
    • Mozzi, F.1    Ortiz, M.E.2    Bleckwedel, J.3    De Vuyst, L.4    Pescuma, M.5
  • 52
    • 84983048332 scopus 로고    scopus 로고
    • Fermented foods: Are they tasty medicines for helicobacter pylori associated peptic ulcer and gastric cancer?
    • Nair, M.R.B., Chouhan, D., Sen Gupta, S., Chattopadhyay, S., Fermented foods: Are they tasty medicines for helicobacter pylori associated peptic ulcer and gastric cancer?. Frontiers in Microbiology, 7, 2016, 1148.
    • (2016) Frontiers in Microbiology , vol.7 , pp. 1148
    • Nair, M.R.B.1    Chouhan, D.2    Sen Gupta, S.3    Chattopadhyay, S.4
  • 54
    • 84918774298 scopus 로고    scopus 로고
    • Dynamics and diversity of microbial community succession in traditional fermentation of Shanxi aged vinegar
    • Nie, Z., Zheng, Y., Du, H., Xie, S., Wang, M., Dynamics and diversity of microbial community succession in traditional fermentation of Shanxi aged vinegar. Food Microbiology 47 (2015), 62–68.
    • (2015) Food Microbiology , vol.47 , pp. 62-68
    • Nie, Z.1    Zheng, Y.2    Du, H.3    Xie, S.4    Wang, M.5
  • 55
    • 84884407644 scopus 로고    scopus 로고
    • Exploring microbial succession and diversity during solid-state fermentation of Tianjin duliu mature vinegar
    • Nie, Z.Q., Zheng, Y., Wang, M., Han, Y., Wang, Y.N., Luo, J.M., et al. Exploring microbial succession and diversity during solid-state fermentation of Tianjin duliu mature vinegar. Bioresource Technology 148 (2013), 325–333.
    • (2013) Bioresource Technology , vol.148 , pp. 325-333
    • Nie, Z.Q.1    Zheng, Y.2    Wang, M.3    Han, Y.4    Wang, Y.N.5    Luo, J.M.6
  • 56
    • 84956675876 scopus 로고    scopus 로고
    • Metabolomics reveals the effect of garlic on antioxidant- and protease-activities during Cheonggukjang (fermented soybean paste) fermentation
    • Oh, D.G., Jang, Y.K., Woo, J.E., Kim, J.S., Lee, C.H., Metabolomics reveals the effect of garlic on antioxidant- and protease-activities during Cheonggukjang (fermented soybean paste) fermentation. Food Research International 82 (2016), 86–94.
    • (2016) Food Research International , vol.82 , pp. 86-94
    • Oh, D.G.1    Jang, Y.K.2    Woo, J.E.3    Kim, J.S.4    Lee, C.H.5
  • 57
    • 84944165102 scopus 로고    scopus 로고
    • Improving the quality of genome, protein sequence, and taxonomy databases: A prerequisite for microbiome meta-omics 2.0
    • Olivier, P., Armengaud, J., Improving the quality of genome, protein sequence, and taxonomy databases: A prerequisite for microbiome meta-omics 2.0. Proteomics 15 (2015), 3418–3423.
    • (2015) Proteomics , vol.15 , pp. 3418-3423
    • Olivier, P.1    Armengaud, J.2
  • 59
    • 84962484655 scopus 로고    scopus 로고
    • GC-MS based metabolomics approach of Kimchi for the understanding of Lactobacillus plantarum fermentation characteristics
    • Park, S.E., Yoo, S.A., Seo, S.H., Lee, K.I., Na, C.S., Son, H.S., GC-MS based metabolomics approach of Kimchi for the understanding of Lactobacillus plantarum fermentation characteristics. Lwt-Food Science and Technology 68 (2016), 313–321.
    • (2016) Lwt-Food Science and Technology , vol.68 , pp. 313-321
    • Park, S.E.1    Yoo, S.A.2    Seo, S.H.3    Lee, K.I.4    Na, C.S.5    Son, H.S.6
  • 60
    • 84939233322 scopus 로고    scopus 로고
    • Metabolic interactions in microbial communities: Untangling the Gordian knot
    • Ponomarova, O., Patil, K.R., Metabolic interactions in microbial communities: Untangling the Gordian knot. Current Opinion in Microbiology 27 (2015), 37–44.
    • (2015) Current Opinion in Microbiology , vol.27 , pp. 37-44
    • Ponomarova, O.1    Patil, K.R.2
  • 61
    • 84965162360 scopus 로고    scopus 로고
    • Analysis of microbial diversity and dynamics during wine fermentation of Grenache grape variety by high-throughput barcoding sequencing
    • Portillo, M. d. C., Mas, A., Analysis of microbial diversity and dynamics during wine fermentation of Grenache grape variety by high-throughput barcoding sequencing. LWT - Food Science and Technology 72 (2016), 317–321.
    • (2016) LWT - Food Science and Technology , vol.72 , pp. 317-321
    • Portillo, M.D.C.1    Mas, A.2
  • 62
    • 84907149976 scopus 로고    scopus 로고
    • Physicochemical and microbiological characterization of chicha, a rice-based fermented beverage produced by Umutina Brazilian Amerindians
    • Puerari, C., Magalhaes-Guedes, K.T., Schwan, R.F., Physicochemical and microbiological characterization of chicha, a rice-based fermented beverage produced by Umutina Brazilian Amerindians. Food Microbiology 46 (2015), 210–217.
    • (2015) Food Microbiology , vol.46 , pp. 210-217
    • Puerari, C.1    Magalhaes-Guedes, K.T.2    Schwan, R.F.3
  • 64
    • 84933280118 scopus 로고    scopus 로고
    • Three-phase succession of autochthonous lactic acid bacteria to reach a stable ecosystem within 7days of natural bamboo shoot fermentation as revealed by different molecular approaches
    • Romi, W., Ahmed, G., Jeyaram, K., Three-phase succession of autochthonous lactic acid bacteria to reach a stable ecosystem within 7days of natural bamboo shoot fermentation as revealed by different molecular approaches. Molecular Ecology 24 (2015), 3372–3389.
    • (2015) Molecular Ecology , vol.24 , pp. 3372-3389
    • Romi, W.1    Ahmed, G.2    Jeyaram, K.3
  • 65
    • 84891281531 scopus 로고    scopus 로고
    • Fermentation and proteome profiles of Lactobacillus plantarum strains during growth under food-like conditions
    • Siragusa, S., De Angelis, M., Calasso, M., Campanella, D., Minervini, F., Di Cagno, R., et al. Fermentation and proteome profiles of Lactobacillus plantarum strains during growth under food-like conditions. Journal of Proteomics 96 (2014), 366–380.
    • (2014) Journal of Proteomics , vol.96 , pp. 366-380
    • Siragusa, S.1    De Angelis, M.2    Calasso, M.3    Campanella, D.4    Minervini, F.5    Di Cagno, R.6
  • 67
    • 84925014437 scopus 로고    scopus 로고
    • AGAPE (automated genome analysis PipelinE) for Pan-genome analysis of Saccharomyces cerevisiae
    • Song, G., Dickins, B.J.A., Demeter, J., Engel, S., Dunn, B., Cherry, J.M., AGAPE (automated genome analysis PipelinE) for Pan-genome analysis of Saccharomyces cerevisiae. PLoS One, 10, 2015, e0120671.
    • (2015) PLoS One , vol.10 , pp. e0120671
    • Song, G.1    Dickins, B.J.A.2    Demeter, J.3    Engel, S.4    Dunn, B.5    Cherry, J.M.6
  • 68
    • 84969326346 scopus 로고    scopus 로고
    • Dynamic changes in microbiota and mycobiota during spontaneous “Vino Santo Trentino’ fermentation
    • Stefanini, I., Albanese, D., Cavazza, A., Franciosi, E., De Filippo, C., Donati, C., et al. Dynamic changes in microbiota and mycobiota during spontaneous “Vino Santo Trentino’ fermentation. Microbial Biotechnology 9 (2016), 195–208.
    • (2016) Microbial Biotechnology , vol.9 , pp. 195-208
    • Stefanini, I.1    Albanese, D.2    Cavazza, A.3    Franciosi, E.4    De Filippo, C.5    Donati, C.6
  • 69
    • 84964290459 scopus 로고    scopus 로고
    • Consensus pan-genome assembly of the specialised wine bacterium Oenococcus oeni
    • Sternes, P.R., Borneman, A.R., Consensus pan-genome assembly of the specialised wine bacterium Oenococcus oeni. BMC Genomics, 17, 2016, 308.
    • (2016) BMC Genomics , vol.17 , pp. 308
    • Sternes, P.R.1    Borneman, A.R.2
  • 70
    • 84926643262 scopus 로고    scopus 로고
    • Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine
    • Sulaiman, J., Gan, H.M., Yin, W.F., Chan, K.G., Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Frontiers in Microbiology, 5, 2014, 556.
    • (2014) Frontiers in Microbiology , vol.5 , pp. 556
    • Sulaiman, J.1    Gan, H.M.2    Yin, W.F.3    Chan, K.G.4
  • 71
    • 84964350689 scopus 로고    scopus 로고
    • Review: Diversity of microorganisms in global fermented foods and beverages
    • Tamang, J.P., Watanabe, K., Holzapfel, W.H., Review: Diversity of microorganisms in global fermented foods and beverages. Frontiers in Microbiology 7 (2016), 1–28.
    • (2016) Frontiers in Microbiology , vol.7 , pp. 1-28
    • Tamang, J.P.1    Watanabe, K.2    Holzapfel, W.H.3
  • 72
    • 84951936400 scopus 로고    scopus 로고
    • Study of the dynamic changes in the non-volatile chemical constituents of black tea during fermentation processing by a non-targeted metabolomics approach
    • Tan, J.F., Dai, W.D., Lu, M.L., Lv, H.P., Guo, L., Zhang, Y., et al. Study of the dynamic changes in the non-volatile chemical constituents of black tea during fermentation processing by a non-targeted metabolomics approach. Food Research International 79 (2016), 106–113.
    • (2016) Food Research International , vol.79 , pp. 106-113
    • Tan, J.F.1    Dai, W.D.2    Lu, M.L.3    Lv, H.P.4    Guo, L.5    Zhang, Y.6
  • 74
    • 84882619393 scopus 로고    scopus 로고
    • Bacterial and fungal communities in Pu'er tea samples of different ages
    • Tian, J.Q., Zhu, Z.X., Wu, B., Wang, L., Liu, X.Z., Bacterial and fungal communities in Pu'er tea samples of different ages. Journal of Food Science 78 (2013), M1249–M1256.
    • (2013) Journal of Food Science , vol.78 , pp. M1249-M1256
    • Tian, J.Q.1    Zhu, Z.X.2    Wu, B.3    Wang, L.4    Liu, X.Z.5
  • 75
    • 84958279296 scopus 로고    scopus 로고
    • Diversity of the microbiota involved in wine and organic apple cider submerged vinegar production as revealed by DHPLC analysis and next-generation sequencing
    • Trcek, J., Mahnic, A., Rupnik, M., Diversity of the microbiota involved in wine and organic apple cider submerged vinegar production as revealed by DHPLC analysis and next-generation sequencing. International Journal of Food Microbiology 223 (2016), 57–62.
    • (2016) International Journal of Food Microbiology , vol.223 , pp. 57-62
    • Trcek, J.1    Mahnic, A.2    Rupnik, M.3
  • 76
    • 84978485827 scopus 로고    scopus 로고
    • A tandem mass spectrometry method based on selected ions detects low-abundance phenolics in black tea - theatridimensins as products of the oxidative cascade
    • Verloop, A.J.W., Vincken, J.P., Gruppen, H., A tandem mass spectrometry method based on selected ions detects low-abundance phenolics in black tea - theatridimensins as products of the oxidative cascade. Rapid Communications in Mass Spectrometry 30 (2016), 1797–1805.
    • (2016) Rapid Communications in Mass Spectrometry , vol.30 , pp. 1797-1805
    • Verloop, A.J.W.1    Vincken, J.P.2    Gruppen, H.3
  • 77
    • 84927696179 scopus 로고    scopus 로고
    • Fungal isolates from a Pu-Erh type tea fermentation and their ability to convert tea polyphenols to theabrownins
    • Wang, Q., Gong, J., Chisti, Y., Sirisansaneeyakul, S., Fungal isolates from a Pu-Erh type tea fermentation and their ability to convert tea polyphenols to theabrownins. Journal of Food Science 80 (2015), M809–M817.
    • (2015) Journal of Food Science , vol.80 , pp. M809-M817
    • Wang, Q.1    Gong, J.2    Chisti, Y.3    Sirisansaneeyakul, S.4
  • 78
    • 84973326491 scopus 로고    scopus 로고
    • Exploring flavour-producing core microbiota in multispecies solid-state fermentation of traditional Chinese vinegar
    • Wang, Z.M., Lu, Z.M., Shi, J.S., Xu, Z.H., Exploring flavour-producing core microbiota in multispecies solid-state fermentation of traditional Chinese vinegar. Scientific Reports, 6, 2016, 26818.
    • (2016) Scientific Reports , vol.6 , pp. 26818
    • Wang, Z.M.1    Lu, Z.M.2    Shi, J.S.3    Xu, Z.H.4
  • 79
    • 84927730652 scopus 로고    scopus 로고
    • Batch-to-batch uniformity of bacterial community succession and flavor formation in the fermentation of Zhenjiang aromatic vinegar
    • Wang, Z.M., Lu, Z.M., Yu, Y.J., Li, G.Q., Shi, J.S., Xu, Z.H., Batch-to-batch uniformity of bacterial community succession and flavor formation in the fermentation of Zhenjiang aromatic vinegar. Food Microbiology 50 (2015), 64–69.
    • (2015) Food Microbiology , vol.50 , pp. 64-69
    • Wang, Z.M.1    Lu, Z.M.2    Yu, Y.J.3    Li, G.Q.4    Shi, J.S.5    Xu, Z.H.6
  • 80
    • 84947613639 scopus 로고    scopus 로고
    • Comparative proteome of acetobacter pasteurianus Ab3 during the high acidity rice vinegar fermentation
    • Wang, Z., Zang, N., Shi, J.Y., Feng, W., Liu, Y., Liang, X.L., Comparative proteome of acetobacter pasteurianus Ab3 during the high acidity rice vinegar fermentation. Applied Biochemistry and Biotechnology 177 (2015), 1573–1588.
    • (2015) Applied Biochemistry and Biotechnology , vol.177 , pp. 1573-1588
    • Wang, Z.1    Zang, N.2    Shi, J.Y.3    Feng, W.4    Liu, Y.5    Liang, X.L.6
  • 81
    • 4344646435 scopus 로고    scopus 로고
    • The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms
    • Wilmes, P., Bond, P.L., The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms. Environmental Microbiology 6 (2004), 911–920.
    • (2004) Environmental Microbiology , vol.6 , pp. 911-920
    • Wilmes, P.1    Bond, P.L.2
  • 82
    • 84944152758 scopus 로고    scopus 로고
    • A decade of metaproteomics: Where we stand and what the future holds
    • Wilmes, P., Heintz-Buschart, A., Bond, P.L., A decade of metaproteomics: Where we stand and what the future holds. Proteomics 15 (2015), 3409–3417.
    • (2015) Proteomics , vol.15 , pp. 3409-3417
    • Wilmes, P.1    Heintz-Buschart, A.2    Bond, P.L.3
  • 83
    • 84904578387 scopus 로고    scopus 로고
    • Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity
    • Wolfe, B.E., Button, J.E., Santarelli, M., Dutton, R.J., Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158 (2014), 422–433.
    • (2014) Cell , vol.158 , pp. 422-433
    • Wolfe, B.E.1    Button, J.E.2    Santarelli, M.3    Dutton, R.J.4
  • 84
    • 84922448759 scopus 로고    scopus 로고
    • Regulating yeast flavor metabolism by controlling saccharification reaction rate in simultaneous saccharification and fermentation of Chinese Maotai-flavor liquor
    • Wu, Q., Chen, B., Xu, Y., Regulating yeast flavor metabolism by controlling saccharification reaction rate in simultaneous saccharification and fermentation of Chinese Maotai-flavor liquor. International Journal of Food Microbiology 200 (2015), 39–46.
    • (2015) International Journal of Food Microbiology , vol.200 , pp. 39-46
    • Wu, Q.1    Chen, B.2    Xu, Y.3
  • 85
    • 84936146211 scopus 로고    scopus 로고
    • Changes in flavour and microbial diversity during natural fermentation of suan-cai, a traditional food made in Northeast China
    • Wu, R.N., Yu, M.L., Liu, X.Y., Meng, L.S., Wang, Q.Q., Xue, Y.T., et al. Changes in flavour and microbial diversity during natural fermentation of suan-cai, a traditional food made in Northeast China. International Journal of Food Microbiology 211 (2015), 23–31.
    • (2015) International Journal of Food Microbiology , vol.211 , pp. 23-31
    • Wu, R.N.1    Yu, M.L.2    Liu, X.Y.3    Meng, L.S.4    Wang, Q.Q.5    Xue, Y.T.6
  • 87
    • 84871652857 scopus 로고    scopus 로고
    • Molecular cloning and antimicrobial activity of enterolysin A and helveticin J of bacteriolysins from metagenome of Chinese traditional fermented foods
    • Zhang, T., Pan, Y., Li, B., Ou, J., Zhang, J., Chen, Y., et al. Molecular cloning and antimicrobial activity of enterolysin A and helveticin J of bacteriolysins from metagenome of Chinese traditional fermented foods. Food Control 31 (2013), 499–507.
    • (2013) Food Control , vol.31 , pp. 499-507
    • Zhang, T.1    Pan, Y.2    Li, B.3    Ou, J.4    Zhang, J.5    Chen, Y.6
  • 88
    • 84976626411 scopus 로고    scopus 로고
    • The microbiome and metabolites in fermented Pu-erh tea as revealed by high-throughput sequencing and quantitative multiplex metabolite analysis
    • Zhang, Y.J., Skaar, I., Sulyok, M., Liu, X.Z., Rao, M.Y., Taylor, J.W., The microbiome and metabolites in fermented Pu-erh tea as revealed by high-throughput sequencing and quantitative multiplex metabolite analysis. PLoS One, 11, 2016, e0157847.
    • (2016) PLoS One , vol.11 , pp. e0157847
    • Zhang, Y.J.1    Skaar, I.2    Sulyok, M.3    Liu, X.Z.4    Rao, M.Y.5    Taylor, J.W.6
  • 89
    • 84961924562 scopus 로고    scopus 로고
    • Characterization of thermophilic fungal community associated with pile fermentation of Pu-erh tea
    • Zhang, W., Yang, R.J., Fang, W.J., Yan, L., Lu, J., Sheng, J., et al. Characterization of thermophilic fungal community associated with pile fermentation of Pu-erh tea. International Journal of Food Microbiology 227 (2016), 29–33.
    • (2016) International Journal of Food Microbiology , vol.227 , pp. 29-33
    • Zhang, W.1    Yang, R.J.2    Fang, W.J.3    Yan, L.4    Lu, J.5    Sheng, J.6
  • 90
  • 91
    • 84944686253 scopus 로고    scopus 로고
    • Difference of microbial community stressed in artificial pit muds for Luzhou-flavour liquor brewing revealed by multiphase culture-independent technology
    • Zhang, L., Zhou, R., Niu, M., Zheng, J., Wu, C., Difference of microbial community stressed in artificial pit muds for Luzhou-flavour liquor brewing revealed by multiphase culture-independent technology. Journal of Applied Microbiology 119 (2015), 1345–1356.
    • (2015) Journal of Applied Microbiology , vol.119 , pp. 1345-1356
    • Zhang, L.1    Zhou, R.2    Niu, M.3    Zheng, J.4    Wu, C.5
  • 92
    • 84884813911 scopus 로고    scopus 로고
    • Structure and dynamics of the bacterial communities in fermentation of the traditional Chinese post-fermented pu-erh tea revealed by 16S rRNA gene clone library
    • Zhao, M., Xiao, W., Ma, Y., Sun, T.T., Yuan, W.X., Tang, N., et al. Structure and dynamics of the bacterial communities in fermentation of the traditional Chinese post-fermented pu-erh tea revealed by 16S rRNA gene clone library. World Journal of Microbiology & Biotechnology 29 (2013), 1877–1884.
    • (2013) World Journal of Microbiology & Biotechnology , vol.29 , pp. 1877-1884
    • Zhao, M.1    Xiao, W.2    Ma, Y.3    Sun, T.T.4    Yuan, W.X.5    Tang, N.6
  • 93
    • 84924691931 scopus 로고    scopus 로고
    • Gene regulation in Aspergillus oryzae promotes hyphal growth and flavor formation in soy sauce koji
    • Zhao, G.Z., Yao, Y.P., Hao, G.F., Fang, D.S., Yin, B.X., Cao, X.H., et al. Gene regulation in Aspergillus oryzae promotes hyphal growth and flavor formation in soy sauce koji. Rsc Advances 5 (2015), 24224–24230.
    • (2015) Rsc Advances , vol.5 , pp. 24224-24230
    • Zhao, G.Z.1    Yao, Y.P.2    Hao, G.F.3    Fang, D.S.4    Yin, B.X.5    Cao, X.H.6
  • 94
    • 84877914576 scopus 로고    scopus 로고
    • Comparative genomic analysis of Aspergillus oryzae strains 3.042 and RIB40 for soy sauce fermentation
    • Zhao, G., Yao, Y., Wang, C., Hou, L., Cao, X., Comparative genomic analysis of Aspergillus oryzae strains 3.042 and RIB40 for soy sauce fermentation. International Journal of Food Microbiology 164 (2013), 148–154.
    • (2013) International Journal of Food Microbiology , vol.164 , pp. 148-154
    • Zhao, G.1    Yao, Y.2    Wang, C.3    Hou, L.4    Cao, X.5
  • 95
    • 84929359247 scopus 로고    scopus 로고
    • An integrated metagenomics/metaproteomics investigation of the microbial communities and enzymes in solid-state fermentation of Pu-erh tea
    • Zhao, M., Zhang, D.L., Su, X.Q., Duan, S.M., Wan, J.Q., Yuan, W.X., et al. An integrated metagenomics/metaproteomics investigation of the microbial communities and enzymes in solid-state fermentation of Pu-erh tea. Scientific Reports, 5, 2015, 10117.
    • (2015) Scientific Reports , vol.5 , pp. 10117
    • Zhao, M.1    Zhang, D.L.2    Su, X.Q.3    Duan, S.M.4    Wan, J.Q.5    Yuan, W.X.6
  • 96
    • 84961935906 scopus 로고    scopus 로고
    • Selection of taste markers related to lactic acid bacteria microflora metabolism for Chinese traditional Paocai: A gas chromatography-mass spectrometry -based metabolomics approach
    • Zhao, N., Zhang, C.C., Yang, Q., Guo, Z., Yang, B., Lu, W.W., et al. Selection of taste markers related to lactic acid bacteria microflora metabolism for Chinese traditional Paocai: A gas chromatography-mass spectrometry -based metabolomics approach. Journal of Agricultural and Food Chemistry 64 (2016), 2415–2422.
    • (2016) Journal of Agricultural and Food Chemistry , vol.64 , pp. 2415-2422
    • Zhao, N.1    Zhang, C.C.2    Yang, Q.3    Guo, Z.4    Yang, B.5    Lu, W.W.6
  • 97
    • 84934896849 scopus 로고    scopus 로고
    • Proteomic and high-throughput analysis of protein expression and microbial diversity of microbes from 30-and 300-year pit muds of Chinese Luzhou-flavor liquor
    • Zheng, Q., Lin, B.R., Wang, Y.B., Zhang, Q.P., He, X.X., Yang, P., et al. Proteomic and high-throughput analysis of protein expression and microbial diversity of microbes from 30-and 300-year pit muds of Chinese Luzhou-flavor liquor. Food Research International 75 (2015), 305–314.
    • (2015) Food Research International , vol.75 , pp. 305-314
    • Zheng, Q.1    Lin, B.R.2    Wang, Y.B.3    Zhang, Q.P.4    He, X.X.5    Yang, P.6
  • 98
    • 84964981502 scopus 로고    scopus 로고
    • Biocontrol of geosmin-producing Streptomyces spp. by two Bacillus strains from Chinese liquor
    • Zhi, Y., Wu, Q., Du, H., Xu, Y., Biocontrol of geosmin-producing Streptomyces spp. by two Bacillus strains from Chinese liquor. International Journal of Food Microbiology 231 (2016), 1–9.
    • (2016) International Journal of Food Microbiology , vol.231 , pp. 1-9
    • Zhi, Y.1    Wu, Q.2    Du, H.3    Xu, Y.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.